#21 NullPointerException and others when running oscar3-a5

[Mohsen Jafari]

I try to process input files in a folder using both pre-compiled version and source code using this command:

java -Xmx512m -jar oscar3-a5.jar ProcessInto /absolute/path/to/source/directory /absolute/path/to/destination/directory

Four exceptions is thrown but it continues to execute and generates the output. I don't know if the output is reliable though. Three of these exceptions is attached to this report. First exception was similar to third one but I missed it.

Thanks,
Mohsen

[Mohsen Jafari]

Exceptions thrown while using oscar3-a5

[Daniel Lowe]

The exceptions appear to relate to the resolution of names to structures.
Nonetheless the output should still be reliable, for 4 names in the document I think the errors indicate that something went wrong in the InChI to CDK molecule conversion and hence at least CML will not be available for these names.