Protein Family Alignment Annotation Tool svncode

change help documentation

Removed redundant warnings when associating pdb to sequence.

Removed redundant warnings when associating pdb to sequence.

change name of tmeporarily insert pdb file to name.pdbTEMP

Fix residue selection in Jmol to Pfaat direction

Replaced with previous version code.

Replaced code

Uncommented log usage method.

Updated to fix bug related to selection of atoms in JMOL structure viewer and highlight residue in alignment

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