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Do not include CA residues in sequence if they are alternative locations

dcaffrey 2007-09-14

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Parent: [r1107]

Child: [r1109]

changed /trunk/pfaat/src/com/neogenesis/pfaat/AlignmentDifferenceDialog.java
changed /trunk/pfaat/src/com/neogenesis/pfaat/AlignmentNamePanel.java
changed /trunk/pfaat/src/com/neogenesis/pfaat/sequence/Sequence.java
/trunk/pfaat/src/com/neogenesis/pfaat/AlignmentDifferenceDialog.java Diff Switch to side-by-side view
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/trunk/pfaat/src/com/neogenesis/pfaat/AlignmentNamePanel.java Diff Switch to side-by-side view
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/trunk/pfaat/src/com/neogenesis/pfaat/sequence/Sequence.java Diff Switch to side-by-side view
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