json export new concepts added
Disease concept visual attributed edited
JSON exporter plugin for KnetMaps updated
Removing ondex-view-plugin, MetaDataEditor.
Disabling outdated plugin-rd-ws.
Git test commit
ondex-all nbactions to launch
cyJS plugin new concepts to visualize added
More changes to exclude the 'chemical' module.
Outdated module 'chemical' excluded from build....
Exluding probably wrong version of DefConst
Adding support to multiple ONDEX attritbutes. M...
only uniprot/SGD accessions added to concepts
only gene accessions added to gene concepts
updated
Testing SF permission change.
SGD/Uniprot accessions
Ensembl gene accessions ambiguous
protein accessions ambiguous, gene accessions n...
More clean-up of version from dependencies.
Parameterising ondex module dependency version.
Parameterising ONDEX POM dependencies.
Minor changes to the POM.
Removing all <version> from POMs, when this is ...
Moving to Java 8. Cleaning up POMs.
Another GH/SVN test.
Testing GH-SVN integration.
Testing Git integration.
Preparing github migration.
Test with git-svn.
Testing svn2git.
Very minor improvement on comments.
geneCName duplication issue fixed, eg,GA20ox1A
Adding ignores
Fixing the scripting engine that cannot be run ...
Fixing bug that prevents PVALUE attributes to b...
Adding Javascript plug-in.
Adding JavaScript plug-in.
Minor improvements.
Element start-line added to the schema. Tests a...
tab-parser-2 added to plugins shipped with onde...
Adding tab-parser-2 as plugin to ONDEX installer.
Making GraphEntityPrototype public.
Minor improvement to the module's POM, tab-pars...
Minor improvements to the top POM.
A new tabular file parser plug-in, first commit.
removed sysout println
paralogGroup relations
removed sysout println
changed TAIR (".") ambiguous data sources
Added SGD accession for yeast
edits
transformer_uniprot
orthoxml0_3 new_changes_for_OMA_data
unknown datasources
xref omitted in genericobo parser
Added paralog relations. Split protId
Just a credendials test.
Just a credentials test.
e_fetch WS issue fix
e_fetch WS url changed from http to https to av...
doc_updated
uniprot parser modified to omit extra accession...
cyjs_json parser cleanup
cyjs_json parser cleanup
cyjs_json parser cleanup
jsonIO parser updated in trunk
jsonIO parser updated
cyjs_json parser updated- AddConceptNodeInfo cl...
cyjs_json parser updated- visual concept attrib...
cyjs_json parser updated- visual concept attrib...
updated_160816_tested_for_Wheat_Gene-Protein
merged changes from trunk_sequence
testCommit_160816
small fix to attLocation
Only parse primary accession
Tidy up the code
Parse biotype and add as description
Create pub_in relations to Publication concepts
remote tags
Major change: Not store AA sequence to reduce s...
Set EC tags if parameter is set
Test commit
fastagff_parser_updated_for_Wheat_gff3
gff3_parser_Wheat_tested
changed chromosome from Integer to String in on...
changed chromosome from Integer to String in on...
fastagff_Parser_geneDescription_removed_for_now...
fastagff_Parser_Wheat_ChrName_Location_Aug2016
fastagff_Parser_updated_forWheat_chromosomes_Au...
fastagff_Parser_pom_edited_Aug2016
fastagff_Parser_newCHanges_Aug2016
New orthoXML 0.3 plugin _17-05-2016
orthoXML_2_newCode_and_testFiles
orthoXML_fixes
new branch to fix and extend orthoXML parser (p...
uniprot_parser_disease_fixes
Uniprot parser (local) work in progress, change...
sequence module copied with uniprot parser chan...
jsonIO_Exporter_evidenceTypes_testOXL