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Comparison Matrix changes *mostly* done...everyhting works except for Inlude Gaps...waiting for daniel's help on the exact implemention of that

pauldana 2004-12-17

Browse code at this revision

Parent: [r100]

Child: [r102]

changed /trunk/pfaat/src/com/neogenesis/pfaat/AlignmentFrame.java
changed /trunk/pfaat/src/com/neogenesis/pfaat/AlignmentPanel.java
changed /trunk/pfaat/src/com/neogenesis/pfaat/ComparisonFrame.java
changed /trunk/pfaat/src/com/neogenesis/pfaat/Sequence.java
added /trunk/pfaat/src/com/neogenesis/pfaat/comparison
added /trunk/pfaat/src/com/neogenesis/pfaat/comparison/Comparison.java
added /trunk/pfaat/src/com/neogenesis/pfaat/comparison/ComparisonOptions.java
added /trunk/pfaat/src/com/neogenesis/pfaat/comparison/ComparisonOptionsDialog.java
/trunk/pfaat/src/com/neogenesis/pfaat/AlignmentFrame.java Diff Switch to side-by-side view
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/trunk/pfaat/src/com/neogenesis/pfaat/AlignmentPanel.java Diff Switch to side-by-side view
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/trunk/pfaat/src/com/neogenesis/pfaat/ComparisonFrame.java Diff Switch to side-by-side view
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/trunk/pfaat/src/com/neogenesis/pfaat/Sequence.java Diff Switch to side-by-side view
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/trunk/pfaat/src/com/neogenesis/pfaat/comparison
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/trunk/pfaat/src/com/neogenesis/pfaat/comparison/Comparison.java Diff Switch to side-by-side view
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/trunk/pfaat/src/com/neogenesis/pfaat/comparison/ComparisonOptions.java Diff Switch to side-by-side view
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/trunk/pfaat/src/com/neogenesis/pfaat/comparison/ComparisonOptionsDialog.java Diff Switch to side-by-side view
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