Re: [Open Babel] Prevent warning messages (Python, OB 3.1.0)

[Stefano F. <fo...@sc...>]

Hi Noel,

that worked! For the record, this is the code:
---------
from openbabel import openbabel as ob
ob.obErrorLog.SetOutputLevel(0)
---------

Thank you much for the help!
Happy holidays,

Best,

S

--

 Stefano Forli, PhD

 Assistant Professor

 Dept. of Integrative Structural
 and Computational Biology, MB-112A
 The Scripps Research Institute
 10550  North Torrey Pines Road
 La Jolla,  CA 92037-1000,  USA.

    tel: +1 (858)784-2055
    fax: +1 (858)784-2860
    email: fo...@sc...
    http://www.scripps.edu/~forli/


________________________________________
From: Noel O'Boyle <bao...@gm...>
Sent: Saturday, December 19, 2020 1:40 AM
To: Stefano Forli
Cc: ope...@li...
Subject: Re: [Open Babel] Prevent warning messages (Python, OB 3.1.0)

That creates a new message handler. You need to get hold of the existing one. It's something like obErrorLog. If you use dir() on ob, you will find the exact name.

On Fri, 18 Dec 2020, 23:38 Stefano Forli, <fo...@sc...<mailto:fo...@sc...>> wrote:
Hi,

I'm having a hard time disabling warning messages using the OBMessageHandler class using Python and OB 3.1.0 (installed from Conda):

     ...
     ==============================
     *** Open Babel Warning  in PerceiveBondOrders
       Failed to kekulize aromatic bonds in OBMol::PerceiveBondOrders
     ...

I have tried the following code to suppress the messages with no success (I've stopped the logging after trying changing the output level):

     ob_log = ob.OBMessageHandler()
     ob_log.SetOutputLevel(0)
     ob_log.StopLogging()

Suggestions are welcome.

S

--

  Stefano Forli, PhD

  Assistant Professor
  Dept. of Integrative Structural
  and Computational Biology, MB-112A
  Scripps Research
  10550  North Torrey Pines Road
  La Jolla,  CA 92037-1000,  USA.

     tel: +1 (858)784-2055
     email: fo...@sc...<mailto:fo...@sc...>
     https://forlilab.org



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