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PBJelly Tickets

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Topic	Posts	Views	Last Post
Amount of 25 bp gaps massively increased in jelly.out.fasta By Juhana Kammonen on Tue Jun 02, 2015 12:34 PM	3	803	By Adam English on Fri Nov 06, 2015 09:43 PM
PBJelly "assembly" stage running indefinitely By Kim W. on Thu Jun 04, 2015 07:22 PM	2	505	By Adam English on Fri Nov 06, 2015 09:39 PM
Error in locating .sa file during Jelly.py mapping By Joshua Penalba on Sun Aug 30, 2015 06:07 AM	2	481	By Adam English on Fri Nov 06, 2015 09:28 PM
blasr crash during PBJelly assembly stage By Fawna Melony on Sat Sep 05, 2015 08:46 PM	2	419	By Adam English on Fri Nov 06, 2015 09:25 PM
No improvement after running PBJelly on de novo assembly using PacBio... By ering on Mon Apr 20, 2015 07:26 PM	3	609	By Adam English on Fri Nov 06, 2015 09:14 PM
Anyway to speed up final output step? By Rick Westerman on Mon Oct 26, 2015 03:17 PM	2	457	By Adam English on Fri Nov 06, 2015 09:00 PM
How to estimate the size of filled gaps By Yinping on Tue Nov 25, 2014 09:53 PM	2	547	By Adam English on Fri Nov 06, 2015 08:57 PM
problem of starting PBjelly (jelly_14.1.14) By Yuichi Sakamoto on Wed Apr 09, 2014 04:29 AM	7	1622	By Rick Westerman on Fri Oct 30, 2015 11:57 AM
gapInfo.bed file By RobinBurns on Sat Oct 17, 2015 10:22 PM	2	340	By Adam English on Tue Oct 20, 2015 04:57 PM
Mapping with a single node multi-core machine. First chunk not ending By Raúl Oscar Cosentino on Fri Oct 02, 2015 04:24 PM	2	550	By Adam English on Mon Oct 05, 2015 06:13 PM
setup step of test run gives out "sawriter returned 127" error By Tianqi Li on Thu Jul 23, 2015 09:33 AM	3	563	By Tianqi Li on Mon Jul 27, 2015 01:15 PM
Incomplete output in 1e5 end By jubs on Fri May 29, 2015 03:50 PM	2	368	By Adam English on Fri May 29, 2015 05:02 PM
PBSuite 15.2.20.p1 Bug with multiple mapping jobs and SA index file By eernst on Mon Apr 13, 2015 10:06 PM	2	526	By Adam English on Mon Apr 13, 2015 10:17 PM
PBSuite_15.2.20 Jelly.py output error By Gunnar Hönig on Thu Feb 26, 2015 01:33 PM	6	540	By Gunnar Hönig on Mon Mar 02, 2015 08:35 AM
pbjelly assembly error By crd1859 on Wed Feb 19, 2014 04:02 AM	3	1049	By Steph on Fri Feb 13, 2015 11:35 AM
extraction error (no error message) By Mark on Mon Feb 09, 2015 06:48 AM	4	811	By Adam English on Wed Feb 11, 2015 07:36 PM
Extraction error By Raimi on Mon Jan 26, 2015 02:38 AM	4	714	By Raimi on Sat Jan 31, 2015 06:45 AM
Gap filling metric By Won Cheol Yim on Sun Jan 04, 2015 02:00 AM	1	439	By Won Cheol Yim on Sun Jan 04, 2015 02:00 AM
Split .fastq for mapping By Hsu-Yuan Fu on Fri Oct 31, 2014 05:21 PM	3	550	By Hsu-Yuan Fu on Sun Nov 02, 2014 03:41 AM
Error at the support stage By Hsu-Yuan Fu on Tue Oct 21, 2014 07:02 AM	3	756	By Hsu-Yuan Fu on Tue Oct 21, 2014 05:18 PM
Thread control Issues By Matthew Scholz on Tue Sep 30, 2014 02:05 PM	4	433	By Adam English on Tue Oct 21, 2014 03:31 PM
Extraction phase - networkx condition statement (if >= 1.7) By John Urban on Sat Oct 04, 2014 02:45 PM	1	721	By John Urban on Sat Oct 04, 2014 02:45 PM
q By Matt MacManes on Thu Oct 02, 2014 08:17 PM	1	150	By Matt MacManes on Thu Oct 02, 2014 08:17 PM
Cannot find masterSupport.bml... By Gregory Hannum on Mon Sep 22, 2014 06:23 PM	1	333	By Gregory Hannum on Mon Sep 22, 2014 06:23 PM
Error during mapping stage By crd1859 on Tue Apr 15, 2014 09:00 AM	3	606	By Fish on Mon Sep 22, 2014 09:51 AM

<< < 1 2 3 4 > >> (Page 3 of 4)

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Software for Long-Read Sequencing Data from PacBio

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PBJelly Tickets

Amount of 25 bp gaps massively increased in jelly.out.fasta

PBJelly "assembly" stage running indefinitely

Error in locating .sa file during Jelly.py mapping

blasr crash during PBJelly assembly stage

No improvement after running PBJelly on de novo assembly using PacBio...

Anyway to speed up final output step?

How to estimate the size of filled gaps

problem of starting PBjelly (jelly_14.1.14)

gapInfo.bed file

Mapping with a single node multi-core machine. First chunk not ending

setup step of test run gives out "sawriter returned 127" error

Incomplete output in 1e5 end

PBSuite 15.2.20.p1 Bug with multiple mapping jobs and SA index file

PBSuite_15.2.20 Jelly.py output error

pbjelly assembly error

extraction error (no error message)

Extraction error

Gap filling metric

Split .fastq for mapping

Error at the support stage

Thread control Issues

Extraction phase - networkx condition statement (if >= 1.7)

q

Cannot find masterSupport.bml...

Error during mapping stage

PBSuite Discussion

Software for Long-Read Sequencing Data from PacBio

Forums

Help

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PBJelly Tickets