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From: <sri...@us...> - 2011-02-07 06:48:46
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Revision: 735
http://opaltoolkit.svn.sourceforge.net/opaltoolkit/?rev=735&view=rev
Author: srikrish
Date: 2011-02-07 06:48:40 +0000 (Mon, 07 Feb 2011)
Log Message:
-----------
added a note about running Tomcat in "headless" mode
Modified Paths:
--------------
trunk/opal/opal2-core/docbook/serversetup.sgml
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From: <j2...@us...> - 2011-02-04 03:08:30
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Revision: 734
http://opaltoolkit.svn.sourceforge.net/opaltoolkit/?rev=734&view=rev
Author: j2ren
Date: 2011-02-04 03:08:24 +0000 (Fri, 04 Feb 2011)
Log Message:
-----------
initial commit
Added Paths:
-----------
trunk/opal/opal-taverna/ftp/
trunk/opal/opal-taverna/ftp/vsftpd.conf
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From: <j2...@us...> - 2011-02-04 03:03:20
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Revision: 733
http://opaltoolkit.svn.sourceforge.net/opaltoolkit/?rev=733&view=rev
Author: j2ren
Date: 2011-02-04 03:03:14 +0000 (Fri, 04 Feb 2011)
Log Message:
-----------
initial commit
Added Paths:
-----------
trunk/opal/opal-taverna/eclipse/
trunk/opal/opal-taverna/eclipse/settings.xml.deploy3rd
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From: <nad...@us...> - 2011-02-03 01:19:26
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Revision: 732
http://opaltoolkit.svn.sourceforge.net/opaltoolkit/?rev=732&view=rev
Author: nadyawilliams
Date: 2011-02-03 01:19:20 +0000 (Thu, 03 Feb 2011)
Log Message:
-----------
update appName
Modified Paths:
--------------
trunk/opal/opal2-core/configs/autodock_config.xml
trunk/opal/opal2-core/configs/autogrid_config.xml
trunk/opal/opal2-core/configs/clustalw_config.xml
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From: <nad...@us...> - 2011-02-02 03:09:57
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Revision: 731
http://opaltoolkit.svn.sourceforge.net/opaltoolkit/?rev=731&view=rev
Author: nadyawilliams
Date: 2011-02-02 03:09:51 +0000 (Wed, 02 Feb 2011)
Log Message:
-----------
update template
Modified Paths:
--------------
trunk/opal/opal2-core/docbook/etc/rocks.dsl.template
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From: <nad...@us...> - 2011-02-02 03:08:02
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Revision: 730
http://opaltoolkit.svn.sourceforge.net/opaltoolkit/?rev=730&view=rev
Author: nadyawilliams
Date: 2011-02-02 03:07:56 +0000 (Wed, 02 Feb 2011)
Log Message:
-----------
update configs
Modified Paths:
--------------
trunk/opal/opal2-core/configs/apbs_parallel_meta_config.xml
trunk/opal/opal2-core/configs/autodock_config.xml
trunk/opal/opal2-core/configs/autogrid_config.xml
trunk/opal/opal2-core/configs/babel_config.xml
trunk/opal/opal2-core/configs/date_config.xml
trunk/opal/opal2-core/configs/mast_config.xml
trunk/opal/opal2-core/configs/meme_config.xml
trunk/opal/opal2-core/configs/pdb2pqr_config.xml
trunk/opal/opal2-core/configs/pdb2pqr_meta_config.xml
trunk/opal/opal2-core/configs/run_autodock.py
trunk/opal/opal2-core/configs/tomtom_config.xml
Added Paths:
-----------
trunk/opal/opal2-core/configs/apbs_config.xml
trunk/opal/opal2-core/configs/cat_config.xml
Removed Paths:
-------------
trunk/opal/opal2-core/configs/apbsOpal_config.xml
trunk/opal/opal2-core/configs/cat.xml
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From: <j2...@us...> - 2011-01-25 01:09:27
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Revision: 729
http://opaltoolkit.svn.sourceforge.net/opaltoolkit/?rev=729&view=rev
Author: j2ren
Date: 2011-01-25 01:09:20 +0000 (Tue, 25 Jan 2011)
Log Message:
-----------
initial commit
Added Paths:
-----------
trunk/opal/opal-vistrails/workflows/
trunk/opal/opal-vistrails/workflows/pdb2qrp_apbs_ws_vt.vt
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From: <j2...@us...> - 2011-01-24 22:10:14
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Revision: 728
http://opaltoolkit.svn.sourceforge.net/opaltoolkit/?rev=728&view=rev
Author: j2ren
Date: 2011-01-24 22:10:08 +0000 (Mon, 24 Jan 2011)
Log Message:
-----------
initial commit
Added Paths:
-----------
trunk/opal/opal2-core/configs/apbs_parallel_meta.txt
trunk/opal/opal2-core/configs/apbs_parallel_meta_config.xml
trunk/opal/opal2-core/configs/pdb2pqr_meta.txt
trunk/opal/opal2-core/configs/pdb2pqr_meta_config.xml
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From: <j2...@us...> - 2011-01-24 21:43:18
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Revision: 727
http://opaltoolkit.svn.sourceforge.net/opaltoolkit/?rev=727&view=rev
Author: j2ren
Date: 2011-01-24 21:43:11 +0000 (Mon, 24 Jan 2011)
Log Message:
-----------
Fixed bug where a long message was causing some errors for MySQL
Modified Paths:
--------------
trunk/opal/opal2-core/src/edu/sdsc/nbcr/opal/manager/MetaServiceJobManager.java
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From: <sri...@us...> - 2010-12-17 19:15:49
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Revision: 726
http://opaltoolkit.svn.sourceforge.net/opaltoolkit/?rev=726&view=rev
Author: srikrish
Date: 2010-12-17 19:15:43 +0000 (Fri, 17 Dec 2010)
Log Message:
-----------
updated todo list and license
Modified Paths:
--------------
trunk/opal/opal2-core/LICENSE
trunk/opal/opal2-core/TODO
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From: <j2...@us...> - 2010-12-16 23:33:19
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Revision: 725
http://opaltoolkit.svn.sourceforge.net/opaltoolkit/?rev=725&view=rev
Author: j2ren
Date: 2010-12-16 23:33:13 +0000 (Thu, 16 Dec 2010)
Log Message:
-----------
added meta service plugin doc
Modified Paths:
--------------
trunk/opal/opal2-core/docbook/scheduler.sgml
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From: <j2...@us...> - 2010-12-16 20:45:18
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Revision: 724
http://opaltoolkit.svn.sourceforge.net/opaltoolkit/?rev=724&view=rev
Author: j2ren
Date: 2010-12-16 20:45:12 +0000 (Thu, 16 Dec 2010)
Log Message:
-----------
very very minor chnage
Modified Paths:
--------------
trunk/opal/opal2-core/src/edu/sdsc/nbcr/opal/manager/MetaServiceJobManager.java
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From: <j2...@us...> - 2010-12-16 20:42:24
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Revision: 723
http://opaltoolkit.svn.sourceforge.net/opaltoolkit/?rev=723&view=rev
Author: j2ren
Date: 2010-12-16 20:42:18 +0000 (Thu, 16 Dec 2010)
Log Message:
-----------
very minor change in log message
Modified Paths:
--------------
trunk/opal/opal2-core/src/edu/sdsc/nbcr/opal/manager/MetaServiceJobManager.java
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From: <j2...@us...> - 2010-12-15 08:50:59
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Revision: 722
http://opaltoolkit.svn.sourceforge.net/opaltoolkit/?rev=722&view=rev
Author: j2ren
Date: 2010-12-15 08:50:53 +0000 (Wed, 15 Dec 2010)
Log Message:
-----------
bug fix - now parallel jobs do not run if numproc requested is larger than # available on remote hosts
Modified Paths:
--------------
trunk/opal/opal2-core/src/edu/sdsc/nbcr/opal/manager/MetaServiceJobManager.java
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From: <j2...@us...> - 2010-12-15 07:55:46
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Revision: 721
http://opaltoolkit.svn.sourceforge.net/opaltoolkit/?rev=721&view=rev
Author: j2ren
Date: 2010-12-15 07:55:40 +0000 (Wed, 15 Dec 2010)
Log Message:
-----------
throw exception if user forgot to add <metaServiceConfig> in app config
Modified Paths:
--------------
trunk/opal/opal2-core/src/edu/sdsc/nbcr/opal/manager/MetaServiceJobManager.java
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From: <j2...@us...> - 2010-12-14 02:36:58
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Revision: 720
http://opaltoolkit.svn.sourceforge.net/opaltoolkit/?rev=720&view=rev
Author: j2ren
Date: 2010-12-14 02:36:52 +0000 (Tue, 14 Dec 2010)
Log Message:
-----------
bug fix - wrong processor variable used before
Modified Paths:
--------------
trunk/opal/opal2-core/src/edu/sdsc/nbcr/opal/manager/MetaServiceJobManager.java
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From: <sri...@us...> - 2010-12-12 01:56:43
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Revision: 719
http://opaltoolkit.svn.sourceforge.net/opaltoolkit/?rev=719&view=rev
Author: srikrish
Date: 2010-12-12 01:56:37 +0000 (Sun, 12 Dec 2010)
Log Message:
-----------
fixing the errors in the calculation of the number of jobs in the usage statistics page
Modified Paths:
--------------
trunk/opal/opal2-core/CHANGELOG
trunk/opal/opal2-core/src/edu/sdsc/nbcr/opal/dashboard/persistence/DBManager.java
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From: <sri...@us...> - 2010-12-12 01:15:03
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Revision: 718
http://opaltoolkit.svn.sourceforge.net/opaltoolkit/?rev=718&view=rev
Author: srikrish
Date: 2010-12-12 01:14:51 +0000 (Sun, 12 Dec 2010)
Log Message:
-----------
fixed the data archiving to ensure that relative paths of subdirs are preserved.
Modified Paths:
--------------
trunk/opal/opal2-core/src/edu/sdsc/nbcr/opal/AppServiceImpl.java
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From: <j2...@us...> - 2010-12-11 06:09:57
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Revision: 717
http://opaltoolkit.svn.sourceforge.net/opaltoolkit/?rev=717&view=rev
Author: j2ren
Date: 2010-12-11 06:09:51 +0000 (Sat, 11 Dec 2010)
Log Message:
-----------
changed printStackTrace to logger.error(...)
Modified Paths:
--------------
trunk/opal/opal2-core/src/edu/sdsc/nbcr/opal/manager/MetaServiceJobManager.java
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From: <j2...@us...> - 2010-12-11 06:06:23
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Revision: 716
http://opaltoolkit.svn.sourceforge.net/opaltoolkit/?rev=716&view=rev
Author: j2ren
Date: 2010-12-11 06:06:17 +0000 (Sat, 11 Dec 2010)
Log Message:
-----------
destroyJob implemented
Modified Paths:
--------------
trunk/opal/opal2-core/src/edu/sdsc/nbcr/opal/manager/MetaServiceJobManager.java
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From: <j2...@us...> - 2010-12-11 05:47:05
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Revision: 715
http://opaltoolkit.svn.sourceforge.net/opaltoolkit/?rev=715&view=rev
Author: j2ren
Date: 2010-12-11 05:46:59 +0000 (Sat, 11 Dec 2010)
Log Message:
-----------
typo fix
Modified Paths:
--------------
trunk/opal/opal2-core/src/edu/sdsc/nbcr/opal/manager/MetaServiceJobManager.java
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From: <j2...@us...> - 2010-12-11 05:43:05
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Revision: 714
http://opaltoolkit.svn.sourceforge.net/opaltoolkit/?rev=714&view=rev
Author: j2ren
Date: 2010-12-11 05:42:59 +0000 (Sat, 11 Dec 2010)
Log Message:
-----------
now using GramJob status instead of numbers
Modified Paths:
--------------
trunk/opal/opal2-core/src/edu/sdsc/nbcr/opal/manager/MetaServiceJobManager.java
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From: <j2...@us...> - 2010-12-11 05:28:12
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Revision: 713
http://opaltoolkit.svn.sourceforge.net/opaltoolkit/?rev=713&view=rev
Author: j2ren
Date: 2010-12-11 05:28:05 +0000 (Sat, 11 Dec 2010)
Log Message:
-----------
nested directory download bug fix
Modified Paths:
--------------
trunk/opal/opal2-core/src/edu/sdsc/nbcr/opal/manager/MetaServiceJobManager.java
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From: <j2...@us...> - 2010-12-11 03:52:57
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Revision: 712
http://opaltoolkit.svn.sourceforge.net/opaltoolkit/?rev=712&view=rev
Author: j2ren
Date: 2010-12-11 03:52:51 +0000 (Sat, 11 Dec 2010)
Log Message:
-----------
fixed bug with missing nested files
Modified Paths:
--------------
trunk/opal/opal2-core/src/edu/sdsc/nbcr/opal/AppServiceImpl.java
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From: <sri...@us...> - 2010-12-11 01:00:05
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Revision: 711
http://opaltoolkit.svn.sourceforge.net/opaltoolkit/?rev=711&view=rev
Author: srikrish
Date: 2010-12-11 00:59:59 +0000 (Sat, 11 Dec 2010)
Log Message:
-----------
getOutputs now support recursive listing of subdirectories. however, there is still a bug in how the directories are listed - needs to be fixed.
Modified Paths:
--------------
trunk/opal/opal2-core/CHANGELOG
trunk/opal/opal2-core/src/edu/sdsc/nbcr/opal/AppServiceImpl.java
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