OrthoRBH is a tool/pipeline designed to identify families of protein coding transcripts/genes in related species using a reciprocal blast method. It can search through databases of full-length cDNAs, ESTs or mRNA-seq data. Optional assembly of candidate sequences allows assembly of contigs. It is suited to handling a mixture of EST and mRNA-seq sequence data. It performs batch blast searches, so it is ideal for large multi-gene families. After collecting candidate sequences, it performs sequence alignment and deposits sequences into a fasta sequence file for downstream molecular evolutionary analysis.

Project Activity

See All Activity >

Categories

Bio-Informatics

License

GNU Library or Lesser General Public License version 3.0 (LGPLv3)

Follow OrthoRBH

OrthoRBH Web Site

Other Useful Business Software
Gen AI apps are built with MongoDB Atlas Icon
Gen AI apps are built with MongoDB Atlas

Build gen AI apps with an all-in-one modern database: MongoDB Atlas

MongoDB Atlas provides built-in vector search and a flexible document model so developers can build, scale, and run gen AI apps without stitching together multiple databases. From LLM integration to semantic search, Atlas simplifies your AI architecture—and it’s free to get started.
Start Free
Rate This Project
Login To Rate This Project

User Reviews

Be the first to post a review of OrthoRBH!

Additional Project Details

Operating Systems

Linux

Intended Audience

End Users/Desktop, Science/Research

Programming Language

Unix Shell

Related Categories

Unix Shell Bio-Informatics Software

Registered

2012-07-09