Re: [Open-ms-general] Peak1D cannot be used as a template argument

[Hannes R. <han...@gm...>]

Hi Antonio

Are you using Cython 0.19 or Cython 0.20 ? There is an issue with
Cython 0.20 which we have fixed in the development version but which
is probably still present in the 1.11 version:
https://github.com/OpenMS/OpenMS/commit/32643435f91f18a2c311211a6ac2629f3bafdbb1

can you try to "rm pyOpenMS/addons/EmgFitter1D.pyx" and see whether
that helps your situation?

Hannes


On 30 May 2014 20:02, Antonio Trande <ant...@gm...> wrote:
> -----BEGIN PGP SIGNED MESSAGE-----
> Hash: SHA1
>
> Hi all.
>
> Another compilation error in OpenMS 1.11.1
>
> Linking CXX executable bin/QCMerger
> /usr/bin/cmake -E cmake_link_script CMakeFiles/QCMerger.dir/link.txt
> - --verbose=1
> /usr/lib64/ccache/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2
> - -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4
> - -grecord-gcc-switches  -m64 -mtune=generic  -fopenmp -DNDEBUG
> - -lQtCore -lQtGui
> CMakeFiles/QCMerger.dir/source/APPLICATIONS/UTILS/QCMerger.C.o  -o
> bin/QCMerger -rdynamic lib/libOpenMS.so -lQtOpenGL -lQtSvg -lQtWebKit
> - -lQtTest -lQtXml -lQtSql -lQtNetwork lib/libOpenSwathAlgo.so -lgsl
> - -lgslcblas -lsvm -lm -lxerces-c -lboost_iostreams -lboost_date_time
> - -lboost_math_c99 -lboost_regex -lbz2 -lz -lglpk
> - -Wl,-rpath,/home/sagitter/rpmbuild/BUILD/OpenMS-Release1.11.1/lib
>
> Error compiling Cython file:
> - ------------------------------------------------------------
> ...
>         cdef _String _r = self.inst.get().getProductName()
>         py_result = _cast_const_away(<char*>_r.c_str())
>         return py_result
>
>
>     def fit1d(libcpp_vector[Peak1D] range_, InterpolationModel model):
>                            ^
> - ------------------------------------------------------------
>
> pyopenms/pyopenms.pyx:3047:28: Python object type 'Peak1D' cannot be
> used as a template argument
>
> Same compilation environment reported in this mail
> http://sourceforge.net/p/open-ms/mailman/message/32398927/.
>
> - --
> Antonio Trande
>
> mailto: sagitterATfedoraproject.org
> http://www.fedoraos.worpress.com
> https://fedoraproject.org/wiki/User:Sagitter
> GPG Key: D400D6C4
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