OSPS

Organism Specific Probe Selection Tools

Brought to you by: aldrinyim

Add a Review

Downloads: 0 This Week

Last Update: 2013-07-24

Download

Get an email when there's a new version of OSPS

OSPS is a pure JAVA-based program (multiple platforms) aims to facilitate biologists to easily design probes to deplete rRNA in an organism-specific manner. We have demonstrated that the designed probes of 16S rRNAs and 23S rRNAs can effectively remove rRNAs from Mycobacterium smegmatis.

Project Samples

Project Activity

See All Activity >

Follow OSPS

OSPS Web Site

Other Useful Business Software

$300 Free Credits to Build on Google Cloud

New customers can spin up VMs, build with AI, and query data at no cost.

Put your $300 in credit toward real workloads, then keep building with free monthly usage for 20+ products. No commitment and no charge until you upgrade.

Start Free

Rate This Project

User Reviews

Be the first to post a review of OSPS!

Additional Project Details

Programming Language

Java

Registered

2013-07-09

Report inappropriate content

$300 Free Credits to Build on Google Cloud

New customers can spin up VMs, build with AI, and query data at no cost.

Put your $300 in credit toward real workloads, then keep building with free monthly usage for 20+ products. No commitment and no charge until you upgrade.

Start Free

Recommended Projects

ProbeMaker
ProbeMaker is a framework for design of sets of oligonucleotide probes. It allows the design of different types of probes made up of separate sequence elements. A Plug-in mechanism allows extension of the framework with new functionalities.
MicrobiomeUtilities
A set of software utilities for processing and analyzing 16S rRNA genes including generating NAST alignments, chimera checking, and assembling paired 16S rRNA reads according to reference sequence homology.
DNA Clust
A tool for clustering large number of short similar DNA sequences. This program is originally designed for clustering targeted 16S rRNA pyrosequencing reads.
DEODAS
DEODAS designs & analyzes consensus-degenerate oligonucleotide probes for biological research. DEODAS automatically designs and screens, probes against databases of known genes & stores the information in a searchable database.
Dynamic Probes
Dynamic Probes is a linux debugging facility that will operate under the most extreme software conditions. It offers a technique for debugging in both kernel and user space by allowing you to insert "probes" in running programs.