Now only reports diffs that are not gaps in msa seq
Attempting to sign jars with pfaat certificate.
minor fixes
Catch situation where there are 1 atoms in th epdb file
Add pfam prosite evidence superfam smart annots, add safari for mac
fix import res annot so colors of preexisting annots are not overwritten
specificity score
get min distance between residue set 1 and set2
make pfaat target the default
