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From: SourceForge.net <no...@so...> - 2011-05-03 04:54:25
|
Bugs item #3296678, was opened at 2011-05-02 21:54 Message generated for change (Tracker Item Submitted) made by srikrish You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=1019127&aid=3296678&group_id=211778 Please note that this message will contain a full copy of the comment thread, including the initial issue submission, for this request, not just the latest update. Category: Back-end Group: None Status: Open Resolution: None Priority: 5 Private: No Submitted By: Sriram Krishnan (srikrish) Assigned to: Nobody/Anonymous (nobody) Summary: Fix argument validation in the presence of spaces Initial Comment: Apparently, the validation of command-line arguments fails when string parameters contain spaces (even if they are quoted). In this particular case, the separator for the tagged parameters is also a space. Test whether this bug is repeatable, and fix it. ---------------------------------------------------------------------- You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=1019127&aid=3296678&group_id=211778 |
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From: <j2...@us...> - 2011-05-02 22:35:44
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Revision: 759
http://opaltoolkit.svn.sourceforge.net/opaltoolkit/?rev=759&view=rev
Author: j2ren
Date: 2011-05-02 22:35:37 +0000 (Mon, 02 May 2011)
Log Message:
-----------
initial commit - this is the original version that needs to be updated
Added Paths:
-----------
trunk/opal/playground/registry/
trunk/opal/playground/registry/SessionFactoryUtil.java
trunk/opal/playground/registry/lib/
trunk/opal/playground/registry/lib/VERSIONS
trunk/opal/playground/registry/lib/activation-1_0_2.jar
trunk/opal/playground/registry/lib/ant-1.7.0.jar
trunk/opal/playground/registry/lib/antlr-2.7.6.jar
trunk/opal/playground/registry/lib/axis-ant.jar
trunk/opal/playground/registry/lib/axis.LICENSE
trunk/opal/playground/registry/lib/axis.jar
trunk/opal/playground/registry/lib/bouncycastle.LICENSE
trunk/opal/playground/registry/lib/c3p0-0.9.1.2.jar
trunk/opal/playground/registry/lib/c3p0.LICENSE
trunk/opal/playground/registry/lib/cglib-2.1.3.jar
trunk/opal/playground/registry/lib/classad.jar
trunk/opal/playground/registry/lib/cog-axis.jar
trunk/opal/playground/registry/lib/cog-jglobus.jar
trunk/opal/playground/registry/lib/cog-tomcat.jar
trunk/opal/playground/registry/lib/cog-url.jar
trunk/opal/playground/registry/lib/cog.LICENSE
trunk/opal/playground/registry/lib/commons-cli-2.0.jar
trunk/opal/playground/registry/lib/commons-collections-3.1.jar
trunk/opal/playground/registry/lib/commons-discovery-0.2.jar
trunk/opal/playground/registry/lib/commons-logging-1.0.4.jar
trunk/opal/playground/registry/lib/commons.LICENSE
trunk/opal/playground/registry/lib/cryptix-asn1.jar
trunk/opal/playground/registry/lib/cryptix.LICENSE
trunk/opal/playground/registry/lib/cryptix.jar
trunk/opal/playground/registry/lib/cryptix32.jar
trunk/opal/playground/registry/lib/db2jcc.jar
trunk/opal/playground/registry/lib/dom4j-1.6.1.jar
trunk/opal/playground/registry/lib/drmaa.jar
trunk/opal/playground/registry/lib/hibernate3.jar
trunk/opal/playground/registry/lib/hsqldb.jar
trunk/opal/playground/registry/lib/javamail-1.4.3.jar
trunk/opal/playground/registry/lib/javassist-3.4.GA.jar
trunk/opal/playground/registry/lib/jaxrpc.jar
trunk/opal/playground/registry/lib/jce-jdk13-125.jar
trunk/opal/playground/registry/lib/jcommon-1.0.12.jar
trunk/opal/playground/registry/lib/jdom-1.1.jar
trunk/opal/playground/registry/lib/jfreechart-1.0.8.jar
trunk/opal/playground/registry/lib/jgss.jar
trunk/opal/playground/registry/lib/jta-1.1.jar
trunk/opal/playground/registry/lib/junit-4.4.jar
trunk/opal/playground/registry/lib/log4j-1.2.15.jar
trunk/opal/playground/registry/lib/log4j.LICENSE
trunk/opal/playground/registry/lib/log4j.properties
trunk/opal/playground/registry/lib/mailapi-1_3_1.jar
trunk/opal/playground/registry/lib/mysql-connector-java-5.1.8-bin.jar
trunk/opal/playground/registry/lib/mysql.LICENSE
trunk/opal/playground/registry/lib/opal-ws-2.4.jar
trunk/opal/playground/registry/lib/postgres_jdbc.LICENSE
trunk/opal/playground/registry/lib/postgresql-8.2-506.jdbc3.jar
trunk/opal/playground/registry/lib/puretls.LICENSE
trunk/opal/playground/registry/lib/puretls.jar
trunk/opal/playground/registry/lib/rome-1.0RC1.jar
trunk/opal/playground/registry/lib/saaj.jar
trunk/opal/playground/registry/lib/servlet-api-2_4.jar
trunk/opal/playground/registry/lib/slf4j-api-1.5.2.jar
trunk/opal/playground/registry/lib/slf4j-log4j12-1.5.2.jar
trunk/opal/playground/registry/lib/struts/
trunk/opal/playground/registry/lib/struts/README.txt
trunk/opal/playground/registry/lib/struts/commons-beanutils-1.7.0.jar
trunk/opal/playground/registry/lib/struts/commons-chain-1.1.jar
trunk/opal/playground/registry/lib/struts/commons-digester-1.8.jar
trunk/opal/playground/registry/lib/struts/commons-fileupload-1.2.jar
trunk/opal/playground/registry/lib/struts/commons-io-1.1.jar
trunk/opal/playground/registry/lib/struts/commons-validator-1.3.1.jar
trunk/opal/playground/registry/lib/struts/jstl.jar
trunk/opal/playground/registry/lib/struts/oro-2.0.8.jar
trunk/opal/playground/registry/lib/struts/standard.jar
trunk/opal/playground/registry/lib/struts/struts-core-1.3.8.jar
trunk/opal/playground/registry/lib/struts/struts-extras-1.3.8.jar
trunk/opal/playground/registry/lib/struts/struts-taglib-1.3.8.jar
trunk/opal/playground/registry/lib/wsdl4j-1.5.1.jar
trunk/opal/playground/registry/lib/wsdl4j.LICENSE
trunk/opal/playground/registry/lib/xalan-2.7.0.jar
trunk/opal/playground/registry/lib/xercesImpl.jar
trunk/opal/playground/registry/reg/
trunk/opal/playground/registry/reg/Host.hbm.xml
trunk/opal/playground/registry/reg/Host.java
trunk/opal/playground/registry/reg/Registry.java
trunk/opal/playground/registry/reg/RegistryClient.java
trunk/opal/playground/registry/reg/cmd.sh
trunk/opal/playground/registry/reg/cp.sh
trunk/opal/playground/registry/reg/ct.sql
trunk/opal/playground/registry/reg/hibernate.cfg.xml
trunk/opal/playground/registry/reg/hosts.txt
trunk/opal/playground/registry/reg/registry.xml
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From: <sri...@us...> - 2011-04-28 18:50:50
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Revision: 758
http://opaltoolkit.svn.sourceforge.net/opaltoolkit/?rev=758&view=rev
Author: srikrish
Date: 2011-04-28 18:50:44 +0000 (Thu, 28 Apr 2011)
Log Message:
-----------
place holder for app engine code
Added Paths:
-----------
trunk/opal/opal-gae/
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From: <j2...@us...> - 2011-04-28 18:31:59
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Revision: 757
http://opaltoolkit.svn.sourceforge.net/opaltoolkit/?rev=757&view=rev
Author: j2ren
Date: 2011-04-28 18:31:52 +0000 (Thu, 28 Apr 2011)
Log Message:
-----------
initial commit
Added Paths:
-----------
trunk/opal/opal-taverna/workflows/
trunk/opal/opal-taverna/workflows/pdb2pqr.t2flow
trunk/opal/opal-taverna/workflows/pdb2pqr_pdbqt.t2flow
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From: <nad...@us...> - 2011-04-19 20:12:13
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Revision: 756
http://opaltoolkit.svn.sourceforge.net/opaltoolkit/?rev=756&view=rev
Author: nadyawilliams
Date: 2011-04-19 20:12:05 +0000 (Tue, 19 Apr 2011)
Log Message:
-----------
close font tags
Modified Paths:
--------------
trunk/opal/opal-py/docs/index.html
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From: <j2...@us...> - 2011-04-13 21:47:28
|
Revision: 755
http://opaltoolkit.svn.sourceforge.net/opaltoolkit/?rev=755&view=rev
Author: j2ren
Date: 2011-04-13 21:47:21 +0000 (Wed, 13 Apr 2011)
Log Message:
-----------
bug fix - getAllOutputs was throwing in exception for output files that were symbolic links
Modified Paths:
--------------
trunk/opal/opal2-core/src/edu/sdsc/nbcr/opal/AppServiceImpl.java
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From: <j2...@us...> - 2011-04-12 23:35:45
|
Revision: 754
http://opaltoolkit.svn.sourceforge.net/opaltoolkit/?rev=754&view=rev
Author: j2ren
Date: 2011-04-12 23:35:38 +0000 (Tue, 12 Apr 2011)
Log Message:
-----------
initial commit
Added Paths:
-----------
trunk/opal/opal-taverna/maven2_site/
trunk/opal/opal-taverna/maven2_site/edu/
trunk/opal/opal-taverna/maven2_site/edu/sdsc/
trunk/opal/opal-taverna/maven2_site/edu/sdsc/nbcr/
trunk/opal/opal-taverna/maven2_site/edu/sdsc/nbcr/opal/
trunk/opal/opal-taverna/maven2_site/edu/sdsc/nbcr/opal/2.0/
trunk/opal/opal-taverna/maven2_site/edu/sdsc/nbcr/opal/2.0/opal-2.0.jar
trunk/opal/opal-taverna/maven2_site/edu/sdsc/nbcr/opal/2.0/opal-2.0.jar.md5
trunk/opal/opal-taverna/maven2_site/edu/sdsc/nbcr/opal/2.0/opal-2.0.jar.sha1
trunk/opal/opal-taverna/maven2_site/edu/sdsc/nbcr/opal/2.0/opal-2.0.pom
trunk/opal/opal-taverna/maven2_site/edu/sdsc/nbcr/opal/2.0/opal-2.0.pom.md5
trunk/opal/opal-taverna/maven2_site/edu/sdsc/nbcr/opal/2.0/opal-2.0.pom.sha1
trunk/opal/opal-taverna/maven2_site/edu/sdsc/nbcr/opal/maven-metadata.xml
trunk/opal/opal-taverna/maven2_site/edu/sdsc/nbcr/opal/maven-metadata.xml.md5
trunk/opal/opal-taverna/maven2_site/edu/sdsc/nbcr/opal/maven-metadata.xml.sha1
trunk/opal/opal-taverna/maven2_site/edu/sdsc/nbcr/opal-activity/
trunk/opal/opal-taverna/maven2_site/edu/sdsc/nbcr/opal-activity/0.0.1/
trunk/opal/opal-taverna/maven2_site/edu/sdsc/nbcr/opal-activity/0.0.1/opal-activity-0.0.1-sources.jar
trunk/opal/opal-taverna/maven2_site/edu/sdsc/nbcr/opal-activity/0.0.1/opal-activity-0.0.1-sources.jar.md5
trunk/opal/opal-taverna/maven2_site/edu/sdsc/nbcr/opal-activity/0.0.1/opal-activity-0.0.1-sources.jar.sha1
trunk/opal/opal-taverna/maven2_site/edu/sdsc/nbcr/opal-activity/0.0.1/opal-activity-0.0.1-test-sources.jar
trunk/opal/opal-taverna/maven2_site/edu/sdsc/nbcr/opal-activity/0.0.1/opal-activity-0.0.1-test-sources.jar.md5
trunk/opal/opal-taverna/maven2_site/edu/sdsc/nbcr/opal-activity/0.0.1/opal-activity-0.0.1-test-sources.jar.sha1
trunk/opal/opal-taverna/maven2_site/edu/sdsc/nbcr/opal-activity/0.0.1/opal-activity-0.0.1.jar
trunk/opal/opal-taverna/maven2_site/edu/sdsc/nbcr/opal-activity/0.0.1/opal-activity-0.0.1.jar.md5
trunk/opal/opal-taverna/maven2_site/edu/sdsc/nbcr/opal-activity/0.0.1/opal-activity-0.0.1.jar.sha1
trunk/opal/opal-taverna/maven2_site/edu/sdsc/nbcr/opal-activity/0.0.1/opal-activity-0.0.1.pom
trunk/opal/opal-taverna/maven2_site/edu/sdsc/nbcr/opal-activity/0.0.1/opal-activity-0.0.1.pom.md5
trunk/opal/opal-taverna/maven2_site/edu/sdsc/nbcr/opal-activity/0.0.1/opal-activity-0.0.1.pom.sha1
trunk/opal/opal-taverna/maven2_site/edu/sdsc/nbcr/opal-activity/maven-metadata.xml
trunk/opal/opal-taverna/maven2_site/edu/sdsc/nbcr/opal-activity/maven-metadata.xml.md5
trunk/opal/opal-taverna/maven2_site/edu/sdsc/nbcr/opal-activity/maven-metadata.xml.sha1
trunk/opal/opal-taverna/maven2_site/edu/sdsc/nbcr/opal-activity-ui/
trunk/opal/opal-taverna/maven2_site/edu/sdsc/nbcr/opal-activity-ui/0.0.1/
trunk/opal/opal-taverna/maven2_site/edu/sdsc/nbcr/opal-activity-ui/0.0.1/opal-activity-ui-0.0.1-sources.jar
trunk/opal/opal-taverna/maven2_site/edu/sdsc/nbcr/opal-activity-ui/0.0.1/opal-activity-ui-0.0.1-sources.jar.md5
trunk/opal/opal-taverna/maven2_site/edu/sdsc/nbcr/opal-activity-ui/0.0.1/opal-activity-ui-0.0.1-sources.jar.sha1
trunk/opal/opal-taverna/maven2_site/edu/sdsc/nbcr/opal-activity-ui/0.0.1/opal-activity-ui-0.0.1-test-sources.jar
trunk/opal/opal-taverna/maven2_site/edu/sdsc/nbcr/opal-activity-ui/0.0.1/opal-activity-ui-0.0.1-test-sources.jar.md5
trunk/opal/opal-taverna/maven2_site/edu/sdsc/nbcr/opal-activity-ui/0.0.1/opal-activity-ui-0.0.1-test-sources.jar.sha1
trunk/opal/opal-taverna/maven2_site/edu/sdsc/nbcr/opal-activity-ui/0.0.1/opal-activity-ui-0.0.1.jar
trunk/opal/opal-taverna/maven2_site/edu/sdsc/nbcr/opal-activity-ui/0.0.1/opal-activity-ui-0.0.1.jar.md5
trunk/opal/opal-taverna/maven2_site/edu/sdsc/nbcr/opal-activity-ui/0.0.1/opal-activity-ui-0.0.1.jar.sha1
trunk/opal/opal-taverna/maven2_site/edu/sdsc/nbcr/opal-activity-ui/0.0.1/opal-activity-ui-0.0.1.pom
trunk/opal/opal-taverna/maven2_site/edu/sdsc/nbcr/opal-activity-ui/0.0.1/opal-activity-ui-0.0.1.pom.md5
trunk/opal/opal-taverna/maven2_site/edu/sdsc/nbcr/opal-activity-ui/0.0.1/opal-activity-ui-0.0.1.pom.sha1
trunk/opal/opal-taverna/maven2_site/edu/sdsc/nbcr/opal-activity-ui/maven-metadata.xml
trunk/opal/opal-taverna/maven2_site/edu/sdsc/nbcr/opal-activity-ui/maven-metadata.xml.md5
trunk/opal/opal-taverna/maven2_site/edu/sdsc/nbcr/opal-activity-ui/maven-metadata.xml.sha1
trunk/opal/opal-taverna/maven2_site/edu/sdsc/nbcr/opal-taverna/
trunk/opal/opal-taverna/maven2_site/edu/sdsc/nbcr/opal-taverna/0.0.1/
trunk/opal/opal-taverna/maven2_site/edu/sdsc/nbcr/opal-taverna/0.0.1/opal-taverna-0.0.1.pom
trunk/opal/opal-taverna/maven2_site/edu/sdsc/nbcr/opal-taverna/0.0.1/opal-taverna-0.0.1.pom.md5
trunk/opal/opal-taverna/maven2_site/edu/sdsc/nbcr/opal-taverna/0.0.1/opal-taverna-0.0.1.pom.sha1
trunk/opal/opal-taverna/maven2_site/edu/sdsc/nbcr/opal-taverna/maven-metadata.xml
trunk/opal/opal-taverna/maven2_site/edu/sdsc/nbcr/opal-taverna/maven-metadata.xml.md5
trunk/opal/opal-taverna/maven2_site/edu/sdsc/nbcr/opal-taverna/maven-metadata.xml.sha1
trunk/opal/opal-taverna/maven2_site/opal-taverna-0.0.1.xml
trunk/opal/opal-taverna/maven2_site/p
trunk/opal/opal-taverna/maven2_site/pluginlist.xml
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From: <j2...@us...> - 2011-04-08 23:18:27
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Revision: 753
http://opaltoolkit.svn.sourceforge.net/opaltoolkit/?rev=753&view=rev
Author: j2ren
Date: 2011-04-08 23:18:21 +0000 (Fri, 08 Apr 2011)
Log Message:
-----------
shortened some logger messages to prevent problems with mysql length limit
Modified Paths:
--------------
trunk/opal/opal2-core/src/edu/sdsc/nbcr/opal/manager/MetaServiceJobManager.java
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From: <j2...@us...> - 2011-04-07 18:03:48
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Revision: 752
http://opaltoolkit.svn.sourceforge.net/opaltoolkit/?rev=752&view=rev
Author: j2ren
Date: 2011-04-07 18:03:42 +0000 (Thu, 07 Apr 2011)
Log Message:
-----------
bug fix - it used to be if a output dir does not have read permission (sometimes we want to hide files), then a null pointer exception is thrown
Modified Paths:
--------------
trunk/opal/opal2-core/src/edu/sdsc/nbcr/opal/AppServiceImpl.java
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From: <j2...@us...> - 2011-04-06 21:39:04
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Revision: 751
http://opaltoolkit.svn.sourceforge.net/opaltoolkit/?rev=751&view=rev
Author: j2ren
Date: 2011-04-06 21:38:58 +0000 (Wed, 06 Apr 2011)
Log Message:
-----------
minor change - removed some unnecessary logger messages
Modified Paths:
--------------
trunk/opal/opal2-core/src/edu/sdsc/nbcr/opal/AppServiceImpl.java
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From: <j2...@us...> - 2011-04-06 21:37:27
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Revision: 750
http://opaltoolkit.svn.sourceforge.net/opaltoolkit/?rev=750&view=rev
Author: j2ren
Date: 2011-04-06 21:37:21 +0000 (Wed, 06 Apr 2011)
Log Message:
-----------
Fixed getOutputs for nested outdirs and problems with same file name in different dirs
Modified Paths:
--------------
trunk/opal/opal2-core/src/edu/sdsc/nbcr/opal/AppServiceImpl.java
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From: <j2...@us...> - 2011-04-06 19:49:46
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Revision: 749
http://opaltoolkit.svn.sourceforge.net/opaltoolkit/?rev=749&view=rev
Author: j2ren
Date: 2011-04-06 19:49:35 +0000 (Wed, 06 Apr 2011)
Log Message:
-----------
initial commit
Added Paths:
-----------
trunk/opal/opal-taverna/eclipse/workspace/
trunk/opal/opal-taverna/eclipse/workspace/jars/
trunk/opal/opal-taverna/eclipse/workspace/jars/activities-plugin-2.2.0.jar
trunk/opal/opal-taverna/eclipse/workspace/jars/activity-tools-1.2.jar
trunk/opal/opal-taverna/eclipse/workspace/jars/workbench-common-2.2.0.jar
trunk/opal/opal-taverna/eclipse/workspace/myfancytool-taverna/
trunk/opal/opal-taverna/eclipse/workspace/myfancytool-taverna/.project
trunk/opal/opal-taverna/eclipse/workspace/myfancytool-taverna/.settings/
trunk/opal/opal-taverna/eclipse/workspace/myfancytool-taverna/.settings/org.maven.ide.eclipse.prefs
trunk/opal/opal-taverna/eclipse/workspace/myfancytool-taverna/command
trunk/opal/opal-taverna/eclipse/workspace/myfancytool-taverna/example-activity/
trunk/opal/opal-taverna/eclipse/workspace/myfancytool-taverna/example-activity/.classpath
trunk/opal/opal-taverna/eclipse/workspace/myfancytool-taverna/example-activity/.project
trunk/opal/opal-taverna/eclipse/workspace/myfancytool-taverna/example-activity/.settings/
trunk/opal/opal-taverna/eclipse/workspace/myfancytool-taverna/example-activity/.settings/org.eclipse.jdt.core.prefs
trunk/opal/opal-taverna/eclipse/workspace/myfancytool-taverna/example-activity/.settings/org.maven.ide.eclipse.prefs
trunk/opal/opal-taverna/eclipse/workspace/myfancytool-taverna/example-activity/pom.xml
trunk/opal/opal-taverna/eclipse/workspace/myfancytool-taverna/example-activity/src/
trunk/opal/opal-taverna/eclipse/workspace/myfancytool-taverna/example-activity/src/main/
trunk/opal/opal-taverna/eclipse/workspace/myfancytool-taverna/example-activity/src/main/java/
trunk/opal/opal-taverna/eclipse/workspace/myfancytool-taverna/example-activity/src/main/java/uk/
trunk/opal/opal-taverna/eclipse/workspace/myfancytool-taverna/example-activity/src/main/java/uk/ac/
trunk/opal/opal-taverna/eclipse/workspace/myfancytool-taverna/example-activity/src/main/java/uk/ac/manchester/
trunk/opal/opal-taverna/eclipse/workspace/myfancytool-taverna/example-activity/src/main/java/uk/ac/manchester/cs/
trunk/opal/opal-taverna/eclipse/workspace/myfancytool-taverna/example-activity/src/main/java/uk/ac/manchester/cs/img/
trunk/opal/opal-taverna/eclipse/workspace/myfancytool-taverna/example-activity/src/main/java/uk/ac/manchester/cs/img/myfancytool/
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trunk/opal/opal-taverna/eclipse/workspace/myfancytool-taverna/example-activity-ui/target/dependency/raven-2.2.jar
trunk/opal/opal-taverna/eclipse/workspace/myfancytool-taverna/example-activity-ui/target/dependency/raven-log4j-1.9.jar
trunk/opal/opal-taverna/eclipse/workspace/myfancytool-taverna/example-activity-ui/target/dependency/raven-log4j-2.2.jar
trunk/opal/opal-taverna/eclipse/workspace/myfancytool-taverna/example-activity-ui/target/dependency/reference-api-1.2.jar
trunk/opal/opal-taverna/eclipse/workspace/myfancytool-taverna/example-activity-ui/target/dependency/reference-core-extensions-1.2.jar
trunk/opal/opal-taverna/eclipse/workspace/myfancytool-taverna/example-activity-ui/target/dependency/reference-impl-1.2.jar
trunk/opal/opal-taverna/eclipse/workspace/myfancytool-taverna/example-activity-ui/target/dependency/reference-ui-1.2.jar
trunk/opal/opal-taverna/eclipse/workspace/myfancytool-taverna/example-activity-ui/target/dependency/renderers-api-1.2.jar
trunk/opal/opal-taverna/eclipse/workspace/myfancytool-taverna/example-activity-ui/target/dependency/renderers-exts-1.2.jar
trunk/opal/opal-taverna/eclipse/workspace/myfancytool-taverna/example-activity-ui/target/dependency/renderers-impl-1.2.jar
trunk/opal/opal-taverna/eclipse/workspace/myfancytool-taverna/example-activity-ui/target/dependency/report-api-1.2.jar
trunk/opal/opal-taverna/eclipse/workspace/myfancytool-taverna/example-activity-ui/target/dependency/report-explainer-1.2.jar
trunk/opal/opal-taverna/eclipse/workspace/myfancytool-taverna/example-activity-ui/target/dependency/report-view-1.2.jar
trunk/opal/opal-taverna/eclipse/workspace/myfancytool-taverna/example-activity-ui/target/dependency/results-view-1.2.jar
trunk/opal/opal-taverna/eclipse/workspace/myfancytool-taverna/example-activity-ui/target/dependency/retry-ui-1.2.jar
trunk/opal/opal-taverna/eclipse/workspace/myfancytool-taverna/example-activity-ui/target/dependency/run-ui-1.2.jar
trunk/opal/opal-taverna/eclipse/workspace/myfancytool-taverna/example-activity-ui/target/dependency/runtime-0.2.RC1.jar
trunk/opal/opal-taverna/eclipse/workspace/myfancytool-taverna/example-activity-ui/target/dependency/saxpath-1.0-FCS.jar
trunk/opal/opal-taverna/eclipse/workspace/myfancytool-taverna/example-activity-ui/target/dependency/seqvista-hacked-NO-VERSION.jar
trunk/opal/opal-taverna/eclipse/workspace/myfancytool-taverna/example-activity-ui/target/dependency/simple-jndi-0.11.1.jar
trunk/opal/opal-taverna/eclipse/workspace/myfancytool-taverna/example-activity-ui/target/dependency/slf4j-api-1.5.6.jar
trunk/opal/opal-taverna/eclipse/workspace/myfancytool-taverna/example-activity-ui/target/dependency/slf4j-log4j12-1.5.6.jar
trunk/opal/opal-taverna/eclipse/workspace/myfancytool-taverna/example-activity-ui/target/dependency/spi-discovery-api-2.2.jar
trunk/opal/opal-taverna/eclipse/workspace/myfancytool-taverna/example-activity-ui/target/dependency/spring-aop-2.5.4.jar
trunk/opal/opal-taverna/eclipse/workspace/myfancytool-taverna/example-activity-ui/target/dependency/spring-beans-2.5.4.jar
trunk/opal/opal-taverna/eclipse/workspace/myfancytool-taverna/example-activity-ui/target/dependency/spring-context-2.5.4.jar
trunk/opal/opal-taverna/eclipse/workspace/myfancytool-taverna/example-activity-ui/target/dependency/spring-core-2.5.4.jar
trunk/opal/opal-taverna/eclipse/workspace/myfancytool-taverna/example-activity-ui/target/dependency/spring-jdbc-2.5.4.jar
trunk/opal/opal-taverna/eclipse/workspace/myfancytool-taverna/example-activity-ui/target/dependency/spring-orm-2.5.4.jar
trunk/opal/opal-taverna/eclipse/workspace/myfancytool-taverna/example-activity-ui/target/dependency/spring-tx-2.5.4.jar
trunk/opal/opal-taverna/eclipse/workspace/myfancytool-taverna/example-activity-ui/target/dependency/stax-api-1.0-2.jar
trunk/opal/opal-taverna/eclipse/workspace/myfancytool-taverna/example-activity-ui/target/dependency/stax-api-1.0.jar
trunk/opal/opal-taverna/eclipse/workspace/myfancytool-taverna/example-activity-ui/target/dependency/stringconstant-activity-1.2.jar
trunk/opal/opal-taverna/eclipse/workspace/myfancytool-taverna/example-activity-ui/target/dependency/stringconstant-activity-ui-1.2.jar
trunk/opal/opal-taverna/eclipse/workspace/myfancytool-taverna/example-activity-ui/target/dependency/swingworker-1.2-2.jar
trunk/opal/opal-taverna/eclipse/workspace/myfancytool-taverna/example-activity-ui/target/dependency/taverna-bootstrap-1.7.2.2.jar
trunk/opal/opal-taverna/eclipse/workspace/myfancytool-taverna/example-activity-ui/target/dependency/taverna-core-1.7.2.2.jar
trunk/opal/opal-taverna/eclipse/workspace/myfancytool-taverna/example-activity-ui/target/dependency/toolbox-1.0.3.jar
trunk/opal/opal-taverna/eclipse/workspace/myfancytool-taverna/example-activity-ui/target/dependency/tupelo-1.0.3.jar
trunk/opal/opal-taverna/eclipse/workspace/myfancytool-taverna/example-activity-ui/target/dependency/tupelo-cet-2.4.3.jar
trunk/opal/opal-taverna/eclipse/workspace/myfancytool-taverna/example-activity-ui/target/dependency/tupelo-kernel-2.4.3.jar
trunk/opal/opal-taverna/eclipse/workspace/myfancytool-taverna/example-activity-ui/target/dependency/tupelo-util-2.4.3.jar
trunk/opal/opal-taverna/eclipse/workspace/myfancytool-taverna/example-activity-ui/target/dependency/ui-1.1.jar
trunk/opal/opal-taverna/eclipse/workspace/myfancytool-taverna/example-activity-ui/target/dependency/uibuilder-1.1.jar
trunk/opal/opal-taverna/eclipse/workspace/myfancytool-taverna/example-activity-ui/target/dependency/unrecognized-activity-ui-1.2.jar
trunk/opal/opal-taverna/eclipse/workspace/myfancytool-taverna/example-activity-ui/target/dependency/update-manager-1.2.jar
trunk/opal/opal-taverna/eclipse/workspace/myfancytool-taverna/example-activity-ui/target/dependency/workbench-api-1.2.jar
trunk/opal/opal-taverna/eclipse/workspace/myfancytool-taverna/example-activity-ui/target/dependency/workbench-common-2.2.0.jar
trunk/opal/opal-taverna/eclipse/workspace/myfancytool-taverna/example-activity-ui/target/dependency/workbench-dev-2.2.0.jar
trunk/opal/opal-taverna/eclipse/workspace/myfancytool-taverna/example-activity-ui/target/dependency/workbench-impl-1.2.jar
trunk/opal/opal-taverna/eclipse/workspace/myfancytool-taverna/example-activity-ui/target/dependency/workflow-explorer-1.2.jar
trunk/opal/opal-taverna/eclipse/workspace/myfancytool-taverna/example-activity-ui/target/dependency/workflow-view-1.2.jar
trunk/opal/opal-taverna/eclipse/workspace/myfancytool-taverna/example-activity-ui/target/dependency/workflowmodel-api-1.2.jar
trunk/opal/opal-taverna/eclipse/workspace/myfancytool-taverna/example-activity-ui/target/dependency/workflowmodel-impl-1.2.jar
trunk/opal/opal-taverna/eclipse/workspace/myfancytool-taverna/example-activity-ui/target/dependency/xalan-2.6.0.jar
trunk/opal/opal-taverna/eclipse/workspace/myfancytool-taverna/example-activity-ui/target/dependency/xercesImpl-2.7.1.jar
trunk/opal/opal-taverna/eclipse/workspace/myfancytool-taverna/example-activity-ui/target/dependency/xml-apis-1.0.b2.jar
trunk/opal/opal-taverna/eclipse/workspace/myfancytool-taverna/example-activity-ui/target/dependency/xml-apis-ext-1.3.04.jar
trunk/opal/opal-taverna/eclipse/workspace/myfancytool-taverna/example-activity-ui/target/dependency/xmlbeans-2.4.0.jar
trunk/opal/opal-taverna/eclipse/workspace/myfancytool-taverna/example-activity-ui/target/dependency/xmlgraphics-commons-1.2.jar
trunk/opal/opal-taverna/eclipse/workspace/myfancytool-taverna/example-activity-ui/target/dependency/xpp3_min-1.1.3.4.O.jar
trunk/opal/opal-taverna/eclipse/workspace/myfancytool-taverna/example-activity-ui/target/dependency/xstream-1.2.1.jar
trunk/opal/opal-taverna/eclipse/workspace/myfancytool-taverna/example-activity-ui/target/dependency/zaria-1.2.jar
trunk/opal/opal-taverna/eclipse/workspace/myfancytool-taverna/example-activity-ui/target/example-activity-ui-0.0.1-SNAPSHOT-sources.jar
trunk/opal/opal-taverna/eclipse/workspace/myfancytool-taverna/example-activity-ui/target/example-activity-ui-0.0.1-SNAPSHOT-test-sources.jar
trunk/opal/opal-taverna/eclipse/workspace/myfancytool-taverna/example-activity-ui/target/example-activity-ui-0.0.1-SNAPSHOT.jar
trunk/opal/opal-taverna/eclipse/workspace/myfancytool-taverna/example-activity-ui/target/example-activity-ui-0.0.1-sources.jar
trunk/opal/opal-taverna/eclipse/workspace/myfancytool-taverna/example-activity-ui/target/example-activity-ui-0.0.1-test-sources.jar
trunk/opal/opal-taverna/eclipse/workspace/myfancytool-taverna/example-activity-ui/target/example-activity-ui-0.0.1.jar
trunk/opal/opal-taverna/eclipse/workspace/myfancytool-taverna/example-activity-ui/target/maven-archiver/
trunk/opal/opal-taverna/eclipse/workspace/myfancytool-taverna/example-activity-ui/target/maven-archiver/pom.properties
trunk/opal/opal-taverna/eclipse/workspace/myfancytool-taverna/example-activity-ui/target/opal-activity-ui-0.0.1-sources.jar
trunk/opal/opal-taverna/eclipse/workspace/myfancytool-taverna/example-activity-ui/target/opal-activity-ui-0.0.1-test-sources.jar
trunk/opal/opal-taverna/eclipse/workspace/myfancytool-taverna/example-activity-ui/target/opal-activity-ui-0.0.1-tests.jar
trunk/opal/opal-taverna/eclipse/workspace/myfancytool-taverna/example-activity-ui/target/opal-activity-ui-0.0.1.jar
trunk/opal/opal-taverna/eclipse/workspace/myfancytool-taverna/example-activity-ui/target/test-classes/
trunk/opal/opal-taverna/eclipse/workspace/myfancytool-taverna/example-activity-ui/target/test-classes/uk/
trunk/opal/opal-taverna/eclipse/workspace/myfancytool-taverna/example-activity-ui/target/test-classes/uk/ac/
trunk/opal/opal-taverna/eclipse/workspace/myfancytool-taverna/example-activity-ui/target/test-classes/uk/ac/manchester/
trunk/opal/opal-taverna/eclipse/workspace/myfancytool-taverna/example-activity-ui/target/test-classes/uk/ac/manchester/cs/
trunk/opal/opal-taverna/eclipse/workspace/myfancytool-taverna/example-activity-ui/target/test-classes/uk/ac/manchester/cs/img/
trunk/opal/opal-taverna/eclipse/workspace/myfancytool-taverna/example-activity-ui/target/test-classes/uk/ac/manchester/cs/img/myfancytool/
trunk/opal/opal-taverna/eclipse/workspace/myfancytool-taverna/example-activity-ui/target/test-classes/uk/ac/manchester/cs/img/myfancytool/taverna/
trunk/opal/opal-taverna/eclipse/workspace/myfancytool-taverna/example-activity-ui/target/test-classes/uk/ac/manchester/cs/img/myfancytool/taverna/ui/
trunk/opal/opal-taverna/eclipse/workspace/myfancytool-taverna/example-activity-ui/target/test-classes/uk/ac/manchester/cs/img/myfancytool/taverna/ui/TavernaWorkbenchWithExamplePlugin.class
trunk/opal/opal-taverna/eclipse/workspace/myfancytool-taverna/pom.xml
trunk/opal/opal-taverna/eclipse/workspace/myfancytool-taverna/pom.xml.copy
trunk/opal/opal-taverna/eclipse/workspace/myfancytool-taverna/pom.xml.test
trunk/opal/opal-taverna/eclipse/workspace/myfancytool-taverna/target/
trunk/opal/opal-taverna/eclipse/workspace/myfancytool-taverna/target/dependency/
trunk/opal/opal-taverna/eclipse/workspace/myfancytool-taverna/target/dependency/junit-4.4.jar
trunk/opal/opal-taverna/eclipse/workspace/myfancytool-taverna/target/maven-archiver/
trunk/opal/opal-taverna/eclipse/workspace/myfancytool-taverna/target/maven-archiver/pom.properties
trunk/opal/opal-taverna/eclipse/workspace/myfancytool-taverna/target/myfancytool-taverna-0.0.1-SNAPSHOT-tests.jar
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From: <sri...@us...> - 2011-03-17 23:44:58
|
Revision: 748
http://opaltoolkit.svn.sourceforge.net/opaltoolkit/?rev=748&view=rev
Author: srikrish
Date: 2011-03-17 23:44:51 +0000 (Thu, 17 Mar 2011)
Log Message:
-----------
changed the way job completions are checked for in SVN. "E" is not error - it may have stood for error in previous versions of PBS.
Modified Paths:
--------------
trunk/opal/opal2-core/src/edu/sdsc/nbcr/opal/manager/PBSJobManager.java
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From: <nad...@us...> - 2011-02-17 23:34:25
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Revision: 747
http://opaltoolkit.svn.sourceforge.net/opaltoolkit/?rev=747&view=rev
Author: nadyawilliams
Date: 2011-02-17 23:34:19 +0000 (Thu, 17 Feb 2011)
Log Message:
-----------
rename and update email address
Added Paths:
-----------
trunk/opal/roll_announce
Removed Paths:
-------------
trunk/opal/opal_roll_announce
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From: <nad...@us...> - 2011-02-17 01:06:04
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Revision: 746
http://opaltoolkit.svn.sourceforge.net/opaltoolkit/?rev=746&view=rev
Author: nadyawilliams
Date: 2011-02-17 01:05:58 +0000 (Thu, 17 Feb 2011)
Log Message:
-----------
roll announcement text
Added Paths:
-----------
trunk/opal/opal_roll_announce
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From: <sri...@us...> - 2011-02-09 04:17:42
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Revision: 745
http://opaltoolkit.svn.sourceforge.net/opaltoolkit/?rev=745&view=rev
Author: srikrish
Date: 2011-02-09 04:17:36 +0000 (Wed, 09 Feb 2011)
Log Message:
-----------
tagging new release
Added Paths:
-----------
tags/opal2-core-2.4/
tags/opal2-core-2.4/CHANGELOG
tags/opal2-core-2.4/TODO
tags/opal2-core-2.4/build.xml
tags/opal2-core-2.4/docbook/serversetup.sgml
Removed Paths:
-------------
tags/opal2-core-2.4/CHANGELOG
tags/opal2-core-2.4/TODO
tags/opal2-core-2.4/build.xml
tags/opal2-core-2.4/docbook/serversetup.sgml
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From: <sri...@us...> - 2011-02-09 04:15:43
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Revision: 744
http://opaltoolkit.svn.sourceforge.net/opaltoolkit/?rev=744&view=rev
Author: srikrish
Date: 2011-02-09 04:15:38 +0000 (Wed, 09 Feb 2011)
Log Message:
-----------
deleted tag - will re-tag updated version
Removed Paths:
-------------
tags/opal2-core-2.4/
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From: <sri...@us...> - 2011-02-09 04:07:18
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Revision: 743
http://opaltoolkit.svn.sourceforge.net/opaltoolkit/?rev=743&view=rev
Author: srikrish
Date: 2011-02-09 04:07:12 +0000 (Wed, 09 Feb 2011)
Log Message:
-----------
updated clean to not get rid of the docs directory
Modified Paths:
--------------
trunk/opal/opal2-core/build.xml
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From: <sri...@us...> - 2011-02-09 04:06:59
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Revision: 742
http://opaltoolkit.svn.sourceforge.net/opaltoolkit/?rev=742&view=rev
Author: srikrish
Date: 2011-02-09 04:06:53 +0000 (Wed, 09 Feb 2011)
Log Message:
-----------
fixed minor typo
Modified Paths:
--------------
trunk/opal/opal2-core/CHANGELOG
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From: <sri...@us...> - 2011-02-09 03:36:53
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Revision: 741
http://opaltoolkit.svn.sourceforge.net/opaltoolkit/?rev=741&view=rev
Author: srikrish
Date: 2011-02-09 03:36:47 +0000 (Wed, 09 Feb 2011)
Log Message:
-----------
forgot to add the metaservice job manager to the CHANGELOG
Modified Paths:
--------------
trunk/opal/opal2-core/CHANGELOG
trunk/opal/opal2-core/TODO
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From: <nad...@us...> - 2011-02-09 02:54:43
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Revision: 740
http://opaltoolkit.svn.sourceforge.net/opaltoolkit/?rev=740&view=rev
Author: nadyawilliams
Date: 2011-02-09 02:54:37 +0000 (Wed, 09 Feb 2011)
Log Message:
-----------
add details on new release
Modified Paths:
--------------
trunk/opal/new_release_howto.txt
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From: <nad...@us...> - 2011-02-08 19:48:09
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Revision: 739
http://opaltoolkit.svn.sourceforge.net/opaltoolkit/?rev=739&view=rev
Author: nadyawilliams
Date: 2011-02-08 19:48:03 +0000 (Tue, 08 Feb 2011)
Log Message:
-----------
add Nucleic Acid Research paper
Modified Paths:
--------------
trunk/opal/opal-website/src/site/xdoc/publications.xml
Added Paths:
-----------
trunk/opal/opal-website/src/site/resources/publications/W724-31.pdf
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From: <nad...@us...> - 2011-02-08 19:22:32
|
Revision: 738
http://opaltoolkit.svn.sourceforge.net/opaltoolkit/?rev=738&view=rev
Author: nadyawilliams
Date: 2011-02-08 19:22:26 +0000 (Tue, 08 Feb 2011)
Log Message:
-----------
updat contributors list
Modified Paths:
--------------
trunk/opal/opal-website/src/site/xdoc/contributors.xml
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From: <nad...@us...> - 2011-02-08 18:37:25
|
Revision: 737
http://opaltoolkit.svn.sourceforge.net/opaltoolkit/?rev=737&view=rev
Author: nadyawilliams
Date: 2011-02-08 18:37:19 +0000 (Tue, 08 Feb 2011)
Log Message:
-----------
create tag for version 2.4
Added Paths:
-----------
tags/opal2-core-2.4/
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From: <nad...@us...> - 2011-02-07 19:21:58
|
Revision: 736
http://opaltoolkit.svn.sourceforge.net/opaltoolkit/?rev=736&view=rev
Author: nadyawilliams
Date: 2011-02-07 19:21:52 +0000 (Mon, 07 Feb 2011)
Log Message:
-----------
ean cron entry
Modified Paths:
--------------
trunk/opal/opal2-core/etc/cleanup.sh
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