Re: [Open Babel] Limits on number of input files

[Geoffrey H. <ge...@ge...>]

On Mar 4, 2009, at 1:01 PM, Noel O'Boyle wrote:
>> FYI, the filenames contain numerous spaces, periods and commas, so  
>> the
>> command line version of babel (which I’ve tried) crashes.  Also, I’m
>> presently stuck doing this in Windows XP.  If I switch to Fedora,  
>> will the
>> command line version ignore punctuations?

The command line version on Fedora (or any UNIX-like system including  
Mac OS X) will be just fine:

babel *.mol -osmi -m

This will take each mol file (anything matching *.mol) and output a  
SMILES file with the extension .smi.

Cheers,
-Geoff