|
From: Hannes R. <han...@gm...> - 2014-05-30 22:45:15
|
Hi Antonio Are you using Cython 0.19 or Cython 0.20 ? There is an issue with Cython 0.20 which we have fixed in the development version but which is probably still present in the 1.11 version: https://github.com/OpenMS/OpenMS/commit/32643435f91f18a2c311211a6ac2629f3bafdbb1 can you try to "rm pyOpenMS/addons/EmgFitter1D.pyx" and see whether that helps your situation? Hannes On 30 May 2014 20:02, Antonio Trande <ant...@gm...> wrote: > -----BEGIN PGP SIGNED MESSAGE----- > Hash: SHA1 > > Hi all. > > Another compilation error in OpenMS 1.11.1 > > Linking CXX executable bin/QCMerger > /usr/bin/cmake -E cmake_link_script CMakeFiles/QCMerger.dir/link.txt > - --verbose=1 > /usr/lib64/ccache/c++ -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 > - -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 > - -grecord-gcc-switches -m64 -mtune=generic -fopenmp -DNDEBUG > - -lQtCore -lQtGui > CMakeFiles/QCMerger.dir/source/APPLICATIONS/UTILS/QCMerger.C.o -o > bin/QCMerger -rdynamic lib/libOpenMS.so -lQtOpenGL -lQtSvg -lQtWebKit > - -lQtTest -lQtXml -lQtSql -lQtNetwork lib/libOpenSwathAlgo.so -lgsl > - -lgslcblas -lsvm -lm -lxerces-c -lboost_iostreams -lboost_date_time > - -lboost_math_c99 -lboost_regex -lbz2 -lz -lglpk > - -Wl,-rpath,/home/sagitter/rpmbuild/BUILD/OpenMS-Release1.11.1/lib > > Error compiling Cython file: > - ------------------------------------------------------------ > ... > cdef _String _r = self.inst.get().getProductName() > py_result = _cast_const_away(<char*>_r.c_str()) > return py_result > > > def fit1d(libcpp_vector[Peak1D] range_, InterpolationModel model): > ^ > - ------------------------------------------------------------ > > pyopenms/pyopenms.pyx:3047:28: Python object type 'Peak1D' cannot be > used as a template argument > > Same compilation environment reported in this mail > http://sourceforge.net/p/open-ms/mailman/message/32398927/. > > - -- > Antonio Trande > > mailto: sagitterATfedoraproject.org > http://www.fedoraos.worpress.com > https://fedoraproject.org/wiki/User:Sagitter > GPG Key: D400D6C4 > -----BEGIN PGP SIGNATURE----- > Version: GnuPG v1 > Comment: Using GnuPG with Thunderbird - http://www.enigmail.net/ > > iQIcBAEBAgAGBQJTiMe1AAoJED2vIvfUANbEIvkQALzjeBoTrcbz8HNih8pj9xcN > jfGSMBnhCapHYyNXwIEAZwEs7byWwkSZrOxiBv6Tfy2agV074abEXh/kW9FCbkae > KfyolNHCPfeHDUZlycbOTzoN9R7pkIu/IvajFPRmAQfp/56pXpPIbIDtNXzQIY1G > g1pNxn/NQlYTOw6iYaU6/fV1UJBgVSVCdGF0kKY6qqu1f4D7sNfJ6TtGvpPU3vfU > HXfW9h35Pk7kMUdv2aPlCK/AqgDCMTJc9tWQQ2UYvz5jNmlr11zzd037NnoLSvcC > hT46J9bVMTdgALIE6iWqzqbUuVAY2OmLDaT/1k6f6WIL+yoSxPIcT0wdzm9wuOk/ > 7lLy/4/G9aI/lg6qmzyHhAI+1gtIMJv2Zb7SCUW59nRjyE5g/tiYimYirGGt3xD2 > AuRrs8NbUKOGUaACiSWfb2I0znvZKEReU16kB1jf2Y5yynlhEXsAG96KsatrqvCZ > DUwG5KcQSV8e5bMT8MwIKHu6gF+lba9qoTauEpCqYt5b3eMGh4zEHEqC3gxPOOuK > aVzcKBzBJZFNTF8OrB623nkjzy1/I+KrwQhOuB0h11JuJ/p0kr1dm81QhEoQp+kF > sKxAxQonUrFQfu2Imlv6/RdapLjTIReyb3RLizWxDRTluPCmPT8b6Xax6A6AOBtk > wVapJrtLt2BbwaNOAwol > =ETho > -----END PGP SIGNATURE----- > > ------------------------------------------------------------------------------ > Time is money. Stop wasting it! Get your web API in 5 minutes. > www.restlet.com/download > http://p.sf.net/sfu/restlet > _______________________________________________ > Open-ms-general mailing list > Ope...@li... > https://lists.sourceforge.net/lists/listinfo/open-ms-general |