Protein Family Alignment Annotation Tool svncode

Add option to compute PID over all residues or only non gap residues for user defined colors. Add option pane to encourage user to save defined csm file.

Add option to compute PID over all residues or only non gap residues for user defined colors. Add option pane to encourage user to save defined csm file.

warn user that no columns were selected when they attempt to delete selected columns

print each time VNE is recalculated

only show name1 panel for inserted seq

Set alignmentRecentlyEdited so VNE is recomputed

Fix various bugs associated with consensus component after resizing

Resize consensus component each time as align lenght may have changed

Only recompute VNE when alignmentRecentlyEdited AND
handle issue where index can be out of bounds for get vne after adding new columns

add alignmentRecentlyEdited for deciding when to recompute VNE