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From: <cmu...@us...> - 2020-09-17 06:43:16
|
Revision: 5428
http://sourceforge.net/p/obo/svn/5428
Author: cmungall
Date: 2020-09-17 06:43:14 +0000 (Thu, 17 Sep 2020)
Log Message:
-----------
new-release
Added Paths:
-----------
uberon/releases/2020-09-16/
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <cmu...@us...> - 2020-09-17 06:42:01
|
Revision: 5427
http://sourceforge.net/p/obo/svn/5427
Author: cmungall
Date: 2020-09-17 06:41:09 +0000 (Thu, 17 Sep 2020)
Log Message:
-----------
new
Modified Paths:
--------------
uberon/trunk/basic.obo
uberon/trunk/basic.owl
uberon/trunk/bridge/uberon-bridge-to-aao.obo
uberon/trunk/bridge/uberon-bridge-to-aao.owl
uberon/trunk/bridge/uberon-bridge-to-aeo.obo
uberon/trunk/bridge/uberon-bridge-to-aeo.owl
uberon/trunk/bridge/uberon-bridge-to-bila.obo
uberon/trunk/bridge/uberon-bridge-to-bila.owl
uberon/trunk/bridge/uberon-bridge-to-caro.obo
uberon/trunk/bridge/uberon-bridge-to-caro.owl
uberon/trunk/bridge/uberon-bridge-to-dhba.obo
uberon/trunk/bridge/uberon-bridge-to-dhba.owl
uberon/trunk/bridge/uberon-bridge-to-dmba.obo
uberon/trunk/bridge/uberon-bridge-to-dmba.owl
uberon/trunk/bridge/uberon-bridge-to-efo.obo
uberon/trunk/bridge/uberon-bridge-to-efo.owl
uberon/trunk/bridge/uberon-bridge-to-ehdaa.obo
uberon/trunk/bridge/uberon-bridge-to-ehdaa.owl
uberon/trunk/bridge/uberon-bridge-to-ehdaa2.obo
uberon/trunk/bridge/uberon-bridge-to-ehdaa2.owl
uberon/trunk/bridge/uberon-bridge-to-emapa.obo
uberon/trunk/bridge/uberon-bridge-to-emapa.owl
uberon/trunk/bridge/uberon-bridge-to-fbbt.obo
uberon/trunk/bridge/uberon-bridge-to-fbbt.owl
uberon/trunk/bridge/uberon-bridge-to-fbdv.obo
uberon/trunk/bridge/uberon-bridge-to-fbdv.owl
uberon/trunk/bridge/uberon-bridge-to-fma.obo
uberon/trunk/bridge/uberon-bridge-to-fma.owl
uberon/trunk/bridge/uberon-bridge-to-go.obo
uberon/trunk/bridge/uberon-bridge-to-go.owl
uberon/trunk/bridge/uberon-bridge-to-hao.obo
uberon/trunk/bridge/uberon-bridge-to-hao.owl
uberon/trunk/bridge/uberon-bridge-to-hba.obo
uberon/trunk/bridge/uberon-bridge-to-hba.owl
uberon/trunk/bridge/uberon-bridge-to-ma.obo
uberon/trunk/bridge/uberon-bridge-to-ma.owl
uberon/trunk/bridge/uberon-bridge-to-mba.obo
uberon/trunk/bridge/uberon-bridge-to-mba.owl
uberon/trunk/bridge/uberon-bridge-to-mfo.obo
uberon/trunk/bridge/uberon-bridge-to-mfo.owl
uberon/trunk/bridge/uberon-bridge-to-og.obo
uberon/trunk/bridge/uberon-bridge-to-og.owl
uberon/trunk/bridge/uberon-bridge-to-pba.obo
uberon/trunk/bridge/uberon-bridge-to-pba.owl
uberon/trunk/bridge/uberon-bridge-to-sctid.obo
uberon/trunk/bridge/uberon-bridge-to-sctid.owl
uberon/trunk/bridge/uberon-bridge-to-spd.obo
uberon/trunk/bridge/uberon-bridge-to-spd.owl
uberon/trunk/bridge/uberon-bridge-to-tads.obo
uberon/trunk/bridge/uberon-bridge-to-tads.owl
uberon/trunk/bridge/uberon-bridge-to-tao.obo
uberon/trunk/bridge/uberon-bridge-to-tao.owl
uberon/trunk/bridge/uberon-bridge-to-tgma.obo
uberon/trunk/bridge/uberon-bridge-to-tgma.owl
uberon/trunk/bridge/uberon-bridge-to-vsao.obo
uberon/trunk/bridge/uberon-bridge-to-vsao.owl
uberon/trunk/bridge/uberon-bridge-to-wbbt.obo
uberon/trunk/bridge/uberon-bridge-to-wbbt.owl
uberon/trunk/bridge/uberon-bridge-to-wbls.obo
uberon/trunk/bridge/uberon-bridge-to-wbls.owl
uberon/trunk/bridge/uberon-bridge-to-xao.obo
uberon/trunk/bridge/uberon-bridge-to-xao.owl
uberon/trunk/bridge/uberon-bridge-to-zfa.obo
uberon/trunk/bridge/uberon-bridge-to-zfa.owl
uberon/trunk/bridge/uberon-bridge-to-zfs.obo
uberon/trunk/bridge/uberon-bridge-to-zfs.owl
uberon/trunk/chebi_import.owl
uberon/trunk/cl_import.owl
uberon/trunk/composite-metazoan-basic.obo
uberon/trunk/composite-metazoan.obo
uberon/trunk/composite-metazoan.owl
uberon/trunk/composite-vertebrate.obo
uberon/trunk/composite-vertebrate.owl
uberon/trunk/core.obo
uberon/trunk/core.owl
uberon/trunk/diffs/uberon-diff.md
uberon/trunk/ext.obo
uberon/trunk/ext.owl
uberon/trunk/go_import.owl
uberon/trunk/merged.obo
uberon/trunk/merged.owl
uberon/trunk/ncbitaxon_import.owl
uberon/trunk/pato_import.owl
uberon/trunk/pr_import.owl
uberon/trunk/reports/stages-metazoan-report.tsv
uberon/trunk/ro_import.owl
uberon/trunk/subsets/amniote-basic.obo
uberon/trunk/subsets/amniote-basic.owl
uberon/trunk/subsets/cranial-minimal.obo
uberon/trunk/subsets/cumbo.owl
uberon/trunk/subsets/digestive-minimal.obo
uberon/trunk/subsets/efo-slim.obo
uberon/trunk/subsets/efo-slim.owl
uberon/trunk/subsets/euarchontoglires-basic.obo
uberon/trunk/subsets/euarchontoglires-basic.owl
uberon/trunk/subsets/human-view.obo
uberon/trunk/subsets/human-view.owl
uberon/trunk/subsets/mouse-view.obo
uberon/trunk/subsets/mouse-view.owl
uberon/trunk/subsets/musculoskeletal-minimal.obo
uberon/trunk/subsets/nervous-minimal.obo
uberon/trunk/subsets/reproductive-minimal.obo
uberon/trunk/subsets/sensory-minimal.obo
uberon/trunk/uberon-base.owl
uberon/trunk/uberon.obo
uberon/trunk/uberon.owl
Modified: uberon/trunk/basic.obo
===================================================================
--- uberon/trunk/basic.obo 2020-06-27 18:04:49 UTC (rev 5426)
+++ uberon/trunk/basic.obo 2020-09-17 06:41:09 UTC (rev 5427)
@@ -1,5 +1,5 @@
format-version: 1.2
-data-version: uberon/releases/2020-06-05/basic.owl
+data-version: uberon/releases/2020-06-30/basic.owl
subsetdef: cumbo "CUMBO"
subsetdef: cyclostome_subset "cyclostome structures"
subsetdef: defined_by_cytoarchitecture "brain region defined by cyto-architecture"
@@ -29713,8 +29713,8 @@
def: "An arrangement of nerve fibers, running from the spine where it proceeds through the neck then the axilla and into the arm where it innervates skin and muscle. [WP,modified]." [http://en.wikipedia.org/wiki/Brachial_plexus, UBERON:cjm]
subset: uberon_slim
synonym: "brachial plexus" EXACT [MA:0001180]
+synonym: "plexus brachialis" RELATED [http://en.wikipedia.org/wiki/Brachial_plexus]
synonym: "plexus brachialis" RELATED LATIN [http://en.wikipedia.org/wiki/Brachial_plexus]
-synonym: "plexus brachialis" RELATED [http://en.wikipedia.org/wiki/Brachial_plexus]
xref: Brachial:plexus
xref: EHDAA2:0000180
xref: EHDAA:3782
@@ -50558,8 +50558,8 @@
xref: EMAPA:37921 {source="MA:th"}
xref: FMA:72405
xref: HBA:9086
+xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=472
xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=472 {source="BIRNLEX:1037"}
-xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=472
xref: http://en.wikipedia.org/wiki/Olivary_pretectal_nucleus
xref: http://linkedlifedata.com/resource/umls/id/C0175359
xref: MBA:706
@@ -55933,8 +55933,8 @@
xref: FMA:61909
xref: FMA:71029
xref: HBA:4165
+xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=134
xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=134 {source="BIRNLEX:1657"}
-xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=134
xref: http://en.wikipedia.org/wiki/Transverse_temporal_gyrus
xref: http://linkedlifedata.com/resource/umls/id/C0262198
xref: http://www.snomedbrowser.com/Codes/Details/279192003
@@ -60796,8 +60796,8 @@
synonym: "lateral part of substantia nigra" EXACT [FMA:76844]
synonym: "pars lateralis" EXACT [BIRNLEX:866]
synonym: "pars lateralis substantiae nigrae" EXACT LATIN [FMA:76844, FMA:TA]
+synonym: "substantia nigra lateral part" RELATED [BAMS:SNl]
synonym: "substantia nigra lateral part" RELATED [BAMS:SNL]
-synonym: "substantia nigra lateral part" RELATED [BAMS:SNl]
synonym: "substantia nigra, lateral division" RELATED [BAMS:SNL]
synonym: "substantia nigra, lateral part" EXACT [ABA:SNI]
synonym: "substantia nigra, pars lateralis" RELATED [BAMS:SNL]
@@ -97225,8 +97225,8 @@
synonym: "inferior glossopharyngeal ganglion" EXACT [FMA:53475]
synonym: "inferior glossopharyngeal ganglion of the glossopharyngeal (IX) nerve" EXACT [MP:0001084]
synonym: "ninth cranial nerve inferior ganglion" EXACT [FMA:53475]
+synonym: "petrosal ganglion" RELATED [http://www.merriam-webster.com/medical/petrosal%20ganglion, MP:0001084]
synonym: "petrosal ganglion" RELATED [MP:0001084]
-synonym: "petrosal ganglion" RELATED [http://www.merriam-webster.com/medical/petrosal%20ganglion, MP:0001084]
synonym: "petrous ganglion" RELATED [http://en.wikipedia.org/wiki/File\:Gray791.png, http://en.wikipedia.org/wiki/Inferior_ganglion_of_glossopharyngeal_nerve, http://www.merriam-webster.com/medical/petrous%20ganglion]
xref: EHDAA2:0000711
xref: EMAPA:17153
@@ -106216,8 +106216,8 @@
xref: BAMS:11nf
xref: BIRNLEX:916
xref: FMA:72626
+xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=792
xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=792 {source="BIRNLEX:916"}
-xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=792
xref: http://linkedlifedata.com/resource/umls/id/C0175549
xref: UMLS:C0175549 {source="BIRNLEX:916"}
is_a: UBERON:0000122 ! neuron projection bundle
@@ -110276,7 +110276,7 @@
synonym: "female reproductive system fluid/secretion" EXACT [MA:0002510]
synonym: "female reproductive system secretion" RELATED []
xref: MA:0002510
-is_a: UBERON:0000463 ! organism substance
+is_a: UBERON:0022293 ! reproductive gland secretion
[Term]
id: UBERON:0006538
@@ -166900,8 +166900,8 @@
xref: BIRNLEX:1096
xref: DHBA:10642
xref: FMA:61891
+xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=282 {source="BIRNLEX:1096"}
xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=282
-xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=282 {source="BIRNLEX:1096"}
xref: http://en.wikipedia.org/wiki/Anterior_perforated_substance
xref: http://linkedlifedata.com/resource/umls/id/C0162436
xref: http://www.snomedbrowser.com/Codes/Details/369108006
@@ -169095,7 +169095,6 @@
xref: FMA:55801
is_a: UBERON:0016452 ! upper secondary premolar tooth
is_a: UBERON:0018294 ! premolar 1
-is_a: UBERON:7500058 ! upper fourth secondary premolar tooth
intersection_of: UBERON:0018294 ! premolar 1
intersection_of: part_of UBERON:0001709 ! upper jaw region
intersection_of: part_of UBERON:0007774 ! secondary dentition
@@ -169110,7 +169109,6 @@
xref: FMA:55802
is_a: UBERON:0016452 ! upper secondary premolar tooth
is_a: UBERON:0018640 ! premolar 2
-is_a: UBERON:7500058 ! upper fourth secondary premolar tooth
intersection_of: UBERON:0018640 ! premolar 2
intersection_of: part_of UBERON:0001709 ! upper jaw region
intersection_of: part_of UBERON:0007774 ! secondary dentition
@@ -172245,8 +172243,8 @@
[Term]
id: UBERON:0022665
name: obsolete predominantly gray regional part of lateral hypothalamic region
+synonym: "predominantly gray regional part of lateral hypothalamic region" EXACT HUMAN_PREFERRED [BIRNLEX:1193]
synonym: "predominantly gray regional part of lateral hypothalamic region" EXACT [BIRNLEX:1193]
-synonym: "predominantly gray regional part of lateral hypothalamic region" EXACT HUMAN_PREFERRED [BIRNLEX:1193]
is_obsolete: true
consider: BIRNLEX:1193
@@ -172253,8 +172251,8 @@
[Term]
id: UBERON:0022681
name: obsolete regional part of cerebral peduncle
+synonym: "regional part of cerebral peduncle" EXACT [BIRNLEX:1209]
synonym: "regional part of cerebral peduncle" EXACT HUMAN_PREFERRED [BIRNLEX:1209]
-synonym: "regional part of cerebral peduncle" EXACT [BIRNLEX:1209]
is_obsolete: true
consider: BIRNLEX:1209
@@ -172394,8 +172392,8 @@
[Term]
id: UBERON:0022877
name: obsolete regional part of oculomotor nuclear complex
+synonym: "regional part of oculomotor nuclear complex" EXACT [BIRNLEX:1405]
synonym: "regional part of oculomotor nuclear complex" EXACT HUMAN_PREFERRED [BIRNLEX:1405]
-synonym: "regional part of oculomotor nuclear complex" EXACT [BIRNLEX:1405]
is_obsolete: true
consider: BIRNLEX:1405
@@ -172784,8 +172782,8 @@
[Term]
id: UBERON:0023587
name: obsolete predominantly gray regional part of inferior colliculus
+synonym: "predominantly gray regional part of inferior colliculus" EXACT [BIRNLEX:718]
synonym: "predominantly gray regional part of inferior colliculus" EXACT HUMAN_PREFERRED [BIRNLEX:718]
-synonym: "predominantly gray regional part of inferior colliculus" EXACT [BIRNLEX:718]
is_obsolete: true
consider: BIRNLEX:718
@@ -173421,8 +173419,8 @@
id: UBERON:0024110
name: basis pontis
def: "The basis pontis is the anterior portion of the pons." [http://en.wikipedia.org/wiki/Basilar_part_of_pons]
+synonym: "basis pontis" EXACT [NLXANAT:20090704]
synonym: "basis pontis" EXACT HUMAN_PREFERRED [NLXANAT:20090704]
-synonym: "basis pontis" EXACT [NLXANAT:20090704]
xref: http://en.wikipedia.org/wiki/Basilar_part_of_pons
xref: NLXANAT:20090704
is_a: UBERON:0002616 ! regional part of brain
@@ -173482,8 +173480,8 @@
[Term]
id: UBERON:0024183
name: inferior transverse frontopolar gyrus
+synonym: "inferior transverse frontopolar gyrus" EXACT HUMAN_PREFERRED [BIRNLEX:1064]
synonym: "inferior transverse frontopolar gyrus" EXACT [BIRNLEX:1064]
-synonym: "inferior transverse frontopolar gyrus" EXACT HUMAN_PREFERRED [BIRNLEX:1064]
xref: BIRNLEX:1064
xref: FMA:274414
xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=842
@@ -173549,8 +173547,8 @@
[Term]
id: UBERON:0024285
name: obsolete regional part of basal part of pons
+synonym: "regional part of basal part of pons" EXACT [BIRNLEX:1168]
synonym: "regional part of basal part of pons" EXACT HUMAN_PREFERRED [BIRNLEX:1168]
-synonym: "regional part of basal part of pons" EXACT [BIRNLEX:1168]
is_obsolete: true
consider: BIRNLEX:1168
@@ -173767,8 +173765,8 @@
[Term]
id: UBERON:0024749
name: obsolete predominantly gray regional part of temporal lobe
+synonym: "predominantly gray regional part of temporal lobe" EXACT [BIRNLEX:1633]
synonym: "predominantly gray regional part of temporal lobe" EXACT HUMAN_PREFERRED [BIRNLEX:1633]
-synonym: "predominantly gray regional part of temporal lobe" EXACT [BIRNLEX:1633]
is_obsolete: true
consider: BIRNLEX:1633
consider: UBERON:0016538
@@ -174004,8 +174002,8 @@
id: UBERON:0025182
name: obsolete regional part of gustatory epithelium
alt_id: UBERON:0025487
+synonym: "regional part of gustatory epithelium" EXACT HUMAN_PREFERRED [BIRNLEX:4100]
synonym: "regional part of gustatory epithelium" EXACT [BIRNLEX:4100]
-synonym: "regional part of gustatory epithelium" EXACT HUMAN_PREFERRED [BIRNLEX:4100]
is_obsolete: true
consider: BIRNLEX:4100
consider: http://uri.neuinfo.org/nif/nifstd/nifext_13
@@ -174013,8 +174011,8 @@
[Term]
id: UBERON:0025236
name: obsolete regional part of cervical spinal cord white matter
+synonym: "regional part of cervical spinal cord white matter" EXACT [BIRNLEX:723]
synonym: "regional part of cervical spinal cord white matter" EXACT HUMAN_PREFERRED [BIRNLEX:723]
-synonym: "regional part of cervical spinal cord white matter" EXACT [BIRNLEX:723]
is_obsolete: true
consider: BIRNLEX:723
@@ -174663,8 +174661,8 @@
[Term]
id: UBERON:0026536
name: obsolete regional part of cochlea
+synonym: "regional part of cochlea" EXACT HUMAN_PREFERRED [BIRNLEX:1794]
synonym: "regional part of cochlea" EXACT [BIRNLEX:1794]
-synonym: "regional part of cochlea" EXACT HUMAN_PREFERRED [BIRNLEX:1794]
is_obsolete: true
consider: BIRNLEX:1794
consider: UMLS:C0931696
@@ -174685,8 +174683,8 @@
id: UBERON:0026546
name: principal neuronal circuit
def: "A neuronal circuit bearing a principal projection neuron whose axon extends beyond the region where its soma is located to synapse on the dendrites of cells in other regions of the nervous system (BB)." [BIRNLEX:2514]
+synonym: "principal neuronal circuit" EXACT HUMAN_PREFERRED [BIRNLEX:2514]
synonym: "principal neuronal circuit" EXACT [BIRNLEX:2514]
-synonym: "principal neuronal circuit" EXACT HUMAN_PREFERRED [BIRNLEX:2514]
xref: BIRNLEX:2514
is_a: UBERON:0024914 {source="NIFSTD"} ! circuit part of central nervous system
@@ -174960,8 +174958,8 @@
[Term]
id: UBERON:0026982
name: obsolete predominantly gray midline regional part of thalamus
+synonym: "predominantly gray midline regional part of thalamus" EXACT [BIRNLEX:849]
synonym: "predominantly gray midline regional part of thalamus" EXACT HUMAN_PREFERRED [BIRNLEX:849]
-synonym: "predominantly gray midline regional part of thalamus" EXACT [BIRNLEX:849]
is_obsolete: true
consider: BIRNLEX:849
@@ -175176,8 +175174,8 @@
[Term]
id: UBERON:0027331
name: flocculonodular lobe, hemisphere portion
+synonym: "hemispheric part of the flocculonodular lobe of the cerebellum" EXACT HUMAN_PREFERRED [NLXANAT:20081260]
synonym: "hemispheric part of the flocculonodular lobe of the cerebellum" EXACT [NLXANAT:20081260]
-synonym: "hemispheric part of the flocculonodular lobe of the cerebellum" EXACT HUMAN_PREFERRED [NLXANAT:20081260]
xref: NLXANAT:20081260
is_a: UBERON:0002749 ! regional part of cerebellar cortex
intersection_of: UBERON:0002616 ! regional part of brain
@@ -175242,8 +175240,8 @@
[Term]
id: UBERON:0027453
name: obsolete predominantly gray regional part of pontine reticular formation
+synonym: "predominantly gray regional part of pontine reticular formation" EXACT HUMAN_PREFERRED [BIRNLEX:1071]
synonym: "predominantly gray regional part of pontine reticular formation" EXACT [BIRNLEX:1071]
-synonym: "predominantly gray regional part of pontine reticular formation" EXACT HUMAN_PREFERRED [BIRNLEX:1071]
is_obsolete: true
consider: BIRNLEX:1071
@@ -175377,8 +175375,8 @@
[Term]
id: UBERON:0027758
name: obsolete regional part of paraventricular nucleus of hypothalamus magnocellular division
+synonym: "regional part of paraventricular nucleus of hypothalamus magnocellular division" EXACT HUMAN_PREFERRED [BIRNLEX:1380]
synonym: "regional part of paraventricular nucleus of hypothalamus magnocellular division" EXACT [BIRNLEX:1380]
-synonym: "regional part of paraventricular nucleus of hypothalamus magnocellular division" EXACT HUMAN_PREFERRED [BIRNLEX:1380]
is_obsolete: true
consider: BIRNLEX:1380
@@ -175528,8 +175526,8 @@
[Term]
id: UBERON:0028337
name: obsolete regional part of entorhinal cortex
+synonym: "regional part of entorhinal cortex" EXACT [BIRNLEX:2704]
synonym: "regional part of entorhinal cortex" EXACT HUMAN_PREFERRED [BIRNLEX:2704]
-synonym: "regional part of entorhinal cortex" EXACT [BIRNLEX:2704]
is_obsolete: true
consider: BIRNLEX:2704
@@ -175854,8 +175852,8 @@
[Term]
id: UBERON:0028615
name: obsolete predominantly gray part of Intralaminar nuclear group
+synonym: "predominantly gray part of intralaminar nuclear group" EXACT HUMAN_PREFERRED [BIRNLEX:852]
synonym: "predominantly gray part of intralaminar nuclear group" EXACT [BIRNLEX:852]
-synonym: "predominantly gray part of intralaminar nuclear group" EXACT HUMAN_PREFERRED [BIRNLEX:852]
is_obsolete: true
consider: BIRNLEX:852
@@ -219381,12 +219379,7 @@
def: "The premolar tooth of the upper jaw that is phylogenetically number 4." [https://orcid.org/0000-0003-2699-3066]
synonym: "P4" RELATED []
synonym: "upper fourth permanent premolar tooth" EXACT []
-is_a: UBERON:0016944 ! upper premolar tooth
-is_a: UBERON:0017270 ! secondary premolar tooth
-is_a: UBERON:0018613 ! secondary upper tooth
-intersection_of: UBERON:0007120 ! premolar tooth
-intersection_of: part_of UBERON:0001709 ! upper jaw region
-intersection_of: part_of UBERON:0007774 ! secondary dentition
+is_a: UBERON:0016452 ! upper secondary premolar tooth
created_by: https://orcid.org/0000-0003-2699-3066
[Term]
@@ -219396,7 +219389,6 @@
synonym: "P3" RELATED []
synonym: "upper third permanent premolar tooth" EXACT []
is_a: UBERON:0016452 ! upper secondary premolar tooth
-is_a: UBERON:7500058 ! upper fourth secondary premolar tooth
created_by: https://orcid.org/0000-0003-2699-3066
[Term]
@@ -219416,6 +219408,17 @@
created_by: http://orcid.org/0000-0001-5208-3432
[Term]
+id: UBERON:8000005
+name: Henle's fiber layer
+def: "This layer contains bundles of unmyelinated cone and rod photoreceptor axons terminating in the pedicles and spherules that synapse in the retinal outer plexiform layer (OPL)." [http://www.ncbi.nlm.nih.gov/pubmed/21071737]
+synonym: "Henle fiber layer" EXACT []
+synonym: "HFL" EXACT []
+synonym: "nerve fiber layer of Henle" EXACT []
+is_a: UBERON:0022303 ! nervous system cell part layer
+relationship: part_of UBERON:0000966 ! retina
+created_by: http://orcid.org/0000-0001-5208-3432
+
+[Term]
id: UBERON:8000006
name: left side of back
def: "Left part of the organism dorsal to a horizontal plane and bounded on one side by the same transverse plane." [https://microbiomedb.org/]
Modified: uberon/trunk/basic.owl
===================================================================
--- uberon/trunk/basic.owl 2020-06-27 18:04:49 UTC (rev 5426)
+++ uberon/trunk/basic.owl 2020-09-17 06:41:09 UTC (rev 5427)
@@ -16,7 +16,7 @@
xmlns:terms="http://purl.org/dc/terms/"
xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/basic.owl">
- <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/releases/2020-06-05/basic.owl"/>
+ <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/releases/2020-06-30/basic.owl"/>
<dc:contributor rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Alan Ruttenberg</dc:contributor>
<dc:contributor rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Alexander Diehl</dc:contributor>
<dc:contributor rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Ann Maglia</dc:contributor>
@@ -412503,7 +412503,7 @@
<!-- http://purl.obolibrary.org/obo/UBERON_0006537 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0006537">
- <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000463"/>
+ <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0022293"/>
<obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A portion of organism substance that is secreted by a female reproductive gland.</obo:IAO_0000115>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">MA:0002510</oboInOwl:hasDbXref>
<oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">female reproductive system fluid/secretion</oboInOwl:hasExactSynonym>
@@ -634627,7 +634627,6 @@
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0016452"/>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0018294"/>
- <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_7500058"/>
<obo:IAO_0000116 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">TODO - tooth numbering nomeculature to be aligned across species</obo:IAO_0000116>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">FMA:55801</oboInOwl:hasDbXref>
<oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">maxillary first secondary premolar tooth</oboInOwl:hasExactSynonym>
@@ -634685,7 +634684,6 @@
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0016452"/>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0018640"/>
- <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_7500058"/>
<obo:IAO_0000116 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">TODO - tooth numbering nomeculature to be aligned across species</obo:IAO_0000116>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">FMA:55802</oboInOwl:hasDbXref>
<oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">maxillary second secondary premolar tooth</oboInOwl:hasExactSynonym>
@@ -780819,24 +780817,7 @@
<!-- http://purl.obolibrary.org/obo/UBERON_7500058 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_7500058">
- <owl:equivalentClass>
- <owl:Class>
- <owl:intersectionOf rdf:parseType="Collection">
- <rdf:Description rdf:about="http://purl.obolibrary.org/obo/UBERON_0007120"/>
- <owl:Restriction>
- <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
- <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_0001709"/>
- </owl:Restriction>
- <owl:Restriction>
- <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
- <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_0007774"/>
- </owl:Restriction>
- </owl:intersectionOf>
- </owl:Class>
- </owl:equivalentClass>
- <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0016944"/>
- <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0017270"/>
- <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0018613"/>
+ <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0016452"/>
<obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">The premolar tooth of the upper jaw that is phylogenetically number 4.</obo:IAO_0000115>
<oboInOwl:created_by rdf:datatype="http://www.w3.org/2001/XMLSchema#string">https://orcid.org/0000-0003-2699-3066</oboInOwl:created_by>
<oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">upper fourth permanent premolar tooth</oboInOwl:hasExactSynonym>
@@ -780858,7 +780839,6 @@
<owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_7500059">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0016452"/>
- <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_7500058"/>
<obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">The premolar tooth of the upper jaw that is phylogenetically number 3.</obo:IAO_0000115>
<oboInOwl:created_by rdf:datatype="http://www.w3.org/2001/XMLSchema#string">https://orcid.org/0000-0003-2699-3066</oboInOwl:created_by>
<oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">upper third permanent premolar tooth</oboInOwl:hasExactSynonym>
@@ -780921,6 +780901,34 @@
+ <!-- http://purl.obolibrary.org/obo/UBERON_8000005 -->
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_8000005">
+ <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0022303"/>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
+ <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000966"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">This layer contains bundles of unmyelinated cone and rod photoreceptor axons terminating in the pedicles and spherules that synapse in the retinal outer plexiform layer (OPL).</obo:IAO_0000115>
+ <oboInOwl:created_by rdf:datatype="http://www.w3.org/2001/XMLSchema#string">http://orcid.org/0000-0001-5208-3432</oboInOwl:created_by>
+ <oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">HFL</oboInOwl:hasExactSynonym>
+ <oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Henle fiber layer</oboInOwl:hasExactSynonym>
+ <oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">nerve fiber layer of Henle</oboInOwl:hasExactSynonym>
+ <oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">uberon</oboInOwl:hasOBONamespace>
+ <oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">UBERON:8000005</oboInOwl:id>
+ <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Henle's fiber layer</rdfs:label>
+ </owl:Class>
+ <owl:Axiom>
+ <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/UBERON_8000005"/>
+ <owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
+ <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">This layer contains bundles of unmyelinated cone and rod photoreceptor axons terminating in the pedicles and spherules that synapse in the retinal outer plexiform layer (OPL).</owl:annotatedTarget>
+ <oboInOwl:hasDbXref rdf:resource="http://www.ncbi.nlm.nih.gov/pubmed/21071737"/>
+ </owl:Axiom>
+
+
+
<!-- http://purl.obolibrary.org/obo/UBERON_8000006 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_8000006">
@@ -781216,20 +781224,20 @@
-->
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/BFO_0000051">
+ <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">BFO:0000051</oboInOwl:hasDbXref>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">has part</rdfs:label>
- <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">BFO:0000051</oboInOwl:hasDbXref>
<oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">has_part</oboInOwl:id>
<oboInOwl:shorthand rdf:datatype="http://www.w3.org/2001/XMLSchema#string">has_part</oboInOwl:shorthand>
<oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">uberon</oboInOwl:hasOBONamespace>
</rdf:Description>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/BFO_0000062">
+ <oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">preceded_by</oboInOwl:id>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">preceded_by</rdfs:label>
- <oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">preceded_by</oboInOwl:id>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">BFO:0000062</oboInOwl:hasDbXref>
<oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">uberon</oboInOwl:hasOBONamespace>
<oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">takes place after</oboInOwl:hasExactSynonym>
+ <oboInOwl:shorthand rdf:datatype="http://www.w3.org/2001/XMLSchema#string">preceded_by</oboInOwl:shorthand>
<obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">X preceded_by Y iff: end(Y) before_or_simultaneous_with start(X)</obo:IAO_0000115>
- <oboInOwl:shorthand rdf:datatype="http://www.w3.org/2001/XMLSchema#string">preceded_by</oboInOwl:shorthand>
<oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">is preceded by</oboInOwl:hasExactSynonym>
</rdf:Description>
<owl:Axiom>
@@ -781253,8 +781261,8 @@
</rdf:Description>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/BFO_0000067">
<oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">contains_process</oboInOwl:id>
+ <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">contains process</rdfs:label>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">BFO:0000067</oboInOwl:hasDbXref>
- <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">contains process</rdfs:label>
<oboInOwl:shorthand rdf:datatype="http://www.w3.org/2001/XMLSchema#string">contains_process</oboInOwl:shorthand>
<oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">uberon</oboInOwl:hasOBONamespace>
</rdf:Description>
@@ -781270,11 +781278,11 @@
</rdf:Description>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/BSPO_0000096">
<obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">x anterior_to y iff x is further along the antero-posterior axis than y, towards the head. An antero-posterior axis is an axis that bisects an organism from head end to opposite end of body or tail: bearer</obo:IAO_0000115>
- <oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">anterior_to</oboInOwl:id>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">anterior_to</rdfs:label>
<oboInOwl:creation_date rdf:datatype="http://www.w3.org/2001/XMLSchema#string">2009-07-31T02:15:46Z</oboInOwl:creation_date>
+ <oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">anterior_to</oboInOwl:id>
+ <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">BSPO:0000096</oboInOwl:hasDbXref>
<oboInOwl:created_by rdf:datatype="http://www.w3.org/2001/XMLSchema#string">cjm</oboInOwl:created_by>
- <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">BSPO:0000096</oboInOwl:hasDbXref>
<oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">uberon</oboInOwl:hasOBONamespace>
<oboInOwl:shorthand rdf:datatype="http://www.w3.org/2001/XMLSchema#string">anterior_to</oboInOwl:shorthand>
</rdf:Description>
@@ -781285,12 +781293,12 @@
<oboInOwl:hasDbXref rdf:resource="http://orcid.org/0000-0002-6601-2165"/>
</owl:Axiom>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/BSPO_0000097">
+ <oboInOwl:shorthand rdf:datatype="http://www.w3.org/2001/XMLSchema#string">distal_to</oboInOwl:shorthand>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">BSPO:0000097</oboInOwl:hasDbXref>
- <oboInOwl:shorthand rdf:datatype="http://www.w3.org/2001/XMLSchema#string">distal_to</oboInOwl:shorthand>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">distal_to</rdfs:label>
<oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">distal_to</oboInOwl:id>
+ <oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">uberon</oboInOwl:hasOBONamespace>
<obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">x distal_to y iff x is further along the proximo-distal axis than y, towards the appendage tip. A proximo-distal axis extends from tip of an appendage (distal) to where it joins the body (proximal).</obo:IAO_0000115>
- <oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">uberon</oboInOwl:hasOBONamespace>
</rdf:Description>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BSPO_0000097"/>
@@ -781302,8 +781310,8 @@
<oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">uberon</oboInOwl:hasOBONamespace>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">dorsal_to</rdfs:label>
<oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">dorsal_to</oboInOwl:id>
+ <obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">x dorsal_to y iff x is further along the dorso-ventral axis than y, towards the back. A dorso-ventral axis is an axis that bisects an organism from back (e.g. spinal column) to front (e.g. belly).</obo:IAO_0000115>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">BSPO:0000098</oboInOwl:hasDbXref>
- <obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">x dorsal_to y iff x is further along the dorso-ventral axis than y, towards the back. A dorso-ventral axis is an axis that bisects an organism from back (e.g. spinal column) to front (e.g. belly).</obo:IAO_0000115>
<oboInOwl:shorthand rdf:datatype="http://www.w3.org/2001/XMLSchema#string">dorsal_to</oboInOwl:shorthand>
</rdf:Description>
<owl:Axiom>
@@ -781329,11 +781337,11 @@
</owl:Axiom>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/BSPO_0000100">
<obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">x proximal_to y iff x is closer to the point of attachment with the body than y.</obo:IAO_0000115>
+ <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">proximal_to</rdfs:label>
<oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">proximal_to</oboInOwl:id>
- <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">proximal_to</rdfs:label>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">BSPO:0000100</oboInOwl:hasDbXref>
+ <oboInOwl:shorthand rdf:datatype="http://www.w3.org/2001/XMLSchema#string">proximal_to</oboInOwl:shorthand>
<oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">uberon</oboInOwl:hasOBONamespace>
- <oboInOwl:shorthand rdf:datatype="http://www.w3.org/2001/XMLSchema#string">proximal_to</oboInOwl:shorthand>
</rdf:Description>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BSPO_0000100"/>
@@ -781342,8 +781350,8 @@
<oboInOwl:hasDbXref rdf:resource="http://orcid.org/0000-0002-6601-2165"/>
</owl:Axiom>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/BSPO_0000102">
+ <oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">ventral_to</oboInOwl:id>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">ventral_to</rdfs:label>
- <oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">ventral_to</oboInOwl:id>
<oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">uberon</oboInOwl:hasOBONamespace>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">BSPO:0000102</oboInOwl:hasDbXref>
<oboInOwl:shorthand rdf:datatype="http://www.w3.org/2001/XMLSchema#string">ventral_to</oboInOwl:shorthand>
@@ -781358,8 +781366,8 @@
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/BSPO_0000107">
<oboInOwl:shorthand rdf:datatype="http://www.w3.org/2001/XMLSchema#string">deep_to</oboInOwl:shorthand>
<oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">uberon</oboInOwl:hasOBONamespace>
+ <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">deep_to</rdfs:label>
<oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">deep_to</oboInOwl:id>
- <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">deep_to</rdfs:label>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">BSPO:0000107</oboInOwl:hasDbXref>
<obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Further away from the surface of the organism. Thus, the muscular layer is deep to the skin, but superficial to the intestines.</obo:IAO_0000115>
</rdf:Description>
@@ -781370,11 +781378,11 @@
<oboInOwl:hasDbXref rdf:resource="http://orcid.org/0000-0002-6601-2165"/>
</owl:Axiom>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/BSPO_0000108">
+ <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">superficial_to</rdfs:label>
+ <oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">superficial_to</oboInOwl:id>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">BSPO:0000108</oboInOwl:hasDbXref>
- <oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">superficial_to</oboInOwl:id>
- <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">superficial_to</rdfs:label>
+ <obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Near the outer surface of the organism. Thus, skin is superficial to the muscle layer.</obo:IAO_0000115>
<oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">uberon</oboInOwl:hasOBONamespace>
- <obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Near the outer surface of the organism. Thus, skin is superficial to the muscle layer.</obo:IAO_0000115>
<oboInOwl:shorthand rdf:datatype="http://www.w3.org/2001/XMLSchema#string">superficial_to</oboInOwl:shorthand>
</rdf:Description>
<owl:Axiom>
@@ -781385,9 +781393,9 @@
</owl:Axiom>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/BSPO_0000120">
<oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">uberon</oboInOwl:hasOBONamespace>
- <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">BSPO:0000120</oboInOwl:hasDbXref>
<oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">in_left_side_of</oboInOwl:id>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">in_left_side_of</rdfs:label>
+ <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">BSPO:0000120</oboInOwl:hasDbXref>
<rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern</rdfs:seeAlso>
<obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">X in_left_side_of Y <=> if Y is subdivided into left and right portions, X is part_of the left portion.</obo:IAO_0000115>
<oboInOwl:shorthand rdf:datatype="http://www.w3.org/2001/XMLSchema#string">in_left_side_of</oboInOwl:shorthand>
@@ -781400,11 +781408,11 @@
</owl:Axiom>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/BSPO_0000121">
<oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">uberon</oboInOwl:hasOBONamespace>
+ <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">in_right_side_of</rdfs:label>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">BSPO:0000121</oboInOwl:hasDbXref>
<oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">in_right_side_of</oboInOwl:id>
- <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">in_right_side_of</rdfs:label>
+ <rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern</rdfs:seeAlso>
<obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">X in_right_side_of Y <=> if Y is subdivided into left and right portions, X is part_of the right portion.</obo:IAO_0000115>
- <rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern</rdfs:seeAlso>
<oboInOwl:shorthand rdf:datatype="http://www.w3.org/2001/XMLSchema#string">in_right_side_of</oboInOwl:shorthand>
</rdf:Description>
<owl:Axiom>
@@ -781415,8 +781423,8 @@
</owl:Axiom>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/BSPO_0000122">
<oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">uberon</oboInOwl:hasOBONamespace>
+ <oboInOwl:shorthand rdf:datatype="http://www.w3.org/2001/XMLSchema#string">in_posterior_side_of</oboInOwl:shorthand>
<obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">X posterior_side_of Y <=> if Y is subdivided into two anterior and posterior portions, X is part_of the posterior portion.</obo:IAO_0000115>
- <oboInOwl:shorthand rdf:datatype="http://www.w3.org/2001/XMLSchema#string">in_posterior_side_of</oboInOwl:shorthand>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">BSPO:0000122</oboInOwl:hasDbXref>
<oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">in_posterior_side_of</oboInOwl:id>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">in_posterior_side_of</rdfs:label>
@@ -781444,8 +781452,8 @@
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/BSPO_0000124">
<oboInOwl:shorthand rdf:datatype="http://www.w3.org/2001/XMLSchema#string">in_proximal_side_of</oboInOwl:shorthand>
<oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">uberon</oboInOwl:hasOBONamespace>
+ <oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">in_proximal_side_of</oboInOwl:id>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">in_proximal_side_of</rdfs:label>
- <oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">in_proximal_side_of</oboInOwl:id>
<obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">X proximal_side_of Y <=> if Y is subdivided into distal and proximal portions, X is part_of the proximal portion.</obo:IAO_0000115>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">BSPO:0000124</oboInOwl:hasDbXref>
</rdf:Description>
@@ -781470,10 +781478,10 @@
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">BSPO:PATO_mtg_2009</oboInOwl:hasDbXref>
</owl:Axiom>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/BSPO_0000126">
+ <oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">uberon</oboInOwl:hasOBONamespace>
<obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">X in_lateral_side_of Y <=> if X is in_left_side_of Y or X is in_right_side_of Y. X is often, but not always a paired structure</obo:IAO_0000115>
- <oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">uberon</oboInOwl:hasOBONamespace>
+ <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">in_lateral_side_of</rdfs:label>
<oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">in_lateral_side_of</oboInOwl:id>
- <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">in_lateral_side_of</rdfs:label>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">BSPO:0000126</oboInOwl:hasDbXref>
<oboInOwl:shorthand rdf:datatype="http://www.w3.org/2001/XMLSchema#string">in_lateral_side_of</oboInOwl:shorthand>
<rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern</rdfs:seeAlso>
@@ -781486,8 +781494,8 @@
</owl:Axiom>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/BSPO_0001100">
<oboInOwl:shorthand rdf:datatype="http://www.w3.org/2001/XMLSchema#string">in_superficial_part_of</oboInOwl:shorthand>
+ <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">in_superficial_part_of</rdfs:label>
<oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">in_superficial_part_of</oboInOwl:id>
- <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">in_superficial_part_of</rdfs:label>
<oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">uberon</oboInOwl:hasOBONamespace>
<obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">X superficial_part_of Y <=> if Y is subdivided into two superficial and deep portions, X is part_of the superficial portion.</obo:IAO_0000115>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">BSPO:0001100</oboInOwl:hasDbXref>
@@ -781500,8 +781508,8 @@
</owl:Axiom>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/BSPO_0001101">
<oboInOwl:shorthand rdf:datatype="http://www.w3.org/2001/XMLSchema#string">in_deep_part_of</oboInOwl:shorthand>
+ <obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">X superficial_part_of Y <=> if Y is subdivided into two superficial and deep portions, X is part_of the deep portion.</obo:IAO_0000115>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">BSPO:0001101</oboInOwl:hasDbXref>
- <obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">X superficial_part_of Y <=> if Y is subdivided into two superficial and deep portions, X is part_of the deep portion.</obo:IAO_0000115>
<oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">in_deep_part_of</oboInOwl:id>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">in_deep_part_of</rdfs:label>
<oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">uberon</oboInOwl:hasOBONamespace>
@@ -781516,8 +781524,8 @@
<oboInOwl:shorthand rdf:datatype="http://www.w3.org/2001/XMLSchema#string">proximalmost_part_of</oboInOwl:shorthand>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">BSPO:0001106</oboInOwl:hasDbXref>
<oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">uberon</oboInOwl:hasOBONamespace>
+ <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">proximalmost_part_of</rdfs:label>
<oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">proximalmost_part_of</oboInOwl:id>
- <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">proximalmost_part_of</rdfs:label>
<obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">X proximalmost_part_of Y <=> X is part_of Y and X is adjacent_to the proximal boundary of Y</obo:IAO_0000115>
</rdf:Description>
<owl:Axiom>
@@ -781531,8 +781539,8 @@
<oboInOwl:shorthand rdf:datatype="http://www.w3.org/2001/XMLSchema#string">immediately_deep_to</oboInOwl:shorthand>
<obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">This relation holds when both the deep_to and ajdacent_to relationship similarly hold.</obo:IAO_0000115>
<oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">uberon</oboInOwl:hasOBONamespace>
+ <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">immediately_deep_to</rdfs:label>
<oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">immediately_deep_to</oboInOwl:id>
- <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">immediately_deep_to</rdfs:label>
</rdf:Description>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BSPO_0001107"/>
@@ -781542,11 +781550,11 @@
</owl:Axiom>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/BSPO_0001108">
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">BSPO:0001108</oboInOwl:hasDbXref>
+ <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">distalmost_part_of</rdfs:label>
<oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">distalmost_part_of</oboInOwl:id>
- <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">distalmost_part_of</rdfs:label>
<obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">X distalmost_part_of Y <=> X is part_of Y and X is adjacent_to the distal boundary of Y</obo:IAO_0000115>
+ <oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">uberon</oboInOwl:hasOBONamespace>
<oboInOwl:shorthand rdf:datatype="http://www.w3.org/2001/XMLSchema#string">distalmost_part_of</oboInOwl:shorthand>
- <oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">uberon</oboInOwl:hasOBONamespace>
</rdf:Description>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BSPO_0001108"/>
@@ -781563,8 +781571,8 @@
</rdf:Description>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/BSPO_0001114">
<oboInOwl:shorthand rdf:datatype="http://www.w3.org/2001/XMLSchema#string">postaxial_to</oboInOwl:shorthand>
+ <oboInOwl:hasRelatedSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">posterior_to (developmentally)</oboInOwl:hasRelatedSynonym>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">BSPO:0001114</oboInOwl:hasDbXref>
- <oboInOwl:hasRelatedSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">posterior_to (developmentally)</oboInOwl:hasRelatedSynonym>
<oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">uberon</oboInOwl:hasOBONamespace>
<oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">postaxial_to</oboInOwl:id>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">postaxial_to</rdfs:label>
@@ -781590,8 +781598,8 @@
<oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">uberon</oboInOwl:hasOBONamespace>
</rdf:Description>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/BSPO_0005001">
+ <obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">X intersects_median_plane of iff X crosses the midine plane of Y.</obo:IAO_0000115>
<oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">intersects_midsagittal_plane_of</oboInOwl:id>
- <obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">X intersects_median_plane of iff X crosses the midine plane of Y.</obo:IAO_0000115>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">intersects_midsagittal_plane_of</rdfs:label>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">BSPO:0005001</oboInOwl:hasDbXref>
<oboInOwl:shorthand rdf:datatype="http://www.w3.org/2001/XMLSchema#string">intersects_midsagittal_plane_of</oboInOwl:shorthand>
@@ -781598,8 +781606,8 @@
<oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">uberon</oboInOwl:hasOBONamespace>
</rdf:Description>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/BSPO_0015009">
+ <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">immediately_anterior_to</rdfs:label>
<oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">immediately_anterior_to</oboInOwl:id>
- <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">immediately_anterior_to</rdfs:label>
<oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">uberon</oboInOwl:hasOBONamespace>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">BSPO:0015009</oboInOwl:hasDbXref>
<oboInOwl:shorthand rdf:datatype="http://www.w3.org/2001/XMLSchema#string">immediately_anterior_to</oboInOwl:shorthand>
@@ -781608,13 +781616,13 @@
<oboInOwl:shorthand rdf:datatype="http://www.w3.org/2001/XMLSchema#string">immediately_posterior_to</oboInOwl:shorthand>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">BSPO:0015012</oboInOwl:hasDbXref>
<oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">immediately_posterior_to</oboInOwl:id>
+ <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">immediately_posterior_to</rdfs:label>
<oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">uberon</oboInOwl:hasOBONamespace>
- <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">immediately_posterior_to</rdfs:label>
</rdf:Description>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/BSPO_0015014">
<oboInOwl:shorthand rdf:datatype="http://www.w3.org/2001/XMLSchema#string">immediately_superficial_to</oboInOwl:shorthand>
+ <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">BSPO:0015014</oboInOwl:hasDbXref>
<oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">uberon</oboInOwl:hasOBONamespace>
- <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">BSPO:0015014</oboInOwl:hasDbXref>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">immediately_superficial_to</rdfs:label>
<oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">immediately_superficial_to</oboInOwl:id>
</rdf:Description>
@@ -781633,8 +781641,8 @@
<oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">uberon</oboInOwl:hasOBONamespace>
</rdf:Description>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/BSPO_0015201">
+ <oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">oral_to</oboInOwl:id>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">oral_to</rdfs:label>
- <oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">oral_to</oboInOwl:id>
<oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">uberon</oboInOwl:hasOBONamespace>
<obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">nearer to the oral opening of the organism, on the oral-aboral axis.</obo:IAO_0000115>
<oboInOwl:shorthand rdf:datatype="http://www.w3.org/2001/XMLSchema#string">oral_to</oboInOwl:shorthand>
@@ -781647,12 +781655,12 @@
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">BSPO:cjm</oboInOwl:hasDbXref>
</owl:Axiom>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/BSPO_0015202">
+ <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">aboral_to</rdfs:label>
<oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">aboral_to</oboInOwl:id>
- <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">aboral_to</rdfs:label>
<oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">uberon</oboInOwl:hasOBONamespace>
+ <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">BSPO:0015202</oboInOwl:hasDbXref>
+ <obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">nearer to the aboral opening of the organism, on the oral-aboral axis.</obo:IAO_0000115>
<oboInOwl:shorthand rdf:datatype="http://www.w3.org/2001/XMLSchema#string">aboral_to</oboInOwl:shorthand>
- <obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">nearer to the aboral opening of the organism, on the oral-aboral axis.</obo:IAO_0000115>
- <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">BSPO:0015202</oboInOwl:hasDbXref>
</rdf:Description>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BSPO_0015202"/>
@@ -781661,15 +781669,15 @@
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">BSPO:cjm</oboInOwl:hasDbXref>
</owl:Axiom>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/BSPO_1000000">
+ <oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">preaxial_to</oboInOwl:id>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">preaxial_to</rdfs:label>
- <oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">preaxial_to</oboInOwl:id>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">BSPO:1000000</oboInOwl:hasDbXref>
<oboInOwl:hasRelatedSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">medial (tibial) to</oboInOwl:hasRelatedSynonym>
<oboInOwl:shorthand rdf:datatype="http://www.w3.org/2001/XMLSchema#string">preaxial_to</oboInOwl:shorthand>
+ <obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">x preaxial_to y iff x is further along the preaxial-postaxial axis than y, towards the front.</obo:IAO_0000115>
<oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">uberon</oboInOwl:hasOBONamespace>
- <obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">x preaxial_to y iff x is further along the preaxial-postaxial axis than y, towards the front.</obo:IAO_0000115>
+ <obo...
[truncated message content] |
|
From: <cmu...@us...> - 2020-06-27 18:04:50
|
Revision: 5426
http://sourceforge.net/p/obo/svn/5426
Author: cmungall
Date: 2020-06-27 18:04:49 +0000 (Sat, 27 Jun 2020)
Log Message:
-----------
new-release
Added Paths:
-----------
uberon/releases/2020-06-05/trunk/
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <cmu...@us...> - 2020-06-27 16:44:41
|
Revision: 5425
http://sourceforge.net/p/obo/svn/5425
Author: cmungall
Date: 2020-06-27 16:43:52 +0000 (Sat, 27 Jun 2020)
Log Message:
-----------
new
Modified Paths:
--------------
uberon/trunk/basic.obo
uberon/trunk/basic.owl
uberon/trunk/bridge/uberon-bridge-to-aao.obo
uberon/trunk/bridge/uberon-bridge-to-aao.owl
uberon/trunk/bridge/uberon-bridge-to-aeo.obo
uberon/trunk/bridge/uberon-bridge-to-aeo.owl
uberon/trunk/bridge/uberon-bridge-to-bila.obo
uberon/trunk/bridge/uberon-bridge-to-bila.owl
uberon/trunk/bridge/uberon-bridge-to-caro.obo
uberon/trunk/bridge/uberon-bridge-to-caro.owl
uberon/trunk/bridge/uberon-bridge-to-dhba.obo
uberon/trunk/bridge/uberon-bridge-to-dhba.owl
uberon/trunk/bridge/uberon-bridge-to-dmba.obo
uberon/trunk/bridge/uberon-bridge-to-dmba.owl
uberon/trunk/bridge/uberon-bridge-to-efo.obo
uberon/trunk/bridge/uberon-bridge-to-efo.owl
uberon/trunk/bridge/uberon-bridge-to-ehdaa.obo
uberon/trunk/bridge/uberon-bridge-to-ehdaa.owl
uberon/trunk/bridge/uberon-bridge-to-ehdaa2.obo
uberon/trunk/bridge/uberon-bridge-to-ehdaa2.owl
uberon/trunk/bridge/uberon-bridge-to-emapa.obo
uberon/trunk/bridge/uberon-bridge-to-emapa.owl
uberon/trunk/bridge/uberon-bridge-to-fbbt.obo
uberon/trunk/bridge/uberon-bridge-to-fbbt.owl
uberon/trunk/bridge/uberon-bridge-to-fbdv.obo
uberon/trunk/bridge/uberon-bridge-to-fbdv.owl
uberon/trunk/bridge/uberon-bridge-to-fma.obo
uberon/trunk/bridge/uberon-bridge-to-fma.owl
uberon/trunk/bridge/uberon-bridge-to-go.obo
uberon/trunk/bridge/uberon-bridge-to-go.owl
uberon/trunk/bridge/uberon-bridge-to-hao.obo
uberon/trunk/bridge/uberon-bridge-to-hao.owl
uberon/trunk/bridge/uberon-bridge-to-hba.obo
uberon/trunk/bridge/uberon-bridge-to-hba.owl
uberon/trunk/bridge/uberon-bridge-to-ma.obo
uberon/trunk/bridge/uberon-bridge-to-ma.owl
uberon/trunk/bridge/uberon-bridge-to-mba.obo
uberon/trunk/bridge/uberon-bridge-to-mba.owl
uberon/trunk/bridge/uberon-bridge-to-mfo.obo
uberon/trunk/bridge/uberon-bridge-to-mfo.owl
uberon/trunk/bridge/uberon-bridge-to-og.obo
uberon/trunk/bridge/uberon-bridge-to-og.owl
uberon/trunk/bridge/uberon-bridge-to-pba.obo
uberon/trunk/bridge/uberon-bridge-to-pba.owl
uberon/trunk/bridge/uberon-bridge-to-sctid.obo
uberon/trunk/bridge/uberon-bridge-to-sctid.owl
uberon/trunk/bridge/uberon-bridge-to-spd.obo
uberon/trunk/bridge/uberon-bridge-to-spd.owl
uberon/trunk/bridge/uberon-bridge-to-tads.obo
uberon/trunk/bridge/uberon-bridge-to-tads.owl
uberon/trunk/bridge/uberon-bridge-to-tao.obo
uberon/trunk/bridge/uberon-bridge-to-tao.owl
uberon/trunk/bridge/uberon-bridge-to-tgma.obo
uberon/trunk/bridge/uberon-bridge-to-tgma.owl
uberon/trunk/bridge/uberon-bridge-to-vsao.obo
uberon/trunk/bridge/uberon-bridge-to-vsao.owl
uberon/trunk/bridge/uberon-bridge-to-wbbt.obo
uberon/trunk/bridge/uberon-bridge-to-wbbt.owl
uberon/trunk/bridge/uberon-bridge-to-wbls.obo
uberon/trunk/bridge/uberon-bridge-to-wbls.owl
uberon/trunk/bridge/uberon-bridge-to-xao.obo
uberon/trunk/bridge/uberon-bridge-to-xao.owl
uberon/trunk/bridge/uberon-bridge-to-zfa.obo
uberon/trunk/bridge/uberon-bridge-to-zfa.owl
uberon/trunk/bridge/uberon-bridge-to-zfs.obo
uberon/trunk/bridge/uberon-bridge-to-zfs.owl
uberon/trunk/chebi_import.owl
uberon/trunk/cl_import.owl
uberon/trunk/composite-metazoan-basic.obo
uberon/trunk/composite-metazoan.obo
uberon/trunk/composite-metazoan.owl
uberon/trunk/composite-vertebrate.obo
uberon/trunk/composite-vertebrate.owl
uberon/trunk/core.obo
uberon/trunk/core.owl
uberon/trunk/ext.obo
uberon/trunk/ext.owl
uberon/trunk/go_import.owl
uberon/trunk/merged.obo
uberon/trunk/merged.owl
uberon/trunk/ncbitaxon_import.owl
uberon/trunk/pato_import.owl
uberon/trunk/pr_import.owl
uberon/trunk/reports/stages-metazoan-report.tsv
uberon/trunk/ro_import.owl
uberon/trunk/subsets/amniote-basic.obo
uberon/trunk/subsets/amniote-basic.owl
uberon/trunk/subsets/circulatory-minimal.obo
uberon/trunk/subsets/cranial-minimal.obo
uberon/trunk/subsets/cumbo.owl
uberon/trunk/subsets/digestive-minimal.obo
uberon/trunk/subsets/efo-slim.obo
uberon/trunk/subsets/efo-slim.owl
uberon/trunk/subsets/euarchontoglires-basic.obo
uberon/trunk/subsets/euarchontoglires-basic.owl
uberon/trunk/subsets/excretory-minimal.obo
uberon/trunk/subsets/immune-minimal.obo
uberon/trunk/subsets/musculoskeletal-minimal.obo
uberon/trunk/subsets/nervous-minimal.obo
uberon/trunk/subsets/pulmonary-minimal.obo
uberon/trunk/subsets/reproductive-minimal.obo
uberon/trunk/subsets/sensory-minimal.obo
uberon/trunk/uberon-base.owl
uberon/trunk/uberon.obo
uberon/trunk/uberon.owl
Modified: uberon/trunk/basic.obo
===================================================================
--- uberon/trunk/basic.obo 2020-06-27 16:37:55 UTC (rev 5424)
+++ uberon/trunk/basic.obo 2020-06-27 16:43:52 UTC (rev 5425)
@@ -1,5 +1,5 @@
format-version: 1.2
-data-version: uberon/releases/2020-05-07/basic.owl
+data-version: uberon/releases/2020-06-05/basic.owl
subsetdef: cumbo "CUMBO"
subsetdef: cyclostome_subset "cyclostome structures"
subsetdef: defined_by_cytoarchitecture "brain region defined by cyto-architecture"
@@ -54,7 +54,7 @@
remark: Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/TEMP>) VersionIRI(<null>))) [Axioms: 437 Logical Axioms: 0]
remark: Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/uberon-bridge-to-bfo.owl>) VersionIRI(<null>))) [Axioms: 20 Logical Axioms: 9]
remark: Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/uberon/disjoint_union_over.owl>) VersionIRI(<null>))) [Axioms: 38 Logical Axioms: 38]
-remark: Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/uberon/ext.owl>) VersionIRI(<null>))) [Axioms: 26459 Logical Axioms: 4902]
+remark: Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/uberon/ext.owl>) VersionIRI(<null>))) [Axioms: 26464 Logical Axioms: 4904]
remark: Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/uberon/reflexivity_axioms.owl>) VersionIRI(<null>))) [Axioms: 2 Logical Axioms: 2]
ontology: uberon/basic
treat-xrefs-as-has-subclass: EHDAA
@@ -29579,8 +29579,8 @@
def: "Ganglion containing neurons that receive innervation from parasympathetic neurons in the central nervous system and subserves parasympathetic functions through innervation of smooth muscle, cardiac muscle and glands." [NLXANAT:100303]
subset: pheno_slim
subset: uberon_slim
+synonym: "ganglion parasympathicum" RELATED LATIN [http://en.wikipedia.org/wiki/Parasympathetic_ganglion]
synonym: "ganglion parasympathicum" RELATED [BTO:0001256]
-synonym: "ganglion parasympathicum" RELATED LATIN [http://en.wikipedia.org/wiki/Parasympathetic_ganglion]
xref: BTO:0001256
xref: EHDAA2:0001400
xref: EMAPA:32813
@@ -29713,8 +29713,8 @@
def: "An arrangement of nerve fibers, running from the spine where it proceeds through the neck then the axilla and into the arm where it innervates skin and muscle. [WP,modified]." [http://en.wikipedia.org/wiki/Brachial_plexus, UBERON:cjm]
subset: uberon_slim
synonym: "brachial plexus" EXACT [MA:0001180]
+synonym: "plexus brachialis" RELATED LATIN [http://en.wikipedia.org/wiki/Brachial_plexus]
synonym: "plexus brachialis" RELATED [http://en.wikipedia.org/wiki/Brachial_plexus]
-synonym: "plexus brachialis" RELATED LATIN [http://en.wikipedia.org/wiki/Brachial_plexus]
xref: Brachial:plexus
xref: EHDAA2:0000180
xref: EHDAA:3782
@@ -32412,7 +32412,7 @@
xref: NCIT:C33797
xref: UMLS:C1179002 {source="ncithesaurus:Tracheal_Epithelium"}
xref: VHOG:0001045
-is_a: UBERON:0004815 ! lower respiratory tract epithelium
+is_a: UBERON:0008397 ! tracheobronchial epithelium
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0003126 ! trachea
relationship: develops_from UBERON:0003258 ! endoderm of foregut
@@ -36328,7 +36328,7 @@
xref: MA:0001839
xref: NCIT:C32231
xref: UMLS:C0599333 {source="ncithesaurus:Bronchial_Epithelium"}
-is_a: UBERON:0004815 ! lower respiratory tract epithelium
+is_a: UBERON:0008397 ! tracheobronchial epithelium
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0002185 ! bronchus
relationship: part_of UBERON:0002185 ! bronchus
@@ -36840,7 +36840,7 @@
[Term]
id: UBERON:0002048
name: lung
-def: "Respiration organ that develops as an oupocketing of the esophagus." [http://orcid.org/0000-0002-6601-2165]
+def: "Respiration organ that develops as an outpocketing of the esophagus." [http://orcid.org/0000-0002-6601-2165]
comment: Snakes and limbless lizards typically possess only the right lung as a major respiratory organ; the left lung is greatly reduced, or even absent. Amphisbaenians, however, have the opposite arrangement, with a major left lung, and a reduced or absent right lung [WP]
subset: efo_slim
subset: major_organ
@@ -42750,8 +42750,8 @@
xref: FMA:77624
xref: GAID:633
xref: HBA:9303
+xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=279 {source="BIRNLEX:1137"}
xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=279
-xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=279 {source="BIRNLEX:1137"}
xref: http://linkedlifedata.com/resource/umls/id/C0028936
xref: http://www.snomedbrowser.com/Codes/Details/279394006
xref: MA:0000194
@@ -50938,8 +50938,8 @@
synonym: "commissure of cranial colliculus" EXACT [OBOL:automatic]
synonym: "commissure of optic tectum" EXACT [OBOL:automatic]
synonym: "commissure of superior colliculi" EXACT [FMA:72418]
+synonym: "commissure of the superior colliculi" RELATED [BAMS:csc]
synonym: "commissure of the superior colliculi" RELATED [BAMS:SCC]
-synonym: "commissure of the superior colliculi" RELATED [BAMS:csc]
synonym: "commissure of the superior colliculus" RELATED [NeuroNames:475]
synonym: "cranial colliculus commissure" EXACT [OBOL:automatic]
synonym: "intertectal commissure" EXACT SENSU [ZFA:0000684]
@@ -60796,8 +60796,8 @@
synonym: "lateral part of substantia nigra" EXACT [FMA:76844]
synonym: "pars lateralis" EXACT [BIRNLEX:866]
synonym: "pars lateralis substantiae nigrae" EXACT LATIN [FMA:76844, FMA:TA]
+synonym: "substantia nigra lateral part" RELATED [BAMS:SNL]
synonym: "substantia nigra lateral part" RELATED [BAMS:SNl]
-synonym: "substantia nigra lateral part" RELATED [BAMS:SNL]
synonym: "substantia nigra, lateral division" RELATED [BAMS:SNL]
synonym: "substantia nigra, lateral part" EXACT [ABA:SNI]
synonym: "substantia nigra, pars lateralis" RELATED [BAMS:SNL]
@@ -95102,7 +95102,9 @@
xref: FMA:7473
xref: http://www.snomedbrowser.com/Codes/Details/197423006
xref: MA:0002937
+is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0011148 ! submucosal gland
+is_a: UBERON:0036225 ! respiratory system gland
relationship: part_of UBERON:0002202 ! submucosa of trachea
[Term]
@@ -97223,8 +97225,8 @@
synonym: "inferior glossopharyngeal ganglion" EXACT [FMA:53475]
synonym: "inferior glossopharyngeal ganglion of the glossopharyngeal (IX) nerve" EXACT [MP:0001084]
synonym: "ninth cranial nerve inferior ganglion" EXACT [FMA:53475]
+synonym: "petrosal ganglion" RELATED [MP:0001084]
synonym: "petrosal ganglion" RELATED [http://www.merriam-webster.com/medical/petrosal%20ganglion, MP:0001084]
-synonym: "petrosal ganglion" RELATED [MP:0001084]
synonym: "petrous ganglion" RELATED [http://en.wikipedia.org/wiki/File\:Gray791.png, http://en.wikipedia.org/wiki/Inferior_ganglion_of_glossopharyngeal_nerve, http://www.merriam-webster.com/medical/petrous%20ganglion]
xref: EHDAA2:0000711
xref: EMAPA:17153
@@ -105826,8 +105828,8 @@
xref: BIRNLEX:1582
xref: BIRNLEX:1774
xref: FMA:68638
+xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=95 {source="BIRNLEX:1582"}
xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=95
-xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=95 {source="BIRNLEX:1582"}
xref: http://linkedlifedata.com/resource/umls/id/C1272502
xref: UMLS:C1272502 {source="BIRNLEX:1774"}
is_a: UBERON:0013529 {source="NIFSTD"} ! Brodmann area
@@ -106214,8 +106216,8 @@
xref: BAMS:11nf
xref: BIRNLEX:916
xref: FMA:72626
+xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=792 {source="BIRNLEX:916"}
xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=792
-xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=792 {source="BIRNLEX:916"}
xref: http://linkedlifedata.com/resource/umls/id/C0175549
xref: UMLS:C0175549 {source="BIRNLEX:916"}
is_a: UBERON:0000122 ! neuron projection bundle
@@ -122075,7 +122077,10 @@
synonym: "bronchotracheal epithelium" RELATED [BTO:0002925]
xref: BTO:0002925
xref: CALOHA:TS-1063
-is_a: UBERON:0004802 {source="BTO"} ! respiratory tract epithelium
+is_a: UBERON:0004815 ! lower respiratory tract epithelium
+intersection_of: UBERON:0000483 ! epithelium
+intersection_of: part_of UBERON:0007196 ! tracheobronchial tree
+relationship: part_of UBERON:0007196 ! tracheobronchial tree
[Term]
id: UBERON:0008404
@@ -139656,9 +139661,6 @@
xref: EMAPA:37970 {source="MA:th"}
xref: Submucosal:glands
is_a: UBERON:0000414 ! mucous gland
-is_a: UBERON:0004119 ! endoderm-derived structure
-is_a: UBERON:0036225 ! respiratory system gland
-relationship: part_of UBERON:0003126 ! trachea
[Term]
id: UBERON:0011149
@@ -152100,8 +152102,8 @@
xref: Brodmann_area:10
xref: DHBA:146034836
xref: FMA:68607
+xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=76
xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=76 {source="BIRNLEX:1741"}
-xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=76
xref: http://linkedlifedata.com/resource/umls/id/C1272532
xref: UMLS:C1272532 {source="BIRNLEX:1741"}
is_a: UBERON:0013529 {source="NIFSTD"} ! Brodmann area
@@ -172251,8 +172253,8 @@
[Term]
id: UBERON:0022681
name: obsolete regional part of cerebral peduncle
+synonym: "regional part of cerebral peduncle" EXACT HUMAN_PREFERRED [BIRNLEX:1209]
synonym: "regional part of cerebral peduncle" EXACT [BIRNLEX:1209]
-synonym: "regional part of cerebral peduncle" EXACT HUMAN_PREFERRED [BIRNLEX:1209]
is_obsolete: true
consider: BIRNLEX:1209
@@ -172259,8 +172261,8 @@
[Term]
id: UBERON:0022695
name: orbital gyri complex
+synonym: "orbital gyri complex" EXACT [BIRNLEX:1223]
synonym: "orbital gyri complex" EXACT HUMAN_PREFERRED [BIRNLEX:1223]
-synonym: "orbital gyri complex" EXACT [BIRNLEX:1223]
synonym: "orgital_gyri" RELATED [BIRNLEX:1223]
xref: BIRNLEX:1223
xref: http://linkedlifedata.com/resource/umls/id/C0152301
@@ -172392,8 +172394,8 @@
[Term]
id: UBERON:0022877
name: obsolete regional part of oculomotor nuclear complex
+synonym: "regional part of oculomotor nuclear complex" EXACT HUMAN_PREFERRED [BIRNLEX:1405]
synonym: "regional part of oculomotor nuclear complex" EXACT [BIRNLEX:1405]
-synonym: "regional part of oculomotor nuclear complex" EXACT HUMAN_PREFERRED [BIRNLEX:1405]
is_obsolete: true
consider: BIRNLEX:1405
@@ -172588,8 +172590,8 @@
[Term]
id: UBERON:0023255
name: sub-lobar region
+synonym: "sub-lobar region" EXACT HUMAN_PREFERRED [BIRNLEX:1788]
synonym: "sub-lobar region" EXACT [BIRNLEX:1788]
-synonym: "sub-lobar region" EXACT HUMAN_PREFERRED [BIRNLEX:1788]
xref: BIRNLEX:1788
is_a: UBERON:0016526 {source="NIFSTD"} ! lobe of cerebral hemisphere
@@ -172791,8 +172793,8 @@
id: UBERON:0023623
name: ventral nerve root of sacral spinal cord
synonym: "anterior nerve root of sacral spinal cord" RELATED [BIRNLEX:755]
+synonym: "ventral nerve root of sacral spinal cord" EXACT HUMAN_PREFERRED [BIRNLEX:755]
synonym: "ventral nerve root of sacral spinal cord" EXACT [BIRNLEX:755]
-synonym: "ventral nerve root of sacral spinal cord" EXACT HUMAN_PREFERRED [BIRNLEX:755]
xref: BIRNLEX:755
is_a: UBERON:0009633 {source="NIFSTD"} ! root of sacral nerve
disjoint_from: UBERON:0026006 {source="NIFSTD"} ! dorsal nerve root of lumbar spinal cord
@@ -173419,8 +173421,8 @@
id: UBERON:0024110
name: basis pontis
def: "The basis pontis is the anterior portion of the pons." [http://en.wikipedia.org/wiki/Basilar_part_of_pons]
+synonym: "basis pontis" EXACT HUMAN_PREFERRED [NLXANAT:20090704]
synonym: "basis pontis" EXACT [NLXANAT:20090704]
-synonym: "basis pontis" EXACT HUMAN_PREFERRED [NLXANAT:20090704]
xref: http://en.wikipedia.org/wiki/Basilar_part_of_pons
xref: NLXANAT:20090704
is_a: UBERON:0002616 ! regional part of brain
@@ -173765,8 +173767,8 @@
[Term]
id: UBERON:0024749
name: obsolete predominantly gray regional part of temporal lobe
+synonym: "predominantly gray regional part of temporal lobe" EXACT HUMAN_PREFERRED [BIRNLEX:1633]
synonym: "predominantly gray regional part of temporal lobe" EXACT [BIRNLEX:1633]
-synonym: "predominantly gray regional part of temporal lobe" EXACT HUMAN_PREFERRED [BIRNLEX:1633]
is_obsolete: true
consider: BIRNLEX:1633
consider: UBERON:0016538
@@ -174002,8 +174004,8 @@
id: UBERON:0025182
name: obsolete regional part of gustatory epithelium
alt_id: UBERON:0025487
+synonym: "regional part of gustatory epithelium" EXACT [BIRNLEX:4100]
synonym: "regional part of gustatory epithelium" EXACT HUMAN_PREFERRED [BIRNLEX:4100]
-synonym: "regional part of gustatory epithelium" EXACT [BIRNLEX:4100]
is_obsolete: true
consider: BIRNLEX:4100
consider: http://uri.neuinfo.org/nif/nifstd/nifext_13
@@ -174382,8 +174384,8 @@
[Term]
id: UBERON:0025927
name: obsolete regional part of enteric nervous system
+synonym: "regional part of enteric nervous system" EXACT [BIRNLEX:1179]
synonym: "regional part of enteric nervous system" EXACT HUMAN_PREFERRED [BIRNLEX:1179]
-synonym: "regional part of enteric nervous system" EXACT [BIRNLEX:1179]
is_obsolete: true
consider: BIRNLEX:1179
@@ -174958,8 +174960,8 @@
[Term]
id: UBERON:0026982
name: obsolete predominantly gray midline regional part of thalamus
+synonym: "predominantly gray midline regional part of thalamus" EXACT HUMAN_PREFERRED [BIRNLEX:849]
synonym: "predominantly gray midline regional part of thalamus" EXACT [BIRNLEX:849]
-synonym: "predominantly gray midline regional part of thalamus" EXACT HUMAN_PREFERRED [BIRNLEX:849]
is_obsolete: true
consider: BIRNLEX:849
@@ -175174,8 +175176,8 @@
[Term]
id: UBERON:0027331
name: flocculonodular lobe, hemisphere portion
+synonym: "hemispheric part of the flocculonodular lobe of the cerebellum" EXACT [NLXANAT:20081260]
synonym: "hemispheric part of the flocculonodular lobe of the cerebellum" EXACT HUMAN_PREFERRED [NLXANAT:20081260]
-synonym: "hemispheric part of the flocculonodular lobe of the cerebellum" EXACT [NLXANAT:20081260]
xref: NLXANAT:20081260
is_a: UBERON:0002749 ! regional part of cerebellar cortex
intersection_of: UBERON:0002616 ! regional part of brain
@@ -175383,8 +175385,8 @@
[Term]
id: UBERON:0027760
name: obsolete regional part of superior olive
+synonym: "regional part of superior olive" EXACT HUMAN_PREFERRED [BIRNLEX:1382]
synonym: "regional part of superior olive" EXACT [BIRNLEX:1382]
-synonym: "regional part of superior olive" EXACT HUMAN_PREFERRED [BIRNLEX:1382]
is_obsolete: true
consider: BIRNLEX:1382
@@ -175828,8 +175830,8 @@
[Term]
id: UBERON:0028439
name: Ongur, Price, and Ferry (2003) area Iapm
+synonym: "ongur, price, and ferry (2003) area iapm" EXACT HUMAN_PREFERRED [BIRNLEX:4094]
synonym: "ongur, price, and ferry (2003) area iapm" EXACT [BIRNLEX:4094]
-synonym: "ongur, price, and ferry (2003) area iapm" EXACT HUMAN_PREFERRED [BIRNLEX:4094]
xref: BIRNLEX:4094
is_a: UBERON:0026777 {source="NIFSTD"} ! Ongur, Price, and Ferry (2003) prefrontal cortical partition scheme region
@@ -175852,8 +175854,8 @@
[Term]
id: UBERON:0028615
name: obsolete predominantly gray part of Intralaminar nuclear group
+synonym: "predominantly gray part of intralaminar nuclear group" EXACT [BIRNLEX:852]
synonym: "predominantly gray part of intralaminar nuclear group" EXACT HUMAN_PREFERRED [BIRNLEX:852]
-synonym: "predominantly gray part of intralaminar nuclear group" EXACT [BIRNLEX:852]
is_obsolete: true
consider: BIRNLEX:852
@@ -216089,6 +216091,14 @@
created_by: WD
[Term]
+id: UBERON:4300275
+name: suborbital stay
+def: "A backwards extension of the third circumorbital bone (part of the lateral head/cheek skeleton, below the eye socket) across the cheek to the preoperculum, to which it is connected in most species [wikipedia]" [https://en.wikipedia.org/wiki/Scorpaeniformes]
+is_a: UBERON:0010313 ! neural crest-derived structure
+is_a: UBERON:4100000 ! skeletal element projection
+relationship: part_of UBERON:2001408 ! infraorbital 3
+
+[Term]
id: UBERON:4400000
name: metapterygium cartilage
namespace: none
@@ -219439,6 +219449,46 @@
relationship: part_of UBERON:0000403 ! scalp
created_by: http://orcid.org/0000-0001-9897-3238
+[Term]
+id: UBERON:8300001
+name: right forelimb
+def: "A forelimb that is on the right side of a pectoral complex." [UBERONREF:0000003]
+xref: FMA:7185
+is_a: UBERON:0002102 ! forelimb
+is_a: UBERON:0015212 ! lateral structure
+relationship: part_of UBERON:0010708 ! pectoral complex
+created_by: http://orcid.org/0000-0001-9897-3238
+
+[Term]
+id: UBERON:8300002
+name: left forelimb
+def: "A forelimb that is on the left side of a pectoral complex." [UBERONREF:0000003]
+xref: FMA:7186
+is_a: UBERON:0002102 ! forelimb
+is_a: UBERON:0015212 ! lateral structure
+relationship: part_of UBERON:0010708 ! pectoral complex
+created_by: http://orcid.org/0000-0001-9897-3238
+
+[Term]
+id: UBERON:8300003
+name: right hindlimb
+def: "A hindlimb that is on the right side of a pelvic complex." [UBERONREF:0000003]
+xref: FMA:7187
+is_a: UBERON:0002103 ! hindlimb
+is_a: UBERON:0015212 ! lateral structure
+relationship: part_of UBERON:0010709 ! pelvic complex
+created_by: http://orcid.org/0000-0001-9897-3238
+
+[Term]
+id: UBERON:8300004
+name: left hindlimb
+def: "A hindlimb that is on the left side of a pelvic complex." [UBERONREF:0000003]
+xref: FMA:7188
+is_a: UBERON:0002103 ! hindlimb
+is_a: UBERON:0015212 ! lateral structure
+relationship: part_of UBERON:0010709 ! pelvic complex
+created_by: http://orcid.org/0000-0001-9897-3238
+
[Typedef]
id: action_notes
name: actions_notes
Modified: uberon/trunk/basic.owl
===================================================================
--- uberon/trunk/basic.owl 2020-06-27 16:37:55 UTC (rev 5424)
+++ uberon/trunk/basic.owl 2020-06-27 16:43:52 UTC (rev 5425)
@@ -16,7 +16,7 @@
xmlns:terms="http://purl.org/dc/terms/"
xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/basic.owl">
- <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/releases/2020-05-07/basic.owl"/>
+ <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/releases/2020-06-05/basic.owl"/>
<dc:contributor rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Alan Ruttenberg</dc:contributor>
<dc:contributor rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Alexander Diehl</dc:contributor>
<dc:contributor rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Ann Maglia</dc:contributor>
@@ -180,7 +180,7 @@
<rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/TEMP>) VersionIRI(<null>))) [Axioms: 437 Logical Axioms: 0]</rdfs:comment>
<rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/uberon-bridge-to-bfo.owl>) VersionIRI(<null>))) [Axioms: 20 Logical Axioms: 9]</rdfs:comment>
<rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/uberon/disjoint_union_over.owl>) VersionIRI(<null>))) [Axioms: 38 Logical Axioms: 38]</rdfs:comment>
- <rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/uberon/ext.owl>) VersionIRI(<null>))) [Axioms: 26459 Logical Axioms: 4902]</rdfs:comment>
+ <rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/uberon/ext.owl>) VersionIRI(<null>))) [Axioms: 26464 Logical Axioms: 4904]</rdfs:comment>
<rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/uberon/reflexivity_axioms.owl>) VersionIRI(<null>))) [Axioms: 2 Logical Axioms: 2]</rdfs:comment>
<foaf:homepage rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://uberon.org</foaf:homepage>
</owl:Ontology>
@@ -109460,7 +109460,7 @@
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
- <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0004815"/>
+ <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0008397"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
@@ -122903,7 +122903,7 @@
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
- <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0004815"/>
+ <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0008397"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
@@ -124813,7 +124813,7 @@
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000118"/>
</owl:Restriction>
</rdfs:subClassOf>
- <obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Respiration organ that develops as an oupocketing of the esophagus.</obo:IAO_0000115>
+ <obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Respiration organ that develops as an outpocketing of the esophagus.</obo:IAO_0000115>
<obo:UBPROP_0000001 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Either of two organs which allow gas exchange absorbing oxygen from inhaled air and releasing carbon dioxide with exhaled air.[AAO]</obo:UBPROP_0000001>
<obo:UBPROP_0000003 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Lungs had already developed as paired ventral pockets from the intestine in the ancestor of Osteognathostomata. (...) In actinopterygian fishes, apart from Cladistia, the ventral intestinal pocket migrates dorsally and becomes the swim-bladder, a mainly hydrostatical organ (reference 1); Comparative transcriptome analyses indicate molecular homology of zebrafish swimbladder and Mammalian lung (reference 2).[well established][VHOG]</obo:UBPROP_0000003>
<obo:UBPROP_0000007 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">pulmonary</obo:UBPROP_0000007>
@@ -124869,7 +124869,7 @@
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/UBERON_0002048"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
- <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Respiration organ that develops as an oupocketing of the esophagus.</owl:annotatedTarget>
+ <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Respiration organ that develops as an outpocketing of the esophagus.</owl:annotatedTarget>
<oboInOwl:hasDbXref rdf:resource="http://orcid.org/0000-0002-6601-2165"/>
</owl:Axiom>
<owl:Axiom>
@@ -355197,7 +355197,9 @@
<!-- http://purl.obolibrary.org/obo/UBERON_0005203 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0005203">
+ <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0004119"/>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0011148"/>
+ <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0036225"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
@@ -456844,7 +456846,24 @@
<!-- http://purl.obolibrary.org/obo/UBERON_0008397 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0008397">
- <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0004802"/>
+ <owl:equivalentClass>
+ <owl:Class>
+ <owl:intersectionOf rdf:parseType="Collection">
+ <rdf:Description rdf:about="http://purl.obolibrary.org/obo/UBERON_0000483"/>
+ <owl:Restriction>
+ <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
+ <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_0007196"/>
+ </owl:Restriction>
+ </owl:intersectionOf>
+ </owl:Class>
+ </owl:equivalentClass>
+ <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0004815"/>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
+ <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_0007196"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
<obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Epithelium pertaining to the trachea and bronchi.</obo:IAO_0000115>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">BTO:0002925</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">CALOHA:TS-1063</oboInOwl:hasDbXref>
@@ -456855,12 +456874,6 @@
</owl:Class>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/UBERON_0008397"/>
- <owl:annotatedProperty rdf:resource="http://www.w3.org/2000/01/rdf-schema#subClassOf"/>
- <owl:annotatedTarget rdf:resource="http://purl.obolibrary.org/obo/UBERON_0004802"/>
- <oboInOwl:source rdf:datatype="http://www.w3.org/2001/XMLSchema#string">BTO</oboInOwl:source>
- </owl:Axiom>
- <owl:Axiom>
- <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/UBERON_0008397"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Epithelium pertaining to the trachea and bronchi.</owl:annotatedTarget>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Dorlands_Medical_Dictionary:MerckMedicus</oboInOwl:hasDbXref>
@@ -525083,14 +525096,6 @@
<owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0011148">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000414"/>
- <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0004119"/>
- <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0036225"/>
- <rdfs:subClassOf>
- <owl:Restriction>
- <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
- <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_0003126"/>
- </owl:Restriction>
- </rdfs:subClassOf>
<obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Gland of the lamina epithelialis mucosae which perforate the lamina muscularis, with their adenomeres located in the submucosal connective tissue.</obo:IAO_0000115>
<oboInOwl:hasDbXref rdf:resource="http://en.wikipedia.org/wiki/Submucosal_glands"/>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">BTO:0003751</oboInOwl:hasDbXref>
@@ -770082,6 +770087,29 @@
+ <!-- http://purl.obolibrary.org/obo/UBERON_4300275 -->
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_4300275">
+ <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0010313"/>
+ <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_4100000"/>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
+ <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_2001408"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A backwards extension of the third circumorbital bone (part of the lateral head/cheek skeleton, below the eye socket) across the cheek to the preoperculum, to which it is connected in most species [wikipedia]</obo:IAO_0000115>
+ <rdfs:label xml:lang="en">suborbital stay</rdfs:label>
+ </owl:Class>
+ <owl:Axiom>
+ <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/UBERON_4300275"/>
+ <owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
+ <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A backwards extension of the third circumorbital bone (part of the lateral head/cheek skeleton, below the eye socket) across the cheek to the preoperculum, to which it is connected in most species [wikipedia]</owl:annotatedTarget>
+ <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">https://en.wikipedia.org/wiki/Scorpaeniformes</oboInOwl:hasDbXref>
+ </owl:Axiom>
+
+
+
<!-- http://purl.obolibrary.org/obo/UBERON_4400000 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_4400000">
@@ -780987,6 +781015,118 @@
+ <!-- http://purl.obolibrary.org/obo/UBERON_8300001 -->
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_8300001">
+ <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0002102"/>
+ <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0015212"/>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
+ <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_0010708"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A forelimb that is on the right side of a pectoral complex.</obo:IAO_0000115>
+ <obo:UBPROP_0000006 rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern</obo:UBPROP_0000006>
+ <oboInOwl:created_by rdf:datatype="http://www.w3.org/2001/XMLSchema#string">http://orcid.org/0000-0001-9897-3238</oboInOwl:created_by>
+ <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">FMA:7185</oboInOwl:hasDbXref>
+ <oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">uberon</oboInOwl:hasOBONamespace>
+ <oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">UBERON:8300001</oboInOwl:id>
+ <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">right forelimb</rdfs:label>
+ </owl:Class>
+ <owl:Axiom>
+ <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/UBERON_8300001"/>
+ <owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
+ <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A forelimb that is on the right side of a pectoral complex.</owl:annotatedTarget>
+ <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">UBERONREF:0000003</oboInOwl:hasDbXref>
+ </owl:Axiom>
+
+
+
+ <!-- http://purl.obolibrary.org/obo/UBERON_8300002 -->
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_8300002">
+ <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0002102"/>
+ <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0015212"/>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
+ <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_0010708"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A forelimb that is on the left side of a pectoral complex.</obo:IAO_0000115>
+ <obo:UBPROP_0000006 rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern</obo:UBPROP_0000006>
+ <oboInOwl:created_by rdf:datatype="http://www.w3.org/2001/XMLSchema#string">http://orcid.org/0000-0001-9897-3238</oboInOwl:created_by>
+ <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">FMA:7186</oboInOwl:hasDbXref>
+ <oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">uberon</oboInOwl:hasOBONamespace>
+ <oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">UBERON:8300002</oboInOwl:id>
+ <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">left forelimb</rdfs:label>
+ </owl:Class>
+ <owl:Axiom>
+ <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/UBERON_8300002"/>
+ <owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
+ <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A forelimb that is on the left side of a pectoral complex.</owl:annotatedTarget>
+ <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">UBERONREF:0000003</oboInOwl:hasDbXref>
+ </owl:Axiom>
+
+
+
+ <!-- http://purl.obolibrary.org/obo/UBERON_8300003 -->
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_8300003">
+ <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0002103"/>
+ <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0015212"/>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
+ <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_0010709"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A hindlimb that is on the right side of a pelvic complex.</obo:IAO_0000115>
+ <obo:UBPROP_0000006 rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern</obo:UBPROP_0000006>
+ <oboInOwl:created_by rdf:datatype="http://www.w3.org/2001/XMLSchema#string">http://orcid.org/0000-0001-9897-3238</oboInOwl:created_by>
+ <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">FMA:7187</oboInOwl:hasDbXref>
+ <oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">uberon</oboInOwl:hasOBONamespace>
+ <oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">UBERON:8300003</oboInOwl:id>
+ <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">right hindlimb</rdfs:label>
+ </owl:Class>
+ <owl:Axiom>
+ <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/UBERON_8300003"/>
+ <owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
+ <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A hindlimb that is on the right side of a pelvic complex.</owl:annotatedTarget>
+ <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">UBERONREF:0000003</oboInOwl:hasDbXref>
+ </owl:Axiom>
+
+
+
+ <!-- http://purl.obolibrary.org/obo/UBERON_8300004 -->
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_8300004">
+ <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0002103"/>
+ <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0015212"/>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
+ <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_0010709"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A hindlimb that is on the left side of a pelvic complex.</obo:IAO_0000115>
+ <obo:UBPROP_0000006 rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern</obo:UBPROP_0000006>
+ <oboInOwl:created_by rdf:datatype="http://www.w3.org/2001/XMLSchema#string">http://orcid.org/0000-0001-9897-3238</oboInOwl:created_by>
+ <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">FMA:7188</oboInOwl:hasDbXref>
+ <oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">uberon</oboInOwl:hasOBONamespace>
+ <oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">UBERON:8300004</oboInOwl:id>
+ <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">left hindlimb</rdfs:label>
+ </owl:Class>
+ <owl:Axiom>
+ <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/UBERON_8300004"/>
+ <owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
+ <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A hindlimb that is on the left side of a pelvic complex.</owl:annotatedTarget>
+ <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">UBERONREF:0000003</oboInOwl:hasDbXref>
+ </owl:Axiom>
+
+
+
<!-- http://purl.obolibrary.org/obo/ZFA_0005228 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ZFA_0005228">
@@ -781076,17 +781216,17 @@
-->
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/BFO_0000051">
+ <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">has part</rdfs:label>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">BFO:0000051</oboInOwl:hasDbXref>
- <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">has part</rdfs:label>
<oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">has_part</oboInOwl:id>
<oboInOwl:shorthand rdf:datatype="http://www.w3.org/2001/XMLSchema#string">has_part</oboInOwl:shorthand>
<oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">uberon</oboInOwl:hasOBONamespace>
</rdf:Description>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/BFO_0000062">
+ <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">preceded_by</rdfs:label>
<oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">preceded_by</oboInOwl:id>
- <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">preceded_by</rdfs:label>
+ <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">BFO:0000062</oboInOwl:hasDbXref>
<oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">uberon</oboInOwl:hasOBONamespace>
- <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">BFO:0000062</oboInOwl:hasDbXref>
<oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">takes place after</oboInOwl:hasExactSynonym>
<obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">X preceded_by Y iff: end(Y) before_or_simultaneous_with start(X)</obo:IAO_0000115>
<oboInOwl:shorthand rdf:datatype="http://www.w3.org/2001/XMLSchema#string">preceded_by</oboInOwl:shorthand>
@@ -781130,11 +781270,11 @@
</rdf:Description>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/BSPO_0000096">
<obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">x anterior_to y iff x is further along the antero-posterior axis than y, towards the head. An antero-posterior axis is an axis that bisects an organism from head end to opposite end of body or tail: bearer</obo:IAO_0000115>
+ <oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">anterior_to</oboInOwl:id>
+ <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">anterior_to</rdfs:label>
<oboInOwl:creation_date rdf:datatype="http://www.w3.org/2001/XMLSchema#string">2009-07-31T02:15:46Z</oboInOwl:creation_date>
- <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">anterior_to</rdfs:label>
- <oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">anterior_to</oboInOwl:id>
+ <oboInOwl:created_by rdf:datatype="http://www.w3.org/2001/XMLSchema#string">cjm</oboInOwl:created_by>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">BSPO:0000096</oboInOwl:hasDbXref>
- <oboInOwl:created_by rdf:datatype="http://www.w3.org/2001/XMLSchema#string">cjm</oboInOwl:created_by>
<oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">uberon</oboInOwl:hasOBONamespace>
<oboInOwl:shorthand rdf:datatype="http://www.w3.org/2001/XMLSchema#string">anterior_to</oboInOwl:shorthand>
</rdf:Description>
@@ -781145,12 +781285,12 @@
<oboInOwl:hasDbXref rdf:resource="http://orcid.org/0000-0002-6601-2165"/>
</owl:Axiom>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/BSPO_0000097">
+ <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">BSPO:0000097</oboInOwl:hasDbXref>
<oboInOwl:shorthand rdf:datatype="http://www.w3.org/2001/XMLSchema#string">distal_to</oboInOwl:shorthand>
- <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">BSPO:0000097</oboInOwl:hasDbXref>
+ <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">distal_to</rdfs:label>
<oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">distal_to</oboInOwl:id>
- <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">distal_to</rdfs:label>
+ <obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">x distal_to y iff x is further along the proximo-distal axis than y, towards the appendage tip. A proximo-distal axis extends from tip of an appendage (distal) to where it joins the body (proximal).</obo:IAO_0000115>
<oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">uberon</oboInOwl:hasOBONamespace>
- <obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">x distal_to y iff x is further along the proximo-distal axis than y, towards the appendage tip. A proximo-distal axis extends from tip of an appendage (distal) to where it joins the body (proximal).</obo:IAO_0000115>
</rdf:Description>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BSPO_0000097"/>
@@ -781160,10 +781300,10 @@
</owl:Axiom>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/BSPO_0000098">
<oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">uberon</oboInOwl:hasOBONamespace>
+ <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">dorsal_to</rdfs:label>
<oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">dorsal_to</oboInOwl:id>
- <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">dorsal_to</rdfs:label>
+ <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">BSPO:0000098</oboInOwl:hasDbXref>
<obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">x dorsal_to y iff x is further along the dorso-ventral axis than y, towards the back. A dorso-ventral axis is an axis that bisects an organism from back (e.g. spinal column) to front (e.g. belly).</obo:IAO_0000115>
- <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">BSPO:0000098</oboInOwl:hasDbXref>
<oboInOwl:shorthand rdf:datatype="http://www.w3.org/2001/XMLSchema#string">dorsal_to</oboInOwl:shorthand>
</rdf:Description>
<owl:Axiom>
@@ -781176,8 +781316,8 @@
<oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">uberon</oboInOwl:hasOBONamespace>
<obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">x posterior_to y iff x is further along the antero-posterior axis than y, towards the body/tail. An antero-posterior axis is an axis that bisects an organism from head end to opposite end of body or tail.</obo:IAO_0000115>
<oboInOwl:hasNarrowSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">caudal_to</oboInOwl:hasNarrowSynonym>
+ <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">BSPO:0000099</oboInOwl:hasDbXref>
<oboInOwl:shorthand rdf:datatype="http://www.w3.org/2001/XMLSchema#string">posterior_to</oboInOwl:shorthand>
- <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">BSPO:0000099</oboInOwl:hasDbXref>
<oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">posterior_to</oboInOwl:id>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">posterior_to</rdfs:label>
</rdf:Description>
@@ -781192,8 +781332,8 @@
<oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">proximal_to</oboInOwl:id>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">proximal_to</rdfs:label>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">BSPO:0000100</oboInOwl:hasDbXref>
+ <oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">uberon</oboInOwl:hasOBONamespace>
<oboInOwl:shorthand rdf:datatype="http://www.w3.org/2001/XMLSchema#string">proximal_to</oboInOwl:shorthand>
- <oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">uberon</oboInOwl:hasOBONamespace>
</rdf:Description>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BSPO_0000100"/>
@@ -781218,8 +781358,8 @@
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/BSPO_0000107">
<oboInOwl:shorthand rdf:datatype="http://www.w3.org/2001/XMLSchema#string">deep_to</oboInOwl:shorthand>
<oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">uberon</oboInOwl:hasOBONamespace>
+ <oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">deep_to</oboInOwl:id>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">deep_to</rdfs:label>
- <oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">deep_to</oboInOwl:id>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">BSPO:0000107</oboInOwl:hasDbXref>
<obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Further away from the surface of the organism. Thus, the muscular layer is deep to the skin, but superficial to the intestines.</obo:IAO_0000115>
</rdf:Description>
@@ -781230,11 +781370,11 @@
<oboInOwl:hasDbXref rdf:resource="http://orcid.org/0000-0002-6601-2165"/>
</owl:Axiom>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/BSPO_0000108">
+ <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">BSPO:0000108</oboInOwl:hasDbXref>
<oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">superficial_to</oboInOwl:id>
- <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">BSPO:0000108</oboInOwl:hasDbXref>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">superficial_to</rdfs:label>
+ <oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">uberon</oboInOwl:hasOBONamespace>
<obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Near the outer surface of the organism. Thus, skin is superficial to the muscle layer.</obo:IAO_0000115>
- <oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">uberon</oboInOwl:hasOBONamespace>
<oboInOwl:shorthand rdf:datatype="http://www.w3.org/2001/XMLSchema#string">superficial_to</oboInOwl:shorthand>
</rdf:Description>
<owl:Axiom>
@@ -781246,8 +781386,8 @@
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/BSPO_0000120">
<oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">uberon</oboInOwl:hasOBONamespace>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">BSPO:0000120</oboInOwl:hasDbXref>
+ <oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">in_left_side_of</oboInOwl:id>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">in_left_side_of</rdfs:label>
- <oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">in_left_side_of</oboInOwl:id>
<rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern</rdfs:seeAlso>
<obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">X in_left_side_of Y <=> if Y is subdivided into left and right portions, X is part_of the left portion.</obo:IAO_0000115>
<oboInOwl:shorthand rdf:datatype="http://www.w3.org/2001/XMLSchema#string">in_left_side_of</oboInOwl:shorthand>
@@ -781260,11 +781400,11 @@
</owl:Axiom>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/BSPO_0000121">
<oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">uberon</oboInOwl:hasOBONamespace>
- <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">in_right_side_of</rdfs:label>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">BSPO:0000121</oboInOwl:hasDbXref>
<oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">in_right_side_of</oboInOwl:id>
+ <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">in_right_side_of</rdfs:label>
+ <obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">X in_right_side_of Y <=> if Y is subdivided into left and right portions, X is part_of the right portion.</obo:IAO_0000115>
<rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern</rdfs:seeAlso>
- <obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">X in_right_side_of Y <=> if Y is subdivided into left and right portions, X is part_of the right portion.</obo:IAO_0000115>
<oboInOwl:shorthand rdf:datatype="http://www.w3.org/2001/XMLSchema#string">in_right_side_of</oboInOwl:shorthand>
</rdf:Description>
<owl:Axiom>
@@ -781290,8 +781430,8 @@
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/BSPO_0000123">
<oboInOwl:shorthand rdf:datatype="http://www.w3.org/2001/XMLSchema#string">in_anterior_side_of</oboInOwl:shorthand>
<oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">uberon</oboInOwl:hasOBONamespace>
+ <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">in_anterior_side_of</rdfs:label>
<oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">in_anterior_side_of</oboInOwl:id>
- <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">in_anterior_side_of</rdfs:label>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">BSPO:0000123</oboInOwl:hasDbXref>
<obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">X anterior_side_of Y <=> if Y is subdivided into two anterior and posterior portions, X is part_of the anterior portion.</obo:IAO_0000115>
</rdf:Description>
@@ -781335,8 +781475,8 @@
<oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">in_lateral_side_of</oboInOwl:id>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">in_lateral_side_of</rdfs:label>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">BSPO:0000126</oboInOwl:hasDbXref>
+ <oboInOwl:shorthand rdf:datatype="http://www.w3.org/2001/XMLSchema#string">in_lateral_side_of</oboInOwl:shorthand>
<rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern</rdfs:seeAlso>
- <oboInOwl:shorthand rdf:datatype="http://www.w3.org/2001/XMLSchema#string">in_lateral_side_of</oboInOwl:shorthand>
</rdf:Description>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BSPO_0000126"/>
@@ -781360,8 +781500,8 @@
</owl:Axiom>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/BSPO_0001101">
<oboInOwl:shorthand rdf:datatype="http://www.w3.org/2001/XMLSchema#string">in_deep_part_of</oboInOwl:shorthand>
+ <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">BSPO:0001101</oboInOwl:hasDbXref>
<obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">X superficial_part_of Y <=> if Y is subdivided into two superficial and deep portions, X is part_of the deep portion.</obo:IAO_0000115>
- <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">BSPO:0001101</oboInOwl:hasDbXref>
<oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">in_deep_part_of</oboInOwl:id>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">in_deep_part_of</rdfs:label>
<oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">uberon</oboInOwl:hasOBONamespace>
@@ -781402,8 +781542,8 @@
</owl:Axiom>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/BSPO_0001108">
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">BSPO:0001108</oboInOwl:hasDbXref>
+ <oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">distalmost_part_of</oboInOwl:id>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">distalmost_part_of</rdfs:label>
- <oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">distalmost_part_of</oboInOwl:id>
<obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">X distalmost_part_of Y <=> X is part_of Y and X is adjacent_to the distal boundary of Y</obo:IAO_0000115>
<oboInOwl:shorthand rdf:datatype="http://www.w3.org/2001/XMLSchema#string">distalmost_part_of</oboInOwl:shorthand>
<oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">uberon</oboInOwl:hasOBONamespace>
@@ -781450,16 +781590,16 @@
<oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">uberon</oboInOwl:hasOBONamespace>
</rdf:Description>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/BSPO_0005001">
- <rdf...
[truncated message content] |
|
From: <cmu...@us...> - 2020-06-27 16:37:57
|
Revision: 5424
http://sourceforge.net/p/obo/svn/5424
Author: cmungall
Date: 2020-06-27 16:37:55 +0000 (Sat, 27 Jun 2020)
Log Message:
-----------
new-release
Added Paths:
-----------
uberon/releases/2020-06-05/
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <cmu...@us...> - 2020-05-08 05:54:51
|
Revision: 5423
http://sourceforge.net/p/obo/svn/5423
Author: cmungall
Date: 2020-05-08 05:54:50 +0000 (Fri, 08 May 2020)
Log Message:
-----------
new-release
Added Paths:
-----------
uberon/releases/2020-05-06/
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <cmu...@us...> - 2019-12-20 19:27:37
|
Revision: 5421
http://sourceforge.net/p/obo/svn/5421
Author: cmungall
Date: 2019-12-20 19:27:33 +0000 (Fri, 20 Dec 2019)
Log Message:
-----------
adding to release
Added Paths:
-----------
uberon/trunk/subsets/human-view.obo
uberon/trunk/subsets/human-view.owl
Added: uberon/trunk/subsets/human-view.obo
===================================================================
--- uberon/trunk/subsets/human-view.obo (rev 0)
+++ uberon/trunk/subsets/human-view.obo 2019-12-20 19:27:33 UTC (rev 5421)
@@ -0,0 +1,264089 @@
+format-version: 1.2
+data-version: uberon/releases/2019-11-21/ext.owl
+subsetdef: cumbo "CUMBO"
+subsetdef: cyclostome_subset "cyclostome structures"
+subsetdef: defined_by_cytoarchitecture "brain region defined by cyto-architecture"
+subsetdef: defined_by_ordinal_series "classes that are defined by relative position counting from first in a series of elements along an axis in an individual organism rather than by strict homology"
+subsetdef: developmental_classification "developmental_classification"
+subsetdef: dubious_grouping "Indicates that subclasses in AOs may be inappropriately linked"
+subsetdef: early_development "A class that represents an early developmental structure, like a blastocyst. This part of the ontology is undergoing review to remove inappropriate grouping classes."
+subsetdef: efo_slim "EFO slim"
+subsetdef: emapa_ehdaa2 "derived from the union of EHDAA2 and EMAPA - still to be checked"
+subsetdef: feed_aligned "subset of classes that have logical defs text defs and synonyms aligned with FEED"
+subsetdef: functional_classification "functional_classification"
+subsetdef: grouping_class "Subset consisting of classes creating for grouping purposes"
+subsetdef: homology_grouping "A grouping class that depends on an assumption of homology between subclasses"
+subsetdef: inconsistent_with_fma "classes that have some inconsistency with FMA"
+subsetdef: major_organ "somewhat fuzzy grouping for analysis purposes, currently composed of something like: liver, heart, skeletal, kidney, bladder, brain, skin, mouth, esophagus, stomach, small intestine, large intestines, trachea nose, lungs, brain, spinal cord, peripheral nerves, kidneys, ureters, bladder, urethra, gonads"
+subsetdef: metazoa_core "core classes typically found across metazoa. one purpose is to create a rough set of terms that could be used to start a new metazoan AO. Note this subset is not yet fully fleshed out"
+subsetdef: non_informative "abstract class brought in to group ontology classes but not informative"
+subsetdef: organ_slim "organs, excluding individual muscles and skeletal elements"
+subsetdef: pheno_slim "Phenotype slim"
+subsetdef: phenotype_rcn "A subset specifically created for the 2012 Phenotype RCN meeting. Includes some human-specific terms that may eventually be removed when they are adequately represented with part of relationships in FMA"
+subsetdef: uberon_slim "Uberon slim - subset that excludes obscure terms and deep compositional terms"
+subsetdef: ubprop:upper_level "abstract upper-level terms not directly useful for analysis"
+subsetdef: unverified_taxonomic_grouping "Indicates that the class encompasses classes from other AOs that have not been verified"
+subsetdef: upper_level "abstract upper-level terms not directly useful for analysis"
+subsetdef: vertebrate_core "core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO"
+synonymtypedef: ABBREVIATION "abbreviation"
+synonymtypedef: BRAIN_NAME_ABV ""
+synonymtypedef: COMPARATIVE_PREFERRED "preferred term in the context of comparative anatomy"
+synonymtypedef: DEPRECATED "A historic synonym, no longer encouraged"
+synonymtypedef: DEVELOPMENTAL "developmental term"
+synonymtypedef: DUBIOUS "dubious or contested synonym"
+synonymtypedef: HOMOLOGY "a synonym made on the basis of a possibly homologous structure in another species"
+synonymtypedef: HUMAN_PREFERRED "preferred term when talking about an instance of this class in Homo sapiens"
+synonymtypedef: INCONSISTENT "indicates that a synonym is used in an inconsistent or confusing way, typically between species"
+synonymtypedef: LATIN "latin term"
+synonymtypedef: MISSPELLING "a mis-spelling that is in common use and thus recorded"
+synonymtypedef: NON_AMNIOTE "synonym that is inappropriate for amniotes"
+synonymtypedef: NON_MAMMAL "synonym that is inappropriate for mammals"
+synonymtypedef: PENDING_REVIEW "expert consultation and attribution required"
+synonymtypedef: PLURAL "plural term"
+synonymtypedef: PLURAL "plurals"
+synonymtypedef: SENSU "taxonomic disambiguation"
+synonymtypedef: SYSTEMATIC "a systematic synonym used as the base name for design patterns"
+default-namespace: uberon
+treat-xrefs-as-equivalent: AEO
+treat-xrefs-as-equivalent: BILA
+treat-xrefs-as-equivalent: BSPO
+treat-xrefs-as-equivalent: CARO
+treat-xrefs-as-equivalent: EFO
+treat-xrefs-as-equivalent: GO
+treat-xrefs-as-equivalent: OG
+treat-xrefs-as-equivalent: VSAO
+treat-xrefs-as-is_a: VHOG
+remark: Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/TEMP>) VersionIRI(<null>))) [Axioms: 437 Logical Axioms: 0]
+remark: Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/uberon-bridge-to-bfo.owl>) VersionIRI(<null>))) [Axioms: 20 Logical Axioms: 9]
+remark: Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/uberon/chebi_import.owl>) VersionIRI(<http://purl.obolibrary.org/obo/uberon/releases/2019-06-27/chebi_import.owl>))) [Axioms: 955 Logical Axioms: 425]
+remark: Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/uberon/cl_import.owl>) VersionIRI(<http://purl.obolibrary.org/obo/uberon/releases/2019-06-27/cl_import.owl>))) [Axioms: 24933 Logical Axioms: 6321]
+remark: Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/uberon/contexts/context-human.owl>) VersionIRI(<null>))) [Axioms: 2 Logical Axioms: 2]
+remark: Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/uberon/disjoint_union_over.owl>) VersionIRI(<null>))) [Axioms: 38 Logical Axioms: 38]
+remark: Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/uberon/envo_import.owl>) VersionIRI(<http://purl.obolibrary.org/obo/uberon/releases/2013-10-21/envo_import.owl>))) [Axioms: 28 Logical Axioms: 7]
+remark: Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/uberon/ext.owl>) VersionIRI(<http://purl.obolibrary.org/obo/uberon/releases/2014-05-17/ext.owl>))) [Axioms: 2327 Logical Axioms: 1383]
+remark: Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/uberon/ext.owl>) VersionIRI(<null>))) [Axioms: 26405 Logical Axioms: 4891]
+remark: Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/uberon/go_import.owl>) VersionIRI(<http://purl.obolibrary.org/obo/uberon/releases/2019-06-27/go_import.owl>))) [Axioms: 6910 Logical Axioms: 4109]
+remark: Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/uberon/insect-anatomy.owl>) VersionIRI(<null>))) [Axioms: 2098 Logical Axioms: 650]
+remark: Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/uberon/nbo_import.owl>) VersionIRI(<http://purl.obolibrary.org/obo/uberon/releases/2013-10-21/nbo_import.owl>))) [Axioms: 30 Logical Axioms: 9]
+remark: Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/uberon/ncbitaxon_import.owl>) VersionIRI(<http://purl.obolibrary.org/obo/uberon/releases/2019-06-27/ncbitaxon_import.owl>))) [Axioms: 1637 Logical Axioms: 923]
+remark: Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/uberon/pato_import.owl>) VersionIRI(<http://purl.obolibrary.org/obo/uberon/releases/2019-06-27/pato_import.owl>))) [Axioms: 330 Logical Axioms: 110]
+remark: Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/uberon/pr_import.owl>) VersionIRI(<http://purl.obolibrary.org/obo/uberon/releases/2019-06-27/pr_import.owl>))) [Axioms: 42 Logical Axioms: 13]
+remark: Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/uberon/reflexivity_axioms.owl>) VersionIRI(<null>))) [Axioms: 2 Logical Axioms: 2]
+remark: Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/uberon/ro_import.owl>) VersionIRI(<null>))) [Axioms: 1110 Logical Axioms: 474]
+ontology: uberon/ext
+property_value: dc-contributor "Alan Ruttenberg" xsd:string
+property_value: dc-contributor "Alexander Diehl" xsd:string
+property_value: dc-contributor "Ann Maglia" xsd:string
+property_value: dc-contributor "Anna Anagnostopoulos" xsd:string
+property_value: dc-contributor "Bgee Project - http://bgee.unil.ch" xsd:string
+property_value: dc-contributor "Bill Bug" xsd:string
+property_value: dc-contributor "Brian K Hall" xsd:string
+property_value: dc-contributor "Carlo Torniai" xsd:string
+property_value: dc-contributor "Catherine Leroy" xsd:string
+property_value: dc-contributor "Ceri Van Slyke" xsd:string
+property_value: dc-contributor "Cynthia Smith" xsd:string
+property_value: dc-contributor "David Hill" xsd:string
+property_value: dc-contributor "David Osumi-Sutherland" xsd:string
+property_value: dc-contributor "Duncan Davidson" xsd:string
+property_value: dc-contributor "Frederic Bastian" xsd:string
+property_value: dc-contributor "Gene Ontology Consortium" xsd:string
+property_value: dc-contributor "George Gkoutos" xsd:string
+property_value: dc-contributor "Hilmar Lapp" xsd:string
+property_value: dc-contributor "James Balhoff" xsd:string
+property_value: dc-contributor "James Malone" xsd:string
+property_value: dc-contributor "Jonathan Bard" xsd:string
+property_value: dc-contributor "Lydie Lane" xsd:string
+property_value: dc-contributor "Marc Robinson-Rechavi" xsd:string
+property_value: dc-contributor "Mark Engelstad - https://orcid.org/0000-0001-5889-4463" xsd:string
+property_value: dc-contributor "Maryann Martone" xsd:string
+property_value: dc-contributor "neXtProt project" xsd:string
+property_value: dc-contributor "NIF Project - http://neuinfo.org/" xsd:string
+property_value: dc-contributor "Onard Mejino" xsd:string
+property_value: dc-contributor "PATO Project" xsd:string
+property_value: dc-contributor "Paul Schofield" xsd:string
+property_value: dc-contributor "Paul Sereno" xsd:string
+property_value: dc-contributor "Paula Duek Roggli" xsd:string
+property_value: dc-contributor "Paula Mabee" xsd:string
+property_value: dc-contributor "Phenoscape Project" xsd:string
+property_value: dc-contributor "Rebecca Foulger" xsd:string
+property_value: dc-contributor "Robert Druzinsky" xsd:string
+property_value: dc-contributor "Sarah Whitcher Kansa - https://orcid.org/0000-0001-7920-5321" xsd:string
+property_value: dc-contributor "Shahim Essaid" xsd:string
+property_value: dc-contributor "Suzanna Lewis" xsd:string
+property_value: dc-contributor "Terry Hayamizu" xsd:string
+property_value: dc-contributor "Terry Meehan" xsd:string
+property_value: dc-contributor "Trish Whetzel" xsd:string
+property_value: dc-contributor "Yvonne Bradford" xsd:string
+property_value: dc-creator "Alex Dececchi" xsd:string
+property_value: dc-creator "Anne Niknejad" xsd:string
+property_value: dc-creator "Aurelie Comte" xsd:string
+property_value: dc-creator "Chris Mungall - http://orcid.org/0000-0002-6601-2165 " xsd:string
+property_value: dc-creator "David Blackburn" xsd:string
+property_value: dc-creator "Erik Segerdell" xsd:string
+property_value: dc-creator "Melissa Haendel" xsd:string
+property_value: dc-creator "Nizar Ibrahim" xsd:string
+property_value: dc-creator "Wasila Dahdul" xsd:string
+property_value: dc-description "Uberon is an integrated cross-species anatomy ontology representing a variety of entities classified according to traditional anatomical criteria such as structure, function and developmental lineage. The ontology includes comprehensive relationships to taxon-specific anatomical ontologies, allowing integration of functional, phenotype and expression data." xsd:string
+property_value: dc-publisher http://uberon.org xsd:anyURI
+property_value: dc-rights http://creativecommons.org/licenses/by/3.0/
+property_value: dc-source http://braininfo.rprc.washington.edu/
+property_value: dc-source http://dbpedia.org
+property_value: dc-source http://en.wikipedia.org/wiki/
+property_value: dc-source http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-GrossAnatomy.owl
+property_value: dc-source http://palaeos.com
+property_value: dc-source http://pons.incf.org/wiki/Common_Upper_Mammalian_Brain_Ontology_%28Cumbo%29
+property_value: dc-source http://purl.obolibrary.org/obo/aao.owl
+property_value: dc-source http://purl.obolibrary.org/obo/aba.owl
+property_value: dc-source http://purl.obolibrary.org/obo/aeo.owl
+property_value: dc-source http://purl.obolibrary.org/obo/bila.owl
+property_value: dc-source http://purl.obolibrary.org/obo/bto.owl
+property_value: dc-source http://purl.obolibrary.org/obo/caro.owl
+property_value: dc-source http://purl.obolibrary.org/obo/cl.owl
+property_value: dc-source http://purl.obolibrary.org/obo/ehdaa2.owl
+property_value: dc-source http://purl.obolibrary.org/obo/emapa.owl
+property_value: dc-source http://purl.obolibrary.org/obo/fbbt.owl
+property_value: dc-source http://purl.obolibrary.org/obo/fma.owl
+property_value: dc-source http://purl.obolibrary.org/obo/go.owl
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+treat-xrefs-as-reverse-genus-differentia: WBls part_of NCBITaxon:6237
+treat-xrefs-as-reverse-genus-differentia: XAO part_of NCBITaxon:8353
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+
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+id: CHEBI:10545
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+id: CHEBI:131927
+name: dicarboxylic acids and O-substituted derivatives
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+[Term]
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+
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+name: gas molecular entity
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+
+[Term]
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+name: secondary carboxamide
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+name: 24G7 epitope
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+
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+
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+name: polypeptide
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+
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+name: phospholipid
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+is_a: CHEBI:37734 ! phosphoric ester
+
+[Term]
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+name: hyaluronic acid
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+name: carbon dioxide
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+name: protein polypeptide chain
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+name: carbohydrate
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+
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+name: peptide
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+
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+name: bilirubin IXalpha
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+relationship: has_part CHEBI:142163 ! 24G7 epitope
+
+[Term]
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+name: chitin
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+
+[Term]
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+name: glycoprotein
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+
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+name: ceramide
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+
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+
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+name: glycosaminoglycan
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+name: polysaccharide
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+
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+name: (1->4)-beta-D-glucan
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+
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+name: N-acylglucosamine
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+
+[Term]
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+name: N-acyl-hexosamine
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+
+[Term]
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+
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+
+[Term]
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+name: alkali metal atom
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+
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+name: aminoglycan
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+
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+name: anion
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+
+[Term]
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+name: bile salt
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+
+[Term]
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+name: calcium atom
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+
+[Term]
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+name: calcium molecular entity
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+
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+name: carbamoyl group
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+
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+name: carbon oxide
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+
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+name: carbonates
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+
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+name: carbonyl group
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+
+[Term]
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+name: carotenoid
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+
+[Term]
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+name: carotenol
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+
+[Term]
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+name: cerebroside
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+is_a: CHEBI:25513 ! neutral glycosphingolipid
+
+[Term]
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+name: choline ester
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+
+[Term]
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+name: cholines
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+
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+name: molecular entity
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+
+[Term]
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+name: monoatomic cation
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+
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+name: glucosamines
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+
+[Term]
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+name: glycosphingolipid
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+
+[Term]
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+name: chemical entity
+
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+
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+name: organic heterocyclic compound
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+is_a: CHEBI:33832 ! organic cyclic compound
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+
+[Term]
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+name: hexosamine
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+
+[Term]
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+name: hydrocarbon
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+
+[Term]
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+name: hydroxides
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+relationship: has_part CHEBI:43176 ! hydroxy group
+
+[Term]
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+name: oxoacid
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+
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+name: inorganic molecular entity
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+
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+name: salt
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+relationship: has_part CHEBI:22563 ! anion
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+
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+name: monoatomic ion
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+
+[Term]
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+name: organic salt
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+
+[Term]
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+name: ion
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+
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+name: isoprenoid
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+
+[Term]
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+name: linear tetrapyrrole
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+
+[Term]
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+name: metal cation
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+is_a: CHEBI:36915 ! inorganic cation
+
+[Term]
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+name: molecule
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+
+[Term]
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+name: monoatomic monocation
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+
+[Term]
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+name: neutral glycosphingolipid
+is_a: CHEBI:24402 ! glycosphingolipid
+
+[Term]
+id: CHEBI:25555
+name: nitrogen atom
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+
+[Term]
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+name: nonmetal atom
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+name: organic anion
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+name: organic cation
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+name: organic ion
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+[Term]
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+name: organic oxide
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+
+[Term]
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+name: organic phosphate
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+
+[Term]
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+name: organic sulfate
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+
+[Term]
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+name: organophosphorus compound
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+
+[Term]
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+name: oxide
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+
+[Term]
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+name: oxygen atom
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+
+[Term]
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+name: oxygen molecular entity
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+name: phosphate
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+
+[Term]
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+name: phosphoric acid derivative
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+
+[Term]
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+name: phosphorus molecular entity
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+
+[Term]
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+name: porphyrins
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+
+[Term]
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+name: quaternary nitrogen compound
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+relationship: has_part CHEBI:35267 ! quaternary ammonium ion
+
+[Term]
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+name: sodium atom
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+
+[Term]
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+name: sodium molecular entity
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+relationship: has_part CHEBI:26708 ! sodium atom
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+[Term]
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+name: sodium salt
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+is_a: CHEBI:35479 ! alkali metal salt
+relationship: has_part CHEBI:29101 ! sodium(1+)
+
+[Term]
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+name: sphingolipid
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+is_a: CHEBI:36963 ! organooxygen compound
+
+[Term]
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+name: sulfuric ester
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+
+[Term]
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+name: sulfates
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+
+[Term]
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+name: sulfur atom
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+
+[Term]
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+name: sulfur molecular entity
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+
+[Term]
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+name: terpenoid
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+
+[Term]
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+name: tetrapyrrole
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+
+[Term]
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+name: tetraterpenoid
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+
+[Term]
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+name: univalent carboacyl group
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+
+[Term]
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+name: xanthophyll
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+
+[Term]
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+name: zwitterion
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+
+[Term]
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+name: zeaxanthin
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+
+[Term]
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+name: carbon atom
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+
+[Term]
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+name: phosphorus atom
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+
+[Term]
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+name: beta-D-glucan
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+
+[Term]
+id: CHEBI:28838
+name: lutein
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+
+[Term]
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+name: amino sugar
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+
+[Term]
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+name: sodium(1+)
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+is_a: CHEBI:33504 ! alkali metal cation
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+is_a: CHEBI:60242 ! monovalent inorganic cation
+
+[Term]
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+name: calcium(2+)
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+is_a: CHEBI:39123 ! calcium cation
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+
+[Term]
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+name: monoatomic dication
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+
+[Term]
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+name: amide
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+
+[Term]
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+name: calcium carbonate
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+is_a: CHEBI:46721 ! carbonate salt
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+
+[Term]
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+name: fundamental particle
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+
+[Term]
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+[Term]
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+name: oxoacid derivative
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+
+[Term]
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+name: organic fundamental parent
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+[Term]
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+name: inorganic group
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+[Term]
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+
+[Term]
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+name: atomic nucleus
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+[Term]
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+name: nucleon
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+
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+name: primary amide
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+
+[Term]
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+
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+name: heteroorganic entity
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+[Term]
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+name: alkali metal molecular entity
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+
+[Term]
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+name: alkaline earth molecular entity
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+
+[Term]
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+name: pnictogen
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+
+[Term]
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+name: pnictogen molecular entity
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+relationship: has_part CHEBI:33300 ! pnictogen
+
+[Term]
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+
+[Term]
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+name: chalcogen molecular entity
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+
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+name: carbon group element atom
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+
+[Term]
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+name: main group element atom
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+[Term]
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+name: sulfur oxoacid derivative
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+
+[Term]
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+name: alkali metal cation
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+
+[Term]
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+name: alkaline earth cation
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+
+[Term]
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+name: metal atom
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+
+[Term]
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+name: s-block element atom
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+
+[Term]
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+name: p-block element atom
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+
+[Term]
+id: CHEBI:33563
+name: glycolipid
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+
+[Term]
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+name: carboxylic acid
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+relationship: has_part CHEBI:46883 ! carboxy group
+
+[Term]
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+name: main group molecular entity
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+
+[Term]
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+name: carbon group molecular entity
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+relationship: has_part CHEBI:33306 ! carbon group element atom
+
+[Term]
+id: CHEBI:33595
+name: cyclic compound
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+
+[Term]
+id: CHEBI:33608
+name: hydrogen molecular entity
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+relationship: has_part CHEBI:49637 ! hydrogen atom
+
+[Term]
+id: CHEBI:33635
+name: polycyclic compound
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+
+[Term]
+id: CHEBI:33655
+name: aromatic compound
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+
+[Term]
+id: CHEBI:33659
+name: organic aromatic compound
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+is_a: CHEBI:33832 ! organic cyclic compound
+
+[Term]
+id: CHEBI:33674
+name: s-block molecular entity
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+relationship: has_part CHEBI:33559 ! s-block element atom
+
+[Term]
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+name: p-block molecular entity
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+relationship: has_part CHEBI:33560 ! p-block element atom
+
+[Term]
+id: CHEBI:33692
+name: hydrides
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+is_a: CHEBI:37577 ! heteroatomic molecular entity
+
+[Term]
+id: CHEBI:33694
+name: biomacromolecule
+is_a: CHEBI:33839 ! macromolecule
+is_a: CHEBI:50860 ! organic molecular entity
+
+[Term]
+id: CHEBI:33695
+name: information biomacromolecule
+is_a: CHEBI:33694 ! biomacromolecule
+
+[Term]
+id: CHEBI:33700
+name: proteinogenic amino-acid residue
+is_a: CHEBI:33710 ! alpha-amino-acid residue
+
+[Term]
+id: CHEBI:33702
+name: polyatomic cation
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+is_a: CHEBI:36916 ! cation
+
+[Term]
+id: CHEBI:33708
+name: amino-acid residue
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+
+[Term]
+id: CHEBI:33710
+name: alpha-amino-acid residue
+is_a: CHEBI:33708 ! amino-acid residue
+
+[Term]
+id: CHEBI:33832
+name: organic cyclic compound
+is_a: CHEBI:33595 ! cyclic compound
+is_a: CHEBI:72695 ! organic molecule
+
+[Term]
+id: CHEBI:33833
+name: heteroarene
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+is_a: CHEBI:33659 ! organic aromatic compound
+
+[Term]
+id: CHEBI:33837
+name: conjugated protein
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+
+[Term]
+id: CHEBI:33839
+name: macromolecule
+is_a: CHEBI:36357 ! polyatomic entity
+
+[Term]
+id: CHEBI:35155
+name: elemental calcium
+is_a: CHEBI:22985 ! calcium molecular entity
+
+[Term]
+id: CHEBI:35156
+name: calcium salt
+is_a: CHEBI:22985 ! calcium molecular entity
+is_a: CHEBI:36364 ! alkaline earth salt
+relationship: has_part CHEBI:29108 ! calcium(2+)
+
+[Term]
+id: CHEBI:35186
+name: terpene
+is_a: CHEBI:24632 ! hydrocarbon
+is_a: CHEBI:24913 ! isoprenoid
+
+[Term]
+id: CHEBI:35191
+name: triterpene
+is_a: CHEBI:35186 ! terpene
+
+[Term]
+id: CHEBI:35267
+name: quaternary ammonium ion
+is_a: CHEBI:25697 ! organic cation
+is_a: CHEBI:35274 ! ammonium ion
+
+[Term]
+id: CHEBI:35274
+name: ammonium ion
+is_a: CHEBI:33702 ! polyatomic cation
+is_a: CHEBI:51143 ! nitrogen molecular entity
+
+[Term]
+id: CHEBI:35281
+name: onium betaine
+is_a: CHEBI:27369 ! zwitterion
+
+[Term]
+id: CHEBI:35284
+name: ammonium betaine
+is_a: CHEBI:26469 ! quaternary nitrogen compound
+is_a: CHEBI:35281 ! onium betaine
+
+[Term]
+id: CHEBI:35341
+name: steroid
+is_a: CHEBI:18059 ! lipid
+is_a: CHEBI:51958 ! organic polycyclic compound
+
+[Term]
+id: CHEBI:35352
+name: organonitrogen compound
+is_a: CHEBI:33285 ! heteroorganic entity
+is_a: CHEBI:51143 ! nitrogen molecular entity
+
+[Term]
+id: CHEBI:35406
+name: oxoanion
+is_a: CHEBI:25741 ! oxide
+is_a: CHEBI:33273 ! polyatomic anion
+
+[Term]
+id: CHEBI:35479
+name: alkali metal salt
+is_a: CHEBI:24866 ! salt
+is_a: CHEBI:33296 ! alkali metal molecular entity
+
+[Term]
+id: CHEBI:35507
+name: natural product fundamental parent
+is_a: CHEBI:33245 ! organic fundamental parent
+
+[Term]
+id: CHEBI:35604
+name: carbon oxoanion
+is_a: CHEBI:25696 ! organic anion
+is_a: CHEBI:35406 ! oxoanion
+is_a: CHEBI:36963 ! organooxygen compound
+
+[Term]
+id: CHEBI:35605
+name: carbon oxoacid
+is_a: CHEBI:24833 ! oxoacid
+is_a: CHEBI:36963 ! organooxygen compound
+
+[Term]
+id: CHEBI:35692
+name: dicarboxylic acid
+is_a: CHEBI:131927 ! dicarboxylic acids and O-substituted derivatives
+is_a: CHEBI:33575 ! carboxylic acid
+
+[Term]
+id: CHEBI:35701
+name: ester
+is_a: CHEBI:36963 ! organooxygen compound
+
+[Term]
+id: CHEBI:35722
+name: sulfated glycosaminoglycan
+is_a: CHEBI:18085 ! glycosaminoglycan
+is_a: CHEBI:35724 ! carbohydrate sulfate
+
+[Term]
+id: CHEBI:35724
+name: carbohydrate sulfate
+is_a: CHEBI:25704 ! organic sulfate
+is_a: CHEBI:26819 ! sulfuric ester
+is_a: CHEBI:63299 ! carbohydrate derivative
+
+[Term]
+id: CHEBI:35740
+name: liposaccharide
+is_a: CHEBI:18059 ! lipid
+is_a: CHEBI:63299 ! carbohydrate derivative
+
+[Term]
+id: CHEBI:35786
+name: phosphosphingolipid
+is_a: CHEBI:16247 ! phospholipid
+is_a: CHEBI:26739 ! sphingolipid
+
+[Term]
+id: CHEBI:35794
+name: tetrapyrrole fundamental parent
+is_a: CHEBI:26932 ! tetrapyrrole
+is_a: CHEBI:35507 ! natural product fundamental parent
+
+[Term]
+id: CHEBI:36078
+name: cholanoid
+is_a: CHEBI:35341 ! steroid
+
+[Term]
+id: CHEBI:36080
+name: protein
+is_a: CHEBI:33695 ! information biomacromolecule
+relationship: has_part CHEBI:16541 ! protein polypeptide chain
+
+[Term]
+id: CHEBI:36277
+name: bile acid salt
+is_a: CHEBI:24868 ! organic salt
+is_a: CHEBI:36078 ! cholanoid
+
+[Term]
+id: CHEBI:36309
+name: cyclic tetrapyrrole
+is_a: CHEBI:26932 ! tetrapyrrole
+is_a: CHEBI:47882 ! cyclic polypyrrole
+
+[Term]
+id: CHEBI:36338
+name: lepton
+is_a: CHEBI:33233 ! fundamental particle
+is_a: CHEBI:36340 ! fermion
+
+[Term]
+id: CHEBI:36339
+name: baryon
+is_a: CHEBI:36340 ! fermion
+is_a: CHEBI:36344 ! hadron
+
+[Term]
+id: CHEBI:36340
+name: fermion
+is_a: CHEBI:36342 ! subatomic particle
+
+[Term]
+id: CHEBI:36342
+name: subatomic particle
+
+[Term]
+id: CHEBI:36343
+name: composite particle
+is_a: CHEBI:36342 ! subatomic particle
+
+[Term]
+id: CHEBI:36344
+name: hadron
+is_a: CHEBI:36343 ! composite particle
+
+[Term]
+id: CHEBI:36347
+name: nuclear particle
+is_a: CHEBI:36342 ! subatomic particle
+
+[Term]
+id: CHEBI:36357
+name: polyatomic entity
+is_a: CHEBI:23367 ! molecular entity
+relationship: has_part CHEBI:24433 ! group
+
+[Term]
+id: CHEBI:36358
+name: polyatomic ion
+is_a: CHEBI:24870 ! ion
+is_a: CHEBI:36357 ! polyatomic entity
+
+[Term]
+id: CHEBI:36359
+name: phosphorus oxoacid derivative
+is_a: CHEBI:33241 ! oxoacid derivative
+is_a: CHEBI:36360 ! phosphorus oxoacids and derivatives
+
+[Term]
+id: CHEBI:36360
+name: phosphorus oxoacids and derivatives
+is_a: CHEBI:26082 ! phosphorus molecular entity
+
+[Term]
+id: CHEBI:36364
+name: alkaline earth salt
+is_a: CHEBI:24866 ! salt
+is_a: CHEBI:33299 ! alkaline earth molecular entity
+
+[Term]
+id: CHEBI:36498
+name: galactosylceramide
+is_a: CHEBI:23079 ! cerebroside
+is_a: CHEBI:5254 ! galactolipid
+is_a: CHEBI:62941 ! glycosylceramide
+
+[Term]
+id: CHEBI:36586
+name: carbonyl compound
+is_a: CHEBI:36587 ! organic oxo compound
+is_a: CHEBI:36963 ! organooxygen compound
+relationship: has_part CHEBI:23019 ! carbonyl group
+
+[Term]
+id: CHEBI:36587
+name: organic oxo compound
+is_a: CHEBI:72695 ! organic molecule
+relationship: has_part CHEBI:46629 ! oxo group
+
+[Term]
+id: CHEBI:36700
+name: phosphocholines
+is_a: CHEBI:23213 ! choline ester
+is_a: CHEBI:23217 ! cholines
+is_a: CHEBI:25703 ! organic phosphate
+is_a: CHEBI:37734 ! phosphoric ester
+
+[Term]
+id: CHEBI:36735
+name: biladienes
+is_a: CHEBI:25046 ! linear tetrapyrrole
+
+[Term]
+id: CHEBI:36914
+name: inorganic ion
+is_a: CHEBI:24835 ! inorganic molecular entity
+is_a: CHEBI:24870 ! ion
+
+[Term]
+id: CHEBI:36915
+name: inorganic cation
+is_a: CHEBI:36914 ! inorganic ion
+is_a: CHEBI:36916 ! cation
+
+[Term]
+id: CHEBI:36916
+name: cation
+is_a: CHEBI:24870 ! ion
+
+[Term]
+id: CHEBI:36962
+name: organochalcogen compound
+is_a: CHEBI:33285 ! heteroorganic entity
+is_a: CHEBI:33304 ! chalcogen molecular entity
+
+[Term]
+id: CHEBI:36963
+name: organooxygen compound
+is_a: CHEBI:25806 ! oxygen molecular entity
+is_a: CHEBI:36962 ! organochalcogen compound
+
+[Term]
+id: CHEBI:37163
+name: glucan
+is_a: CHEBI:37164 ! homopolysaccharide
+
+[Term]
+id: CHEBI:37164
+name: homopolysaccharide
+is_a: CHEBI:18154 ! polysaccharide
+
+[Term]
+id: CHEBI:37175
+name: organic hydride
+is_a: CHEBI:33692 ! hydrides
+
+[Term]
+id: CHEBI:37246
+name: elemental sodium
+is_a: CHEBI:26712 ! sodium molecular entity
+
+[Term]
+id: CHEBI:37395
+name: mucopolysaccharide
+is_a: CHEBI:18085 ! glycosaminoglycan
+
+[Term]
+id: CHEBI:37397
+name: chondroitin sulfate
+is_a: CHEBI:35722 ! sulfated glycosaminoglycan
+is_a: CHEBI:37395 ! mucopolysaccharide
+
+[Term]
+id: CHEBI:37577
+name: heteroatomic molecular entity
+is_a: CHEBI:36357 ! polyatomic entity
+
+[Term]
+id: CHEBI:37622
+name: carboxamide
+is_a: CHEBI:33256 ! primary amide
+is_a: CHEBI:35352 ! organonitrogen compound
+is_a: CHEBI:36963 ! organooxygen compound
+relationship: has_part CHEBI:23004 ! carbamoyl group
+
+[Term]
+id: CHEBI:37734
+name: phosphoric ester
+is_a: CHEBI:26079 ! phosphoric acid derivative
+is_a: CHEBI:35701 ! ester
+
+[Term]
+id: CHEBI:37826
+name: sulfuric acid derivative
+is_a: CHEBI:33424 ! sulfur oxoacid derivative
+
+[Term]
+id: CHEBI:37838
+name: carboacyl group
+is_a: CHEBI:22221 ! acyl group
+
+[Term]
+id: CHEBI:38077
+name: polypyrrole
+is_a: CHEBI:38101 ! organonitrogen heterocyclic compound
+
+[Term]
+id: CHEBI:38101
+name: organonitrogen heterocyclic compound
+is_a: CHEBI:24532 ! organic heterocyclic compound
+is_a: CHEBI:35352 ! organonitrogen compound
+
+[Term]
+id: CHEBI:38560
+name: simple protein
+is_a: CHEBI:36080 ! protein
+
+[Term]
+id: CHEBI:38700
+name: organic sodium salt
+is_a: CHEBI:24868 ! organic salt
+is_a: CHEBI:26714 ! sodium salt
+
+[Term]
+id: CHEBI:39015
+name: apolipoprotein
+is_a: CHEBI:13850 ! apoprotein
+
+[Term]
+id: CHEBI:39022
+name: inclusion compound
+is_a: CHEBI:50967 ! non-covalently-bound molecular entity
+
+[Term]
+id: CHEBI:39024
+name: clathrate compound
+is_a: CHEBI:39022 ! inclusion compound
+
+[Term]
+id: CHEBI:39123
+name: calcium cation
+is_a: CHEBI:33513 ! alkaline earth cation
+is_a: CHEBI:39124 ! calcium ion
+
+[Term]
+id: CHEBI:39124
+name: calcium ion
+is_a: CHEBI:25213 ! metal cation
+is_a: CHEBI:35155 ! elemental calcium
+
+[Term]
+id: CHEBI:41609
+name: carbonate
+is_a: CHEBI:35604 ! carbon oxoanion
+
+[Term]
+id: CHEBI:43176
+name: hydroxy group
+is_a: CHEBI:33246 ! inorganic group
+
+[Term]
+id: CHEBI:46629
+name: oxo group
+is_a: CHEBI:33246 ! inorganic group
+
+[Term]
+id: CHEBI:46662
+name: mineral
+is_a: CHEBI:59999 ! chemical substance
+
+[Term]
+id: CHEBI:46721
+name: carbonate salt
+is_a: CHEBI:23016 ! carbonates
+relationship: has_part CHEBI:41609 ! carbonate
+
+[Term]
+id: CHEBI:46723
+name: phosphate mineral
+is_a: CHEBI:46662 ! mineral
+
+[Term]
+id: CHEBI:46883
+name: carboxy group
+is_a: CHEBI:33249 ! organyl group
+
+[Term]
+id: CHEBI:47882
+name: cyclic polypyrrole
+is_a: CHEBI:38077 ! polypyrrole
+
+[Term]
+id: CHEBI:49637
+name: hydrogen atom
+is_a: CHEBI:24835 ! inorganic molecular entity
+is_a: CHEBI:25585 ! nonmetal atom
+is_a: CHEBI:33559 ! s-block element atom
+
+[Term]
+id: CHEBI:50047
+name: organic amino compound
+is_a: CHEBI:35352 ! organonitrogen compound
+is_a: CHEBI:50860 ! organic molecular entity
+
+[Term]
+id: CHEBI:50860
+name: organic molecular entity
+is_a: CHEBI:33582 ! carbon group molecular entity
+relationship: has_part CHEBI:27594 ! carbon atom
+
+[Term]
+id: CHEBI:50967
+name: non-covalently-bound molecular entity
+is_a: CHEBI:36357 ! polyatomic entity
+
+[Term]
+id: CHEBI:51143
+name: nitrogen molecular entity
+is_a: CHEBI:33302 ! pnictogen molecular entity
+relationship: has_part CHEBI:25555 ! nitrogen atom
+
+[Term]
+id: CHEBI:51151
+name: dipolar compound
+is_a: CHEBI:72695 ! organic molecule
+
+[Term]
+id: CHEBI:51422
+name: organodiyl group
+is_a: CHEBI:51446 ! organic divalent group
+
+[Term]
+id: CHEBI:51446
+name: organic divalent group
+is_a: CHEBI:33247 ! organic group
+
+[Term]
+id: CHEBI:51447
+name: organic univalent group
+is_a: CHEBI:33247 ! organic group
+
+[Term]
+id: CHEBI:51958
+name: organic polycyclic compound
+is_a: CHEBI:33635 ! polycyclic compound
+is_a: CHEBI:33832 ! organic cyclic compound
+
+[Term]
+id: CHEBI:52254
+name: apatite
+is_a: CHEBI:46723 ! phosphate mineral
+
+[Term]
+id: CHEBI:52255
+name: hydroxylapatite
+is_a: CHEBI:52254 ! apatite
+
+[Term]
+id: CHEBI:5254
+name: galactolipid
+is_a: CHEBI:33563 ! glycolipid
+
+[Term]
+id: CHEBI:5686
+name: heterocyclic compound
+is_a: CHEBI:33595 ! cyclic compound
+
+[Term]
+id: CHEBI:59999
+name: chemical substance
+is_a: CHEBI:24431 ! chemical entity
+
+[Term]
+id: CHEBI:60240
+name: divalent metal cation
+is_a: CHEBI:25213 ! metal cation
+is_a: CHEBI:64641 ! divalent inorganic cation
+
+[Term]
+id: CHEBI:60242
+name: monovalent inorganic cation
+is_a: CHEBI:36915 ! inorganic cation
+
+[Term]
+id: CHEBI:60924
+name: keratan sulfate
+is_a: CHEBI:35722 ! sulfated glycosaminoglycan
+is_a: CHEBI:37395 ! mucopolysaccharide
+
+[Term]
+id: CHEBI:60926
+name: amino monosaccharide
+is_a: CHEBI:28963 ! amino sugar
+
+[Term]
+id: CHEBI:62941
+name: glycosylceramide
+is_a: CHEBI:17761 ! ceramide
+is_a: CHEBI:24402 ! glycosphingolipid
+
+[Term]
+id: CHEBI:63299
+name: carbohydrate derivative
+is_a: CHEBI:78616 ! carbohydrates and carbohydrate derivatives
+
+[Term]
+id: CHEBI:64583
+name: sphingomyelin
+is_a: CHEBI:140325 ! secondary carboxamide
+is_a: CHEBI:35284 ! ammonium betaine
+is_a: CHEBI:35786 ! phosphosphingolipid
+is_a: CHEBI:36700 ! phosphocholines
+
+[Term]
+id: CHEBI:64641
+name: divalent inorganic cation
+is_a: CHEBI:36915 ! inorganic cation
+
+[Term]
+id: CHEBI:64708
+name: one-carbon compound
+is_a: CHEBI:50860 ! organic molecular entity
+
+[Term]
+id: CHEBI:64709
+name: organic acid
+is_a: CHEBI:50860 ! organic molecular entity
+
+[Term]
+id: CHEBI:6495
+name: lipoprotein
+is_a: CHEBI:33837 ! conjugated protein
+is_a: CHEBI:39024 ! clathrate compound
+relationship: has_part CHEBI:39015 ! apolipoprotein
+
+[Term]
+id: CHEBI:65212
+name: polysaccharide derivative
+is_a: CHEBI:33694 ! biomacromolecule
+is_a: CHEBI:63299 ! carbohydrate derivative
+
+[Term]
+id: CHEBI:72695
+name: organic molecule
+is_a: CHEBI:25367 ! molecule
+is_a: CHEBI:50860 ! organic molecular entity
+
+[Term]
+id: CHEBI:72813
+name: exopolysaccharide
+is_a: CHEBI:33694 ! biomacromolecule
+
+[Term]
+id: CHEBI:78616
+name: carbohydrates and carbohydrate derivatives
+is_a: CHEBI:36963 ! organooxygen compound
+
+[Term]
+id: CHEBI:8337
+name: porphyrin
+is_a: CHEBI:26214 ! porphyrins
+is_a: CHEBI:35794 ! tetrapyrrole fundamental parent
+
+[Term]
+id: CL:0000000
+name: cell
+namespace: cell
+def: "A material entity of anatomical origin (part of or deriving from an organism) that has as its parts a maximally connected cell compartment surrounded by a plasma membrane." []
+comment: The definition of cell is intended to represent all cells, and thus a cell is defined as a material entity and not an anatomical structure, which implies that it is part of an organism (or the entirety of one).
+subset: ubprop:upper_level
+xref: CALOHA:TS-2035
+xref: FMA:68646
+xref: GO:0005623
+xref: KUPO:0000002
+xref: VHOG:0001533
+xref: WBbt:0004017
+xref: XAO:0003012
+is_a: GO:0005623 ! cell
+property_value: IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
+
+[Term]
+id: CL:0000001
+name: primary cultured cell
+namespace: cell
+def: "A cultured cell that is freshly isolated from a organismal source, or derives in culture from such a cell prior to the culture being passaged." []
+comment: Covers cells actively being cultured or stored in a quiescent state for future use.
+synonym: "primary cell culture cell" EXACT []
+synonym: "primary cell line cell" RELATED []
+synonym: "unpassaged cultured cell" EXACT []
+xref: BTO:0002290
+is_a: CL:0000010 ! cultured cell
+
+[Term]
+id: CL:0000002
+name: obsolete immortal cell line cell
+namespace: cell
+def: "OBSOLETE: A cell line cell that is expected to be capable of an unlimited number of divisions, and is thus able to support indefinite growth/propagation in vitro as part of a immortal cell line." []
+comment: Obsoleted in July 2013 and replaced by the CLO 'immortal cell line cell' class, as a result of CLO-OBI-CL alignment efforts.\n\nCovers cells actively being cultured or stored in a quiescent state for future use.
+synonym: "continuous cell line cell" EXACT []
+synonym: "permanent cell line cell" EXACT []
+is_obsolete: true
+replaced_by: CLO:0000019
+
+[Term]
+id: CL:0000003
+name: native cell
+namespace: cell
+def: "A cell that is found in a natural setting, which includes multicellular organism cells 'in vivo' (i.e. part of an organism), and unicellular organisms 'in environment' (i.e. part of a natural environment)." []
+comment: To accommodate unicellular organisms better, 'cell in vivo' has been re-labeled 'native cell' to better represent its intended meaning - that is, that it is a cell in the context of a multicellular organism or in a natural environment. 'Native' is intended to contrast with 'in vitro', which refers to cells or other biological entities that have been intentionally placed in a controlled, non-natural setting for the purpose of study or manipulation. (MAH 1.12.12).
+subset: ubprop:upper_level
+synonym: "cell in vivo" NARROW []
+xref: CARO:0000013
+is_a: CL:0000000 ! cell
+is_a: GO:0005623 ! cell
+
+[Term]
+id: CL:0000004
+name: obsolete cell by organism
+namespace: cell
+def: "OBSOLETE: A classification of cells by the organisms within which they are contained." []
+comment: This term was made obsolete because there is no difference in meaning between it and 'cell', as any cell can be classified by its species. If you have used this term in annotation, please replace it with cell (CL:0000000), native cell (CL:0000003), or cell in vitro (CL:0001034) as appropriate.
+is_obsolete: true
+consider: CL:0000000
+consider: CL:0000003
+consider: CL:0001034
+
+[Term]
+id: CL:0000005
+name: fibroblast neural crest derived
+namespace: cell
+is_a: CL:0000057 ! fibroblast
+intersection_of: CL:0000057 ! fibroblast
+intersection_of: develops_from CL:0000333 ! migratory neural crest cell
+relationship: develops_from CL:0000008 ! migratory cranial neural crest cell
+
+[Term]
+id: CL:0000006
+name: neuronal receptor cell
+namespace: cell
+synonym: "neuronal receptor cell (sensu Animalia)" EXACT []
+is_a: CL:0000101 ! sensory neuron
+is_a: CL:0000197 ! receptor cell
+intersection_of: CL:0000197 ! receptor cell
+intersection_of: CL:0000540 ! neuron
+intersection_of: capable_of GO:0050906 ! detection of stimulus involved in sensory perception
+
+[Term]
+id: CL:0000007
+name: early embryonic cell
+namespace: cell
+def: "A cell found in the embryo before the formation of all the gem layers is complete." []
+is_a: CL:0002321 ! embryonic cell
+
+[Term]
+id: CL:0000008
+name: migratory cranial neural crest cell
+namespace: cell
+is_a: CL:0000333 ! migratory neural crest cell
+
+[Term]
+id: CL:0000009
+name: obsolete fusiform initial
+namespace: cell
+alt_id: CL:0000274
+def: "Obsolete. Use PO:0000079 from Plant Ontology instead. An elongated cell with approximately wedge-shaped ends, found in the vascular cambium, which gives rise to the elements of the axial system in the secondary vascular tissues." []
+comment: replaced_by: PO:0000079
+synonym: "xylem initial" RELATED []
+synonym: "xylem mother cell" RELATED []
+is_obsolete: true
+
+[Term]
+id: CL:0000010
+name: cultured cell
+namespace: cell
+def: "A cell in vitro that is or has been maintained or propagated as part of a cell culture." []
+comment: Note that this class was re-labeled to 'cultured cell' instead of 'cell line cell', as it intent was clarified to cover any cultured cells of multicellular and unicellular organisms. This includes cells actively being cultured, or cells that have been cultured but are stored in a quiescent state for future use. In having been cultured, cells must establish homeostasis and often replicate in a foreign environment. Accomodation of this stress initiates a selection of cells fit for such challenges, wherein necessary adaptive biochemical and.or genetic changes can occur. These changes can set them apart from the in vivo cells from which they derive, and such changes will typically accumulate and change over increasing time in culture.
+is_a: CL:0000578 ! experimentally modified cell in vitro
+
+[Term]
+id: CL:0000011
+name: migratory trunk neural crest cell
+namespace: cell
+is_a: CL:0000333 ! migratory neural crest cell
+
+[Term]
+id: CL:0000012
+name: obsolete cell by class
+namespace: cell
+comment: This term was made obsolete because there is no difference in meaning between it and 'cell', as any cell can be classified. If you have used this term in annotation, please replace it with cell (CL:0000000), native cell (CL:0000003), or cell in vitro (CL:0001034) as appropriate.
+is_obsolete: true
+consider: CL:0000000
+consider: CL:0000003
+consider: CL:0001034
+
+[Term]
+id: CL:0000013
+name: obsolete dentine secreting cell
+namespace: cell
+is_obsolete: true
+consider: CL:0000140
+
+[Term]
+id: CL:0000014
+name: germ line stem cell
+namespace: cell
+synonym: "germline stem cell" EXACT []
+is_a: CL:0000034 ! stem cell
+is_a: CL:0000039 ! germ line cell
+intersection_of: CL:0000039 ! germ line cell
+intersection_of: capable_of GO:0017145 ! stem cell division
+
+[Term]
+id: CL:0000015
+name: male germ cell
+namespace: cell
+xref: FMA:72290
+xref: MA:0002765
+xref: ncithesaurus:Spermatogenic_Cell
+xref: VHOG:0001531
+is_a: CL:0000586 ! germ cell
+intersection_of: CL:0000586 ! germ cell
+intersection_of: capable_of GO:0007283 ! spermatogenesis
+relationship: capable_of GO:0007283 ! spermatogenesis
+
+[Term]
+id: CL:0000016
+name: male germ line stem cell
+namespace: cell
+is_a: CL:0000014 ! germ line stem cell
+is_a: CL:0000015 ! male germ cell
+
+[Term]
+id: CL:0000017
+name: spermatocyte
+namespace: cell
+def: "A male germ cell that develops from spermatogonia. The euploid primary spermatocytes undergo meiosis and give rise to the haploid secondary spermatocytes which in turn give rise to spermatids." []
+xref: BTO:0001275
+xref: CALOHA:TS-0951
+xref: EMAPA:31484
+xref: FBbt:00004936
+xref: FMA:84049
+xref: WBbt:0006799
+is_a: CL:0000015 ! male germ cell
+relationship: develops_from CL:0000020 ! spermatogonium
+
+[Term]
+id: CL:0000018
+name: spermatid
+namespace: cell
+def: "A male germ cell that develops from the haploid secondary spermatocytes. Without further division, spermatids undergo structural changes and give rise to spermatozoa." []
+synonym: "nematoblast" EXACT []
+xref: BTO:0001274
+xref: CALOHA:TS-0950
+xref: EMAPA:31486
+xref: FBbt:00004942
+xref: FMA:72294
+xref: WBbt:0006800
+is_a: CL:0000015 ! male germ cell
+is_a: CL:0000413 ! haploid cell
+relationship: develops_from CL:0000657 ! secondary spermatocyte
+
+[Term]
+id: CL:0000019
+name: sperm
+namespace: cell
+def: "A mature male germ cell that develops from a spermatid." []
+synonym: "sperm cell" EXACT []
+synonym: "spermatozoid" EXACT []
+synonym: "spermatozoon" EXACT []
+xref: BTO:0001277
+xref: BTO:0002046
+xref: CALOHA:TS-0949
+xref: FBbt:00004954
+xref: FMA:67338
+xref: WBbt:0006798
+is_a: CL:0000064 ! ciliated cell
+is_a: CL:0000219 ! motile cell
+is_a: CL:0000408 ! male gamete
+intersection_of: CL:0000408 ! male gamete
+intersection_of: capable_of GO:0030317 ! flagellated sperm motility
+intersection_of: capable_of GO:0048240 ! sperm capacitation
+relationship: capable_of GO:0030317 ! flagellated sperm motility
+relationship: capable_of GO:0048240 ! sperm capacitation
+relationship: develops_from CL:0000018 ! spermatid
+
+[Term]
+id: CL:0000020
+name: spermatogonium
+namespace: cell
+def: "An euploid male germ cell of an early stage of spermatogenesis." []
+xref: BTO:0000958
+xref: CALOHA:TS-2193
+xref: EMAPA:31482
+xref: FBbt:00004935
+xref: FMA:72291
+is_a: CL:0000015 ! male germ cell
+
+[Term]
+id: CL:0000021
+name: female germ cell
+namespace: cell
+def: "Female germ cell is a germ cell that supports female gamete production." []
+xref: MA:0000388
+xref: ncithesaurus:Egg
+xref: VHOG:0001530
+is_a: CL:0000586 ! germ cell
+intersection_of: CL:0000586 ! germ cell
+intersection_of: capable_of GO:0048477 ! oogenesis
+relationship: capable_of GO:0048477 ! oogenesis
+
+[Term]
+id: CL:0000022
+name: female germ line stem cell
+namespace: cell
+is_a: CL:0000014 ! germ line stem cell
+is_a: CL:0000021 ! female germ cell
+intersection_of: CL:0000021 ! female germ cell
+intersection_of: capable_of GO:0017145 ! stem cell division
+
+[Term]
+id: CL:0000023
+name: oocyte
+namespace: cell
+def: "A female germ cell that has entered meiosis." []
+synonym: "oogonium" RELATED []
+xref: BTO:0000964
+xref: CALOHA:TS-0711
+xref: FBbt:00004886
+xref: FMA:18644
+xref: WBbt:0006797
+is_a: CL:0000021 ! female germ cell
+
+[Term]
+id: CL:0000024
+name: oogonial cell
+namespace: cell
+def:...
[truncated message content] |
|
From: <cmu...@us...> - 2019-12-11 21:20:24
|
Revision: 5420
http://sourceforge.net/p/obo/svn/5420
Author: cmungall
Date: 2019-12-11 21:20:22 +0000 (Wed, 11 Dec 2019)
Log Message:
-----------
new-release
Added Paths:
-----------
uberon/releases/2019-11-22/
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <cmu...@us...> - 2019-12-11 14:33:04
|
Revision: 5419
http://sourceforge.net/p/obo/svn/5419
Author: cmungall
Date: 2019-12-11 14:32:14 +0000 (Wed, 11 Dec 2019)
Log Message:
-----------
new release
Modified Paths:
--------------
uberon/trunk/basic.obo
uberon/trunk/basic.owl
uberon/trunk/bridge/uberon-bridge-to-aao.obo
uberon/trunk/bridge/uberon-bridge-to-aao.owl
uberon/trunk/bridge/uberon-bridge-to-aeo.obo
uberon/trunk/bridge/uberon-bridge-to-aeo.owl
uberon/trunk/bridge/uberon-bridge-to-bila.obo
uberon/trunk/bridge/uberon-bridge-to-bila.owl
uberon/trunk/bridge/uberon-bridge-to-caro.obo
uberon/trunk/bridge/uberon-bridge-to-caro.owl
uberon/trunk/bridge/uberon-bridge-to-dhba.obo
uberon/trunk/bridge/uberon-bridge-to-dhba.owl
uberon/trunk/bridge/uberon-bridge-to-dmba.obo
uberon/trunk/bridge/uberon-bridge-to-dmba.owl
uberon/trunk/bridge/uberon-bridge-to-efo.obo
uberon/trunk/bridge/uberon-bridge-to-efo.owl
uberon/trunk/bridge/uberon-bridge-to-ehdaa.obo
uberon/trunk/bridge/uberon-bridge-to-ehdaa.owl
uberon/trunk/bridge/uberon-bridge-to-ehdaa2.obo
uberon/trunk/bridge/uberon-bridge-to-ehdaa2.owl
uberon/trunk/bridge/uberon-bridge-to-emapa.obo
uberon/trunk/bridge/uberon-bridge-to-emapa.owl
uberon/trunk/bridge/uberon-bridge-to-fbbt.obo
uberon/trunk/bridge/uberon-bridge-to-fbbt.owl
uberon/trunk/bridge/uberon-bridge-to-fbdv.obo
uberon/trunk/bridge/uberon-bridge-to-fbdv.owl
uberon/trunk/bridge/uberon-bridge-to-fma.obo
uberon/trunk/bridge/uberon-bridge-to-fma.owl
uberon/trunk/bridge/uberon-bridge-to-go.obo
uberon/trunk/bridge/uberon-bridge-to-go.owl
uberon/trunk/bridge/uberon-bridge-to-hao.obo
uberon/trunk/bridge/uberon-bridge-to-hao.owl
uberon/trunk/bridge/uberon-bridge-to-hba.obo
uberon/trunk/bridge/uberon-bridge-to-hba.owl
uberon/trunk/bridge/uberon-bridge-to-ma.obo
uberon/trunk/bridge/uberon-bridge-to-ma.owl
uberon/trunk/bridge/uberon-bridge-to-mba.obo
uberon/trunk/bridge/uberon-bridge-to-mba.owl
uberon/trunk/bridge/uberon-bridge-to-mfo.obo
uberon/trunk/bridge/uberon-bridge-to-mfo.owl
uberon/trunk/bridge/uberon-bridge-to-nifstd.obo
uberon/trunk/bridge/uberon-bridge-to-nifstd.owl
uberon/trunk/bridge/uberon-bridge-to-og.obo
uberon/trunk/bridge/uberon-bridge-to-og.owl
uberon/trunk/bridge/uberon-bridge-to-pba.obo
uberon/trunk/bridge/uberon-bridge-to-pba.owl
uberon/trunk/bridge/uberon-bridge-to-sctid.obo
uberon/trunk/bridge/uberon-bridge-to-sctid.owl
uberon/trunk/bridge/uberon-bridge-to-spd.obo
uberon/trunk/bridge/uberon-bridge-to-spd.owl
uberon/trunk/bridge/uberon-bridge-to-tads.obo
uberon/trunk/bridge/uberon-bridge-to-tads.owl
uberon/trunk/bridge/uberon-bridge-to-tao.obo
uberon/trunk/bridge/uberon-bridge-to-tao.owl
uberon/trunk/bridge/uberon-bridge-to-tgma.obo
uberon/trunk/bridge/uberon-bridge-to-tgma.owl
uberon/trunk/bridge/uberon-bridge-to-vsao.obo
uberon/trunk/bridge/uberon-bridge-to-vsao.owl
uberon/trunk/bridge/uberon-bridge-to-wbbt.obo
uberon/trunk/bridge/uberon-bridge-to-wbbt.owl
uberon/trunk/bridge/uberon-bridge-to-wbls.obo
uberon/trunk/bridge/uberon-bridge-to-wbls.owl
uberon/trunk/bridge/uberon-bridge-to-xao.obo
uberon/trunk/bridge/uberon-bridge-to-xao.owl
uberon/trunk/bridge/uberon-bridge-to-zfa.obo
uberon/trunk/bridge/uberon-bridge-to-zfa.owl
uberon/trunk/bridge/uberon-bridge-to-zfs.obo
uberon/trunk/bridge/uberon-bridge-to-zfs.owl
uberon/trunk/chebi_import.owl
uberon/trunk/cl_import.owl
uberon/trunk/composite-metazoan-basic.obo
uberon/trunk/composite-metazoan.obo
uberon/trunk/composite-metazoan.owl
uberon/trunk/composite-vertebrate.obo
uberon/trunk/composite-vertebrate.owl
uberon/trunk/core.obo
uberon/trunk/core.owl
uberon/trunk/ext.obo
uberon/trunk/ext.owl
uberon/trunk/go_import.owl
uberon/trunk/merged.obo
uberon/trunk/merged.owl
uberon/trunk/ncbitaxon_import.owl
uberon/trunk/pato_import.owl
uberon/trunk/pr_import.owl
uberon/trunk/reports/stages-human-report.tsv
uberon/trunk/reports/stages-metazoan-report.tsv
uberon/trunk/reports/stages-mouse-report.tsv
uberon/trunk/reports/stages-xenopus-report.tsv
uberon/trunk/ro_import.owl
uberon/trunk/subsets/amniote-basic.obo
uberon/trunk/subsets/amniote-basic.owl
uberon/trunk/subsets/appendicular-minimal.obo
uberon/trunk/subsets/circulatory-minimal.obo
uberon/trunk/subsets/cranial-minimal.obo
uberon/trunk/subsets/cumbo.owl
uberon/trunk/subsets/digestive-minimal.obo
uberon/trunk/subsets/efo-slim.obo
uberon/trunk/subsets/efo-slim.owl
uberon/trunk/subsets/euarchontoglires-basic.obo
uberon/trunk/subsets/euarchontoglires-basic.owl
uberon/trunk/subsets/excretory-minimal.obo
uberon/trunk/subsets/immune-minimal.obo
uberon/trunk/subsets/life-stages-composite.obo
uberon/trunk/subsets/mouse-view.owl
uberon/trunk/subsets/musculoskeletal-minimal.obo
uberon/trunk/subsets/nervous-minimal.obo
uberon/trunk/subsets/pulmonary-minimal.obo
uberon/trunk/subsets/reproductive-minimal.obo
uberon/trunk/subsets/sensory-minimal.obo
uberon/trunk/uberon-base.owl
uberon/trunk/uberon.obo
uberon/trunk/uberon.owl
Modified: uberon/trunk/basic.obo
===================================================================
--- uberon/trunk/basic.obo 2019-07-07 21:31:10 UTC (rev 5418)
+++ uberon/trunk/basic.obo 2019-12-11 14:32:14 UTC (rev 5419)
@@ -1,5 +1,5 @@
format-version: 1.2
-data-version: uberon/releases/2019-06-27/basic.owl
+data-version: uberon/releases/2019-11-22/basic.owl
subsetdef: cumbo "CUMBO"
subsetdef: cyclostome_subset "cyclostome structures"
subsetdef: defined_by_cytoarchitecture "brain region defined by cyto-architecture"
@@ -55,7 +55,7 @@
remark: Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/TEMP>) VersionIRI(<null>))) [Axioms: 437 Logical Axioms: 0]
remark: Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/uberon-bridge-to-bfo.owl>) VersionIRI(<null>))) [Axioms: 20 Logical Axioms: 9]
remark: Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/uberon/disjoint_union_over.owl>) VersionIRI(<null>))) [Axioms: 38 Logical Axioms: 38]
-remark: Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/uberon/ext.owl>) VersionIRI(<null>))) [Axioms: 26416 Logical Axioms: 4887]
+remark: Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/uberon/ext.owl>) VersionIRI(<null>))) [Axioms: 26405 Logical Axioms: 4891]
remark: Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/uberon/insect-anatomy.owl>) VersionIRI(<null>))) [Axioms: 2098 Logical Axioms: 650]
remark: Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/uberon/reflexivity_axioms.owl>) VersionIRI(<null>))) [Axioms: 2 Logical Axioms: 2]
ontology: uberon/basic
@@ -4485,7 +4485,6 @@
xref: MESH:A08.186.211.577
xref: NCIT:C94541
xref: OpenCyc:Mx4rwAeba5wpEbGdrcN5Y29ycA
-xref: UBERON:0000349
xref: UMLS:C0023715 {source="ncithesaurus:Limbic_System"}
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0011216 ! organ system subdivision
@@ -30284,8 +30283,8 @@
def: "Ganglion containing neurons that receive innervation from parasympathetic neurons in the central nervous system and subserves parasympathetic functions through innervation of smooth muscle, cardiac muscle and glands." [NLXANAT:100303]
subset: pheno_slim
subset: uberon_slim
+synonym: "ganglion parasympathicum" RELATED [BTO:0001256]
synonym: "ganglion parasympathicum" RELATED LATIN [http://en.wikipedia.org/wiki/Parasympathetic_ganglion]
-synonym: "ganglion parasympathicum" RELATED [BTO:0001256]
xref: BTO:0001256
xref: EHDAA2:0001400
xref: EMAPA:32813
@@ -30420,8 +30419,8 @@
def: "An arrangement of nerve fibers, running from the spine where it proceeds through the neck then the axilla and into the arm where it innervates skin and muscle. [WP,modified]." [http://en.wikipedia.org/wiki/Brachial_plexus, UBERON:cjm]
subset: uberon_slim
synonym: "brachial plexus" EXACT [MA:0001180]
+synonym: "plexus brachialis" RELATED LATIN [http://en.wikipedia.org/wiki/Brachial_plexus]
synonym: "plexus brachialis" RELATED [http://en.wikipedia.org/wiki/Brachial_plexus]
-synonym: "plexus brachialis" RELATED LATIN [http://en.wikipedia.org/wiki/Brachial_plexus]
xref: Brachial:plexus
xref: EHDAA2:0000180
xref: EHDAA:3782
@@ -30943,7 +30942,6 @@
xref: NCIT:C12220
xref: OpenCyc:Mx4rvVi4U5wpEbGdrcN5Y29ycA
xref: TAO:0007006
-xref: UBERON:0001833
xref: UMLS:C0023759 {source="ncithesaurus:Lip"}
xref: VHOG:0000677
xref: ZFA:0007006
@@ -32514,7 +32512,6 @@
xref: MESH:D002831
xref: NCIT:C12694
xref: TAO:0001443
-xref: UBERON:0001886
xref: UMLS:C0008524 {source="ncithesaurus:Choroid_Plexus"}
xref: VHOG:0001377
xref: ZFA:0001443
@@ -39173,7 +39170,6 @@
xref: MESH:D005552
xref: MIAA:0000394
xref: NCIT:C12671
-xref: UBERON:0002102
xref: UMLS:C1140618 {source="ncithesaurus:Upper_Extremity"}
xref: VHOG:0000338
xref: VSAO:0000148
@@ -43734,8 +43730,8 @@
xref: FMA:77624
xref: GAID:633
xref: HBA:9303
+xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=279
xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=279 {source="BIRNLEX:1137"}
-xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=279
xref: http://linkedlifedata.com/resource/umls/id/C0028936
xref: http://www.snomedbrowser.com/Codes/Details/279394006
xref: MA:0000194
@@ -51694,8 +51690,8 @@
xref: EMAPA:37921 {source="MA:th"}
xref: FMA:72405
xref: HBA:9086
+xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=472
xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=472 {source="BIRNLEX:1037"}
-xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=472
xref: http://en.wikipedia.org/wiki/Olivary_pretectal_nucleus
xref: http://linkedlifedata.com/resource/umls/id/C0175359
xref: MBA:706
@@ -62042,8 +62038,8 @@
synonym: "lateral part of substantia nigra" EXACT [FMA:76844]
synonym: "pars lateralis" EXACT [BIRNLEX:866]
synonym: "pars lateralis substantiae nigrae" EXACT LATIN [FMA:76844, FMA:TA]
+synonym: "substantia nigra lateral part" RELATED [BAMS:SNl]
synonym: "substantia nigra lateral part" RELATED [BAMS:SNL]
-synonym: "substantia nigra lateral part" RELATED [BAMS:SNl]
synonym: "substantia nigra, lateral division" RELATED [BAMS:SNL]
synonym: "substantia nigra, lateral part" EXACT [ABA:SNI]
synonym: "substantia nigra, pars lateralis" RELATED [BAMS:SNL]
@@ -77265,7 +77261,6 @@
xref: TADS:0000321
xref: TGMA:0001856
is_a: UBERON:0000062 ! organ
-is_a: UBERON:0001013 ! adipose tissue
[Term]
id: UBERON:0003918
@@ -98692,8 +98687,8 @@
synonym: "inferior glossopharyngeal ganglion" EXACT [FMA:53475]
synonym: "inferior glossopharyngeal ganglion of the glossopharyngeal (IX) nerve" EXACT [MP:0001084]
synonym: "ninth cranial nerve inferior ganglion" EXACT [FMA:53475]
+synonym: "petrosal ganglion" RELATED [MP:0001084]
synonym: "petrosal ganglion" RELATED [http://www.merriam-webster.com/medical/petrosal%20ganglion, MP:0001084]
-synonym: "petrosal ganglion" RELATED [MP:0001084]
synonym: "petrous ganglion" RELATED [http://en.wikipedia.org/wiki/File\:Gray791.png, http://en.wikipedia.org/wiki/Inferior_ganglion_of_glossopharyngeal_nerve, http://www.merriam-webster.com/medical/petrous%20ganglion]
xref: EHDAA2:0000711
xref: EMAPA:17153
@@ -107376,8 +107371,8 @@
xref: BIRNLEX:1582
xref: BIRNLEX:1774
xref: FMA:68638
+xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=95
xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=95 {source="BIRNLEX:1582"}
-xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=95
xref: http://linkedlifedata.com/resource/umls/id/C1272502
xref: UMLS:C1272502 {source="BIRNLEX:1774"}
is_a: UBERON:0013529 {source="NIFSTD"} ! Brodmann area
@@ -107448,8 +107443,8 @@
xref: BAMS:BNC
xref: BIRNLEX:1629
xref: EV:0100182
+xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=224
xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=224 {source="BIRNLEX:1629"}
-xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=224
xref: http://linkedlifedata.com/resource/umls/id/C0004781
xref: UMLS:C0004781 {source="BIRNLEX:1629"}
is_a: UBERON:0007245 ! nuclear complex of neuraxis
@@ -107764,8 +107759,8 @@
xref: BAMS:11nf
xref: BIRNLEX:916
xref: FMA:72626
+xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=792 {source="BIRNLEX:916"}
xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=792
-xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=792 {source="BIRNLEX:916"}
xref: http://linkedlifedata.com/resource/umls/id/C0175549
xref: UMLS:C0175549 {source="BIRNLEX:916"}
is_a: UBERON:0000122 ! neuron projection bundle
@@ -121143,8 +121138,8 @@
id: UBERON:0007710
name: intermediate nucleus of lateral lemniscus
synonym: "intermediate nucleus of the lateral lemniscus" RELATED [BAMS:ILL]
+synonym: "nucleus of the lateral lemniscus horizontal part" RELATED [BAMS:NLLh]
synonym: "nucleus of the lateral lemniscus horizontal part" RELATED [BAMS:Nllh]
-synonym: "nucleus of the lateral lemniscus horizontal part" RELATED [BAMS:NLLh]
synonym: "nucleus of the lateral lemniscus, horizontal part" EXACT [ABA:NLLh]
xref: BAMS:ILL
xref: BAMS:NLLh
@@ -144078,7 +144073,10 @@
[Term]
id: UBERON:0011510
name: cloacal bursa
+def: "An evagination of the cloaca. In Testudines these are hypothesized to function in different physiological roles, primarily in respiration." [http://www.ncbi.nlm.nih.gov/pubmed/11479904, UBERON:cjm]
+comment: Taxon notes: in cryptodires, bursae apparently function primarily in buoyancy control and secondarily in ion transport and nesting, but several pleurodires have been shown recently to use them in aquatic respiration.[PMID:11479904]
is_a: UBERON:0000063 ! organ subunit
+relationship: depicted_by https://upload.wikimedia.org/wikipedia/commons/d/d8/Turtle_Cloacal_Respiration.png
relationship: part_of UBERON:0000162 ! cloaca
[Term]
@@ -154044,8 +154042,8 @@
xref: Brodmann_area:10
xref: DHBA:146034836
xref: FMA:68607
+xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=76
xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=76 {source="BIRNLEX:1741"}
-xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=76
xref: http://linkedlifedata.com/resource/umls/id/C1272532
xref: UMLS:C1272532 {source="BIRNLEX:1741"}
is_a: UBERON:0013529 {source="NIFSTD"} ! Brodmann area
@@ -163227,7 +163225,6 @@
xref: SPD:0000343
is_a: UBERON:0000957 ! lamina
relationship: part_of UBERON:0000970 ! eye
-relationship: present_in_taxon NCBITaxon:72037
[Term]
id: UBERON:0015170
@@ -168846,8 +168843,8 @@
xref: BIRNLEX:1096
xref: DHBA:10642
xref: FMA:61891
+xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=282 {source="BIRNLEX:1096"}
xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=282
-xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=282 {source="BIRNLEX:1096"}
xref: http://en.wikipedia.org/wiki/Anterior_perforated_substance
xref: http://linkedlifedata.com/resource/umls/id/C0162436
xref: http://www.snomedbrowser.com/Codes/Details/369108006
@@ -174148,8 +174145,8 @@
[Term]
id: UBERON:0022647
name: obsolete predominantly gray regional part of epithalamus
+synonym: "predominantly gray regional part of epithalamus" EXACT [BIRNLEX:1174]
synonym: "predominantly gray regional part of epithalamus" EXACT HUMAN_PREFERRED [BIRNLEX:1174]
-synonym: "predominantly gray regional part of epithalamus" EXACT [BIRNLEX:1174]
is_obsolete: true
consider: BIRNLEX:1174
@@ -174344,8 +174341,8 @@
[Term]
id: UBERON:0022877
name: obsolete regional part of oculomotor nuclear complex
+synonym: "regional part of oculomotor nuclear complex" EXACT HUMAN_PREFERRED [BIRNLEX:1405]
synonym: "regional part of oculomotor nuclear complex" EXACT [BIRNLEX:1405]
-synonym: "regional part of oculomotor nuclear complex" EXACT HUMAN_PREFERRED [BIRNLEX:1405]
is_obsolete: true
consider: BIRNLEX:1405
@@ -174540,8 +174537,8 @@
[Term]
id: UBERON:0023255
name: sub-lobar region
+synonym: "sub-lobar region" EXACT HUMAN_PREFERRED [BIRNLEX:1788]
synonym: "sub-lobar region" EXACT [BIRNLEX:1788]
-synonym: "sub-lobar region" EXACT HUMAN_PREFERRED [BIRNLEX:1788]
xref: BIRNLEX:1788
is_a: UBERON:0016526 {source="NIFSTD"} ! lobe of cerebral hemisphere
@@ -174743,8 +174740,8 @@
id: UBERON:0023623
name: ventral nerve root of sacral spinal cord
synonym: "anterior nerve root of sacral spinal cord" RELATED [BIRNLEX:755]
+synonym: "ventral nerve root of sacral spinal cord" EXACT [BIRNLEX:755]
synonym: "ventral nerve root of sacral spinal cord" EXACT HUMAN_PREFERRED [BIRNLEX:755]
-synonym: "ventral nerve root of sacral spinal cord" EXACT [BIRNLEX:755]
xref: BIRNLEX:755
is_a: UBERON:0009633 {source="NIFSTD"} ! root of sacral nerve
disjoint_from: UBERON:0026006 {source="NIFSTD"} ! dorsal nerve root of lumbar spinal cord
@@ -175502,8 +175499,8 @@
[Term]
id: UBERON:0024285
name: obsolete regional part of basal part of pons
+synonym: "regional part of basal part of pons" EXACT HUMAN_PREFERRED [BIRNLEX:1168]
synonym: "regional part of basal part of pons" EXACT [BIRNLEX:1168]
-synonym: "regional part of basal part of pons" EXACT HUMAN_PREFERRED [BIRNLEX:1168]
is_obsolete: true
consider: BIRNLEX:1168
@@ -175664,8 +175661,8 @@
[Term]
id: UBERON:0024559
name: obsolete predominantly gray regional part of habenula
+synonym: "predominantly gray regional part of habenula" EXACT [BIRNLEX:1443]
synonym: "predominantly gray regional part of habenula" EXACT HUMAN_PREFERRED [BIRNLEX:1443]
-synonym: "predominantly gray regional part of habenula" EXACT [BIRNLEX:1443]
is_obsolete: true
consider: BIRNLEX:1443
@@ -175720,8 +175717,8 @@
[Term]
id: UBERON:0024749
name: obsolete predominantly gray regional part of temporal lobe
+synonym: "predominantly gray regional part of temporal lobe" EXACT [BIRNLEX:1633]
synonym: "predominantly gray regional part of temporal lobe" EXACT HUMAN_PREFERRED [BIRNLEX:1633]
-synonym: "predominantly gray regional part of temporal lobe" EXACT [BIRNLEX:1633]
is_obsolete: true
consider: BIRNLEX:1633
consider: UBERON:0016538
@@ -175850,8 +175847,8 @@
[Term]
id: UBERON:0025033
name: obsolete predominantly gray part of solitary nucleus
+synonym: "predominantly gray part of solitary nucleus" EXACT [BIRNLEX:2660]
synonym: "predominantly gray part of solitary nucleus" EXACT HUMAN_PREFERRED [BIRNLEX:2660]
-synonym: "predominantly gray part of solitary nucleus" EXACT [BIRNLEX:2660]
is_obsolete: true
consider: BIRNLEX:2660
@@ -175858,8 +175855,8 @@
[Term]
id: UBERON:0025067
name: obsolete regional part of corticomedial nuclear complex
+synonym: "regional part of corticomedial nuclear complex" EXACT [BIRNLEX:2697]
synonym: "regional part of corticomedial nuclear complex" EXACT HUMAN_PREFERRED [BIRNLEX:2697]
-synonym: "regional part of corticomedial nuclear complex" EXACT [BIRNLEX:2697]
is_obsolete: true
consider: BIRNLEX:2697
@@ -175957,8 +175954,8 @@
id: UBERON:0025182
name: obsolete regional part of gustatory epithelium
alt_id: UBERON:0025487
+synonym: "regional part of gustatory epithelium" EXACT [BIRNLEX:4100]
synonym: "regional part of gustatory epithelium" EXACT HUMAN_PREFERRED [BIRNLEX:4100]
-synonym: "regional part of gustatory epithelium" EXACT [BIRNLEX:4100]
is_obsolete: true
consider: BIRNLEX:4100
consider: http://uri.neuinfo.org/nif/nifstd/nifext_13
@@ -175966,8 +175963,8 @@
[Term]
id: UBERON:0025236
name: obsolete regional part of cervical spinal cord white matter
+synonym: "regional part of cervical spinal cord white matter" EXACT HUMAN_PREFERRED [BIRNLEX:723]
synonym: "regional part of cervical spinal cord white matter" EXACT [BIRNLEX:723]
-synonym: "regional part of cervical spinal cord white matter" EXACT HUMAN_PREFERRED [BIRNLEX:723]
is_obsolete: true
consider: BIRNLEX:723
@@ -176337,8 +176334,8 @@
[Term]
id: UBERON:0025927
name: obsolete regional part of enteric nervous system
+synonym: "regional part of enteric nervous system" EXACT HUMAN_PREFERRED [BIRNLEX:1179]
synonym: "regional part of enteric nervous system" EXACT [BIRNLEX:1179]
-synonym: "regional part of enteric nervous system" EXACT HUMAN_PREFERRED [BIRNLEX:1179]
is_obsolete: true
consider: BIRNLEX:1179
@@ -176616,8 +176613,8 @@
[Term]
id: UBERON:0026536
name: obsolete regional part of cochlea
+synonym: "regional part of cochlea" EXACT [BIRNLEX:1794]
synonym: "regional part of cochlea" EXACT HUMAN_PREFERRED [BIRNLEX:1794]
-synonym: "regional part of cochlea" EXACT [BIRNLEX:1794]
is_obsolete: true
consider: BIRNLEX:1794
consider: UMLS:C0931696
@@ -176758,8 +176755,8 @@
id: UBERON:0026721
name: medial precentral sulcus
def: "A superficial feature of the frontal lobe that extends from the dorsal surface onto the medial surface of the superior frontal gyrus (Ono-90). (NN)" [BIRNLEX:4008]
+synonym: "medial precentral sulcus" EXACT [BIRNLEX:4008]
synonym: "medial precentral sulcus" EXACT HUMAN_PREFERRED [BIRNLEX:4008]
-synonym: "medial precentral sulcus" EXACT [BIRNLEX:4008]
xref: BIRNLEX:4008
xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1610
is_a: UBERON:0013118 ! sulcus of brain
@@ -177481,8 +177478,8 @@
[Term]
id: UBERON:0028337
name: obsolete regional part of entorhinal cortex
+synonym: "regional part of entorhinal cortex" EXACT [BIRNLEX:2704]
synonym: "regional part of entorhinal cortex" EXACT HUMAN_PREFERRED [BIRNLEX:2704]
-synonym: "regional part of entorhinal cortex" EXACT [BIRNLEX:2704]
is_obsolete: true
consider: BIRNLEX:2704
@@ -177783,8 +177780,8 @@
[Term]
id: UBERON:0028439
name: Ongur, Price, and Ferry (2003) area Iapm
+synonym: "ongur, price, and ferry (2003) area iapm" EXACT HUMAN_PREFERRED [BIRNLEX:4094]
synonym: "ongur, price, and ferry (2003) area iapm" EXACT [BIRNLEX:4094]
-synonym: "ongur, price, and ferry (2003) area iapm" EXACT HUMAN_PREFERRED [BIRNLEX:4094]
xref: BIRNLEX:4094
is_a: UBERON:0026777 {source="NIFSTD"} ! Ongur, Price, and Ferry (2003) prefrontal cortical partition scheme region
@@ -178153,8 +178150,8 @@
[Term]
id: UBERON:0030330
name: obsolete predominantly gray part of rostral intralaminar nuclei
+synonym: "predominantly gray part of rostral intralaminar nuclei" EXACT HUMAN_PREFERRED [BIRNLEX:948]
synonym: "predominantly gray part of rostral intralaminar nuclei" EXACT [BIRNLEX:948]
-synonym: "predominantly gray part of rostral intralaminar nuclei" EXACT HUMAN_PREFERRED [BIRNLEX:948]
is_obsolete: true
consider: BIRNLEX:948
@@ -189252,7 +189249,7 @@
synonym: "supraneural" EXACT [PSPUB:0000164]
synonym: "supraneurals" EXACT PLURAL [TAO:0000442]
xref: ZFA:0000442
-is_a: UBERON:0001474 ! bone element
+is_a: UBERON:0002513 ! endochondral bone
is_a: UBERON:4300035 ! supraneural element
created_by: teleost_anatomy_curators
@@ -190283,7 +190280,7 @@
namespace: uberon/phenoscape-anatomy
def: "basipterygium element that is composed of bone tissue." [OBOL:automatic]
synonym: "basipterygia" EXACT PLURAL [TAO:0000623]
-synonym: "basiptrygium ischiatique" EXACT [PSPUB:0000145]
+synonym: "basipterygium ischiatique" EXACT [PSPUB:0000145]
synonym: "os pelvien" EXACT [PSPUB:0000164]
synonym: "pelvic bone" RELATED [TAO:0000623]
synonym: "pelvic plate" EXACT []
@@ -193995,10 +193992,8 @@
name: supraneural 7 bone
namespace: uberon/phenoscape-anatomy
xref: ZFA:0001163
-is_a: UBERON:0002513 ! endochondral bone
is_a: UBERON:2000442 ! supraneural bone
is_a: UBERON:4300219 ! supraneural 7 element
-relationship: develops_from UBERON:4300266 ! supraneural 7 cartilage
created_by: teleost_anatomy_curators
[Term]
@@ -194007,10 +194002,8 @@
namespace: uberon/phenoscape-anatomy
synonym: "sn6" EXACT [TAO:0001164]
xref: ZFA:0001164
-is_a: UBERON:0002513 ! endochondral bone
is_a: UBERON:2000442 ! supraneural bone
is_a: UBERON:4300218 ! supraneural 6 element
-relationship: develops_from UBERON:4300265 ! supraneural 6 cartilage
created_by: teleost_anatomy_curators
[Term]
@@ -194019,10 +194012,8 @@
namespace: uberon/phenoscape-anatomy
synonym: "sn5" EXACT [TAO:0001165]
xref: ZFA:0001165
-is_a: UBERON:0002513 ! endochondral bone
is_a: UBERON:2000442 ! supraneural bone
is_a: UBERON:4300217 ! supraneural 5 element
-relationship: develops_from UBERON:4300264 ! supraneural 5 cartilage
created_by: teleost_anatomy_curators
[Term]
@@ -194030,10 +194021,8 @@
name: supraneural 9 bone
namespace: uberon/phenoscape-anatomy
xref: ZFA:0001166
-is_a: UBERON:0002513 ! endochondral bone
is_a: UBERON:2000442 ! supraneural bone
is_a: UBERON:4300221 ! supraneural 9 element
-relationship: develops_from UBERON:4300268 ! supraneural 9 cartilage
created_by: teleost_anatomy_curators
[Term]
@@ -194167,7 +194156,6 @@
synonym: "small supraneural" EXACT [TAO:doi\:10.1046/j.1096-3642.2002.00014.x]
synonym: "sn2" EXACT [TAO:0001191]
xref: ZFA:0001191
-is_a: UBERON:0002513 ! endochondral bone
is_a: UBERON:2000442 ! supraneural bone
is_a: UBERON:4300214 ! supraneural 2 element
relationship: develops_from UBERON:2001869 ! supraneural 2 cartilage
@@ -194182,7 +194170,6 @@
synonym: "large supraneural" EXACT [TAO:doi\:10.1046/j.1096-3642.2002.00014.x]
synonym: "sn3" EXACT [TAO:0001192]
xref: ZFA:0001192
-is_a: UBERON:0002513 ! endochondral bone
is_a: UBERON:2000442 ! supraneural bone
is_a: UBERON:4300215 ! supraneural 3 element
relationship: develops_from UBERON:2001870 ! supraneural 3 cartilage
@@ -194193,10 +194180,8 @@
name: supraneural 8 bone
namespace: uberon/phenoscape-anatomy
xref: ZFA:0001193
-is_a: UBERON:0002513 ! endochondral bone
is_a: UBERON:2000442 ! supraneural bone
is_a: UBERON:4300220 ! supraneural 8 element
-relationship: develops_from UBERON:4300267 ! supraneural 8 cartilage
created_by: teleost_anatomy_curators
[Term]
@@ -197718,7 +197703,7 @@
id: UBERON:2001753
name: posttemporal fossa
namespace: uberon/phenoscape-anatomy
-def: "Fossa where the exoccipital forms the medial portion and the epioccipital forms the lateral margin." [ZFIN:ZDB-PUB-961014-192]
+def: "Fossa where the exoccipital forms the medial portion and the epioccipital forms the lateral margin. The posttemporal fossa in most species has two openings separated by the epioccipital bridge." [ZFIN:ZDB-PUB-961014-192] {comment="http://dx.doi.org/10.1590/S1679-62252010000300001"}
comment: Chen 1994 gives these two synonyms: 'temporal fossa', Gauba 1967; and 'temporal groove', Mahajan 1966.
synonym: "temporal fossa" RELATED [TAO:0001753]
synonym: "temporal groove" EXACT [TAO:0001753]
@@ -198312,6 +198297,7 @@
namespace: uberon/phenoscape-anatomy
def: "Nuchal plate that is unpaired and part of the supraneural and in contact, or not, with the supraoccipital crest anteriorly and middle nuchal plate posteriorly." [TAO:wd]
synonym: "first nuchal plate" EXACT [TAO:0001816]
+is_a: UBERON:0002513 ! endochondral bone
is_a: UBERON:2001815 ! nuchal plate
relationship: part_of UBERON:2000442 ! supraneural bone
created_by: teleost_anatomy_curators
@@ -198930,7 +198916,6 @@
name: supraneural 1 bone
namespace: uberon/phenoscape-anatomy
def: "Supraneural bone located dorsal to vertebra 1." [TAO:wd]
-is_a: UBERON:0002513 ! endochondral bone
is_a: UBERON:2000442 ! supraneural bone
is_a: UBERON:4300213 ! supraneural 1 element
relationship: develops_from UBERON:2001889 ! supraneural 1 cartilage
@@ -200042,10 +200027,8 @@
name: supraneural 4 bone
namespace: uberon/phenoscape-anatomy
def: "Supraneural dorsal to neural spine 4." [TAO:wd]
-is_a: UBERON:0002513 ! endochondral bone
is_a: UBERON:2000442 ! supraneural bone
is_a: UBERON:4300216 ! supraneural 4 element
-relationship: develops_from UBERON:4300263 ! supraneural 4 cartilage
created_by: teleost_anatomy_curators
[Term]
@@ -200832,10 +200815,13 @@
[Term]
id: UBERON:2002095
-name: third posttemporal fossa
+name: ventromedial opening of posttemporal fossa
namespace: uberon/phenoscape-anatomy
+def: "A third opening of the posttemporal fossa posteriorly located relative to the fossa. It is bordered completely by the epiocciptial, or by both the epioccipital and exoccipital." [] {def="http://dx.doi.org/10.1590/S1679-62252010000300001"}
comment: Present in some characiforms.
-is_a: UBERON:2001753 ! posttemporal fossa
+synonym: "third posttemporal fossa" EXACT []
+is_a: UBERON:0004705 ! fenestra
+relationship: part_of UBERON:2001753 ! posttemporal fossa
created_by: teleost_anatomy_curators
[Term]
@@ -212584,6 +212570,11 @@
created_by: amphibian_anatomy_curators
[Term]
+id: UBERON:3010730
+is_a: UBERON:0011648 ! jaw muscle
+is_a: UBERON:0018544 ! trigeminal nerve muscle
+
+[Term]
id: UBERON:3010731
name: M. coracobrachialis brevis
namespace: uberon/phenoscape-anatomy
@@ -214547,6 +214538,8 @@
name: obsolete suprascapular fossa
namespace: none
def: "Fossa located on the medial surface of the scapula above the glenoid" []
+is_a: UBERON:0004704 ! bone fossa
+relationship: part_of UBERON:0006849 ! scapula
is_obsolete: true
created_by: AD
@@ -215012,6 +215005,8 @@
namespace: none
def: "The scapula's contribution to the glenoid fossa." []
comment: replaced by 'pars glenoidalis of scapula'
+is_a: UBERON:0005913 ! zone of bone organ
+relationship: part_of UBERON:0006849 ! scapula
is_obsolete: true
created_by: AD
@@ -216716,7 +216711,6 @@
id: UBERON:4300108
name: lepidotrichial segment
def: "Zone of bone organ that is part of a lepidotrich and connected to other segments by collagen fibers. These segments lend flexibility to the lepidtrich. " [DOI 10.1002/jmor.20161]
-synonym: "segment of fin ray" EXACT []
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0005913 ! zone of bone organ
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
@@ -217118,7 +217112,6 @@
[Term]
id: UBERON:4300179
name: inner tooth row of premaxilla
-def: "Tooth row on the premaxilla that is lingually located relative to other tooth rows." []
is_a: UBERON:2001833 ! premaxillary tooth row
created_by: http://orcid.org/0000-0003-3162-7490
@@ -217636,96 +217629,16 @@
relationship: part_of UBERON:0011085 ! palatoquadrate arch
[Term]
-id: UBERON:4300261
-name: pectoral fin hook
-def: "Process that is part of the pectoral fin lepidotrichium." []
-is_a: UBERON:0004120 ! mesoderm-derived structure
-is_a: UBERON:0004121 ! ectoderm-derived structure
-is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
-is_a: UBERON:4100000 ! skeletal element projection
-relationship: part_of UBERON:4000175 ! pectoral fin lepidotrichium
+id: UBERON:4300274
+name: adipose fin ray
+def: "Soft ray that is part of the adipose fin." [https://doi.org/10.1098/rspb.2013.3120]
+is_a: UBERON:4500008 ! median fin lepidotrichium
+intersection_of: UBERON:4000172 ! lepidotrichium
+intersection_of: part_of UBERON:2000251 ! adipose fin
+relationship: part_of UBERON:4500004 ! adipose fin skeleton
+created_by: WD
[Term]
-id: UBERON:4300262
-name: pelvic fin hook
-def: "Process that is part of the pelvic fin lepidotrichium." []
-is_a: UBERON:0004120 ! mesoderm-derived structure
-is_a: UBERON:0004121 ! ectoderm-derived structure
-is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
-is_a: UBERON:4100000 ! skeletal element projection
-relationship: part_of UBERON:4000173 ! pelvic fin lepidotrichium
-
-[Term]
-id: UBERON:4300263
-name: supraneural 4 cartilage
-is_a: UBERON:4300036 ! supraneural cartilage
-is_a: UBERON:4300216 ! supraneural 4 element
-
-[Term]
-id: UBERON:4300264
-name: supraneural 5 cartilage
-is_a: UBERON:4300036 ! supraneural cartilage
-is_a: UBERON:4300217 ! supraneural 5 element
-
-[Term]
-id: UBERON:4300265
-name: supraneural 6 cartilage
-is_a: UBERON:4300036 ! supraneural cartilage
-is_a: UBERON:4300218 ! supraneural 6 element
-
-[Term]
-id: UBERON:4300266
-name: supraneural 7 cartilage
-is_a: UBERON:4300036 ! supraneural cartilage
-is_a: UBERON:4300219 ! supraneural 7 element
-
-[Term]
-id: UBERON:4300267
-name: supraneural 8 cartilage
-is_a: UBERON:4300036 ! supraneural cartilage
-is_a: UBERON:4300220 ! supraneural 8 element
-
-[Term]
-id: UBERON:4300268
-name: supraneural 9 cartilage
-is_a: UBERON:4300036 ! supraneural cartilage
-is_a: UBERON:4300221 ! supraneural 9 element
-
-[Term]
-id: UBERON:4300269
-name: epioccipital bridge
-def: "Extension of the exoccipital that extends over the posttemporal fossa." [http://dx.doi.org/10.1590/S1679-62252010000300001]
-synonym: "epiotic bridge" EXACT []
-is_a: UBERON:0004121 ! ectoderm-derived structure
-is_a: UBERON:0005913 ! zone of bone organ
-is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
-relationship: part_of UBERON:2001412 ! epiotic
-created_by: http://orcid.org/0000-0003-3162-7490
-
-[Term]
-id: UBERON:4300270
-name: outer tooth row of premaxilla
-def: "Tooth row on the premaxilla that is labially located relative to other tooth rows." []
-is_a: UBERON:2001833 ! premaxillary tooth row
-created_by: http://orcid.org/0000-0003-3162-7490
-
-[Term]
-id: UBERON:4300271
-name: interneural spine cartilage
-def: "Cartilage element adjacent to neural spine of preural centrum." []
-synonym: "CINPU" EXACT []
-is_a: UBERON:0007844 ! cartilage element
-relationship: part_of UBERON:4000167 ! caudal fin skeleton
-
-[Term]
-id: UBERON:4300272
-name: interhaemal spine cartilage
-def: "Cartilage element adjacent to haemal spine of preural centrum." []
-synonym: "CIHPU" EXACT []
-is_a: UBERON:0007844 ! cartilage element
-relationship: part_of UBERON:4000167 ! caudal fin skeleton
-
-[Term]
id: UBERON:4400000
name: metapterygium cartilage
namespace: none
@@ -217917,6 +217830,45 @@
created_by: LMJ
[Term]
+id: UBERON:4500016
+name: premaxilla articular process
+def: "Pharyngeal arch bone immediately posterior to the ascending process, the medial surface of which articulates with the anterior end of the maxillary." []
+comment: The change from a premaxilla in which the ascending and articular processes are separate to one in which they are firmly united has occurred many times in higher teleosts. - Gosline, 1987 (Jaw Structures and Movements in Higher Teleostean Fishes)
+synonym: "articular process of the premaxilla" EXACT []
+is_a: UBERON:0010313 ! neural crest-derived structure
+is_a: UBERON:4100000 ! skeletal element projection
+relationship: part_of UBERON:0002244 ! premaxilla
+created_by: LMJ
+
+[Term]
+id: UBERON:4500017
+name: interarcual bone
+def: "Pharyngeal arch bone located between uncinate process of epibranchial 1 and pharyngobranchial 2." []
+is_a: UBERON:0002513 ! endochondral bone
+is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
+relationship: develops_from UBERON:2002269 ! interarcual cartilage
+relationship: part_of UBERON:0005886 ! post-hyoid pharyngeal arch skeleton
+created_by: LMJ
+
+[Term]
+id: UBERON:4500018
+name: premaxilla maxillary process
+def: "Process of the premaxilla that extends upward, and often lies against the medial surface of the maxillary." []
+synonym: "postmaxillary process" EXACT []
+is_a: UBERON:0010313 ! neural crest-derived structure
+is_a: UBERON:4100000 ! skeletal element projection
+relationship: part_of UBERON:0002244 ! premaxilla
+created_by: LMJ
+
+[Term]
+id: UBERON:4500020
+name: pelvic fin distal radial cartilage
+def: "Pelvic fin distal radial element that is composed of cartilage tissue" []
+is_a: UBERON:1700006 ! paired fin radial cartilage
+is_a: UBERON:2001538 ! pelvic radial cartilage
+created_by: LMJ
+
+[Term]
id: UBERON:5001463
name: manual digit 1 plus metapodial segment
def: "A subdivision of the autopod consisting of manual digit 1 plus the region incorporating a single metapodial element. These segments are typically repeated along the pre-axiom to post-axial axis." [http://orcid.org/0000-0002-6601-2165]
Modified: uberon/trunk/basic.owl
===================================================================
--- uberon/trunk/basic.owl 2019-07-07 21:31:10 UTC (rev 5418)
+++ uberon/trunk/basic.owl 2019-12-11 14:32:14 UTC (rev 5419)
@@ -17,7 +17,7 @@
xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"
xmlns:insect-anatomy="http://purl.obolibrary.org/obo/uberon/insect-anatomy#">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/basic.owl">
- <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/releases/2019-06-27/basic.owl"/>
+ <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/releases/2019-11-22/basic.owl"/>
<dc:contributor rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Alan Ruttenberg</dc:contributor>
<dc:contributor rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Alexander Diehl</dc:contributor>
<dc:contributor rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Ann Maglia</dc:contributor>
@@ -181,7 +181,7 @@
<rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/TEMP>) VersionIRI(<null>))) [Axioms: 437 Logical Axioms: 0]</rdfs:comment>
<rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/uberon-bridge-to-bfo.owl>) VersionIRI(<null>))) [Axioms: 20 Logical Axioms: 9]</rdfs:comment>
<rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/uberon/disjoint_union_over.owl>) VersionIRI(<null>))) [Axioms: 38 Logical Axioms: 38]</rdfs:comment>
- <rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/uberon/ext.owl>) VersionIRI(<null>))) [Axioms: 26416 Logical Axioms: 4887]</rdfs:comment>
+ <rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/uberon/ext.owl>) VersionIRI(<null>))) [Axioms: 26405 Logical Axioms: 4891]</rdfs:comment>
<rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/uberon/insect-anatomy.owl>) VersionIRI(<null>))) [Axioms: 2098 Logical Axioms: 650]</rdfs:comment>
<rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/uberon/reflexivity_axioms.owl>) VersionIRI(<null>))) [Axioms: 2 Logical Axioms: 2]</rdfs:comment>
<foaf:homepage rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://uberon.org</foaf:homepage>
@@ -17343,7 +17343,6 @@
<oboInOwl:hasDbXref rdf:resource="http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2055"/>
<oboInOwl:hasDbXref rdf:resource="http://en.wikipedia.org/wiki/Limbic_system"/>
<oboInOwl:hasDbXref rdf:resource="http://linkedlifedata.com/resource/umls/id/C0023715"/>
- <oboInOwl:hasDbXref rdf:resource="http://uri.neuinfo.org/nif/nifstd/UBERON_0000349"/>
<oboInOwl:hasDbXref rdf:resource="http://www.snomedbrowser.com/Codes/Details/361342009"/>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">BTO:0000928</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">CALOHA:TS-1307</oboInOwl:hasDbXref>
@@ -102505,7 +102504,6 @@
<obo:UBPROP_0000007 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">labial</obo:UBPROP_0000007>
<oboInOwl:hasDbXref rdf:resource="http://en.wikipedia.org/wiki/Lip"/>
<oboInOwl:hasDbXref rdf:resource="http://linkedlifedata.com/resource/umls/id/C0023759"/>
- <oboInOwl:hasDbXref rdf:resource="http://uri.neuinfo.org/nif/nifstd/UBERON_0001833"/>
<oboInOwl:hasDbXref rdf:resource="http://www.snomedbrowser.com/Codes/Details/181221003"/>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">BTO:0001647</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">CALOHA:TS-0558</oboInOwl:hasDbXref>
@@ -107374,7 +107372,6 @@
<oboInOwl:hasDbXref rdf:resource="http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1377"/>
<oboInOwl:hasDbXref rdf:resource="http://en.wikipedia.org/wiki/Choroid_plexus"/>
<oboInOwl:hasDbXref rdf:resource="http://linkedlifedata.com/resource/umls/id/C0008524"/>
- <oboInOwl:hasDbXref rdf:resource="http://uri.neuinfo.org/nif/nifstd/UBERON_0001886"/>
<oboInOwl:hasDbXref rdf:resource="http://www.snomedbrowser.com/Codes/Details/264450003"/>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">BAMS:CHP</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">BAMS:GHP</oboInOwl:hasDbXref>
@@ -129522,7 +129519,6 @@
<obo:UBPROP_0000012 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">note that this corresponds to FMA:'free upper limb' (a limb segment), NOT FMA:'upper limb'. Both MA and FMA consider shoulder (and shoulder bones) part of upper limb</obo:UBPROP_0000012>
<oboInOwl:hasDbXref rdf:resource="http://en.wikipedia.org/wiki/Forelimb"/>
<oboInOwl:hasDbXref rdf:resource="http://linkedlifedata.com/resource/umls/id/C1140618"/>
- <oboInOwl:hasDbXref rdf:resource="http://uri.neuinfo.org/nif/nifstd/UBERON_0002102"/>
<oboInOwl:hasDbXref rdf:resource="http://www.snomedbrowser.com/Codes/Details/182245002"/>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">AAO:0000205</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">BTO:0001729</oboInOwl:hasDbXref>
@@ -275073,7 +275069,6 @@
<owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0003917">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000062"/>
- <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0001013"/>
<obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">An insect gland dorsal to the insect gut, with a function analogous to that of the vertebrate liver. It is a storage organ for fats, glycogen and protein and is a major site of intermediary metabolism.</obo:IAO_0000115>
<obo:IAO_0000116 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">this term should be ceded to the arthropod anatomy ontology</obo:IAO_0000116>
<obo:UBPROP_0000001 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A fatty tissue especially of nearly mature insect larvae that serves as a food reserve[BTO].</obo:UBPROP_0000001>
@@ -535305,10 +535300,20 @@
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000162"/>
</owl:Restriction>
</rdfs:subClassOf>
+ <obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">An evagination of the cloaca. In Testudines these are hypothesized to function in different physiological roles, primarily in respiration.</obo:IAO_0000115>
<oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">uberon</oboInOwl:hasOBONamespace>
<oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">UBERON:0011510</oboInOwl:id>
+ <rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Taxon notes: in cryptodires, bursae apparently function primarily in buoyancy control and secondarily in ion transport and nesting, but several pleurodires have been shown recently to use them in aquatic respiration.[PMID:11479904]</rdfs:comment>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">cloacal bursa</rdfs:label>
+ <foaf:depicted_by rdf:resource="https://upload.wikimedia.org/wikipedia/commons/d/d8/Turtle_Cloacal_Respiration.png"/>
</owl:Class>
+ <owl:Axiom>
+ <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/UBERON_0011510"/>
+ <owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
+ <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">An evagination of the cloaca. In Testudines these are hypothesized to function in different physiological roles, primarily in respiration.</owl:annotatedTarget>
+ <oboInOwl:hasDbXref rdf:resource="http://www.ncbi.nlm.nih.gov/pubmed/11479904"/>
+ <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">UBERON:cjm</oboInOwl:hasDbXref>
+ </owl:Axiom>
@@ -606973,7 +606978,6 @@
</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Light reflecting layer found in a variety of different types of eye.</obo:IAO_0000115>
- <obo:RO_0002175 rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_72037"/>
<obo:UBPROP_0000007 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">tapetal</obo:UBPROP_0000007>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">SPD:0000343</oboInOwl:hasDbXref>
<oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">tapetal layer</oboInOwl:hasExactSynonym>
@@ -698571,7 +698575,7 @@
<!-- http://purl.obolibrary.org/obo/UBERON_2000442 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_2000442">
- <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0001474"/>
+ <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0002513"/>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_4300035"/>
<obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Endochondral bone that is median and located in the dorsal skeletogenous septum between the cranium and the dorsal fin.</obo:IAO_0000115>
<core1:provenance_notes rdf:datatype="http://www.w3.org/2001/XMLSchema#string">This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon</core1:provenance_notes>
@@ -701139,7 +701143,7 @@
<obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">basipterygium element that is composed of bone tissue.</obo:IAO_0000115>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">ZFA:0000623</oboInOwl:hasDbXref>
<oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">basipterygia</oboInOwl:hasExactSynonym>
- <oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">basiptrygium ischiatique</oboInOwl:hasExactSynonym>
+ <oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">basipterygium ischiatique</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">os pelvien</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">pelvic plate</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">pubic plate</oboInOwl:hasExactSynonym>
@@ -701163,7 +701167,7 @@
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/UBERON_2000623"/>
<owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"/>
- <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">basiptrygium ischiatique</owl:annotatedTarget>
+ <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">basipterygium ischiatique</owl:annotatedTarget>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PSPUB:0000145</oboInOwl:hasDbXref>
</owl:Axiom>
<owl:Axiom>
@@ -710553,15 +710557,8 @@
<!-- http://purl.obolibrary.org/obo/UBERON_2001163 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_2001163">
- <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0002513"/>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_2000442"/>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_4300219"/>
- <rdfs:subClassOf>
- <owl:Restriction>
- <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0002202"/>
- <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_4300266"/>
- </owl:Restriction>
- </rdfs:subClassOf>
<core1:provenance_notes rdf:datatype="http://www.w3.org/2001/XMLSchema#string">This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon</core1:provenance_notes>
<oboInOwl:created_by rdf:datatype="http://www.w3.org/2001/XMLSchema#string">teleost_anatomy_curators</oboInOwl:created_by>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">ZFA:0001163</oboInOwl:hasDbXref>
@@ -710574,15 +710571,8 @@
<!-- http://purl.obolibrary.org/obo/UBERON_2001164 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_2001164">
- <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0002513"/>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_2000442"/>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_4300218"/>
- <rdfs:subClassOf>
- <owl:Restriction>
- <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0002202"/>
- <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_4300265"/>
- </owl:Restriction>
- </rdfs:subClassOf>
<core1:provenance_notes rdf:datatype="http://www.w3.org/2001/XMLSchema#string">This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon</core1:provenance_notes>
<oboInOwl:created_by rdf:datatype="http://www.w3.org/2001/XMLSchema#string">teleost_anatomy_curators</oboInOwl:created_by>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">ZFA:0001164</oboInOwl:hasDbXref>
@@ -710602,15 +710592,8 @@
<!-- http://purl.obolibrary.org/obo/UBERON_2001165 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_2001165">
- <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0002513"/>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_2000442"/>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_4300217"/>
- <rdfs:subClassOf>
- <owl:Restriction>
- <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0002202"/>
- <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_4300264"/>
- </owl:Restriction>
- </rdfs:subClassOf>
<core1:provenance_notes rdf:datatype="http://www.w3.org/2001/XMLSchema#string">This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon</core1:provenance_notes>
<oboInOwl:created_by rdf:datatype="http://www.w3.org/2001/XMLSchema#string">teleost_anatomy_curators</oboInOwl:created_by>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">ZFA:0001165</oboInOwl:hasDbXref>
@@ -710630,15 +710613,8 @@
<!-- http://purl.obolibrary.org/obo/UBERON_2001166 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_2001166">
- <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0002513"/>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_2000442"/>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_4300221"/>
- <rdfs:subClassOf>
- <owl:Restriction>
- <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0002202"/>
- <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_4300268"/>
- </owl:Restriction>
- </rdfs:subClassOf>
<core1:provenance_notes rdf:datatype="http://www.w3.org/2001/XMLSchema#string">This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon</core1:provenance_notes>
<oboInOwl:created_by rdf:datatype="http://www.w3.org/2001/XMLSchema#string">teleost_anatomy_curators</oboInOwl:created_by>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">ZFA:0001166</oboInOwl:hasDbXref>
@@ -710958,7 +710934,6 @@
<!-- http://purl.obolibrary.org/obo/UBERON_2001191 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_2001191">
- <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0002513"/>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_2000442"/>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_4300214"/>
<rdfs:subClassOf>
@@ -711001,7 +710976,6 @@
<!-- http://purl.obolibrary.org/obo/UBERON_2001192 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_2001192">
- <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0002513"/>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_2000442"/>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_4300215"/>
<rdfs:subClassOf>
@@ -711044,15 +711018,8 @@
<!-- http://purl.obolibrary.org/obo/UBERON_2001193 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_2001193">
- <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0002513"/>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_2000442"/>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_4300220"/>
- <rdfs:subClassOf>
- <owl:Restriction>
- <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0002202"/>
- <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_4300267"/>
- </owl:Restriction>
- </rdfs:subClassOf>
<core1:provenance_notes rdf:datatype="http://www.w3.org/2001/XMLSchema#string">This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon</core1:provenance_notes>
<oboInOwl:created_by rdf:datatype="http://www.w3.org/2001/XMLSchema#string">teleost_anatomy_curators</oboInOwl:created_by>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">ZFA:0001193</oboInOwl:hasDbXref>
@@ -720254,7 +720221,7 @@
<owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_2001753">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0004704"/>
- <obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Fossa where the exoccipital forms the medial portion and the epioccipital forms the lateral margin.</obo:IAO_0000115>
+ <obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Fossa where the exoccipital forms the medial portion and the epioccipital forms the lateral margin. The posttemporal fossa in most species has two openings separated by the epioccipital bridge.</obo:IAO_0000115>
<core1:provenance_notes rdf:datatype="http://www.w3.org/2001/XMLSchema#string">This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon</core1:provenance_notes>
<oboInOwl:created_by rdf:datatype="http://www.w3.org/2001/XMLSchema#string">teleost_anatomy_curators</oboInOwl:created_by>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">ZFA:0005628</oboInOwl:hasDbXref>
@@ -720267,8 +720234,9 @@
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/UBERON_2001753"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
- <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Fossa where the exoccipital forms the medial portion and the epioccipital forms the lateral margin.</owl:annotatedTarget>
+ <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Fossa where the exoccipital forms the medial portion and the epioccipital forms the lateral margin. The posttemporal fossa in most species has two openings separated by the epioccipital bridge.</owl:annotatedTarget>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">ZFIN:ZDB-PUB-961014-192</oboInOwl:hasDbXref>
+ <rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string">http://dx.doi.org/10.1590/S1679-62252010000300001</rdfs:comment>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/UBERON_2001753"/>
@@ -721613,6 +721581,7 @@
<!-- http://purl.obolibrary.org/obo/UBERON_2001816 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_2001816">
+ <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0002513"/>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_2001815"/>
<rdfs:subClassOf>
<owl:Restriction>
@@ -723221,7 +723190,6 @@
<!-- http://purl.obolibrary.org/obo/UBERON_2001888 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_2001888">
- <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0002513"/>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_2000442"/>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_4300213"/>
<rdfs:subClassOf>
@@ -726262,15 +726230,8 @@
<!-- http://purl.obolibrary.org/obo/UBERON_2002007 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_2002007">
- <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0002513"/>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_2000442"/>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_4300216"/>
- <rdfs:subClassOf>
- <owl:Restriction>
- <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0002202"/>
- <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_4300263"/>
- </owl:Restriction>
- </rdfs:subClassOf>
<obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Supraneural dorsal to neural spine 4.</obo:IAO_0000115>
<core1:provenance_notes rdf:datatype="http://www.w3.org/2001/XMLSchema#string">This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon</core1:provenance_notes>
<oboInOwl:created_by rdf:datatype="http://www.w3.org/2001/XMLSchema#string">teleost_anatomy_curators</oboInOwl:created_by>
@@ -728435,13 +728396,27 @@
<!-- http://purl.obolibrary.org/obo/UBERON_2002095 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_2002095">
- <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_2001753"/>
+ ...
[truncated message content] |
|
From: <cmu...@us...> - 2018-11-27 05:08:12
|
Revision: 5416
http://sourceforge.net/p/obo/svn/5416
Author: cmungall
Date: 2018-11-27 05:07:35 +0000 (Tue, 27 Nov 2018)
Log Message:
-----------
new release
Modified Paths:
--------------
uberon/trunk/basic.obo
uberon/trunk/basic.owl
uberon/trunk/bridge/uberon-bridge-to-aao.obo
uberon/trunk/bridge/uberon-bridge-to-aao.owl
uberon/trunk/bridge/uberon-bridge-to-aeo.obo
uberon/trunk/bridge/uberon-bridge-to-aeo.owl
uberon/trunk/bridge/uberon-bridge-to-bila.obo
uberon/trunk/bridge/uberon-bridge-to-bila.owl
uberon/trunk/bridge/uberon-bridge-to-caro.obo
uberon/trunk/bridge/uberon-bridge-to-caro.owl
uberon/trunk/bridge/uberon-bridge-to-dhba.obo
uberon/trunk/bridge/uberon-bridge-to-dhba.owl
uberon/trunk/bridge/uberon-bridge-to-dmba.obo
uberon/trunk/bridge/uberon-bridge-to-dmba.owl
uberon/trunk/bridge/uberon-bridge-to-efo.obo
uberon/trunk/bridge/uberon-bridge-to-efo.owl
uberon/trunk/bridge/uberon-bridge-to-ehdaa.obo
uberon/trunk/bridge/uberon-bridge-to-ehdaa.owl
uberon/trunk/bridge/uberon-bridge-to-ehdaa2.obo
uberon/trunk/bridge/uberon-bridge-to-ehdaa2.owl
uberon/trunk/bridge/uberon-bridge-to-emapa.obo
uberon/trunk/bridge/uberon-bridge-to-emapa.owl
uberon/trunk/bridge/uberon-bridge-to-fbbt.obo
uberon/trunk/bridge/uberon-bridge-to-fbbt.owl
uberon/trunk/bridge/uberon-bridge-to-fbdv.obo
uberon/trunk/bridge/uberon-bridge-to-fbdv.owl
uberon/trunk/bridge/uberon-bridge-to-fma.obo
uberon/trunk/bridge/uberon-bridge-to-fma.owl
uberon/trunk/bridge/uberon-bridge-to-go.obo
uberon/trunk/bridge/uberon-bridge-to-go.owl
uberon/trunk/bridge/uberon-bridge-to-hao.obo
uberon/trunk/bridge/uberon-bridge-to-hao.owl
uberon/trunk/bridge/uberon-bridge-to-hba.obo
uberon/trunk/bridge/uberon-bridge-to-hba.owl
uberon/trunk/bridge/uberon-bridge-to-ma.obo
uberon/trunk/bridge/uberon-bridge-to-ma.owl
uberon/trunk/bridge/uberon-bridge-to-mba.obo
uberon/trunk/bridge/uberon-bridge-to-mba.owl
uberon/trunk/bridge/uberon-bridge-to-mfo.obo
uberon/trunk/bridge/uberon-bridge-to-mfo.owl
uberon/trunk/bridge/uberon-bridge-to-og.obo
uberon/trunk/bridge/uberon-bridge-to-og.owl
uberon/trunk/bridge/uberon-bridge-to-pba.obo
uberon/trunk/bridge/uberon-bridge-to-pba.owl
uberon/trunk/bridge/uberon-bridge-to-sctid.obo
uberon/trunk/bridge/uberon-bridge-to-sctid.owl
uberon/trunk/bridge/uberon-bridge-to-spd.obo
uberon/trunk/bridge/uberon-bridge-to-spd.owl
uberon/trunk/bridge/uberon-bridge-to-tads.obo
uberon/trunk/bridge/uberon-bridge-to-tads.owl
uberon/trunk/bridge/uberon-bridge-to-tao.obo
uberon/trunk/bridge/uberon-bridge-to-tao.owl
uberon/trunk/bridge/uberon-bridge-to-tgma.obo
uberon/trunk/bridge/uberon-bridge-to-tgma.owl
uberon/trunk/bridge/uberon-bridge-to-vsao.obo
uberon/trunk/bridge/uberon-bridge-to-vsao.owl
uberon/trunk/bridge/uberon-bridge-to-wbbt.obo
uberon/trunk/bridge/uberon-bridge-to-wbbt.owl
uberon/trunk/bridge/uberon-bridge-to-wbls.obo
uberon/trunk/bridge/uberon-bridge-to-wbls.owl
uberon/trunk/bridge/uberon-bridge-to-xao.obo
uberon/trunk/bridge/uberon-bridge-to-xao.owl
uberon/trunk/bridge/uberon-bridge-to-zfa.obo
uberon/trunk/bridge/uberon-bridge-to-zfa.owl
uberon/trunk/bridge/uberon-bridge-to-zfs.obo
uberon/trunk/bridge/uberon-bridge-to-zfs.owl
uberon/trunk/chebi_import.owl
uberon/trunk/cl_import.owl
uberon/trunk/composite-metazoan-basic.obo
uberon/trunk/composite-metazoan.obo
uberon/trunk/composite-metazoan.owl
uberon/trunk/composite-vertebrate.obo
uberon/trunk/composite-vertebrate.owl
uberon/trunk/core.obo
uberon/trunk/core.owl
uberon/trunk/diffs/uberon-diff.md
uberon/trunk/ext.obo
uberon/trunk/ext.owl
uberon/trunk/go_import.owl
uberon/trunk/merged.obo
uberon/trunk/merged.owl
uberon/trunk/ncbitaxon_import.owl
uberon/trunk/pato_import.owl
uberon/trunk/pr_import.owl
uberon/trunk/reports/stages-human-report.tsv
uberon/trunk/reports/stages-metazoan-report.tsv
uberon/trunk/reports/stages-mouse-report.tsv
uberon/trunk/reports/stages-xenopus-report.tsv
uberon/trunk/ro_import.owl
uberon/trunk/subsets/amniote-basic.obo
uberon/trunk/subsets/amniote-basic.owl
uberon/trunk/subsets/appendicular-minimal.obo
uberon/trunk/subsets/circulatory-minimal.obo
uberon/trunk/subsets/cranial-minimal.obo
uberon/trunk/subsets/cumbo.obo
uberon/trunk/subsets/cumbo.owl
uberon/trunk/subsets/digestive-minimal.obo
uberon/trunk/subsets/efo-slim.obo
uberon/trunk/subsets/efo-slim.owl
uberon/trunk/subsets/euarchontoglires-basic.obo
uberon/trunk/subsets/euarchontoglires-basic.owl
uberon/trunk/subsets/excretory-minimal.obo
uberon/trunk/subsets/immune-minimal.obo
uberon/trunk/subsets/mouse-view.owl
uberon/trunk/subsets/musculoskeletal-minimal.obo
uberon/trunk/subsets/nervous-minimal.obo
uberon/trunk/subsets/pulmonary-minimal.obo
uberon/trunk/subsets/reproductive-minimal.obo
uberon/trunk/subsets/sensory-minimal.obo
uberon/trunk/subsets/uberon-with-isa-for-FMA-MA-ZFA.obo
uberon/trunk/subsets/vertebrate-head.obo
uberon/trunk/uberon-base.owl
uberon/trunk/uberon.obo
uberon/trunk/uberon.owl
Modified: uberon/trunk/basic.obo
===================================================================
--- uberon/trunk/basic.obo 2018-10-14 21:01:36 UTC (rev 5415)
+++ uberon/trunk/basic.obo 2018-11-27 05:07:35 UTC (rev 5416)
@@ -1,6 +1,6 @@
format-version: 1.2
-data-version: uberon/releases/2018-10-14/basic.owl
-date: 14:10:2018 12:18
+data-version: uberon/releases/2018-11-25/basic.owl
+date: 25:11:2018 16:59
saved-by: cjm
subsetdef: cumbo "CUMBO"
subsetdef: cyclostome_subset "cyclostome structures"
@@ -46,7 +46,7 @@
default-namespace: uberon
remark: Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/TEMP>) VersionIRI(<null>))) [Axioms: 437 Logical Axioms: 0]
remark: Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/uberon-bridge-to-bfo.owl>) VersionIRI(<null>))) [Axioms: 20 Logical Axioms: 9]
-remark: Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/uberon/ext.owl>) VersionIRI(<null>))) [Axioms: 26316 Logical Axioms: 4863]
+remark: Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/uberon/ext.owl>) VersionIRI(<null>))) [Axioms: 26366 Logical Axioms: 4877]
remark: Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/uberon/insect-anatomy.owl>) VersionIRI(<null>))) [Axioms: 2098 Logical Axioms: 650]
remark: Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/uberon/reflexivity_axioms.owl>) VersionIRI(<null>))) [Axioms: 2 Logical Axioms: 2]
treat-xrefs-as-equivalent: AEO
@@ -1136,7 +1136,7 @@
xref: ZFA:0000200
is_a: UBERON:0001800 {source="MA"} ! sensory ganglion
is_a: UBERON:0010313 ! neural crest-derived structure
-relationship: develops_from UBERON:0003083 {source="http://dx.doi.org/10.1101/gr.157586.113", source="https://github.com/obophenotype/uberon/wiki/The-neural-crest", source="ZFA"} ! trunk neural crest
+relationship: develops_from UBERON:0003083 {source="https://doi.org/10.1101/gr.157586.113", source="https://github.com/obophenotype/uberon/wiki/The-neural-crest", source="ZFA"} ! trunk neural crest
[Term]
id: UBERON:0000045
@@ -1209,7 +1209,7 @@
[Term]
id: UBERON:0000048
name: pinhole eye
-def: "Simple eye that has a small aperture (which may be adjustable) and deep pit. It is only found in the nautiloids." [http://dx.doi.org/10.1146/annurev.ne.15.030192.000245, http://en.wikipedia.org/wiki/Pinhole_eye]
+def: "Simple eye that has a small aperture (which may be adjustable) and deep pit. It is only found in the nautiloids." [http://en.wikipedia.org/wiki/Pinhole_eye, https://doi.org/10.1146/annurev.ne.15.030192.000245]
subset: grouping_class
subset: uberon_slim
xref: Pinhole:eye
@@ -1385,7 +1385,7 @@
is_a: UBERON:0015212 ! lateral structure
relationship: develops_from UBERON:0005081 {source="GO"} ! ureter ureteric bud
relationship: part_of UBERON:0000468 ! multicellular organism
-relationship: part_of UBERON:0011143 {source="FMA"} ! upper urinary tract
+relationship: part_of UBERON:0036295 ! renal pelvis/ureter
[Term]
id: UBERON:0000057
@@ -2652,7 +2652,7 @@
[Term]
id: UBERON:0000120
name: blood brain barrier
-def: "Cell layer consisting of lining cells that separates the central nervous system and the bloodstream. The BBB may consist of endothelial cells or glial cells. An endothelial barrier may have arisen independently several times during evolution. In bichir and lungfish the barrier is formed by brain endothelial cells, while in sturgeon it is formed by a complex perivascular glial sheath, but with no detectable tight junctions." [http://dx.doi.org/10.1002/glia.20642, http://en.wikipedia.org/wiki/Blood-brain_barrier]
+def: "Cell layer consisting of lining cells that separates the central nervous system and the bloodstream. The BBB may consist of endothelial cells or glial cells. An endothelial barrier may have arisen independently several times during evolution. In bichir and lungfish the barrier is formed by brain endothelial cells, while in sturgeon it is formed by a complex perivascular glial sheath, but with no detectable tight junctions." [http://en.wikipedia.org/wiki/Blood-brain_barrier, https://doi.org/10.1002/glia.20642]
synonym: "BBB" RELATED []
synonym: "blood-brain barrier" EXACT []
xref: Blood-brain:barrier
@@ -5467,7 +5467,7 @@
[Term]
id: UBERON:0000412
name: dermal papilla
-def: "A mesodermal signaling center of the hair follicle consisting of closely packed specialized mesenchymal fibroblasts. Framed by the enlarged bulb matrix in anagen." [http://dx.doi.org/10.1016/j.cub.2008.12.005]
+def: "A mesodermal signaling center of the hair follicle consisting of closely packed specialized mesenchymal fibroblasts. Framed by the enlarged bulb matrix in anagen." [https://doi.org/10.1016/j.cub.2008.12.005]
subset: pheno_slim
synonym: "dermal papilla cell" RELATED [BTO:0001858]
synonym: "dermal papillae" EXACT PLURAL []
@@ -7347,7 +7347,7 @@
subset: pheno_slim
subset: uberon_slim
subset: vertebrate_core
-synonym: "entoderm" RELATED DEPRECATED [http://dx.doi.org/10.5962/bhl.title.1013]
+synonym: "entoderm" RELATED DEPRECATED [https://doi.org/10.5962/bhl.title.1013]
xref: AAO:0000139
xref: BILA:0000038
xref: BTO:0000800
@@ -7900,7 +7900,7 @@
id: UBERON:0000948
name: heart
def: "A myogenic muscular circulatory organ found in the vertebrate cardiovascular system composed of chambers of cardiac muscle. It is the primary circulatory organ." [http://en.wikipedia.org/wiki/Heart, http://orcid.org/0000-0002-6601-2165]
-comment: Taxon notes:" the ascidian tube-like heart lacks chambers....The ascidian heart is formed after metamorphosis as a simple tube-like structure with a single-layered myoepithelium that is continuous with a single-layered pericar- dial wall. It lacks chambers and endocardium.... The innovation of the chambered heart was a key event in vertebrate evolution, because the chambered heart generates one-way blood flow with high pressure, a critical requirement for the efficient blood supply of large-body vertebrates... all extant vertebrates have hearts with two or more chambers (Moorman and Christoffels 2003)" http://dx.doi.org/10.1101/gad.1485706
+comment: Taxon notes:" the ascidian tube-like heart lacks chambers....The ascidian heart is formed after metamorphosis as a simple tube-like structure with a single-layered myoepithelium that is continuous with a single-layered pericar- dial wall. It lacks chambers and endocardium.... The innovation of the chambered heart was a key event in vertebrate evolution, because the chambered heart generates one-way blood flow with high pressure, a critical requirement for the efficient blood supply of large-body vertebrates... all extant vertebrates have hearts with two or more chambers (Moorman and Christoffels 2003)" https://doi.org/10.1101/gad.1485706
subset: efo_slim
subset: major_organ
subset: organ_slim
@@ -9652,7 +9652,7 @@
[Term]
id: UBERON:0001008
name: renal system
-def: "The renal system in an anatomical system that maintains fluid balance and contributes to electrolyte balance, acid/base balance, and disposal of nitrogenous waste products.." [GO:0072001, http://dx.doi.org/10.1371/journal.pone.0099864]
+def: "The renal system in an anatomical system that maintains fluid balance and contributes to electrolyte balance, acid/base balance, and disposal of nitrogenous waste products.." [GO:0072001, https://doi.org/10.1371/journal.pone.0099864]
subset: efo_slim
subset: pheno_slim
subset: uberon_slim
@@ -13718,7 +13718,7 @@
[Term]
id: UBERON:0001173
name: biliary tree
-def: "A complex network of conduits that begins with the canals of Hering (intralobar bile duct) and progressively merges into a system of interlobular, septal, and major ducts which then coalesce to form the extrahepatic bile ducts, which finally deliver bile to the intestine, and in some species to the gallbladder." [http://dx.doi.org/10.1002/ar.20664]
+def: "A complex network of conduits that begins with the canals of Hering (intralobar bile duct) and progressively merges into a system of interlobular, septal, and major ducts which then coalesce to form the extrahepatic bile ducts, which finally deliver bile to the intestine, and in some species to the gallbladder." [https://doi.org/10.1002/ar.20664]
comment: The path in many species is as follows: Bile canaliculi -> Canals of Hering (intralobar bile duct) -> interlobular bile ducts -> intrahepatic bile ducts -> left and right hepatic ducts merge to form -> common hepatic duct *exits liver* and joins -> cystic duct (from gall bladder) forming -> common bile duct -> joins with pancreatic duct -> forming ampulla of Vater -> enters duodenum [WP]
subset: organ_slim
subset: pheno_slim
@@ -14920,10 +14920,9 @@
xref: UMLS:C0227666 {source="ncithesaurus:Renal_Pelvis"}
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004111 ! anatomical conduit
-is_a: UBERON:0004120 ! mesoderm-derived structure
disjoint_from: UBERON:0002355 ! pelvic region of trunk
-relationship: part_of UBERON:0000056 {source="FMA"} ! ureter
relationship: part_of UBERON:0002113 {source="MA"} ! kidney
+relationship: part_of UBERON:0036295 ! renal pelvis/ureter
[Term]
id: UBERON:0001225
@@ -14966,7 +14965,6 @@
xref: http://www.snomedbrowser.com/Codes/Details/1106008
xref: MA:0001644
xref: Major:calyx
-is_a: UBERON:0003475 ! ureteric vein
is_a: UBERON:0006517 ! kidney calyx
is_a: UBERON:0013126 ! vein of abdomen
is_a: UBERON:0014401 ! renal venous blood vessel
@@ -14985,7 +14983,6 @@
xref: http://www.snomedbrowser.com/Codes/Details/26293004
xref: MA:0001645
xref: Minor:calyx
-is_a: UBERON:0003475 ! ureteric vein
is_a: UBERON:0006517 ! kidney calyx
is_a: UBERON:0013126 ! vein of abdomen
is_a: UBERON:0014401 ! renal venous blood vessel
@@ -15009,7 +15006,6 @@
xref: Renal:papilla
xref: UMLS:C0022666 {source="ncithesaurus:Renal_Papilla"}
is_a: UBERON:0000064 ! organ part
-is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0001224 ! renal pelvis
relationship: part_of UBERON:0001294 ! inner medulla of kidney
@@ -15641,7 +15637,7 @@
xref: Red:pulp
xref: UMLS:C0229687 {source="ncithesaurus:Splenic_Red_Pulp"}
is_a: UBERON:1000023 ! spleen pulp
-relationship: present_in_taxon NCBITaxon:7955 {source="http://dx.doi.org/10.1177/0192623311409597"}
+relationship: present_in_taxon NCBITaxon:7955 {source="https://doi.org/10.1177/0192623311409597"}
[Term]
id: UBERON:0001251
@@ -16750,7 +16746,7 @@
[Term]
id: UBERON:0001293
name: outer medulla of kidney
-def: "The renal outer medulla is the region of the kidney that lies between the renal cortex and the renal inner medulla[GO]." [GOC:mtg_kidney_jan10, http://dx.doi.org/10.1371/journal.pone.0099864]
+def: "The renal outer medulla is the region of the kidney that lies between the renal cortex and the renal inner medulla[GO]." [GOC:mtg_kidney_jan10, https://doi.org/10.1371/journal.pone.0099864]
subset: pheno_slim
synonym: "kidney outer medulla" RELATED [BTO:0001746]
synonym: "outer renal medulla" EXACT []
@@ -21029,7 +21025,7 @@
intersection_of: UBERON:0000055 ! vessel
intersection_of: part_of UBERON:0004536 ! lymph vasculature
disjoint_from: UBERON:0001981 ! blood vessel
-relationship: dubious_for_taxon NCBITaxon:8342 {source="http://dx.doi.org/10.1152/japplphysiol.00201.2013"}
+relationship: dubious_for_taxon NCBITaxon:8342 {source="https://doi.org/10.1152/japplphysiol.00201.2013"}
relationship: part_of UBERON:0004536 ! lymph vasculature
[Term]
@@ -23674,7 +23670,7 @@
[Term]
id: UBERON:0001597
name: masseter muscle
-def: "Pharyngeal arch 1 muscle that participates in oral/pharyngeal behaviors, is innervated by masseteric nerve branches of the trigeminal nerve (CN V), and attaches to mandible and zygomatic arch." [http://dx.doi.org/10.1093/icb/icr067, MFMO:0000075]
+def: "Pharyngeal arch 1 muscle that participates in oral/pharyngeal behaviors, is innervated by masseteric nerve branches of the trigeminal nerve (CN V), and attaches to mandible and zygomatic arch." [https://doi.org/10.1093/icb/icr067, MFMO:0000075]
subset: efo_slim
subset: feed_aligned
subset: pheno_slim
@@ -26040,7 +26036,7 @@
[Term]
id: UBERON:0001687
name: stapes bone
-def: "The stapes or stirrup is the stirrup-shaped small bone or ossicle in the middle ear which is attached to the incus laterally and to the fenestra ovalis, the 'oval window' medially. The oval window is adjacent to the vestibule of the inner ear. The stapes is the smallest and lightest bone in the human body. The stapes transmits the sound vibrations from the incus to the membrane of the inner ear inside the fenestra ovalis. The stapes is also stabilized by the stapedius muscle, which is innervated by the facial nerve. In non-mammalian vertebrates, the bone homologous to the stapes is usually called the columella; however, in reptiles, either term may be used[WP,unvetted]." [http://dx.doi.org/10.1111/j.1469-7580.2005.00441.x, http://en.wikipedia.org/wiki/Stapes]
+def: "The stapes or stirrup is the stirrup-shaped small bone or ossicle in the middle ear which is attached to the incus laterally and to the fenestra ovalis, the 'oval window' medially. The oval window is adjacent to the vestibule of the inner ear. The stapes is the smallest and lightest bone in the human body. The stapes transmits the sound vibrations from the incus to the membrane of the inner ear inside the fenestra ovalis. The stapes is also stabilized by the stapedius muscle, which is innervated by the facial nerve. In non-mammalian vertebrates, the bone homologous to the stapes is usually called the columella; however, in reptiles, either term may be used[WP,unvetted]." [http://en.wikipedia.org/wiki/Stapes, https://doi.org/10.1111/j.1469-7580.2005.00441.x]
subset: pheno_slim
subset: uberon_slim
synonym: "columella" RELATED SENSU [http://en.wikipedia.org/wiki/Stapes]
@@ -27497,7 +27493,7 @@
[Term]
id: UBERON:0001736
name: submandibular gland
-def: "Either of the paired compound tubuloalveolar (aka tubuloacinar) major salivary glands composed of both serous and mucous secretory cells and situated beneath the mandible." [http://dx.doi.org/10.1111/j.1432-0436.2006.00088.x, MGI:anna]
+def: "Either of the paired compound tubuloalveolar (aka tubuloacinar) major salivary glands composed of both serous and mucous secretory cells and situated beneath the mandible." [https://doi.org/10.1111/j.1432-0436.2006.00088.x, MGI:anna]
comment: lobular, sexually dimorphic in mouse
subset: efo_slim
subset: pheno_slim
@@ -28350,7 +28346,7 @@
is_a: UBERON:0004923 {source="FMA"} ! organ component layer
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0001801 ! anterior segment of eyeball
-relationship: present_in_taxon NCBITaxon:7955 {source="http://dx.doi.org/10.1177/0192623311409597"}
+relationship: present_in_taxon NCBITaxon:7955 {source="https://doi.org/10.1177/0192623311409597"}
[Term]
id: UBERON:0001769
@@ -29479,7 +29475,7 @@
is_a: UBERON:0010313 ! neural crest-derived structure
intersection_of: UBERON:0000045 ! ganglion
intersection_of: part_of UBERON:0000013 ! sympathetic nervous system
-relationship: develops_from UBERON:0003083 {source="http://dx.doi.org/10.1101/gr.157586.113", source="ISBN10:0073040584"} ! trunk neural crest
+relationship: develops_from UBERON:0003083 {source="https://doi.org/10.1101/gr.157586.113", source="ISBN10:0073040584"} ! trunk neural crest
relationship: part_of UBERON:0000013 ! sympathetic nervous system
[Term]
@@ -31683,6 +31679,7 @@
is_a: UBERON:0003947 ! brain ventricle/choroid plexus
is_a: UBERON:0005629 ! vascular plexus
is_a: UBERON:0006876 ! vasculature of organ
+is_a: UBERON:0036303 ! vasculature of central nervous system
disjoint_from: UBERON:0005336 ! capillary layer of choroid
disjoint_from: UBERON:0010078 ! optic choroid vascular plexus
relationship: part_of UBERON:0004086 ! brain ventricle
@@ -34487,7 +34484,7 @@
[Term]
id: UBERON:0001970
name: bile
-def: "vital aqueous secretion of the liver that is formed by hepatocytes and modified down stream by absorptive and secretory properties of the bile duct epithelium." [http://dx.doi.org/10.1002/cphy.c120027, http://en.wikipedia.org/wiki/Bile]
+def: "vital aqueous secretion of the liver that is formed by hepatocytes and modified down stream by absorptive and secretory properties of the bile duct epithelium." [http://en.wikipedia.org/wiki/Bile, https://doi.org/10.1002/cphy.c120027]
subset: pheno_slim
subset: uberon_slim
synonym: "fel" RELATED [BTO:0000121]
@@ -36195,7 +36192,7 @@
[Term]
id: UBERON:0002033
name: arrector muscle of hair
-def: "A tiny smooth muscle that connects the hair follicle with the dermis." [http://dx.doi.org/10.1016/j.cub.2008.12.005]
+def: "A tiny smooth muscle that connects the hair follicle with the dermis." [https://doi.org/10.1016/j.cub.2008.12.005]
subset: pheno_slim
subset: uberon_slim
synonym: "arectores pilorum" RELATED [BTO:0005132]
@@ -37345,12 +37342,12 @@
is_a: UBERON:0036150 ! skin appendage follicle
relationship: develops_from UBERON:0005086 ! hair follicle placode
relationship: part_of UBERON:0001003 {source="FMA"} ! skin epidermis
-relationship: part_of UBERON:0011932 {source="http://dx.doi.org/10.1016/j.cub.2008.12.005"} ! pilosebaceous unit
+relationship: part_of UBERON:0011932 {source="https://doi.org/10.1016/j.cub.2008.12.005"} ! pilosebaceous unit
[Term]
id: UBERON:0002074
name: hair shaft
-def: "The main part of the hair which is composed of trichocytes and is divided into the cortex and medulla." [http://dx.doi.org/10.1016/j.cub.2008.12.005]
+def: "The main part of the hair which is composed of trichocytes and is divided into the cortex and medulla." [https://doi.org/10.1016/j.cub.2008.12.005]
subset: pheno_slim
synonym: "scapus pili" RELATED [BTO:0004672]
synonym: "shaft of hair" EXACT []
@@ -37365,7 +37362,7 @@
is_a: UBERON:0000021 ! cutaneous appendage
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
-relationship: part_of UBERON:0001037 {source="http://dx.doi.org/10.1016/j.cub.2008.12.005"} ! strand of hair
+relationship: part_of UBERON:0001037 {source="https://doi.org/10.1016/j.cub.2008.12.005"} ! strand of hair
[Term]
id: UBERON:0002075
@@ -38726,7 +38723,7 @@
intersection_of: UBERON:0001851 ! cortex
intersection_of: part_of UBERON:0002370 ! thymus
relationship: part_of UBERON:0002370 ! thymus
-relationship: present_in_taxon NCBITaxon:7955 {source="http://dx.doi.org/10.1177/0192623311409597"}
+relationship: present_in_taxon NCBITaxon:7955 {source="https://doi.org/10.1177/0192623311409597"}
[Term]
id: UBERON:0002124
@@ -38752,7 +38749,7 @@
intersection_of: UBERON:0000958 ! medulla of organ
intersection_of: part_of UBERON:0002370 ! thymus
relationship: part_of UBERON:0002370 ! thymus
-relationship: present_in_taxon NCBITaxon:7955 {source="http://dx.doi.org/10.1177/0192623311409597"}
+relationship: present_in_taxon NCBITaxon:7955 {source="https://doi.org/10.1177/0192623311409597"}
[Term]
id: UBERON:0002125
@@ -39184,7 +39181,7 @@
id: UBERON:0002139
name: subcommissural organ
def: "The subcommissural organ is a circumventricular organ consisting of ependymal cells which secrete SCO-spondin[WP,partially vetted]." [http://en.wikipedia.org/wiki/Subcommissural_organ, http://www.ncbi.nlm.nih.gov/pubmed/9579598]
-comment: Occurs throughout the vertebartes [PMID:9579598, http://dx.doi.org/10.1002/ar.1091260210]. First appears in hagfish(Olsson). In many species, including the human, it reaches its full development during embryonic life[PMID:9579598]. During the course of phyletic evolution, one notes various changes. Indeed, in lower vertebrates, the SCO presents a greater degree of enzyme activity than the ependyma while in birds the ependyma demonstrates a more intense activity than the SCO[PMID:479574] Sometimes preceded by flexural organ[doi:10.1007/BF00303086]
+comment: Occurs throughout the vertebartes [PMID:9579598, https://doi.org/10.1002/ar.1091260210]. First appears in hagfish(Olsson). In many species, including the human, it reaches its full development during embryonic life[PMID:9579598]. During the course of phyletic evolution, one notes various changes. Indeed, in lower vertebrates, the SCO presents a greater degree of enzyme activity than the ependyma while in birds the ependyma demonstrates a more intense activity than the SCO[PMID:479574] Sometimes preceded by flexural organ[doi:10.1007/BF00303086]
subset: pheno_slim
subset: uberon_slim
subset: vertebrate_core
@@ -44125,7 +44122,7 @@
[Term]
id: UBERON:0002329
name: somite
-def: "Somites are spheres of epithelial cells that form sequentially along the anterior-posterior axis of the embryo through mesenchymal to epithelial transition of the presomitic mesoderm." [http://dx.doi.org/10.1111/j.1439-0426.2012.01987.x, http://en.wikipedia.org/wiki/Somite]
+def: "Somites are spheres of epithelial cells that form sequentially along the anterior-posterior axis of the embryo through mesenchymal to epithelial transition of the presomitic mesoderm." [http://en.wikipedia.org/wiki/Somite, https://doi.org/10.1111/j.1439-0426.2012.01987.x]
comment: When the somite becomes segmented from the segmental plate, it is composed of an epithelial sac enclosing mesenchymal somitocoel cells. Thereafter the somite differentiates into two parts, the ventro-medial mesenchymal sclerotome and the dorso-lateral epithelial dermomyotome. This change in the epithelial somite depends on surrounding tissue [PMID:15906248]
subset: pheno_slim
subset: uberon_slim
@@ -46454,7 +46451,7 @@
synonym: "lamina parietalis pericardii" EXACT LATIN [FMA:9870, FMA:TA]
synonym: "parietal layer of serous pericardium" EXACT []
synonym: "parietal pericardium" EXACT [VHOG:0000537]
-synonym: "pericardial sac" RELATED INCONSISTENT [http://dx.doi.org/10.5962/bhl.title.1013]
+synonym: "pericardial sac" RELATED INCONSISTENT [https://doi.org/10.5962/bhl.title.1013]
xref: EHDAA:3422
xref: EHDAA:5378
xref: EMAPA:19031
@@ -48571,7 +48568,7 @@
xref: http://en.wikipedia.org/wiki/Bone_marrow_of_ovaryry_cavity
xref: MA:0002783
is_a: UBERON:0002553 ! anatomical cavity
-relationship: dubious_for_taxon NCBITaxon:7955 {source="http://dx.doi.org/10.1177/0192623311409597"}
+relationship: dubious_for_taxon NCBITaxon:7955 {source="https://doi.org/10.1177/0192623311409597"}
relationship: part_of UBERON:0001439 ! compact bone tissue
[Term]
@@ -50199,7 +50196,7 @@
xref: FMA:75007
is_a: UBERON:0002558 ! organ cavity
relationship: part_of UBERON:0001017 ! central nervous system
-relationship: present_in_taxon NCBITaxon:569425 {source="http://dx.doi.org/10.1186/s12983-014-0089-2"}
+relationship: present_in_taxon NCBITaxon:569425 {source="https://doi.org/10.1186/s12983-014-0089-2"}
[Term]
id: UBERON:0002562
@@ -52432,7 +52429,7 @@
xref: http://linkedlifedata.com/resource/umls/id/C0228330
xref: UMLS:C0228330 {source="NIFSTD:birnlex_1283"}
is_a: UBERON:0019269 ! gray matter of diencephalon
-relationship: part_of UBERON:0002739 {source="FMA"} ! medial dorsal nucleus of thalamus
+relationship: part_of UBERON:0002739 {source="NIFSTD"} ! medial dorsal nucleus of thalamus
[Term]
id: UBERON:0002655
@@ -79797,7 +79794,7 @@
xref: EMAPA:28120
xref: FMA:262022
xref: MA:0002631
-is_a: UBERON:0009919 ! ureter smooth muscle
+is_a: UBERON:0001135 ! smooth muscle tissue
intersection_of: UBERON:0001135 ! smooth muscle tissue
intersection_of: part_of UBERON:0001224 ! renal pelvis
relationship: part_of UBERON:0001224 ! renal pelvis
@@ -82336,7 +82333,7 @@
[Term]
id: UBERON:0004368
name: Reichert's cartilage
-def: "A continuous cartilaginous formation in mesenchyme of the second pharyngeal arch in the embryo. The longer cranial or styloid segment is continuous with the otic capsule; its inferior end is angulated and is situated very close to the oropharynx. The smaller caudal segment is in contact with the body and greater horn of the hyoid cartilaginous structure" [http://dx.doi.org/10.1111/j.1469-7580.2006.00524.x, MP:0004916]
+def: "A continuous cartilaginous formation in mesenchyme of the second pharyngeal arch in the embryo. The longer cranial or styloid segment is continuous with the otic capsule; its inferior end is angulated and is situated very close to the oropharynx. The smaller caudal segment is in contact with the body and greater horn of the hyoid cartilaginous structure" [https://doi.org/10.1111/j.1469-7580.2006.00524.x, MP:0004916]
subset: pheno_slim
synonym: "hyaloid cartilage" EXACT [MP:0004916]
synonym: "hyoid cartilage" EXACT [EHDAA2:0000793]
@@ -82357,7 +82354,7 @@
[Term]
id: UBERON:0004369
name: Reichert's membrane
-def: "An nonvascular extraembryonic basement membrane that forms on the inner surface of the trophectoderm during placenta morphogenesis and is secreted by the distal parietal endoderm; required for the maternofetal exchange of nutrients and is important for the postgastrulation development[MP]. a thick multilayered basement membrane between the parietal endoderm cells and the trophoblast cells" [http://dx.doi.org/10.1007/BF00184752, MP:0003954]
+def: "An nonvascular extraembryonic basement membrane that forms on the inner surface of the trophectoderm during placenta morphogenesis and is secreted by the distal parietal endoderm; required for the maternofetal exchange of nutrients and is important for the postgastrulation development[MP]. a thick multilayered basement membrane between the parietal endoderm cells and the trophoblast cells" [https://doi.org/10.1007/BF00184752, MP:0003954]
subset: pheno_slim
xref: EMAPA:16057
xref: FMA:276826
@@ -87531,7 +87528,7 @@
[Term]
id: UBERON:0004731
name: neuromere
-def: "A transverse unitary subdivision of the neural tube that shares a common dorsoventral structure (floor, basal, alar, and roof plates), but each having differential molecular identities and fates; they comprise the secondary prosencephalon, diencephalon (prosomeres), the midbrain (mesomeres), and the hindbrain (rhombomeres)." [http://dx.doi.org/10.1016/j.tins.2013.06.004, https://github.com/obophenotype/uberon/issues/318]
+def: "A transverse unitary subdivision of the neural tube that shares a common dorsoventral structure (floor, basal, alar, and roof plates), but each having differential molecular identities and fates; they comprise the secondary prosencephalon, diencephalon (prosomeres), the midbrain (mesomeres), and the hindbrain (rhombomeres)." [https://doi.org/10.1016/j.tins.2013.06.004, https://github.com/obophenotype/uberon/issues/318]
subset: pheno_slim
synonym: "neural metamere" RELATED []
synonym: "neural segment" RELATED []
@@ -87667,7 +87664,7 @@
id: UBERON:0004739
name: pronephric glomerulus
alt_id: UBERON:0004191
-def: "The glomus forms from the splanchnic intermediate mesoderm and is the vascularized filtration unit, filtering the blood before it enters the tubules. The glomus is external to the nephron and extends over more than one body segment." [GO:0072013, GOC:mtg_kidney_jan10, http://dx.doi.org/10.1371/journal.pone.0099864, http://www.ncbi.nlm.nih.gov/pubmed/10572058, http://www.ncbi.nlm.nih.gov/pubmed/15647339, http://www.ncbi.nlm.nih.gov/pubmed/9268568, XAO:0000318]
+def: "The glomus forms from the splanchnic intermediate mesoderm and is the vascularized filtration unit, filtering the blood before it enters the tubules. The glomus is external to the nephron and extends over more than one body segment." [GO:0072013, GOC:mtg_kidney_jan10, http://www.ncbi.nlm.nih.gov/pubmed/10572058, http://www.ncbi.nlm.nih.gov/pubmed/15647339, http://www.ncbi.nlm.nih.gov/pubmed/9268568, https://doi.org/10.1371/journal.pone.0099864, XAO:0000318]
synonym: "corpuscle" RELATED [XAO:0000318]
synonym: "glomera" RELATED PLURAL [XAO:0000318]
synonym: "glomerulus of pronephros" EXACT []
@@ -88570,7 +88567,7 @@
xref: MA:0002632
xref: NCIT:C54556
xref: UMLS:C1709899 {source="ncithesaurus:Renal_Pelvis_Urothelium"}
-is_a: UBERON:0001254 ! urothelium of ureter
+is_a: UBERON:0000365 ! urothelium
is_a: UBERON:0004819 ! kidney epithelium
intersection_of: UBERON:0000365 ! urothelium
intersection_of: part_of UBERON:0001224 ! renal pelvis
@@ -89658,6 +89655,7 @@
xref: MESH:D012171
xref: XAO:0004153
is_a: UBERON:0002203 ! vasculature of eye
+is_a: UBERON:0036302 ! vasculature of central nervous system plus retina
intersection_of: UBERON:0002049 ! vasculature
intersection_of: part_of UBERON:0000966 ! retina
relationship: part_of UBERON:0000966 ! retina
@@ -91692,7 +91690,7 @@
synonym: "tunica mucosa pelvis renalis" EXACT LATIN [FMA:17931, FMA:TA]
xref: FMA:17931
xref: http://www.snomedbrowser.com/Codes/Details/243482002
-is_a: UBERON:0004980 ! mucosa of ureter
+is_a: UBERON:0000344 ! mucosa
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0001224 ! renal pelvis
relationship: part_of UBERON:0001224 ! renal pelvis
@@ -93222,11 +93220,11 @@
[Term]
id: UBERON:0005086
name: hair follicle placode
-def: "A bud-like thickening in the epidermis consisting of elongated keratinocytes, which at the distal end are in touch with numerous aggregated specialized dermal fibroblasts, the dermal condensate." [http://dx.doi.org/10.1016/j.cub.2008.12.005]
+def: "A bud-like thickening in the epidermis consisting of elongated keratinocytes, which at the distal end are in touch with numerous aggregated specialized dermal fibroblasts, the dermal condensate." [https://doi.org/10.1016/j.cub.2008.12.005]
synonym: "hair gem" RELATED [ISBN:9780878932504]
-synonym: "hair germ" RELATED [http://dx.doi.org/10.1016/j.cub.2008.12.005]
+synonym: "hair germ" RELATED [https://doi.org/10.1016/j.cub.2008.12.005]
synonym: "hair peg" RELATED [ISBN:9780878932504]
-synonym: "hair placode" EXACT [http://dx.doi.org/10.1016/j.cub.2008.12.005]
+synonym: "hair placode" EXACT [https://doi.org/10.1016/j.cub.2008.12.005]
synonym: "vibrissa placode" NARROW []
xref: EMAPA:36479
is_a: UBERON:0011817 ! skin appendage placode
@@ -93481,7 +93479,7 @@
is_a: UBERON:0004120 ! mesoderm-derived structure
intersection_of: UBERON:0001285 ! nephron
intersection_of: part_of UBERON:0000081 ! metanephros
-relationship: develops_from UBERON:0003220 {source="Wikipedia"} ! metanephric mesenchyme
+relationship: develops_from UBERON:0003220 {source="http://en.wikipedia.org/wiki/Nephron"} ! metanephric mesenchyme
relationship: develops_from UBERON:0010535 ! primitive metanephric nephron
relationship: immediate_transformation_of UBERON:0010535 {source="Bgee:AN"} ! primitive metanephric nephron
relationship: part_of UBERON:0000081 ! metanephros
@@ -94564,7 +94562,7 @@
[Term]
id: UBERON:0005215
name: kidney interstitium
-def: "The interstitial compartment of the kidney, comprising the extravascular intertubular spaces of the renal parenchyma, with their attendant cellular elements and extracellular substances, bounded on all sides by epithelial and vascular basement membranes." [http://dx.doi.org/10.1038/ki.1991.49, http://orcid.org/0000-0002-6601-2165, http://www.ncbi.nlm.nih.gov/pubmed/18575881]
+def: "The interstitial compartment of the kidney, comprising the extravascular intertubular spaces of the renal parenchyma, with their attendant cellular elements and extracellular substances, bounded on all sides by epithelial and vascular basement membranes." [http://orcid.org/0000-0002-6601-2165, http://www.ncbi.nlm.nih.gov/pubmed/18575881, https://doi.org/10.1038/ki.1991.49]
subset: pheno_slim
synonym: "interstitial tissue of kidney" EXACT []
synonym: "kidney interstitium group" RELATED [EMAPA:28518]
@@ -94937,6 +94935,7 @@
synonym: "metanephros pelvis" EXACT [VHOG:0000945]
xref: VHOG:0000945
is_a: UBERON:0001224 ! renal pelvis
+is_a: UBERON:0004120 ! mesoderm-derived structure
intersection_of: UBERON:0001224 ! renal pelvis
intersection_of: part_of UBERON:0000081 ! metanephros
relationship: part_of UBERON:0000081 ! metanephros
@@ -102832,7 +102831,7 @@
name: prepollex
def: "A rudimentary additional digit-like structure on the preaxial side of the thumb of certain amphibians and mammals[dictionary.com]." [http://dictionary.com]
comment: not homologous to digit 1 of tetrapods. Note we treat the prepollex as distinct from the digits, which are not part of the carpus
-synonym: "pseudothumb" RELATED [http://dx.doi.org/10.1098/rsbl.2009.1038]
+synonym: "pseudothumb" RELATED [https://doi.org/10.1098/rsbl.2009.1038]
is_a: UBERON:0005881 ! autopodial extension
relationship: part_of UBERON:0004452 ! carpal region
@@ -103165,6 +103164,7 @@
def: "An urothelium of ureter that is part of a mucosa of major calyx." [OBOL:automatic]
synonym: "urothelium of major calyx" EXACT [OBOL:automatic]
xref: FMA:263266
+is_a: UBERON:0001254 ! urothelium of ureter
is_a: UBERON:0003350 ! epithelium of mucosa
is_a: UBERON:0004788 ! kidney pelvis urothelium
intersection_of: UBERON:0001254 ! urothelium of ureter
@@ -103309,7 +103309,7 @@
[Term]
id: UBERON:0005932
name: bulb of hair follicle
-def: "Thickening of the proximal end of the hair follicle. Contains rapidly proliferating, rather undifferentiated matrix cells (transient amplifying cells), melanocytes and outer root sheath cells." [http://dx.doi.org/10.1016/j.cub.2008.12.005]
+def: "Thickening of the proximal end of the hair follicle. Contains rapidly proliferating, rather undifferentiated matrix cells (transient amplifying cells), melanocytes and outer root sheath cells." [https://doi.org/10.1016/j.cub.2008.12.005]
subset: pheno_slim
synonym: "coat hair bulb" NARROW SENSU [MA:0000161]
synonym: "hair bulb" EXACT [FMA:70666]
@@ -103357,7 +103357,7 @@
[Term]
id: UBERON:0005942
name: hair outer root sheath
-def: "A stratified epithelium that surrounds the hair follicle that merges proximally with the basal layer of the interfollicular epidermis and distally with the hair bulb." [http://dx.doi.org/10.1016/j.cub.2008.12.005, http://www.keratin.com/aa/aa022.shtml, https://github.com/obophenotype/mouse-anatomy-ontology/issues/56]
+def: "A stratified epithelium that surrounds the hair follicle that merges proximally with the basal layer of the interfollicular epidermis and distally with the hair bulb." [http://www.keratin.com/aa/aa022.shtml, https://doi.org/10.1016/j.cub.2008.12.005, https://github.com/obophenotype/mouse-anatomy-ontology/issues/56]
subset: pheno_slim
synonym: "external root sheath of hair follicle" EXACT [FMA:70943]
synonym: "hair follicle outer root sheath" EXACT [BTO:0003969]
@@ -103534,7 +103534,7 @@
[Term]
id: UBERON:0005968
name: infundibulum of hair follicle
-def: "The portion of the hair follicle from the entrance of the sebaceous gland duct to the epidermal surface opening." [http://dx.doi.org/10.1016/j.cub.2008.12.005, https://github.com/obophenotype/mouse-anatomy-ontology/issues/76, ISBN10:0123813611]
+def: "The portion of the hair follicle from the entrance of the sebaceous gland duct to the epidermal surface opening." [https://doi.org/10.1016/j.cub.2008.12.005, https://github.com/obophenotype/mouse-anatomy-ontology/issues/76, ISBN10:0123813611]
subset: pheno_slim
synonym: "dermal piliary canal" EXACT [FMA:70722]
synonym: "hair follicle infundibulum" EXACT [FMA:70722]
@@ -103658,7 +103658,7 @@
name: hair follicle bulge
def: "The area located in the bottom of the permanent portion of a resting (telogen) hair follicle where the cells of the external root sheath of the hair follicle are contiguous with the basal layer of the epidermis; this portion of the follicle is involved in the generation of a new hair at the onset of the hair growth cycle (anagen) and contains the hair follicle stem cells" [MP:0009759]
subset: pheno_slim
-synonym: "bulge" NARROW [http://dx.doi.org/10.1016/j.cub.2008.12.005]
+synonym: "bulge" NARROW [https://doi.org/10.1016/j.cub.2008.12.005]
synonym: "bulge of hair follicle" EXACT [FMA:70735]
xref: BTO:0004904
xref: EMAPA:37876 {source="MA:th"}
@@ -104125,7 +104125,7 @@
[Term]
id: UBERON:0006005
name: hair follicle isthmus
-def: "The middle part of the hair follicle that extends from the sebaceous duct to the bulge" [http://dx.doi.org/10.1016/j.cub.2008.12.005, MP:0010694]
+def: "The middle part of the hair follicle that extends from the sebaceous duct to the bulge" [https://doi.org/10.1016/j.cub.2008.12.005, MP:0010694]
subset: pheno_slim
synonym: "isthmus of hair follicle" EXACT [FMA:70723]
xref: EMAPA:37877 {source="MA:th"}
@@ -105907,7 +105907,7 @@
[Term]
id: UBERON:0006170
name: mesonephric capsule
-def: "The mesonephric capsule is the tough fibrous layer surrounding the mesonephros, covered in a thick layer of perinephric adipose tissue." [GO:0061285, GOC:mtg_kidney_jan10, http://dx.doi.org/10.1371/journal.pone.0099864]
+def: "The mesonephric capsule is the tough fibrous layer surrounding the mesonephros, covered in a thick layer of perinephric adipose tissue." [GO:0061285, GOC:mtg_kidney_jan10, https://doi.org/10.1371/journal.pone.0099864]
is_a: UBERON:0002015 ! kidney capsule
is_a: UBERON:0004120 ! mesoderm-derived structure
intersection_of: UBERON:0002015 ! kidney capsule
@@ -107408,7 +107408,7 @@
name: stapes pre-cartilage condensation
def: "A stapes endochondral element that is composed primarily of a pre-cartilage condensation." [OBOL:automatic]
subset: emapa_ehdaa2
-synonym: "stapedial anlage" EXACT [http://dx.doi.org/10.1111/j.1469-7580.2005.00441.x]
+synonym: "stapedial anlage" EXACT [https://doi.org/10.1111/j.1469-7580.2005.00441.x]
xref: EHDAA:5699
xref: EHDAA2:0001910
xref: EMAPA:17827
@@ -107415,7 +107415,7 @@
xref: VHOG:0000956
is_a: UBERON:0015016 ! stapes endochondral element
is_a: UBERON:0035132 ! auditory ossicle pre-cartilage element
-relationship: develops_from UBERON:0005689 {notes="cranial end", source="EHDAA2", source="http://dx.doi.org/10.1111/j.1469-7580.2005.00441.x"} ! 2nd arch mesenchyme
+relationship: develops_from UBERON:0005689 {notes="cranial end", source="EHDAA2", source="https://doi.org/10.1111/j.1469-7580.2005.00441.x"} ! 2nd arch mesenchyme
relationship: part_of UBERON:0001686 {source="EHDAA2"} ! auditory ossicle bone
[Term]
@@ -108165,7 +108165,6 @@
subset: pheno_slim
xref: EMAPA:28083
xref: MA:0002618
-is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0005215 ! kidney interstitium
relationship: part_of UBERON:0001224 {source="MA"} ! renal pelvis
@@ -109427,7 +109426,6 @@
xref: NCIT:C12927
xref: UMLS:C0022651 {source="ncithesaurus:Renal_Calyx"}
is_a: UBERON:0000063 ! organ subunit
-is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0001224 ! renal pelvis
[Term]
@@ -111454,6 +111452,7 @@
def: "A vasculature that is part of a cerebellum." [OBOL:automatic]
xref: FMA:268519
is_a: UBERON:0006876 ! vasculature of organ
+is_a: UBERON:0036303 ! vasculature of central nervous system
intersection_of: UBERON:0002049 ! vasculature
intersection_of: part_of UBERON:0002037 ! cerebellum
relationship: part_of UBERON:0002037 ! cerebellum
@@ -113189,7 +113188,7 @@
[Term]
id: UBERON:0006856
name: interrenal gland
-def: "Structures in fishes homologous to the cortical tissue of the mammalian adrenal gland; they are in close proximity to or imbedded in the head kidney." [BTO:0000808, http://dx.doi.org/10.1242/dev.00427]
+def: "Structures in fishes homologous to the cortical tissue of the mammalian adrenal gland; they are in close proximity to or imbedded in the head kidney." [BTO:0000808, https://doi.org/10.1242/dev.00427]
subset: organ_slim
synonym: "interrenal" RELATED [http://dev.biologists.org/content/130/10/2107.full]
synonym: "interrenal bodies" RELATED []
@@ -114944,7 +114943,7 @@
[Term]
id: UBERON:0007132
name: head kidney
-def: "Teleost head kidney consists of fused bilateral lobes located in the anterior part of the kidney. It is analogous to the mammalian bone marrow and the primary site of definitive hematopoiesis[ZFA,modified]." [http://dx.doi.org/10.1242/dev.00427, ZFIN:ZDB-PUB-040923-1]
+def: "Teleost head kidney consists of fused bilateral lobes located in the anterior part of the kidney. It is analogous to the mammalian bone marrow and the primary site of definitive hematopoiesis[ZFA,modified]." [https://doi.org/10.1242/dev.00427, ZFIN:ZDB-PUB-040923-1]
subset: organ_slim
synonym: "anterior kidney" EXACT [ZFA:0000669]
synonym: "kidney marrow" EXACT [ZFA:0000669]
@@ -118553,7 +118552,7 @@
[Term]
id: UBERON:0007687
name: kidney field
-def: "region of the embryo into the area in which the kidney rudiment will develop." [GO:0072004, GOC:mtg_kidney_jan10, http://dx.doi.org/10.1371/journal.pone.0099864]
+def: "region of the embryo into the area in which the kidney rudiment will develop." [GO:0072004, GOC:mtg_kidney_jan10, https://doi.org/10.1371/journal.pone.0099864]
synonym: "kidney anlage" RELATED [GOC:mtg_kidney_jan10]
is_a: UBERON:0005291 ! embryonic tissue
is_a: UBERON:0006598 ! presumptive structure
@@ -124176,7 +124175,7 @@
xref: ZFA:0000243
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0035555 ! lateral line sense organ
-relationship: develops_from UBERON:0009128 {source="http://dx.doi.org/10.1038/ncomms1502"} ! lateral line placode
+relationship: develops_from UBERON:0009128 {source="https://doi.org/10.1038/ncomms1502"} ! lateral line placode
relationship: develops_from UBERON:2005227 ! protoneuromast
relationship: part_of UBERON:0010202 ! lateral line
relationship: transformation_of UBERON:2005227 {source="ZFA"} ! protoneuromast
@@ -125095,6 +125094,7 @@
xref: TAO:0000099
xref: ZFA:0000099
is_a: UBERON:0006876 ! vasculature of organ
+is_a: UBERON:0036303 ! vasculature of central nervous system
relationship: part_of UBERON:0000955 ! brain
[Term]
@@ -125806,7 +125806,6 @@
synonym: "papillary tips" EXACT PLURAL [KUPO:0001009]
xref: KUPO:0001009
is_a: UBERON:0000064 ! organ part
-is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0001228 {source="KUPO"} ! renal papilla
[Term]
@@ -127049,7 +127048,7 @@
[Term]
id: UBERON:0009551
name: distal segment of digit
-def: "A segment of a digit containing the distal phalanx, and overlapping the distal interphalangeal joint[CJM]. The digit tip is derived from multiple and distinct embryonic origins, and includes the distal bone with associated marrow cavity and haematopoietic cells, ventral (flexor) and dorsal (extensor) tendons, sweat glands with myoepithelial and luminal secreting cells and associated neurons for innervation, dermis with resident melanocytes and dendritic cells, mesenchyme with resident fibroblasts, skin epidermis with hair follicles, a nail organ composed of six specific parts (the root, nail bed, nail plate, eponychium (cuticle), perionychium and hyponychium)." [http://dx.doi.org/10.1038/nature10346]
+def: "A segment of a digit containing the distal phalanx, and overlapping the distal interphalangeal joint[CJM]. The digit tip is derived from multiple and distinct embryonic origins, and includes the distal bone with associated marrow cavity and haematopoietic cells, ventral (flexor) and dorsal (extensor) tendons, sweat glands with myoepithelial and luminal secreting cells and associated neurons for innervation, dermis with resident melanocytes and dendritic cells, mesenchyme with resident fibroblasts, skin epidermis with hair follicles, a nail organ composed of six specific parts (the root, nail bed, nail plate, eponychium (cuticle), perionychium and hyponychium)." [https://doi.org/10.1038/nature10346]
synonym: "digit tip" EXACT [https://orcid.org/0000-0002-6601-2165]
synonym: "distal digit segment" EXACT [https://orcid.org/0000-0002-6601-2165]
synonym: "tip of digit" EXACT [https://orcid.org/0000-0002-6601-2165]
@@ -127062,11 +127061,11 @@
alt_id: UBERON:0004093
def: "A segment of the manual digit containing the distal phalanx" [http://orcid.org/0000-0002-6601-2165]
subset: pheno_slim
-synonym: "finger digit tip" EXACT [http://dx.doi.org/10.1038/nature10346]
+synonym: "finger digit tip" EXACT [https://doi.org/10.1038/nature10346]
synonym: "finger distal segment" EXACT [https://orcid.org/0000-0002-6601-2165]
synonym: "finger tip" EXACT [https://orcid.org/0000-0002-6601-2165]
synonym: "fingertip" EXACT [HP:0001211]
-synonym: "forelimb digit tip" EXACT [http://dx.doi.org/10.1038/nature10346]
+synonym: "forelimb digit tip" EXACT [https://doi.org/10.1038/nature10346]
synonym: "tip of finger" EXACT []
xref: http://www.snomedbrowser.com/Codes/Details/312543003
xref: OpenCyc:Mx4rvVjpf5wpEbGdrcN5Y29ycA
@@ -127081,10 +127080,10 @@
name: distal segment of pedal digit
def: "A segment of the pedal digit containing the distal phalanx. Note this class represents a digit segment and thus includes tissues in addition to bone." [http://orcid.org/0000-0002-6601-2165]
synonym: "distalmost part of toe" RELATED [https://orcid.org/0000-0002-6601-2165]
-synonym: "hindlimb digit tip" EXACT [http://dx.doi.org/10.1038/nature10346]
+synonym: "hindlimb digit tip" EXACT [https://doi.org/10.1038/nature10346]
synonym: "P3 segment of pedal digit" RELATED [https://orcid.org/0000-0002-6601-2165]
synonym: "tip of toe" EXACT [https://orcid.org/0000-0002-6601-2165]
-synonym: "toe digit tip" EXACT [http://dx.doi.org/10.1038/nature10346]
+synonym: "toe digit tip" EXACT [https://doi.org/10.1038/nature10346]
synonym: "toe distal segment" EXACT [https://orcid.org/0000-0002-6601-2165]
is_a: UBERON:0005445 ! segment of pes
is_a: UBERON:0009551 ! distal segment of digit
@@ -128321,7 +128320,7 @@
[Term]
id: UBERON:0009671
name: nasal fin
-def: "The nasal fin is an epithelial seam that develops by fusion between the epithelial linings of the medial and lateral nasal swellings. Shortly after its formation the nasal fin regresses and is replaced by mesenchyme, with exception of its most posterior portion which remains as the bucconasal membrane." [http://dx.doi.org/10.1002/aja.1001500308]
+def: "The nasal fin is an epithelial seam that develops by fusion between the epithelial linings of the medial and lateral nasal swellings. Shortly after its formation the nasal fin regresses and is replaced by mesenchyme, with exception of its most posterior portion which remains as the bucconasal membrane." [https://doi.org/10.1002/aja.1001500308]
xref: EHDAA2:0004548
xref: FMA:295940
is_a: UBERON:0005384 ! nasal cavity epithelium
@@ -128641,13 +128640,13 @@
[Term]
id: UBERON:0009716
name: cupular organ
-def: "Epithelial sense organ containing the cupula housing a gelatinous material elongated from the basement of the organ toward the atrial cavity. The basement of the cupular organ consists of two cell types: sensory cells and support cell" [http://dx.doi.org/10.2108/zsj.27.842]
+def: "Epithelial sense organ containing the cupula housing a gelatinous material elongated from the basement of the organ toward the atrial cavity. The basement of the cupular organ consists of two cell types: sensory cells and support cell" [https://doi.org/10.2108/zsj.27.842]
is_a: UBERON:0000020 ! sense organ
[Term]
id: UBERON:0009717
name: coronal organ
-def: "Mechanoreceptor organ found in oral siphon of botryllid ascidians, made of hair cells, similar to the vertebrate octavolateralis system. A possible candidate of the vertebrate lateral line." [http://dx.doi.org/10.1002/jez.b.21013]
+def: "Mechanoreceptor organ found in oral siphon of botryllid ascidians, made of hair cells, similar to the vertebrate octavolateralis system. A possible candidate of the vertebrate lateral line." [https://doi.org/10.1002/jez.b.21013]
subset: organ_slim
xref: BSA:0000122
is_a: UBERON:0000020 ! sense organ
@@ -128656,7 +128655,7 @@
[Term]
id: UBERON:0009718
name: neurohypophyseal duct
-def: "Embryonic duct that is the rudiment of cerebral ganglion and and neural gland of adult in the ascidians." [http://dx.doi.org/10.1002/jez.b.21013]
+def: "Embryonic duct that is the rudiment of cerebral ganglion and and neural gland of adult in the ascidians." [https://doi.org/10.1002/jez.b.21013]
comment: Homology: candidate homolog for both neural crest and for the combined olfactory and adenohypophyseal placodes (Burighel et al., 2003; Manni et al., 2004a). Development: During formation of the adult ascidian, the ectodermal neurohypophyseal duct fuses with an evagination of the pharynx to form the neural gland rudiment
is_a: UBERON:0000058 ! duct
@@ -129043,7 +129042,7 @@
[Term]
id: UBERON:0009773
name: renal tubule
-def: "A renal tubule is a tube that filters, re-absorbs and secretes substances to rid an organism of waste and to play a role in fluid homeostasis." [GO:0061333, GOC:dph, GOC:mtg_kidney_jan10, http://dx.doi.org/10.1371/journal.pone.0099864]
+def: "A renal tubule is a tube that filters, re-absorbs and secretes substances to rid an organism of waste and to play a role in fluid homeostasis." [GO:0061333, GOC:dph, GOC:mtg_kidney_jan10, https://doi.org/10.1371/journal.pone.0099864]
subset: grouping_class
subset: pheno_slim
synonym: "renal tubule (generic)" EXACT [https://orcid.org/0000-0002-6601-2165]
@@ -131628,6 +131627,7 @@
name: neuroendocrine gland
def: "any of the organized aggregations of cells that function as secretory or excretory organs and that release hormones in response to neural stimuli" [ISBN:0-683-40008-8, MP:0000631]
subset: pheno_slim
+synonym: "neuroendocrine system gland" EXACT []
xref: MA:0000720
is_a: UBERON:0002368 ! endocrine gland
intersection_of: UBERON:0002368 ! endocrine gland
@@ -133349,13 +133349,13 @@
[Term]
id: UBERON:0010302
name: amnioserosa
-def: "A single extraembryonic epithelium, which closes the germband dorsally." [http://dx.doi.org/10.1073/pnas.0709145105]
+def: "A single extraembryonic epithelium, which closes the germband dorsally." [https://doi.org/10.1073/pnas.0709145105]
subset: efo_slim
synonym: "amnion-serosa" RELATED [BTO:0004800]
xref: BTO:0004800
xref: EFO:0000250
xref: FBbt:00000095
-is_a: UBERON:0010303 {source="http://dx.doi.org/10.1073/pnas.0709145105"} ! extraembryonic epithelium
+is_a: UBERON:0010303 {source="https://doi.org/10.1073/pnas.0709145105"} ! extraembryonic epithelium
[Term]
id: UBERON:0010303
@@ -133800,7 +133800,7 @@
xref: EMAPA:17351
is_a: UBERON:0005866 ! pre-cartilage condensation
is_a: UBERON:0010258 ! mesenchyme from rhombencephalic neural crest
-relationship: develops_from UBERON:0010254 {source="EHDAA2", source="http://dx.doi.org/10.1111/j.1469-7580.2005.00441.x"} ! 2nd arch mesenchyme from neural crest
+relationship: develops_from UBERON:0010254 {source="EHDAA2", source="https://doi.org/10.1111/j.1469-7580.2005.00441.x"} ! 2nd arch mesenchyme from neural crest
[Term]
id: UBERON:0010355
@@ -134929,7 +134929,7 @@
subset: pheno_slim
synonym: "guard hair" EXACT [MA:0001896]
synonym: "guardhair" EXACT []
-synonym: "monotrich hair" EXACT [http://dx.doi.org/10.1016/j.cub.2008.12.005]
+synonym: "monotrich hair" EXACT [https://doi.org/10.1016/j.cub.2008.12.005]
xref: EMAPA:36528
xref: Guard:hair
xref: MA:0001896
@@ -135049,7 +135049,7 @@
[Term]
id: UBERON:0010524
name: fibularis tertius
-def: "A muscle located in the lower limb that arises from the lower third of the anterior surface of the fibula; from the lower part of the interosseous membrane; and from an intermuscular septum between it and the peroneus brevis and inserted into the dorsal surface of the base of the metatarsal bone of the 5th digit. It is innervated by the deep fibular nerve. Its action is that of weak dorsiflexion of the ankle joint and to evert the foot at the ankle joint." [http://dx.doi.org/10.3389/fevo.2018.00053, http://en.wikipedia.org/wiki/Peroneus_tertius_muscle]
+def: "A muscle located in the lower limb that arises from the lower third of the anterior surface of the fibula; from the lower part of the interosseous membrane; and from an intermuscular septum between it and the peroneus brevis and inserted into the dorsal surface of the base of the metatarsal bone of the 5th digit. It is innervated by the deep fibular nerve. Its action is that of weak dorsiflexion of the ankle joint and to evert the foot at the ankle joint." [http://en.wikipedia.org/wiki/Peroneus_tertius_muscle, https://doi.org/10.3389/fevo.2018.00053]
subset: pheno_slim
synonym: "fibularis tertius" RELATED [http://en.wikipedia.org/wiki/Peroneus_tertius]
synonym: "fibularis tertius muscle" RELATED [http://en.wikipedia.org/wiki/Peroneus_tertius]
@@ -137509,7 +137509,7 @@
[Term]
id: UBERON:0010933
name: orbicularis oris muscle
-def: "The orbicularis oris is a superficial facial muscle with fibers that encircle the opening of the oral cavity that attaches to the maxilla, mandible, skin and modiolus, and that participates in oral/pharyngeal behaviors, and is innervated by the facial nerve (CN VII)." [FEED:rd, http://dx.doi.org/10.1002/ar.21355, http://dx.doi.org/10.1111/j.1469-7580.2009.01111.x, http://www.feedexp.org/wiki/Mammalian_Muscle_Ontology_Workshop, MFMO:0000058]
+def: "The orbicularis oris is a superficial facial muscle with fibers that encircle the opening of the oral cavity that attaches to the maxilla, mandible, skin and modiolus, and that participates in oral/pharyngeal behaviors, and is innervated by the facial nerve (CN VII)." [FEED:rd, http://www.feedexp.org/wiki/Mammalian_Muscle_Ontology_Workshop, https://doi.org/10.1002/ar.21355, https://doi.org/10.1111/j.1469-7580.2009.01111.x, MFMO:0000058]
synonym: "incisivii labii inferioris" RELATED [http://en.wikipedia.org/wiki/Orbicularis_oris_muscle]
synonym: "incisivii labii superioris" RELATED [http://en.wikipedia.org/wiki/Orbicularis_oris_muscle]
synonym: "musculus orbicularis oris" RELATED LATIN [http://en.wikipedia.org/wiki/Orbicularis_oris_muscle]
@@ -138876,6 +138876,7 @@
xref: FMA:45658
xref: galen:UpperUrinaryTract
xref: http://www.snomedbrowser.com/Codes/Details/181413006
+xref: NCIT:C61107
is_a: UBERON:0000477 ! anatomical cluster
relationship: part_of UBERON:0001008 {source="FMA"} ! renal system
@@ -138976,15 +138977,15 @@
[Term]
id: UBERON:0011151
name: jaw depressor muscle
-def: "A muscle whose action is to depress the lower jaw." [http://dx.doi.org/10.1006/bijl.2000.0436, https://github.com/obophenotype/uberon/issues/232]
-synonym: "branchiomandibularis" NARROW SENSU [http://dx.doi.org/10.1006/bijl.2000.0436]
-synonym: "coracomandibularis" NARROW SENSU [http://dx.doi.org/10.1006/bijl.2000.0436]
-synonym: "depressor gnathalis" NARROW SENSU [http://dx.doi.org/10.1006/bijl.2000.0436]
-synonym: "geniohyoideus" NARROW SENSU [http://dx.doi.org/10.1006/bijl.2000.0436, TAO:0000612]
-synonym: "geniohyoideus muscle" NARROW SENSU [http://dx.doi.org/10.1006/bijl.2000.0436]
-synonym: "geniothoracis" NARROW SENSU [http://dx.doi.org/10.1006/bijl.2000.0436]
+def: "A muscle whose action is to depress the lower jaw." [https://doi.org/10.1006/bijl.2000.0436, https://github.com/obophenotype/uberon/issues/232]
+synonym: "branchiomandibularis" NARROW SENSU [https://doi.org/10.1006/bijl.2000.0436]
+synonym: "coracomandibularis" NARROW SENSU [https://doi.org/10.1006/bijl.2000.0436]
+synonym: "depressor gnathalis" NARROW SENSU [https://doi.org/10.1006/bijl.2000.0436]
+synonym: "geniohyoideus" NARROW SENSU [https://doi.org/10.1006/bijl.2000.0436, TAO:0000612...
[truncated message content] |
|
From: <cmu...@us...> - 2018-10-14 21:01:42
|
Revision: 5415
http://sourceforge.net/p/obo/svn/5415
Author: cmungall
Date: 2018-10-14 21:01:36 +0000 (Sun, 14 Oct 2018)
Log Message:
-----------
new-release
Added Paths:
-----------
uberon/releases/2018-10-14/
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <cmu...@us...> - 2018-10-14 20:53:07
|
Revision: 5414
http://sourceforge.net/p/obo/svn/5414
Author: cmungall
Date: 2018-10-14 20:51:56 +0000 (Sun, 14 Oct 2018)
Log Message:
-----------
new
Modified Paths:
--------------
uberon/trunk/basic.obo
uberon/trunk/basic.owl
uberon/trunk/bridge/uberon-bridge-to-aao.obo
uberon/trunk/bridge/uberon-bridge-to-aao.owl
uberon/trunk/bridge/uberon-bridge-to-aeo.obo
uberon/trunk/bridge/uberon-bridge-to-aeo.owl
uberon/trunk/bridge/uberon-bridge-to-bila.obo
uberon/trunk/bridge/uberon-bridge-to-bila.owl
uberon/trunk/bridge/uberon-bridge-to-caro.obo
uberon/trunk/bridge/uberon-bridge-to-caro.owl
uberon/trunk/bridge/uberon-bridge-to-dhba.obo
uberon/trunk/bridge/uberon-bridge-to-dhba.owl
uberon/trunk/bridge/uberon-bridge-to-dmba.obo
uberon/trunk/bridge/uberon-bridge-to-dmba.owl
uberon/trunk/bridge/uberon-bridge-to-efo.obo
uberon/trunk/bridge/uberon-bridge-to-efo.owl
uberon/trunk/bridge/uberon-bridge-to-ehdaa.obo
uberon/trunk/bridge/uberon-bridge-to-ehdaa.owl
uberon/trunk/bridge/uberon-bridge-to-ehdaa2.obo
uberon/trunk/bridge/uberon-bridge-to-ehdaa2.owl
uberon/trunk/bridge/uberon-bridge-to-emapa.obo
uberon/trunk/bridge/uberon-bridge-to-emapa.owl
uberon/trunk/bridge/uberon-bridge-to-fbbt.obo
uberon/trunk/bridge/uberon-bridge-to-fbbt.owl
uberon/trunk/bridge/uberon-bridge-to-fbdv.obo
uberon/trunk/bridge/uberon-bridge-to-fbdv.owl
uberon/trunk/bridge/uberon-bridge-to-fma.obo
uberon/trunk/bridge/uberon-bridge-to-fma.owl
uberon/trunk/bridge/uberon-bridge-to-go.obo
uberon/trunk/bridge/uberon-bridge-to-go.owl
uberon/trunk/bridge/uberon-bridge-to-hao.obo
uberon/trunk/bridge/uberon-bridge-to-hao.owl
uberon/trunk/bridge/uberon-bridge-to-hba.obo
uberon/trunk/bridge/uberon-bridge-to-hba.owl
uberon/trunk/bridge/uberon-bridge-to-ma.obo
uberon/trunk/bridge/uberon-bridge-to-ma.owl
uberon/trunk/bridge/uberon-bridge-to-mba.obo
uberon/trunk/bridge/uberon-bridge-to-mba.owl
uberon/trunk/bridge/uberon-bridge-to-mfo.obo
uberon/trunk/bridge/uberon-bridge-to-mfo.owl
uberon/trunk/bridge/uberon-bridge-to-og.obo
uberon/trunk/bridge/uberon-bridge-to-og.owl
uberon/trunk/bridge/uberon-bridge-to-pba.obo
uberon/trunk/bridge/uberon-bridge-to-pba.owl
uberon/trunk/bridge/uberon-bridge-to-sctid.obo
uberon/trunk/bridge/uberon-bridge-to-sctid.owl
uberon/trunk/bridge/uberon-bridge-to-spd.obo
uberon/trunk/bridge/uberon-bridge-to-spd.owl
uberon/trunk/bridge/uberon-bridge-to-tads.obo
uberon/trunk/bridge/uberon-bridge-to-tads.owl
uberon/trunk/bridge/uberon-bridge-to-tao.obo
uberon/trunk/bridge/uberon-bridge-to-tao.owl
uberon/trunk/bridge/uberon-bridge-to-tgma.obo
uberon/trunk/bridge/uberon-bridge-to-tgma.owl
uberon/trunk/bridge/uberon-bridge-to-vsao.obo
uberon/trunk/bridge/uberon-bridge-to-vsao.owl
uberon/trunk/bridge/uberon-bridge-to-wbbt.obo
uberon/trunk/bridge/uberon-bridge-to-wbbt.owl
uberon/trunk/bridge/uberon-bridge-to-wbls.obo
uberon/trunk/bridge/uberon-bridge-to-wbls.owl
uberon/trunk/bridge/uberon-bridge-to-xao.obo
uberon/trunk/bridge/uberon-bridge-to-xao.owl
uberon/trunk/bridge/uberon-bridge-to-zfa.obo
uberon/trunk/bridge/uberon-bridge-to-zfa.owl
uberon/trunk/bridge/uberon-bridge-to-zfs.obo
uberon/trunk/bridge/uberon-bridge-to-zfs.owl
uberon/trunk/chebi_import.owl
uberon/trunk/cl_import.owl
uberon/trunk/composite-metazoan-basic.obo
uberon/trunk/composite-metazoan.obo
uberon/trunk/composite-metazoan.owl
uberon/trunk/composite-vertebrate.obo
uberon/trunk/composite-vertebrate.owl
uberon/trunk/core.obo
uberon/trunk/core.owl
uberon/trunk/diffs/uberon-diff.md
uberon/trunk/ext.obo
uberon/trunk/ext.owl
uberon/trunk/go_import.owl
uberon/trunk/merged.obo
uberon/trunk/merged.owl
uberon/trunk/ncbitaxon_import.owl
uberon/trunk/pato_import.owl
uberon/trunk/pr_import.owl
uberon/trunk/reports/stages-human-report.tsv
uberon/trunk/reports/stages-metazoan-report.tsv
uberon/trunk/reports/stages-mouse-report.tsv
uberon/trunk/reports/stages-xenopus-report.tsv
uberon/trunk/subsets/amniote-basic.obo
uberon/trunk/subsets/amniote-basic.owl
uberon/trunk/subsets/cumbo.obo
uberon/trunk/subsets/digestive-minimal.obo
uberon/trunk/subsets/efo-slim.obo
uberon/trunk/subsets/efo-slim.owl
uberon/trunk/subsets/euarchontoglires-basic.obo
uberon/trunk/subsets/euarchontoglires-basic.owl
uberon/trunk/subsets/life-stages-composite.obo
uberon/trunk/subsets/life-stages-core.obo
uberon/trunk/subsets/life-stages-core.owl
uberon/trunk/subsets/mouse-view.owl
uberon/trunk/subsets/nervous-minimal.obo
uberon/trunk/subsets/reproductive-minimal.obo
uberon/trunk/subsets/sensory-minimal.obo
uberon/trunk/subsets/uberon-with-isa-for-FMA-MA-ZFA.obo
uberon/trunk/uberon-base.owl
uberon/trunk/uberon.obo
uberon/trunk/uberon.owl
Modified: uberon/trunk/basic.obo
===================================================================
--- uberon/trunk/basic.obo 2018-09-10 23:09:31 UTC (rev 5413)
+++ uberon/trunk/basic.obo 2018-10-14 20:51:56 UTC (rev 5414)
@@ -1,6 +1,6 @@
format-version: 1.2
-data-version: uberon/releases/2018-09-10/basic.owl
-date: 10:09:2018 12:40
+data-version: uberon/releases/2018-10-14/basic.owl
+date: 14:10:2018 12:18
saved-by: cjm
subsetdef: cumbo "CUMBO"
subsetdef: cyclostome_subset "cyclostome structures"
@@ -2405,7 +2405,6 @@
xref: EFO:0001322
xref: EHDAA:27
xref: FBdv:00005288
-xref: HsapDv:0000001
xref: http://en.wikipedia.org/wiki/Zygote
xref: NCIT:C12601
xref: PdumDv:0000100
@@ -92337,6 +92336,7 @@
synonym: "mucosa of organ of upper lip" EXACT [OBOL:automatic]
synonym: "mucous membrane of upper lip" EXACT [OBOL:automatic]
synonym: "organ mucosa of upper lip" EXACT [OBOL:automatic]
+synonym: "upper labial mucosa" EXACT [UBERON:cjm]
synonym: "upper lip mucosa" EXACT [OBOL:automatic]
synonym: "upper lip mucosa of organ" EXACT [OBOL:automatic]
synonym: "upper lip mucous membrane" EXACT [OBOL:automatic]
@@ -92346,9 +92346,8 @@
xref: http://www.snomedbrowser.com/Codes/Details/362088009
xref: NCIT:C12224
xref: UMLS:C0226933 {source="ncithesaurus:Mucosa_of_the_Upper_Lip"}
-is_a: UBERON:0003729 ! mouth mucosa
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
-is_a: UBERON:0013754 ! integumentary system layer
+is_a: UBERON:0036294 ! mucosa of lip
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0001834 ! upper lip
relationship: part_of UBERON:0001834 ! upper lip
@@ -92357,6 +92356,7 @@
id: UBERON:0005032
name: mucosa of lower lip
def: "A mucosa that is part of a lower lip [Automatically generated definition]." [OBOL:automatic]
+synonym: "lower labial mucosa" EXACT [UBERON:cjm]
synonym: "lower lip mucosa" EXACT [OBOL:automatic]
synonym: "lower lip mucosa of organ" EXACT [OBOL:automatic]
synonym: "lower lip mucous membrane" EXACT [OBOL:automatic]
@@ -92369,9 +92369,8 @@
xref: http://www.snomedbrowser.com/Codes/Details/362089001
xref: NCIT:C12225
xref: UMLS:C0226939 {source="ncithesaurus:Mucosa_of_the_Lower_Lip"}
-is_a: UBERON:0003729 ! mouth mucosa
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
-is_a: UBERON:0013754 ! integumentary system layer
+is_a: UBERON:0036294 ! mucosa of lip
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0001835 ! lower lip
relationship: part_of UBERON:0001835 ! lower lip
@@ -111368,14 +111367,12 @@
def: "A small fold of mucous membrane extending from the floor of the mouth to the midline of the underside of the tongue." [MGI:anna]
subset: pheno_slim
synonym: "frenulum" BROAD []
+synonym: "frenulum linguae" EXACT [http://en.wikipedia.org/wiki/Frenulum_of_tongue]
synonym: "frenulum linguae" EXACT LATIN [http://en.wikipedia.org/wiki/Frenulum_of_tongue]
-synonym: "frenulum linguae" RELATED [http://en.wikipedia.org/wiki/Frenulum_of_tongue]
-synonym: "frenulum linguæ" RELATED [http://en.wikipedia.org/wiki/Frenulum_of_tongue]
-synonym: "frenulum of the tongue" RELATED [http://en.wikipedia.org/wiki/Frenulum_of_tongue]
-synonym: "lingual frenulum" RELATED [http://en.wikipedia.org/wiki/Frenulum_of_tongue]
+synonym: "frenulum linguæ" EXACT [http://en.wikipedia.org/wiki/Frenulum_of_tongue]
+synonym: "frenulum of the tongue" EXACT [http://en.wikipedia.org/wiki/Frenulum_of_tongue]
+synonym: "lingual frenulum" EXACT [http://en.wikipedia.org/wiki/Frenulum_of_tongue]
synonym: "lingual frenum" RELATED [http://en.wikipedia.org/wiki/Frenulum_of_tongue]
-synonym: "oral frenula" EXACT PLURAL [HP:0000190]
-synonym: "oral frenulum" EXACT [HP:0000190]
synonym: "tongue frenulum" EXACT [FMA:54659]
xref: EMAPA:18656
xref: FMA:54659
@@ -111385,6 +111382,9 @@
xref: NCIT:C87076
xref: UMLS:C2339893 {source="ncithesaurus:Frenulum"}
is_a: UBERON:0005020 ! mucosa of tongue
+is_a: UBERON:0036293 ! oral frenulum
+intersection_of: UBERON:0036293 ! oral frenulum
+intersection_of: part_of UBERON:0001723 ! tongue
disjoint_from: UBERON:0011268 ! sublingua
[Term]
@@ -120445,7 +120445,7 @@
xref: http://www.snomedbrowser.com/Codes/Details/362666008
xref: MA:0000028
is_a: UBERON:0000475 ! organism subdivision
-relationship: part_of UBERON:0000915 {source="FMA"} ! thoracic segment of trunk
+relationship: part_of UBERON:0000915 {source="MA"} ! thoracic segment of trunk
relationship: part_of UBERON:0011270 {source="FMA"} ! dorsal trunk
[Term]
@@ -147980,7 +147980,7 @@
[Term]
id: UBERON:0012451
name: sensory receptor
-def: "A sensory nerve ending that responds to a stimulus in the internal or external environment of an organism. In response to stimuli the sensory receptor initiates sensory transduction by creating graded potentials or action potentials in the same cell or in an adjacent one.." [http://en.wikipedia.org/wiki/Sensory_receptor]
+def: "A sensory nerve ending that responds to a stimulus in the internal or external environment of an organism. In response to stimuli the sensory receptor initiates sensory transduction by creating graded potentials or action potentials in the same cell or in an adjacent one." [http://en.wikipedia.org/wiki/Sensory_receptor]
synonym: "peripheral ending of sensory neuron" EXACT [FMA:84650]
synonym: "sensory nerve ending" RELATED [MESH:A08.800.550.700]
xref: FMA:84650
@@ -164698,13 +164698,15 @@
id: UBERON:0016910
name: frenulum of lip
synonym: "frenulum labii" EXACT []
+synonym: "labial frenulum" EXACT []
synonym: "lip frenulum" EXACT [FMA:59820]
synonym: "medial labial frenulum" RELATED [FMA:59820]
xref: FMA:59820
xref: http://www.snomedbrowser.com/Codes/Details/264053009
-is_a: UBERON:0003729 ! mouth mucosa
-is_a: UBERON:0013754 ! integumentary system layer
-relationship: part_of UBERON:0001833 ! lip
+is_a: UBERON:0036293 ! oral frenulum
+is_a: UBERON:0036294 ! mucosa of lip
+intersection_of: UBERON:0036293 ! oral frenulum
+intersection_of: part_of UBERON:0001833 ! lip
[Term]
id: UBERON:0016912
@@ -179867,7 +179869,7 @@
xref: http://linkedlifedata.com/resource/umls/id/C0226661
xref: http://www.snomedbrowser.com/Codes/Details/277730007
xref: NCIT:C12881
-is_a: UBERON:0004148 {source="ncithesaurus"} ! cardiac vein
+is_a: UBERON:0004148 {source="FMA"} ! cardiac vein
[Term]
id: UBERON:0035377
@@ -184010,6 +184012,44 @@
relationship: part_of UBERON:0036289 ! anterior wall of right ventricle
[Term]
+id: UBERON:0036292
+name: adnexa of uterus
+def: "The fallopian tubes and ovaries." [http://en.wikipedia.org/wiki/Adnexa_of_uterus]
+synonym: "adnexa uteri" RELATED [http://en.wikipedia.org/wiki/Adnexa_of_uterus]
+synonym: "uterine adnexa" EXACT [FMA:265256]
+xref: FMA:265256
+xref: http://en.wikipedia.org/wiki/Adnexa_of_uterus
+xref: http://www.snomedbrowser.com/Codes/Details/361373008
+is_a: UBERON:0000064 ! organ part
+is_a: UBERON:0005156 ! reproductive structure
+relationship: part_of UBERON:0000995 ! uterus
+
+[Term]
+id: UBERON:0036293
+name: oral frenulum
+def: "A small fold of mucous membrane in the mouth, connecting either the tongue or the lip to the mouth mucosa." [https://github.com/obophenotype/human-phenotype-ontology/issues/3336, UBERON:cjm]
+synonym: "frenulum" BROAD []
+synonym: "oral frenula" EXACT PLURAL [HP:0000190]
+synonym: "oral frenulum" EXACT [HP:0000190]
+synonym: "oral frenum" RELATED []
+xref: http://www.snomedbrowser.com/Codes/Details/303771008
+is_a: UBERON:0003729 ! mouth mucosa
+union_of: UBERON:0006689 ! frenulum of tongue
+union_of: UBERON:0016910 ! frenulum of lip
+
+[Term]
+id: UBERON:0036294
+name: mucosa of lip
+def: "A mucosa that is part of a lip region [Automatically generated definition]." [OBOL:automatic]
+synonym: "labial mucosa" EXACT [UBERON:cjm]
+xref: NCIT:C12226
+is_a: UBERON:0003729 ! mouth mucosa
+is_a: UBERON:0013754 ! integumentary system layer
+intersection_of: UBERON:0000344 ! mucosa
+intersection_of: part_of UBERON:0001833 ! lip
+relationship: part_of UBERON:0001833 ! lip
+
+[Term]
id: UBERON:1000000
name: chin ventral margin
def: "Subdivision of the head consisting of the area along the lower edge of the chin." [https://github.com/obophenotype/uberon/issues/34, UBERON:EJS]
Modified: uberon/trunk/basic.owl
===================================================================
--- uberon/trunk/basic.owl 2018-09-10 23:09:31 UTC (rev 5413)
+++ uberon/trunk/basic.owl 2018-10-14 20:51:56 UTC (rev 5414)
@@ -17,7 +17,7 @@
xmlns:dc="http://purl.org/dc/elements/1.1/"
xmlns:insect-anatomy="http://purl.obolibrary.org/obo/uberon/insect-anatomy#">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/basic.owl">
- <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/releases/2018-09-10/basic.owl"/>
+ <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/releases/2018-10-14/basic.owl"/>
<dc:contributor rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Lydie Lane</dc:contributor>
<dc:contributor rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Paula Mabee</dc:contributor>
<doap:bug-database rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">https://github.com/obophenotype/uberon/issues/</doap:bug-database>
@@ -10371,7 +10371,6 @@
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">EFO:0001322</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">EHDAA:27</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">FBdv:00005288</oboInOwl:hasDbXref>
- <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">HsapDv:0000001</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">NCIT:C12601</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PdumDv:0000100</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">VHOG:0000745</oboInOwl:hasDbXref>
@@ -346413,9 +346412,8 @@
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
- <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0003729"/>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0010314"/>
- <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0013754"/>
+ <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0036294"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
@@ -346431,6 +346429,7 @@
<oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">mucosa of organ of upper lip</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">mucous membrane of upper lip</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">organ mucosa of upper lip</oboInOwl:hasExactSynonym>
+ <oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">upper labial mucosa</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">upper lip mucosa</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">upper lip mucosa of organ</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">upper lip mucous membrane</oboInOwl:hasExactSynonym>
@@ -346472,6 +346471,12 @@
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/UBERON_0005031"/>
<owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"/>
+ <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">upper labial mucosa</owl:annotatedTarget>
+ <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">UBERON:cjm</oboInOwl:hasDbXref>
+ </owl:Axiom>
+ <owl:Axiom>
+ <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/UBERON_0005031"/>
+ <owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"/>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">upper lip mucosa</owl:annotatedTarget>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">OBOL:automatic</oboInOwl:hasDbXref>
</owl:Axiom>
@@ -346510,9 +346515,8 @@
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
- <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0003729"/>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0010314"/>
- <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0013754"/>
+ <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0036294"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
@@ -346525,6 +346529,7 @@
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">FMA:59833</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">NCIT:C12225</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">UMLS:C0226939</oboInOwl:hasDbXref>
+ <oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">lower labial mucosa</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">lower lip mucosa</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">lower lip mucosa of organ</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">lower lip mucous membrane</oboInOwl:hasExactSynonym>
@@ -346551,6 +346556,12 @@
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/UBERON_0005032"/>
<owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"/>
+ <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">lower labial mucosa</owl:annotatedTarget>
+ <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">UBERON:cjm</oboInOwl:hasDbXref>
+ </owl:Axiom>
+ <owl:Axiom>
+ <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/UBERON_0005032"/>
+ <owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"/>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">lower lip mucosa</owl:annotatedTarget>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">OBOL:automatic</oboInOwl:hasDbXref>
</owl:Axiom>
@@ -419423,7 +419434,19 @@
<!-- http://purl.obolibrary.org/obo/UBERON_0006689 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0006689">
+ <owl:equivalentClass>
+ <owl:Class>
+ <owl:intersectionOf rdf:parseType="Collection">
+ <rdf:Description rdf:about="http://purl.obolibrary.org/obo/UBERON_0036293"/>
+ <owl:Restriction>
+ <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
+ <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_0001723"/>
+ </owl:Restriction>
+ </owl:intersectionOf>
+ </owl:Class>
+ </owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0005020"/>
+ <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0036293"/>
<owl:disjointWith rdf:resource="http://purl.obolibrary.org/obo/UBERON_0011268"/>
<obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A small fold of mucous membrane extending from the floor of the mouth to the midline of the underside of the tongue.</obo:IAO_0000115>
<oboInOwl:hasBroadSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">frenulum</oboInOwl:hasBroadSynonym>
@@ -419435,14 +419458,11 @@
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">NCIT:C87076</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">UMLS:C2339893</oboInOwl:hasDbXref>
<oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">frenulum linguae</oboInOwl:hasExactSynonym>
- <oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">oral frenula</oboInOwl:hasExactSynonym>
- <oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">oral frenulum</oboInOwl:hasExactSynonym>
+ <oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">frenulum linguæ</oboInOwl:hasExactSynonym>
+ <oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">frenulum of the tongue</oboInOwl:hasExactSynonym>
+ <oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">lingual frenulum</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">tongue frenulum</oboInOwl:hasExactSynonym>
<oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">uberon</oboInOwl:hasOBONamespace>
- <oboInOwl:hasRelatedSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">frenulum linguae</oboInOwl:hasRelatedSynonym>
- <oboInOwl:hasRelatedSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">frenulum linguæ</oboInOwl:hasRelatedSynonym>
- <oboInOwl:hasRelatedSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">frenulum of the tongue</oboInOwl:hasRelatedSynonym>
- <oboInOwl:hasRelatedSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">lingual frenulum</oboInOwl:hasRelatedSynonym>
<oboInOwl:hasRelatedSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">lingual frenum</oboInOwl:hasRelatedSynonym>
<oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">UBERON:0006689</oboInOwl:id>
<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/uberon/core#pheno_slim"/>
@@ -419466,53 +419486,40 @@
<owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"/>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">frenulum linguae</owl:annotatedTarget>
<oboInOwl:hasDbXref rdf:resource="http://en.wikipedia.org/wiki/Frenulum_of_tongue"/>
- <oboInOwl:hasSynonymType rdf:resource="http://purl.obolibrary.org/obo/uberon/core#LATIN"/>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/UBERON_0006689"/>
<owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"/>
- <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">oral frenula</owl:annotatedTarget>
- <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">HP:0000190</oboInOwl:hasDbXref>
- <oboInOwl:hasSynonymType rdf:resource="http://purl.obolibrary.org/obo/uberon/core#PLURAL"/>
- </owl:Axiom>
- <owl:Axiom>
- <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/UBERON_0006689"/>
- <owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"/>
- <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">oral frenulum</owl:annotatedTarget>
- <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">HP:0000190</oboInOwl:hasDbXref>
- </owl:Axiom>
- <owl:Axiom>
- <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/UBERON_0006689"/>
- <owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"/>
- <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">tongue frenulum</owl:annotatedTarget>
- <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">FMA:54659</oboInOwl:hasDbXref>
- </owl:Axiom>
- <owl:Axiom>
- <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/UBERON_0006689"/>
- <owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym"/>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">frenulum linguae</owl:annotatedTarget>
<oboInOwl:hasDbXref rdf:resource="http://en.wikipedia.org/wiki/Frenulum_of_tongue"/>
+ <oboInOwl:hasSynonymType rdf:resource="http://purl.obolibrary.org/obo/uberon/core#LATIN"/>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/UBERON_0006689"/>
- <owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym"/>
+ <owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"/>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">frenulum linguæ</owl:annotatedTarget>
<oboInOwl:hasDbXref rdf:resource="http://en.wikipedia.org/wiki/Frenulum_of_tongue"/>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/UBERON_0006689"/>
- <owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym"/>
+ <owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"/>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">frenulum of the tongue</owl:annotatedTarget>
<oboInOwl:hasDbXref rdf:resource="http://en.wikipedia.org/wiki/Frenulum_of_tongue"/>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/UBERON_0006689"/>
- <owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym"/>
+ <owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"/>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">lingual frenulum</owl:annotatedTarget>
<oboInOwl:hasDbXref rdf:resource="http://en.wikipedia.org/wiki/Frenulum_of_tongue"/>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/UBERON_0006689"/>
+ <owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"/>
+ <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">tongue frenulum</owl:annotatedTarget>
+ <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">FMA:54659</oboInOwl:hasDbXref>
+ </owl:Axiom>
+ <owl:Axiom>
+ <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/UBERON_0006689"/>
<owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym"/>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">lingual frenum</owl:annotatedTarget>
<oboInOwl:hasDbXref rdf:resource="http://en.wikipedia.org/wiki/Frenulum_of_tongue"/>
@@ -559846,7 +559853,7 @@
<owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0012451">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0012453"/>
- <obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A sensory nerve ending that responds to a stimulus in the internal or external environment of an organism. In response to stimuli the sensory receptor initiates sensory transduction by creating graded potentials or action potentials in the same cell or in an adjacent one..</obo:IAO_0000115>
+ <obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A sensory nerve ending that responds to a stimulus in the internal or external environment of an organism. In response to stimuli the sensory receptor initiates sensory transduction by creating graded potentials or action potentials in the same cell or in an adjacent one.</obo:IAO_0000115>
<oboInOwl:hasDbXref rdf:resource="http://en.wikipedia.org/wiki/Sensory_receptor"/>
<oboInOwl:hasDbXref rdf:resource="http://linkedlifedata.com/resource/umls/id/C0682664"/>
<oboInOwl:hasDbXref rdf:resource="http://www.snomedbrowser.com/Codes/Details/70402007"/>
@@ -559863,7 +559870,7 @@
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/UBERON_0012451"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
- <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A sensory nerve ending that responds to a stimulus in the internal or external environment of an organism. In response to stimuli the sensory receptor initiates sensory transduction by creating graded potentials or action potentials in the same cell or in an adjacent one..</owl:annotatedTarget>
+ <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A sensory nerve ending that responds to a stimulus in the internal or external environment of an organism. In response to stimuli the sensory receptor initiates sensory transduction by creating graded potentials or action potentials in the same cell or in an adjacent one.</owl:annotatedTarget>
<oboInOwl:hasDbXref rdf:resource="http://en.wikipedia.org/wiki/Sensory_receptor"/>
</owl:Axiom>
<owl:Axiom>
@@ -622527,17 +622534,23 @@
<!-- http://purl.obolibrary.org/obo/UBERON_0016910 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0016910">
- <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0003729"/>
- <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0013754"/>
- <rdfs:subClassOf>
- <owl:Restriction>
- <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
- <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_0001833"/>
- </owl:Restriction>
- </rdfs:subClassOf>
+ <owl:equivalentClass>
+ <owl:Class>
+ <owl:intersectionOf rdf:parseType="Collection">
+ <rdf:Description rdf:about="http://purl.obolibrary.org/obo/UBERON_0036293"/>
+ <owl:Restriction>
+ <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
+ <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_0001833"/>
+ </owl:Restriction>
+ </owl:intersectionOf>
+ </owl:Class>
+ </owl:equivalentClass>
+ <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0036293"/>
+ <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0036294"/>
<oboInOwl:hasDbXref rdf:resource="http://www.snomedbrowser.com/Codes/Details/264053009"/>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">FMA:59820</oboInOwl:hasDbXref>
<oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">frenulum labii</oboInOwl:hasExactSynonym>
+ <oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">labial frenulum</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">lip frenulum</oboInOwl:hasExactSynonym>
<oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">uberon</oboInOwl:hasOBONamespace>
<oboInOwl:hasRelatedSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">medial labial frenulum</oboInOwl:hasRelatedSynonym>
@@ -692107,6 +692120,137 @@
+ <!-- http://purl.obolibrary.org/obo/UBERON_0036292 -->
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0036292">
+ <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000064"/>
+ <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0005156"/>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
+ <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000995"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">The fallopian tubes and ovaries.</obo:IAO_0000115>
+ <oboInOwl:hasDbXref rdf:resource="http://en.wikipedia.org/wiki/Adnexa_of_uterus"/>
+ <oboInOwl:hasDbXref rdf:resource="http://www.snomedbrowser.com/Codes/Details/361373008"/>
+ <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">FMA:265256</oboInOwl:hasDbXref>
+ <oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">uterine adnexa</oboInOwl:hasExactSynonym>
+ <oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">uberon</oboInOwl:hasOBONamespace>
+ <oboInOwl:hasRelatedSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">adnexa uteri</oboInOwl:hasRelatedSynonym>
+ <oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">UBERON:0036292</oboInOwl:id>
+ <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">adnexa of uterus</rdfs:label>
+ </owl:Class>
+ <owl:Axiom>
+ <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/UBERON_0036292"/>
+ <owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
+ <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">The fallopian tubes and ovaries.</owl:annotatedTarget>
+ <oboInOwl:hasDbXref rdf:resource="http://en.wikipedia.org/wiki/Adnexa_of_uterus"/>
+ </owl:Axiom>
+ <owl:Axiom>
+ <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/UBERON_0036292"/>
+ <owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"/>
+ <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">uterine adnexa</owl:annotatedTarget>
+ <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">FMA:265256</oboInOwl:hasDbXref>
+ </owl:Axiom>
+ <owl:Axiom>
+ <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/UBERON_0036292"/>
+ <owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym"/>
+ <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">adnexa uteri</owl:annotatedTarget>
+ <oboInOwl:hasDbXref rdf:resource="http://en.wikipedia.org/wiki/Adnexa_of_uterus"/>
+ </owl:Axiom>
+
+
+
+ <!-- http://purl.obolibrary.org/obo/UBERON_0036293 -->
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0036293">
+ <owl:equivalentClass>
+ <owl:Class>
+ <owl:unionOf rdf:parseType="Collection">
+ <rdf:Description rdf:about="http://purl.obolibrary.org/obo/UBERON_0006689"/>
+ <rdf:Description rdf:about="http://purl.obolibrary.org/obo/UBERON_0016910"/>
+ </owl:unionOf>
+ </owl:Class>
+ </owl:equivalentClass>
+ <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0003729"/>
+ <obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A small fold of mucous membrane in the mouth, connecting either the tongue or the lip to the mouth mucosa.</obo:IAO_0000115>
+ <oboInOwl:hasBroadSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">frenulum</oboInOwl:hasBroadSynonym>
+ <oboInOwl:hasDbXref rdf:resource="http://www.snomedbrowser.com/Codes/Details/303771008"/>
+ <oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">oral frenula</oboInOwl:hasExactSynonym>
+ <oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">oral frenulum</oboInOwl:hasExactSynonym>
+ <oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">uberon</oboInOwl:hasOBONamespace>
+ <oboInOwl:hasRelatedSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">oral frenum</oboInOwl:hasRelatedSynonym>
+ <oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">UBERON:0036293</oboInOwl:id>
+ <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">oral frenulum</rdfs:label>
+ </owl:Class>
+ <owl:Axiom>
+ <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/UBERON_0036293"/>
+ <owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
+ <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A small fold of mucous membrane in the mouth, connecting either the tongue or the lip to the mouth mucosa.</owl:annotatedTarget>
+ <oboInOwl:hasDbXref rdf:resource="https://github.com/obophenotype/human-phenotype-ontology/issues/3336"/>
+ <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">UBERON:cjm</oboInOwl:hasDbXref>
+ </owl:Axiom>
+ <owl:Axiom>
+ <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/UBERON_0036293"/>
+ <owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"/>
+ <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">oral frenula</owl:annotatedTarget>
+ <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">HP:0000190</oboInOwl:hasDbXref>
+ <oboInOwl:hasSynonymType rdf:resource="http://purl.obolibrary.org/obo/uberon/core#PLURAL"/>
+ </owl:Axiom>
+ <owl:Axiom>
+ <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/UBERON_0036293"/>
+ <owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"/>
+ <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">oral frenulum</owl:annotatedTarget>
+ <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">HP:0000190</oboInOwl:hasDbXref>
+ </owl:Axiom>
+
+
+
+ <!-- http://purl.obolibrary.org/obo/UBERON_0036294 -->
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0036294">
+ <owl:equivalentClass>
+ <owl:Class>
+ <owl:intersectionOf rdf:parseType="Collection">
+ <rdf:Description rdf:about="http://purl.obolibrary.org/obo/UBERON_0000344"/>
+ <owl:Restriction>
+ <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
+ <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_0001833"/>
+ </owl:Restriction>
+ </owl:intersectionOf>
+ </owl:Class>
+ </owl:equivalentClass>
+ <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0003729"/>
+ <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0013754"/>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
+ <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_0001833"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A mucosa that is part of a lip region [Automatically generated definition].</obo:IAO_0000115>
+ <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">NCIT:C12226</oboInOwl:hasDbXref>
+ <oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">labial mucosa</oboInOwl:hasExactSynonym>
+ <oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">uberon</oboInOwl:hasOBONamespace>
+ <oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">UBERON:0036294</oboInOwl:id>
+ <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">mucosa of lip</rdfs:label>
+ </owl:Class>
+ <owl:Axiom>
+ <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/UBERON_0036294"/>
+ <owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
+ <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A mucosa that is part of a lip region [Automatically generated definition].</owl:annotatedTarget>
+ <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">OBOL:automatic</oboInOwl:hasDbXref>
+ </owl:Axiom>
+ <owl:Axiom>
+ <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/UBERON_0036294"/>
+ <owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"/>
+ <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">labial mucosa</owl:annotatedTarget>
+ <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">UBERON:cjm</oboInOwl:hasDbXref>
+ </owl:Axiom>
+
+
+
<!-- http://purl.obolibrary.org/obo/UBERON_1000000 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_1000000">
Modified: uberon/trunk/bridge/uberon-bridge-to-aao.obo
===================================================================
--- uberon/trunk/bridge/uberon-bridge-to-aao.obo 2018-09-10 23:09:31 UTC (rev 5413)
+++ uberon/trunk/bridge/uberon-bridge-to-aao.obo 2018-10-14 20:51:56 UTC (rev 5414)
@@ -1,5 +1,5 @@
ontology: uberon/bridge/uberon-bridge-to-aao
-data-version: 2018-09-10
+data-version: 2018-10-14
property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI
property_value: dc-title "Uberon bridge to aao" xsd:string
property_value: dc-description "Equivalence axioms between AAO and Uberon. Note that AAO is in the process of being merged into the core Uberon, so this mapping will become deprecated" xsd:string
Modified: uberon/trunk/bridge/uberon-bridge-to-aao.owl
===================================================================
--- uberon/trunk/bridge/uberon-bridge-to-aao.owl 2018-09-10 23:09:31 UTC (rev 5413)
+++ uberon/trunk/bridge/uberon-bridge-to-aao.owl 2018-10-14 20:51:56 UTC (rev 5414)
@@ -13,7 +13,7 @@
xmlns:foaf="http://xmlns.com/foaf/0.1/"
xmlns:dc="http://purl.org/dc/elements/1.1/">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-aao.owl">
- <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-aao/2018-09-10/uberon/bridge/uberon-bridge-to-aao.owl"/>
+ <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-aao/2018-10-14/uberon/bridge/uberon-bridge-to-aao.owl"/>
<terms:references rdf:resource="http://purl.obolibrary.org/obo/aao.owl"/>
<rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://purl.obolibrary.org/obo/uberon/references/reference_0000026</rdfs:seeAlso>
<dc:contributor rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Paula Mabee</dc:contributor>
Modified: uberon/trunk/bridge/uberon-bridge-to-aeo.obo
===================================================================
--- uberon/trunk/bridge/uberon-bridge-to-aeo.obo 2018-09-10 23:09:31 UTC (rev 5413)
+++ uberon/trunk/bridge/uberon-bridge-to-aeo.obo 2018-10-14 20:51:56 UTC (rev 5414)
@@ -1,5 +1,5 @@
ontology: uberon/bridge/uberon-bridge-to-aeo
-data-version: 2018-09-10
+data-version: 2018-10-14
property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI
[Term]
Modified: uberon/trunk/bridge/uberon-bridge-to-aeo.owl
===================================================================
--- uberon/trunk/bridge/uberon-bridge-to-aeo.owl 2018-09-10 23:09:31 UTC (rev 5413)
+++ uberon/trunk/bridge/uberon-bridge-to-aeo.owl 2018-10-14 20:51:56 UTC (rev 5414)
@@ -13,7 +13,7 @@
xmlns:foaf="http://xmlns.com/foaf/0.1/"
xmlns:dc="http://purl.org/dc/elements/1.1/">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-aeo.owl">
- <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-aeo/2018-09-10/uberon/bridge/uberon-bridge-to-aeo.owl"/>
+ <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-aeo/2018-10-14/uberon/bridge/uberon-bridge-to-aeo.owl"/>
<rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://purl.obolibrary.org/obo/uberon/references/reference_0000026</rdfs:seeAlso>
</owl:Ontology>
Modified: uberon/trunk/bridge/uberon-bridge-to-bila.obo
===================================================================
--- uberon/trunk/bridge/uberon-bridge-to-bila.obo 2018-09-10 23:09:31 UTC (rev 5413)
+++ uberon/trunk/bridge/uberon-bridge-to-bila.obo 2018-10-14 20:51:56 UTC (rev 5414)
@@ -1,5 +1,5 @@
ontology: uberon/bridge/uberon-bridge-to-bila
-data-version: 2018-09-10
+data-version: 2018-10-14
property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI
[Term]
Modified: uberon/trunk/bridge/uberon-bridge-to-bila.owl
===================================================================
--- uberon/trunk/bridge/uberon-bridge-to-bila.owl 2018-09-10 23:09:31 UTC (rev 5413)
+++ uberon/trunk/bridge/uberon-bridge-to-bila.owl 2018-10-14 20:51:56 UTC (rev 5414)
@@ -13,7 +13,7 @@
xmlns:foaf="http://xmlns.com/foaf/0.1/"
xmlns:dc="http://purl.org/dc/elements/1.1/">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-bila.owl">
- <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-bila/2018-09-10/uberon/bridge/uberon-bridge-to-bila.owl"/>
+ <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-bila/2018-10-14/uberon/bridge/uberon-bridge-to-bila.owl"/>
<rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://purl.obolibrary.org/obo/uberon/references/reference_0000026</rdfs:seeAlso>
</owl:Ontology>
Modified: uberon/trunk/bridge/uberon-bridge-to-caro.obo
===================================================================
--- uberon/trunk/bridge/uberon-bridge-to-caro.obo 2018-09-10 23:09:31 UTC (rev 5413)
+++ uberon/trunk/bridge/uberon-bridge-to-caro.obo 2018-10-14 20:51:56 UTC (rev 5414)
@@ -1,5 +1,5 @@
ontology: uberon/bridge/uberon-bridge-to-caro
-data-version: 2018-09-10
+data-version: 2018-10-14
property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI
[Term]
Modified: uberon/trunk/bridge/uberon-bridge-to-caro.owl
===================================================================
--- uberon/trunk/bridge/uberon-bridge-to-caro.owl 2018-09-10 23:09:31 UTC (rev 5413)
+++ uberon/trunk/bridge/uberon-bridge-to-caro.owl 2018-10-14 20:51:56 UTC (rev 5414)
@@ -13,7 +13,7 @@
xmlns:foaf="http://xmlns.com/foaf/0.1/"
xmlns:dc="http://purl.org/dc/elements/1.1/">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-caro.owl">
- <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-caro/2018-09-10/uberon/bridge/uberon-bridge-to-caro.owl"/>
+ <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-caro/2018-10-14/uberon/bridge/uberon-bridge-to-caro.owl"/>
<rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://purl.obolibrary.org/obo/uberon/references/reference_0000026</rdfs:seeAlso>
</owl:Ontology>
Modified: uberon/trunk/bridge/uberon-bridge-to-dhba.obo
===================================================================
--- uberon/trunk/bridge/uberon-bridge-to-dhba.obo 2018-09-10 23:09:31 UTC (rev 5413)
+++ uberon/trunk/bridge/uberon-bridge-to-dhba.obo 2018-10-14 20:51:56 UTC (rev 5414)
@@ -1,5 +1,5 @@
ontology: uberon/bridge/uberon-bridge-to-dhba
-data-version: 2018-09-10
+data-version: 2018-10-14
property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI
[Term]
Modified: uberon/trunk/bridge/uberon-bridge-to-dhba.owl
===================================================================
--- uberon/trunk/bridge/uberon-bridge-to-dhba.owl 2018-09-10 23:09:31 UTC (rev 5413)
+++ uberon/trunk/bridge/uberon-bridge-to-dhba.owl 2018-10-14 20:51:56 UTC (rev 5414)
@@ -13,7 +13,7 @@
xmlns:foaf="http://xmlns.com/foaf/0.1/"
xmlns:dc="http://purl.org/dc/elements/1.1/">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-dhba.owl">
- <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-dhba/2018-09-10/uberon/bridge/uberon-bridge-to-dhba.owl"/>
+ <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-dhba/2018-10-14/uberon/bridge/uberon-bridge-to-dhba.owl"/>
<rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://purl.obolibrary.org/obo/uberon/references/reference_0000026</rdfs:seeAlso>
</owl:Ontology>
Modified: uberon/trunk/bridge/uberon-bridge-to-dmba.obo
===================================================================
--- uberon/trunk/bridge/uberon-bridge-to-dmba.obo 2018-09-10 23:09:31 UTC (rev 5413)
+++ uberon/trunk/bridge/uberon-bridge-to-dmba.obo 2018-10-14 20:51:56 UTC (rev 5414)
@@ -1,5 +1,5 @@
ontology: uberon/bridge/uberon-bridge-to-dmba
-data-version: 2018-09-10
+data-version: 2018-10-14
property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI
[Term]
Modified: uberon/trunk/bridge/uberon-bridge-to-dmba.owl
===================================================================
--- uberon/trunk/bridge/uberon-bridge-to-dmba.owl 2018-09-10 23:09:31 UTC (rev 5413)
+++ uberon/trunk/bridge/uberon-bridge-to-dmba.owl 2018-10-14 20:51:56 UTC (rev 5414)
@@ -13,7 +13,7 @@
xmlns:foaf="http://xmlns.com/foaf/0.1/"
xmlns:dc="http://purl.org/dc/elements/1.1/">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-dmba.owl">
- <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-dmba/2018-09-10/uberon/bridge/uberon-bridge-to-dmba.owl"/>
+ <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-dmba/2018-10-14/uberon/bridge/uberon-bridge-to-dmba.owl"/>
<rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://purl.obolibrary.org/obo/uberon/references/reference_0000026</rdfs:seeAlso>
</owl:Ontology>
Modified: uberon/trunk/bridge/uberon-bridge-to-efo.obo
===================================================================
--- uberon/trunk/bridge/uberon-bridge-to-efo.obo 2018-09-10 23:09:31 UTC (rev 5413)
+++ uberon/trunk/bridge/uberon-bridge-to-efo.obo 2018-10-14 20:51:56 UTC (rev 5414)
@@ -1,5 +1,5 @@
ontology: uberon/bridge/uberon-bridge-to-efo
-data-version: 2018-09-10
+data-version: 2018-10-14
property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI
[Term]
Modified: uberon/trunk/bridge/uberon-bridge-to-efo.owl
===================================================================
--- uberon/trunk/bridge/uberon-bridge-to-efo.owl 2018-09-10 23:09:31 UTC (rev 5413)
+++ uberon/trunk/bridge/uberon-bridge-to-efo.owl 2018-10-14 20:51:56 UTC (rev 5414)
@@ -13,7 +13,7 @@
xmlns:foaf="http://xmlns.com/foaf/0.1/"
xmlns:dc="http://purl.org/dc/elements/1.1/">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-efo.owl">
- <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-efo/2018-09-10/uberon/bridge/uberon-bridge-to-efo.owl"/>
+ <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-efo/2018-10-14/uberon/bridge/uberon-bridge-to-efo.owl"/>
<rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://purl.obolibrary.org/obo/uberon/references/reference_0000026</rdfs:seeAlso>
</owl:Ontology>
Modified: uberon/trunk/bridge/uberon-bridge-to-ehdaa.obo
===================================================================
--- uberon/trunk/bridge/uberon-bridge-to-ehdaa.obo 2018-09-10 23:09:31 UTC (rev 5413)
+++ uberon/trunk/bridge/uberon-bridge-to-ehdaa.obo 2018-10-14 20:51:56 UTC (rev 5414)
@@ -1,5 +1,5 @@
ontology: uberon/bridge/uberon-bridge-to-ehdaa
-data-version: 2018-09-10
+data-version: 2018-10-14
property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI
[Term]
Modified: uberon/trunk/bridge/uberon-bridge-to-ehdaa.owl
===================================================================
--- uberon/trunk/bridge/uberon-bridge-to-ehdaa.owl 2018-09-10 23:09:31 UTC (rev 5413)
+++ uberon/trunk/bridge/uberon-bridge-to-ehdaa.owl 2018-10-14 20:51:56 UTC (rev 5414)
@@ -13,7 +13,7 @@
xmlns:foaf="http://xmlns.com/foaf/0.1/"
xmlns:dc="http://purl.org/dc/elements/1.1/">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-ehdaa.owl">
- <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-ehdaa/2018-09-10/uberon/bridge/uberon-bridge-to-ehdaa.owl"/>
+ <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-ehdaa/2018-10-14/uberon/bridge/uberon-bridge-to-ehdaa.owl"/>
<rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://purl.obolibrary.org/obo/uberon/references/reference_0000026</rdfs:seeAlso>
</owl:Ontology>
Modified: uberon/trunk/bridge/uberon-bridge-to-ehdaa2.obo
===================================================================
--- uberon/trunk/bridge/uberon-bridge-to-ehdaa2.obo 2018-09-10 23:09:31 UTC (rev 5413)
+++ uberon/trunk/bridge/uberon-bridge-to-ehdaa2.obo 2018-10-14 20:51:56 UTC (rev 5414)
@@ -1,5 +1,5 @@
ontology: uberon/bridge/uberon-bridge-to-ehdaa2
-data-version: 2018-09-10
+data-version: 2018-10-14
property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI
property_value: dc-title "Uberon bridge to ehdaa2" xsd:string
property_value: dc-description "Equivalence axioms between EHDAA2 and Uberon. EHDAA2 replaces EHDAA" xsd:string
Modified: uberon/trunk/bridge/uberon-bridge-to-ehdaa2.owl
===================================================================
--- uberon/trunk/bridge/uberon-bridge-to-ehdaa2.owl 2018-09-10 23:09:31 UTC (rev 5413)
+++ uberon/trunk/bridge/uberon-bridge-to-ehdaa2.owl 2018-10-14 20:51:56 UTC (rev 5414)
@@ -13,7 +13,7 @@
xmlns:foaf="http://xmlns.com/foaf/0.1/"
xmlns:dc="http://purl.org/dc/elements/1.1/">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-ehdaa2.owl">
- <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-ehdaa2/2018-09-10/uberon/bridge/uberon-bridge-to-ehdaa2.owl"/>
+ <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-ehdaa2/2018-10-14/uberon/bridge/uberon-bridge-to-ehdaa2.owl"/>
<dc:contributor rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Jonathan Bard</dc:contributor>
<rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://purl.obolibrary.org/obo/uberon/references/reference_0000026</rdfs:seeAlso>
<terms:references rdf:resource="http://purl.obolibrary.org/obo/uberon.owl"/>
Modified: uberon/trunk/bridge/uberon-bridge-to-emapa.obo
===================================================================
--- uberon/trunk/bridge/uberon-bridge-to-emapa.obo 2018-09-10 23:09:31 UTC (rev 5413)
+++ uberon/trunk/bridge/uberon-bridge-to-emapa.obo 2018-10-14 20:51:56 UTC (rev 5414)
@@ -1,5 +1,5 @@
ontology: uberon/bridge/uberon-bridge-to-emapa
-data-version: 2018-09-10
+data-version: 2018-10-14
property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI
property_value: dc-title "Uberon bridge to emapa" xsd:string
property_value: dc-description "Taxonomic equivalence axioms between EMAPA (abstract developmental mouse) and Uberon" xsd:string
Modified: uberon/trunk/bridge/uberon-bridge-to-emapa.owl
===================================================================
--- uberon/trunk/bridge/uberon-bridge-to-emapa.owl 2018-09-10 23:09:31 UTC (rev 5413)
+++ uberon/trunk/bridge/uberon-bridge-to-emapa.owl 2018-10-14 20:51:56 UTC (rev 5414)
@@ -13,7 +13,7 @@
xmlns:foaf="http://xmlns.com/foaf/0.1/"
xmlns:dc="http://purl.org/dc/elements/1.1/">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-emapa.owl">
- <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-emapa/2018-09-10/uberon/bridge/uberon-bridge-to-emapa.owl"/>
+ <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-emapa/2018-10-14/uberon/bridge/uberon-bridge-to-emapa.owl"/>
<dc:creator rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Aurelie Comte</dc:creator>
<dc:creator rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Anne Niknejad</dc:creator>
<terms:references rdf:resource="http://purl.obolibrary.org/obo/fma.owl"/>
Modified: uberon/trunk/bridge/uberon-bridge-to-fbbt.obo
===================================================================
--- uberon/trunk/bridge/uberon-bridge-to-fbbt.obo 2018-09-10 23:09:31 UTC (rev 5413)
+++ uberon/trunk/bridge/uberon-bridge-to-fbbt.obo 2018-10-14 20:51:56 UTC (rev 5414)
@@ -1,5 +1,5 @@
ontology: uberon/bridge/uberon-bridge-to-fbbt
-data-version: 2018-09-10
+data-version: 2018-10-14
property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI
property_value: dc-title "Uberon bridge to fbbt" xsd:string
property_...
[truncated message content] |
|
From: <cmu...@us...> - 2018-09-10 23:10:11
|
Revision: 5413
http://sourceforge.net/p/obo/svn/5413
Author: cmungall
Date: 2018-09-10 23:09:31 +0000 (Mon, 10 Sep 2018)
Log Message:
-----------
new release
Modified Paths:
--------------
uberon/trunk/basic.obo
uberon/trunk/basic.owl
uberon/trunk/bridge/uberon-bridge-to-aao.obo
uberon/trunk/bridge/uberon-bridge-to-aao.owl
uberon/trunk/bridge/uberon-bridge-to-aeo.obo
uberon/trunk/bridge/uberon-bridge-to-aeo.owl
uberon/trunk/bridge/uberon-bridge-to-bila.obo
uberon/trunk/bridge/uberon-bridge-to-bila.owl
uberon/trunk/bridge/uberon-bridge-to-caro.obo
uberon/trunk/bridge/uberon-bridge-to-caro.owl
uberon/trunk/bridge/uberon-bridge-to-dhba.obo
uberon/trunk/bridge/uberon-bridge-to-dhba.owl
uberon/trunk/bridge/uberon-bridge-to-dmba.obo
uberon/trunk/bridge/uberon-bridge-to-dmba.owl
uberon/trunk/bridge/uberon-bridge-to-efo.obo
uberon/trunk/bridge/uberon-bridge-to-efo.owl
uberon/trunk/bridge/uberon-bridge-to-ehdaa.obo
uberon/trunk/bridge/uberon-bridge-to-ehdaa.owl
uberon/trunk/bridge/uberon-bridge-to-ehdaa2.obo
uberon/trunk/bridge/uberon-bridge-to-ehdaa2.owl
uberon/trunk/bridge/uberon-bridge-to-emapa.obo
uberon/trunk/bridge/uberon-bridge-to-emapa.owl
uberon/trunk/bridge/uberon-bridge-to-fbbt.obo
uberon/trunk/bridge/uberon-bridge-to-fbbt.owl
uberon/trunk/bridge/uberon-bridge-to-fbdv.obo
uberon/trunk/bridge/uberon-bridge-to-fbdv.owl
uberon/trunk/bridge/uberon-bridge-to-fma.obo
uberon/trunk/bridge/uberon-bridge-to-fma.owl
uberon/trunk/bridge/uberon-bridge-to-go.obo
uberon/trunk/bridge/uberon-bridge-to-go.owl
uberon/trunk/bridge/uberon-bridge-to-hao.obo
uberon/trunk/bridge/uberon-bridge-to-hao.owl
uberon/trunk/bridge/uberon-bridge-to-hba.obo
uberon/trunk/bridge/uberon-bridge-to-hba.owl
uberon/trunk/bridge/uberon-bridge-to-ma.obo
uberon/trunk/bridge/uberon-bridge-to-ma.owl
uberon/trunk/bridge/uberon-bridge-to-mba.obo
uberon/trunk/bridge/uberon-bridge-to-mba.owl
uberon/trunk/bridge/uberon-bridge-to-mfo.obo
uberon/trunk/bridge/uberon-bridge-to-mfo.owl
uberon/trunk/bridge/uberon-bridge-to-og.obo
uberon/trunk/bridge/uberon-bridge-to-og.owl
uberon/trunk/bridge/uberon-bridge-to-pba.obo
uberon/trunk/bridge/uberon-bridge-to-pba.owl
uberon/trunk/bridge/uberon-bridge-to-sctid.obo
uberon/trunk/bridge/uberon-bridge-to-sctid.owl
uberon/trunk/bridge/uberon-bridge-to-spd.obo
uberon/trunk/bridge/uberon-bridge-to-spd.owl
uberon/trunk/bridge/uberon-bridge-to-tads.obo
uberon/trunk/bridge/uberon-bridge-to-tads.owl
uberon/trunk/bridge/uberon-bridge-to-tao.obo
uberon/trunk/bridge/uberon-bridge-to-tao.owl
uberon/trunk/bridge/uberon-bridge-to-tgma.obo
uberon/trunk/bridge/uberon-bridge-to-tgma.owl
uberon/trunk/bridge/uberon-bridge-to-vsao.obo
uberon/trunk/bridge/uberon-bridge-to-vsao.owl
uberon/trunk/bridge/uberon-bridge-to-wbbt.obo
uberon/trunk/bridge/uberon-bridge-to-wbbt.owl
uberon/trunk/bridge/uberon-bridge-to-wbls.obo
uberon/trunk/bridge/uberon-bridge-to-wbls.owl
uberon/trunk/bridge/uberon-bridge-to-xao.obo
uberon/trunk/bridge/uberon-bridge-to-xao.owl
uberon/trunk/bridge/uberon-bridge-to-zfa.obo
uberon/trunk/bridge/uberon-bridge-to-zfa.owl
uberon/trunk/bridge/uberon-bridge-to-zfs.obo
uberon/trunk/bridge/uberon-bridge-to-zfs.owl
uberon/trunk/chebi_import.owl
uberon/trunk/cl_import.owl
uberon/trunk/composite-metazoan-basic.obo
uberon/trunk/composite-metazoan.obo
uberon/trunk/composite-metazoan.owl
uberon/trunk/composite-vertebrate.obo
uberon/trunk/composite-vertebrate.owl
uberon/trunk/core.obo
uberon/trunk/core.owl
uberon/trunk/diffs/uberon-diff.md
uberon/trunk/ext.obo
uberon/trunk/ext.owl
uberon/trunk/go_import.owl
uberon/trunk/merged.obo
uberon/trunk/merged.owl
uberon/trunk/ncbitaxon_import.owl
uberon/trunk/pato_import.owl
uberon/trunk/pr_import.owl
uberon/trunk/reports/stages-human-report.tsv
uberon/trunk/reports/stages-metazoan-report.tsv
uberon/trunk/reports/stages-mouse-report.tsv
uberon/trunk/reports/stages-xenopus-report.tsv
uberon/trunk/subsets/amniote-basic.obo
uberon/trunk/subsets/amniote-basic.owl
uberon/trunk/subsets/circulatory-minimal.obo
uberon/trunk/subsets/cranial-minimal.obo
uberon/trunk/subsets/cumbo.obo
uberon/trunk/subsets/digestive-minimal.obo
uberon/trunk/subsets/efo-slim.obo
uberon/trunk/subsets/efo-slim.owl
uberon/trunk/subsets/euarchontoglires-basic.obo
uberon/trunk/subsets/euarchontoglires-basic.owl
uberon/trunk/subsets/excretory-minimal.obo
uberon/trunk/subsets/mouse-view.owl
uberon/trunk/subsets/musculoskeletal-minimal.obo
uberon/trunk/subsets/nervous-minimal.obo
uberon/trunk/subsets/sensory-minimal.obo
uberon/trunk/subsets/uberon-with-isa-for-FMA-MA-ZFA.obo
uberon/trunk/uberon-base.owl
uberon/trunk/uberon.obo
uberon/trunk/uberon.owl
Modified: uberon/trunk/basic.obo
===================================================================
--- uberon/trunk/basic.obo 2018-08-02 19:40:18 UTC (rev 5412)
+++ uberon/trunk/basic.obo 2018-09-10 23:09:31 UTC (rev 5413)
@@ -1,6 +1,6 @@
format-version: 1.2
-data-version: uberon/releases/2018-07-30/basic.owl
-date: 30:07:2018 19:18
+data-version: uberon/releases/2018-09-10/basic.owl
+date: 10:09:2018 12:40
saved-by: cjm
subsetdef: cumbo "CUMBO"
subsetdef: cyclostome_subset "cyclostome structures"
@@ -46,7 +46,7 @@
default-namespace: uberon
remark: Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/TEMP>) VersionIRI(<null>))) [Axioms: 437 Logical Axioms: 0]
remark: Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/uberon-bridge-to-bfo.owl>) VersionIRI(<null>))) [Axioms: 20 Logical Axioms: 9]
-remark: Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/uberon/ext.owl>) VersionIRI(<null>))) [Axioms: 26298 Logical Axioms: 4860]
+remark: Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/uberon/ext.owl>) VersionIRI(<null>))) [Axioms: 26316 Logical Axioms: 4863]
remark: Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/uberon/insect-anatomy.owl>) VersionIRI(<null>))) [Axioms: 2098 Logical Axioms: 650]
remark: Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/uberon/reflexivity_axioms.owl>) VersionIRI(<null>))) [Axioms: 2 Logical Axioms: 2]
treat-xrefs-as-equivalent: AEO
@@ -34419,6 +34419,7 @@
id: UBERON:0001967
name: reticular lamina of epithelium
def: "A thin extracellular layer that sometimes lies below the basal lamina, is composed chiefly of collagenous fibers, and serves to anchor the basal lamina to underlying connective tissue." [http://mw1.merriam-webster.com/medical/reticular%20lamina]
+comment: See https://github.com/obophenotype/uberon/issues/1436
subset: uberon_slim
synonym: "fibroreticular lamina" EXACT [FMA:62924]
synonym: "lamina fibroreticularis" EXACT LATIN [FMA:62924]
@@ -87791,6 +87792,7 @@
xref: VHOG:0000690
xref: ZFA:0000467
is_a: UBERON:0002513 {source="ZFA"} ! endochondral bone
+is_a: UBERON:0004768 ! bone of lower jaw
is_a: UBERON:0008907 {source="ZFA"} ! dermal bone
relationship: develops_from UBERON:0011002 {source="ZFA"} ! articular cartilage element
property_value: dc-contributor https://github.com/alex-dececchi
@@ -130140,6 +130142,7 @@
id: UBERON:0009962
name: excretory gland
def: "A gland that discharges its secretion through a duct opening on an internal or external surface of the body, as a lacrimal gland." [Dorlands_Medical_Dictionary:MerckSource]
+synonym: "renal gland" NARROW [https://github.com/obophenotype/uberon/issues/1450]
xref: BTO:0000431
is_a: UBERON:0002530 {source="BTO"} ! gland
relationship: part_of UBERON:0001008 ! renal system
@@ -153449,15 +153452,8 @@
[Term]
id: UBERON:0013763
-name: sensory epithelium of spiral organ
-def: "A reticular lamina of epithelium that is part of a sensory epithelium." [OBOL:automatic]
-synonym: "cochlea sensory epithelium" RELATED []
-synonym: "cochlear sensory epithelium" RELATED []
-synonym: "inner ear neuroepithelium" RELATED []
-is_a: UBERON:0001967 ! reticular lamina of epithelium
-intersection_of: UBERON:0001967 ! reticular lamina of epithelium
-intersection_of: part_of UBERON:0006934 ! sensory epithelium
-relationship: part_of UBERON:0006934 ! sensory epithelium
+name: obsolete sensory epithelium of spiral organ
+is_obsolete: true
[Term]
id: UBERON:0013764
@@ -183957,6 +183953,63 @@
relationship: part_of UBERON:0002372 {source="NCIT"} ! tonsil
[Term]
+id: UBERON:0036285
+name: wall of left ventricle
+def: "Wall of ventricle which is continuous with the wall of aorta." [FMA:9556]
+synonym: "left ventricular wall" EXACT [FMA:9556]
+synonym: "pared del ventrC-culo izquierdo@es" EXACT [FMA:9556]
+xref: FMA:9556
+is_a: UBERON:0004784 {source="FMA"} ! heart ventricle wall
+intersection_of: UBERON:0004784 ! heart ventricle wall
+intersection_of: part_of UBERON:0002084 ! heart left ventricle
+relationship: part_of UBERON:0002084 {source="FMA"} ! heart left ventricle
+
+[Term]
+id: UBERON:0036286
+name: wall of right ventricle
+def: "Wall of ventricle which is continuous with the wall of pulmonary trunk." [FMA:9533]
+synonym: "pared del ventrC-culo derecho@es" EXACT [FMA:9533]
+synonym: "right ventricular wall" EXACT [FMA:9533]
+xref: FMA:9533
+is_a: UBERON:0004784 {source="FMA"} ! heart ventricle wall
+intersection_of: UBERON:0004784 ! heart ventricle wall
+intersection_of: part_of UBERON:0002080 ! heart right ventricle
+relationship: part_of UBERON:0002080 {source="FMA"} ! heart right ventricle
+
+[Term]
+id: UBERON:0036288
+name: anterior wall of left ventricle
+xref: FMA:9560
+is_a: UBERON:0036285 ! wall of left ventricle
+relationship: part_of UBERON:0002084 ! heart left ventricle
+
+[Term]
+id: UBERON:0036289
+name: anterior wall of right ventricle
+def: "Region of wall of right ventricle which is continuous with the lateral and septal walls of right ventricle." [FMA:9553]
+xref: FMA:9553
+is_a: UBERON:0036286 ! wall of right ventricle
+relationship: part_of UBERON:0002080 ! heart right ventricle
+
+[Term]
+id: UBERON:0036290
+name: myocardium of anterior wall of left ventricle
+xref: FMA:87177
+is_a: UBERON:0006566 ! left ventricle myocardium
+intersection_of: UBERON:0002349 ! myocardium
+intersection_of: part_of UBERON:0036288 ! anterior wall of left ventricle
+relationship: part_of UBERON:0036288 ! anterior wall of left ventricle
+
+[Term]
+id: UBERON:0036291
+name: myocardium of anterior wall of right ventricle
+xref: FMA:260877
+is_a: UBERON:0006567 ! right ventricle myocardium
+intersection_of: UBERON:0002349 ! myocardium
+intersection_of: part_of UBERON:0036289 ! anterior wall of right ventricle
+relationship: part_of UBERON:0036289 ! anterior wall of right ventricle
+
+[Term]
id: UBERON:1000000
name: chin ventral margin
def: "Subdivision of the head consisting of the area along the lower edge of the chin." [https://github.com/obophenotype/uberon/issues/34, UBERON:EJS]
@@ -214651,6 +214704,29 @@
created_by: WD
[Term]
+id: UBERON:4300239
+name: hind flipper
+def: "Hindlimb that is used to propel an animal through water." []
+synonym: "hindflipper" EXACT []
+is_a: UBERON:0002103 ! hindlimb
+created_by: WD
+
+[Term]
+id: UBERON:4300240
+name: rostral ossicle
+def: "Ossicle that surrounds the sensory canals of the snout when passing from the ethmoidal commissure to the infraorbital series and have first been noticed by Nybelin [14] in Elops. From: Filleul and Lavoué. (2001). Basal teleosts and the question of elopomorph monophyly. Morphological and molecular approaches. Comptes rendus de l'Académie des sciences. Série III, Sciences de la vie. 324. 393-9. 10.1016/S0764-4469(00)01302-0." []
+is_a: UBERON:0010911 ! ossicle
+created_by: WD
+
+[Term]
+id: UBERON:4300241
+name: ethmoid commissure
+def: "Sensory canal that traverses the rostral bone." []
+synonym: "ethmoid lateral line commissure" EXACT []
+is_a: UBERON:2001612 ! sensory canal
+created_by: WD
+
+[Term]
id: UBERON:4400000
name: metapterygium cartilage
namespace: none
Modified: uberon/trunk/basic.owl
===================================================================
--- uberon/trunk/basic.owl 2018-08-02 19:40:18 UTC (rev 5412)
+++ uberon/trunk/basic.owl 2018-09-10 23:09:31 UTC (rev 5413)
@@ -17,7 +17,7 @@
xmlns:dc="http://purl.org/dc/elements/1.1/"
xmlns:insect-anatomy="http://purl.obolibrary.org/obo/uberon/insect-anatomy#">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/basic.owl">
- <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/releases/2018-07-30/basic.owl"/>
+ <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/releases/2018-09-10/basic.owl"/>
<dc:contributor rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Lydie Lane</dc:contributor>
<dc:contributor rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Paula Mabee</dc:contributor>
<doap:bug-database rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">https://github.com/obophenotype/uberon/issues/</doap:bug-database>
@@ -112,7 +112,6 @@
<dc:source rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PMID:16417468 Forgotten and novel aspects in pancreas development, Pieler and Chen</dc:source>
<oboInOwl:treat-xrefs-as-reverse-genus-differentia rdf:datatype="http://www.w3.org/2001/XMLSchema#string">WBls part_of NCBITaxon:6237</oboInOwl:treat-xrefs-as-reverse-genus-differentia>
<oboInOwl:treat-xrefs-as-reverse-genus-differentia rdf:datatype="http://www.w3.org/2001/XMLSchema#string">FBdv part_of NCBITaxon:7227</oboInOwl:treat-xrefs-as-reverse-genus-differentia>
- <rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/uberon/ext.owl>) VersionIRI(<null>))) [Axioms: 26298 Logical Axioms: 4860]</rdfs:comment>
<oboInOwl:treat-xrefs-as-reverse-genus-differentia rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PBA part_of NCBITaxon:9443</oboInOwl:treat-xrefs-as-reverse-genus-differentia>
<dc:contributor rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Anna Anagnostopoulos</dc:contributor>
<oboInOwl:treat-xrefs-as-reverse-genus-differentia rdf:datatype="http://www.w3.org/2001/XMLSchema#string">OlatDv part_of NCBITaxon:8089</oboInOwl:treat-xrefs-as-reverse-genus-differentia>
@@ -176,6 +175,7 @@
<oboInOwl:treat-xrefs-as-reverse-genus-differentia rdf:datatype="http://www.w3.org/2001/XMLSchema#string">HBA part_of NCBITaxon:9606</oboInOwl:treat-xrefs-as-reverse-genus-differentia>
<dc:contributor rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Hilmar Lapp</dc:contributor>
<dc:contributor rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Paul Sereno</dc:contributor>
+ <rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/uberon/ext.owl>) VersionIRI(<null>))) [Axioms: 26316 Logical Axioms: 4863]</rdfs:comment>
<dc:source rdf:resource="http://purl.obolibrary.org/obo/fma.owl"/>
<dc:source rdf:resource="http://purl.obolibrary.org/obo/caro.owl"/>
<dc:source rdf:resource="http://braininfo.rprc.washington.edu/"/>
@@ -117137,6 +117137,7 @@
<oboInOwl:hasRelatedSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">reticular membrane</oboInOwl:hasRelatedSynonym>
<oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">UBERON:0001967</oboInOwl:id>
<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/uberon/core#uberon_slim"/>
+ <rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string">See https://github.com/obophenotype/uberon/issues/1436</rdfs:comment>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">reticular lamina of epithelium</rdfs:label>
</owl:Class>
<owl:Axiom>
@@ -325184,6 +325185,7 @@
<owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0004744">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0002513"/>
+ <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0004768"/>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0008907"/>
<rdfs:subClassOf>
<owl:Restriction>
@@ -490675,6 +490677,7 @@
<obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A gland that discharges its secretion through a duct opening on an internal or external surface of the body, as a lacrimal gland.</obo:IAO_0000115>
<obo:IAO_0000116 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">TODO - child terms</obo:IAO_0000116>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">BTO:0000431</oboInOwl:hasDbXref>
+ <oboInOwl:hasNarrowSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">renal gland</oboInOwl:hasNarrowSynonym>
<oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">uberon</oboInOwl:hasOBONamespace>
<oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">UBERON:0009962</oboInOwl:id>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">excretory gland</rdfs:label>
@@ -490691,6 +490694,12 @@
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A gland that discharges its secretion through a duct opening on an internal or external surface of the body, as a lacrimal gland.</owl:annotatedTarget>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Dorlands_Medical_Dictionary:MerckSource</oboInOwl:hasDbXref>
</owl:Axiom>
+ <owl:Axiom>
+ <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/UBERON_0009962"/>
+ <owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym"/>
+ <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">renal gland</owl:annotatedTarget>
+ <oboInOwl:hasDbXref rdf:resource="https://github.com/obophenotype/uberon/issues/1450"/>
+ </owl:Axiom>
@@ -580848,38 +580857,11 @@
<!-- http://purl.obolibrary.org/obo/UBERON_0013763 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0013763">
- <owl:equivalentClass>
- <owl:Class>
- <owl:intersectionOf rdf:parseType="Collection">
- <rdf:Description rdf:about="http://purl.obolibrary.org/obo/UBERON_0001967"/>
- <owl:Restriction>
- <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
- <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_0006934"/>
- </owl:Restriction>
- </owl:intersectionOf>
- </owl:Class>
- </owl:equivalentClass>
- <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0001967"/>
- <rdfs:subClassOf>
- <owl:Restriction>
- <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
- <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_0006934"/>
- </owl:Restriction>
- </rdfs:subClassOf>
- <obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A reticular lamina of epithelium that is part of a sensory epithelium.</obo:IAO_0000115>
<oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">uberon</oboInOwl:hasOBONamespace>
- <oboInOwl:hasRelatedSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">cochlea sensory epithelium</oboInOwl:hasRelatedSynonym>
- <oboInOwl:hasRelatedSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">cochlear sensory epithelium</oboInOwl:hasRelatedSynonym>
- <oboInOwl:hasRelatedSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">inner ear neuroepithelium</oboInOwl:hasRelatedSynonym>
<oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">UBERON:0013763</oboInOwl:id>
- <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">sensory epithelium of spiral organ</rdfs:label>
+ <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">obsolete sensory epithelium of spiral organ</rdfs:label>
+ <owl:deprecated rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</owl:deprecated>
</owl:Class>
- <owl:Axiom>
- <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/UBERON_0013763"/>
- <owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
- <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A reticular lamina of epithelium that is part of a sensory epithelium.</owl:annotatedTarget>
- <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">OBOL:automatic</oboInOwl:hasDbXref>
- </owl:Axiom>
@@ -691890,6 +691872,241 @@
+ <!-- http://purl.obolibrary.org/obo/UBERON_0036285 -->
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0036285">
+ <owl:equivalentClass>
+ <owl:Class>
+ <owl:intersectionOf rdf:parseType="Collection">
+ <rdf:Description rdf:about="http://purl.obolibrary.org/obo/UBERON_0004784"/>
+ <owl:Restriction>
+ <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
+ <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_0002084"/>
+ </owl:Restriction>
+ </owl:intersectionOf>
+ </owl:Class>
+ </owl:equivalentClass>
+ <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0004784"/>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
+ <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_0002084"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Wall of ventricle which is continuous with the wall of aorta.</obo:IAO_0000115>
+ <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">FMA:9556</oboInOwl:hasDbXref>
+ <oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">left ventricular wall</oboInOwl:hasExactSynonym>
+ <oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">pared del ventrC-culo izquierdo@es</oboInOwl:hasExactSynonym>
+ <oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">uberon</oboInOwl:hasOBONamespace>
+ <oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">UBERON:0036285</oboInOwl:id>
+ <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">wall of left ventricle</rdfs:label>
+ </owl:Class>
+ <owl:Axiom>
+ <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/UBERON_0036285"/>
+ <owl:annotatedProperty rdf:resource="http://www.w3.org/2000/01/rdf-schema#subClassOf"/>
+ <owl:annotatedTarget rdf:resource="http://purl.obolibrary.org/obo/UBERON_0004784"/>
+ <oboInOwl:source rdf:datatype="http://www.w3.org/2001/XMLSchema#string">FMA</oboInOwl:source>
+ </owl:Axiom>
+ <owl:Axiom>
+ <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/UBERON_0036285"/>
+ <owl:annotatedProperty rdf:resource="http://www.w3.org/2000/01/rdf-schema#subClassOf"/>
+ <owl:annotatedTarget>
+ <owl:Restriction>
+ <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
+ <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_0002084"/>
+ </owl:Restriction>
+ </owl:annotatedTarget>
+ <oboInOwl:source rdf:datatype="http://www.w3.org/2001/XMLSchema#string">FMA</oboInOwl:source>
+ </owl:Axiom>
+ <owl:Axiom>
+ <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/UBERON_0036285"/>
+ <owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
+ <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Wall of ventricle which is continuous with the wall of aorta.</owl:annotatedTarget>
+ <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">FMA:9556</oboInOwl:hasDbXref>
+ </owl:Axiom>
+ <owl:Axiom>
+ <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/UBERON_0036285"/>
+ <owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"/>
+ <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">left ventricular wall</owl:annotatedTarget>
+ <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">FMA:9556</oboInOwl:hasDbXref>
+ </owl:Axiom>
+ <owl:Axiom>
+ <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/UBERON_0036285"/>
+ <owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"/>
+ <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">pared del ventrC-culo izquierdo@es</owl:annotatedTarget>
+ <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">FMA:9556</oboInOwl:hasDbXref>
+ </owl:Axiom>
+
+
+
+ <!-- http://purl.obolibrary.org/obo/UBERON_0036286 -->
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0036286">
+ <owl:equivalentClass>
+ <owl:Class>
+ <owl:intersectionOf rdf:parseType="Collection">
+ <rdf:Description rdf:about="http://purl.obolibrary.org/obo/UBERON_0004784"/>
+ <owl:Restriction>
+ <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
+ <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_0002080"/>
+ </owl:Restriction>
+ </owl:intersectionOf>
+ </owl:Class>
+ </owl:equivalentClass>
+ <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0004784"/>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
+ <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_0002080"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Wall of ventricle which is continuous with the wall of pulmonary trunk.</obo:IAO_0000115>
+ <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">FMA:9533</oboInOwl:hasDbXref>
+ <oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">pared del ventrC-culo derecho@es</oboInOwl:hasExactSynonym>
+ <oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">right ventricular wall</oboInOwl:hasExactSynonym>
+ <oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">uberon</oboInOwl:hasOBONamespace>
+ <oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">UBERON:0036286</oboInOwl:id>
+ <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">wall of right ventricle</rdfs:label>
+ </owl:Class>
+ <owl:Axiom>
+ <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/UBERON_0036286"/>
+ <owl:annotatedProperty rdf:resource="http://www.w3.org/2000/01/rdf-schema#subClassOf"/>
+ <owl:annotatedTarget rdf:resource="http://purl.obolibrary.org/obo/UBERON_0004784"/>
+ <oboInOwl:source rdf:datatype="http://www.w3.org/2001/XMLSchema#string">FMA</oboInOwl:source>
+ </owl:Axiom>
+ <owl:Axiom>
+ <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/UBERON_0036286"/>
+ <owl:annotatedProperty rdf:resource="http://www.w3.org/2000/01/rdf-schema#subClassOf"/>
+ <owl:annotatedTarget>
+ <owl:Restriction>
+ <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
+ <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_0002080"/>
+ </owl:Restriction>
+ </owl:annotatedTarget>
+ <oboInOwl:source rdf:datatype="http://www.w3.org/2001/XMLSchema#string">FMA</oboInOwl:source>
+ </owl:Axiom>
+ <owl:Axiom>
+ <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/UBERON_0036286"/>
+ <owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
+ <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Wall of ventricle which is continuous with the wall of pulmonary trunk.</owl:annotatedTarget>
+ <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">FMA:9533</oboInOwl:hasDbXref>
+ </owl:Axiom>
+ <owl:Axiom>
+ <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/UBERON_0036286"/>
+ <owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"/>
+ <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">pared del ventrC-culo derecho@es</owl:annotatedTarget>
+ <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">FMA:9533</oboInOwl:hasDbXref>
+ </owl:Axiom>
+ <owl:Axiom>
+ <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/UBERON_0036286"/>
+ <owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"/>
+ <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">right ventricular wall</owl:annotatedTarget>
+ <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">FMA:9533</oboInOwl:hasDbXref>
+ </owl:Axiom>
+
+
+
+ <!-- http://purl.obolibrary.org/obo/UBERON_0036288 -->
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0036288">
+ <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0036285"/>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
+ <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_0002084"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">FMA:9560</oboInOwl:hasDbXref>
+ <oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">uberon</oboInOwl:hasOBONamespace>
+ <oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">UBERON:0036288</oboInOwl:id>
+ <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">anterior wall of left ventricle</rdfs:label>
+ </owl:Class>
+
+
+
+ <!-- http://purl.obolibrary.org/obo/UBERON_0036289 -->
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0036289">
+ <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0036286"/>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
+ <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_0002080"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Region of wall of right ventricle which is continuous with the lateral and septal walls of right ventricle.</obo:IAO_0000115>
+ <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">FMA:9553</oboInOwl:hasDbXref>
+ <oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">uberon</oboInOwl:hasOBONamespace>
+ <oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">UBERON:0036289</oboInOwl:id>
+ <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">anterior wall of right ventricle</rdfs:label>
+ </owl:Class>
+ <owl:Axiom>
+ <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/UBERON_0036289"/>
+ <owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
+ <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Region of wall of right ventricle which is continuous with the lateral and septal walls of right ventricle.</owl:annotatedTarget>
+ <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">FMA:9553</oboInOwl:hasDbXref>
+ </owl:Axiom>
+
+
+
+ <!-- http://purl.obolibrary.org/obo/UBERON_0036290 -->
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0036290">
+ <owl:equivalentClass>
+ <owl:Class>
+ <owl:intersectionOf rdf:parseType="Collection">
+ <rdf:Description rdf:about="http://purl.obolibrary.org/obo/UBERON_0002349"/>
+ <owl:Restriction>
+ <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
+ <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_0036288"/>
+ </owl:Restriction>
+ </owl:intersectionOf>
+ </owl:Class>
+ </owl:equivalentClass>
+ <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0006566"/>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
+ <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_0036288"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">FMA:87177</oboInOwl:hasDbXref>
+ <oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">uberon</oboInOwl:hasOBONamespace>
+ <oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">UBERON:0036290</oboInOwl:id>
+ <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">myocardium of anterior wall of left ventricle</rdfs:label>
+ </owl:Class>
+
+
+
+ <!-- http://purl.obolibrary.org/obo/UBERON_0036291 -->
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0036291">
+ <owl:equivalentClass>
+ <owl:Class>
+ <owl:intersectionOf rdf:parseType="Collection">
+ <rdf:Description rdf:about="http://purl.obolibrary.org/obo/UBERON_0002349"/>
+ <owl:Restriction>
+ <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
+ <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_0036289"/>
+ </owl:Restriction>
+ </owl:intersectionOf>
+ </owl:Class>
+ </owl:equivalentClass>
+ <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0006567"/>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
+ <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_0036289"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">FMA:260877</oboInOwl:hasDbXref>
+ <oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">uberon</oboInOwl:hasOBONamespace>
+ <oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">UBERON:0036291</oboInOwl:id>
+ <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">myocardium of anterior wall of right ventricle</rdfs:label>
+ </owl:Class>
+
+
+
<!-- http://purl.obolibrary.org/obo/UBERON_1000000 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_1000000">
@@ -700871,7 +701088,7 @@
<owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_2000637">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_2001457"/>
- <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/uberon/ext.owl/UBERON_4300190"/>
+ <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_4300190"/>
<obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Postcranial axial cartilage and Weberian ossicle that is located dorsal to the scaphium. The claustrum cartilage is bilaterally paired.</obo:IAO_0000115>
<core1:provenance_notes rdf:datatype="http://www.w3.org/2001/XMLSchema#string">This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon</core1:provenance_notes>
<oboInOwl:created_by rdf:datatype="http://www.w3.org/2001/XMLSchema#string">teleost_anatomy_curators</oboInOwl:created_by>
@@ -709999,7 +710216,7 @@
<owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_2001163">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_2000442"/>
- <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/uberon/ext.owl/UBERON_4300219"/>
+ <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_4300219"/>
<core1:provenance_notes rdf:datatype="http://www.w3.org/2001/XMLSchema#string">This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon</core1:provenance_notes>
<oboInOwl:created_by rdf:datatype="http://www.w3.org/2001/XMLSchema#string">teleost_anatomy_curators</oboInOwl:created_by>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">ZFA:0001163</oboInOwl:hasDbXref>
@@ -710013,7 +710230,7 @@
<owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_2001164">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_2000442"/>
- <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/uberon/ext.owl/UBERON_4300218"/>
+ <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_4300218"/>
<core1:provenance_notes rdf:datatype="http://www.w3.org/2001/XMLSchema#string">This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon</core1:provenance_notes>
<oboInOwl:created_by rdf:datatype="http://www.w3.org/2001/XMLSchema#string">teleost_anatomy_curators</oboInOwl:created_by>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">ZFA:0001164</oboInOwl:hasDbXref>
@@ -710034,7 +710251,7 @@
<owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_2001165">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_2000442"/>
- <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/uberon/ext.owl/UBERON_4300217"/>
+ <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_4300217"/>
<core1:provenance_notes rdf:datatype="http://www.w3.org/2001/XMLSchema#string">This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon</core1:provenance_notes>
<oboInOwl:created_by rdf:datatype="http://www.w3.org/2001/XMLSchema#string">teleost_anatomy_curators</oboInOwl:created_by>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">ZFA:0001165</oboInOwl:hasDbXref>
@@ -710055,7 +710272,7 @@
<owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_2001166">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_2000442"/>
- <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/uberon/ext.owl/UBERON_4300221"/>
+ <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_4300221"/>
<core1:provenance_notes rdf:datatype="http://www.w3.org/2001/XMLSchema#string">This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon</core1:provenance_notes>
<oboInOwl:created_by rdf:datatype="http://www.w3.org/2001/XMLSchema#string">teleost_anatomy_curators</oboInOwl:created_by>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">ZFA:0001166</oboInOwl:hasDbXref>
@@ -710340,7 +710557,7 @@
<!-- http://purl.obolibrary.org/obo/UBERON_2001190 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_2001190">
- <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/uberon/ext.owl/UBERON_4300223"/>
+ <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_4300223"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
@@ -710376,7 +710593,7 @@
<owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_2001191">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_2000442"/>
- <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/uberon/ext.owl/UBERON_4300214"/>
+ <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_4300214"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0002202"/>
@@ -710418,7 +710635,7 @@
<owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_2001192">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_2000442"/>
- <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/uberon/ext.owl/UBERON_4300215"/>
+ <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_4300215"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0002202"/>
@@ -710460,7 +710677,7 @@
<owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_2001193">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_2000442"/>
- <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/uberon/ext.owl/UBERON_4300220"/>
+ <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_4300220"/>
<core1:provenance_notes rdf:datatype="http://www.w3.org/2001/XMLSchema#string">This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon</core1:provenance_notes>
<oboInOwl:created_by rdf:datatype="http://www.w3.org/2001/XMLSchema#string">teleost_anatomy_curators</oboInOwl:created_by>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">ZFA:0001193</oboInOwl:hasDbXref>
@@ -715821,7 +716038,7 @@
<!-- http://purl.obolibrary.org/obo/UBERON_2001582 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_2001582">
- <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/uberon/ext.owl/UBERON_4300223"/>
+ <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_4300223"/>
<core1:provenance_notes rdf:datatype="http://www.w3.org/2001/XMLSchema#string">This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon</core1:provenance_notes>
<oboInOwl:created_by rdf:datatype="http://www.w3.org/2001/XMLSchema#string">teleost_anatomy_curators</oboInOwl:created_by>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">ZFA:0001582</oboInOwl:hasDbXref>
@@ -716062,7 +716279,7 @@
<owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_2001592">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0002513"/>
- <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/uberon/ext.owl/UBERON_4300190"/>
+ <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_4300190"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0002202"/>
@@ -722236,7 +722453,7 @@
<owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_2001869">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_4300036"/>
- <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/uberon/ext.owl/UBERON_4300214"/>
+ <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_4300214"/>
<obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Postcranial axial cartilage located dorsal to vertebra 2.</obo:IAO_0000115>
<core1:provenance_notes rdf:datatype="http://www.w3.org/2001/XMLSchema#string">This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon</core1:provenance_notes>
<oboInOwl:created_by rdf:datatype="http://www.w3.org/2001/XMLSchema#string">teleost_anatomy_curators</oboInOwl:created_by>
@@ -722256,7 +722473,7 @@
<owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_2001870">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_4300036"/>
- <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/uberon/ext.owl/UBERON_4300215"/>
+ <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_4300215"/>
<obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Postcranial axial cartilage located dorsal to vertebrae 3 and 4.</obo:IAO_0000115>
<core1:provenance_notes rdf:datatype="http://www.w3.org/2001/XMLSchema#string">This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon</core1:provenance_notes>
<oboInOwl:created_by rdf:datatype="http://www.w3.org/2001/XMLSchema#string">teleost_anatomy_curators</oboInOwl:created_by>
@@ -722629,7 +722846,7 @@
<owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_2001888">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_2000442"/>
- <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/uberon/ext.owl/UBERON_4300213"/>
+ <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_4300213"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0002202"/>
@@ -722655,7 +722872,7 @@
<owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_2001889">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_4300036"/>
- <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/uberon/ext.owl/UBERON_4300213"/>
+ <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_4300213"/>
<obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Postcranial axial cartilage located dorsal to vertebra 1.</obo:IAO_0000115>
<core1:provenance_notes rdf:datatype="http://www.w3.org/2001/XMLSchema#string">This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon</core1:provenance_notes>
<oboInOwl:created_by rdf:datatype="http://www.w3.org/2001/XMLSchema#string">teleost_anatomy_curators</oboInOwl:created_by>
@@ -725669,7 +725886,7 @@
<owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_2002007">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_2000442"/>
- <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/uberon/ext.owl/UBERON_4300216"/>
+ <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_4300216"/>
<obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Supraneural dorsal to neural spine 4.</obo:IAO_0000115>
<core1:provenance_notes rdf:datatype="http://www.w3.org/2001/XMLSchema#string">This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon</core1:provenance_notes>
<oboInOwl:created_by rdf:datatype="http://www.w3.org/2001/XMLSchema#string">teleost_anatomy_curators</oboInOwl:created_by>
@@ -766620,6 +766837,26 @@
+ <!-- http://purl.obolibrary.org/obo/UBERON_4300159 -->
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_4300159">
+ <oboInOwl:created_by rdf:datatype="http://www.w3.org/2001/XMLSchema#string">WD</oboInOwl:created_by>
+ <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">obsolete larval pelvic fin</rdfs:label>
+ <owl:deprecated rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</owl:deprecated>
+ </owl:Class>
+
+
+
+ <!-- http://purl.obolibrary.org/obo/UBERON_4300160 -->
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_4300160">
+ <oboInOwl:created_by rdf:datatype="http://www.w3.org/2001/XMLSchema#string">WD</oboInOwl:created_by>
+ <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">obsolete larval pectoral fin</rdfs:label>
+ <owl:deprecated rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</owl:deprecated>
+ </owl:Class>
+
+
+
<!-- http://purl.obolibrary.org/obo/UBERON_4300172 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_4300172">
@@ -766643,6 +766880,1012 @@
+ <!-- http://purl.obolibrary.org/obo/UBERON_4300174 -->
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_4300174">
+ <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0009854"/>
+ <obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A finger-like out-pocketing of the intestine where it meets the end of the stomach (pylorus). Also spelled cecum (ceca). Serves to aid digestion.</obo:IAO_0000115>
+ <oboInOwl:created_by rdf:datatype="http://www.w3.org/2001/XMLSchema#string">WD</oboInOwl:created_by>
+ <oboInOwl:editor_note rdf:datatype="http://www.w3.org/2001/XMLSchema#string">See https://github.com/obophenotype/uberon/issues/368</oboInOwl:editor_note>
+ <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">TAO:0002253</oboInOwl:hasDbXref>
+ <oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">pyloric appendage</oboInOwl:hasExactSynonym>
+ <oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">pyloric caeca</oboInOwl:hasExactSynonym>
+ <oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">pyloric caecum</oboInOwl:hasExactSynonym>
+ <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">actinopterygian pyloric caecum</rdfs:label>
+ </owl:Class>
+ <owl:Axiom>
+ <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/UBERON_4300174"/>
+ <owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
+ <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A finger-like out-pocketing of the intestine where it meets the end of the stomach (pylorus). Also spelled cecum (ceca). Serves to aid digestion.</owl:annotatedTarget>
+ <oboInOwl:hasDbXref rdf:resource="http://www.briancoad.com/dictionary/complete%20dictionary.htm"/>
+ </owl:Axiom>
+ <owl:Axiom>
+ <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/UBERON_4300174"/>
+ <owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"/>
+ <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">pyloric appendage</owl:annotatedTarget>
+ <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">TAO:0002253</oboInOwl:hasDbXref>
+ </owl:Axiom>
+ <owl:Axiom>
+ <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/UBERON_4300174"/>
+ <owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"/>
+ <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">pyloric caeca</owl:annotatedTarget>
+ <oboInOwl:hasSynonymType rdf:resource="http://purl.obolibrary.org/obo/uberon/core#PLURAL"/>
+ </owl:Axiom>
+
+
+
+ <!-- http://purl.obolibrary.org/obo/UBERON_4300175 -->
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_4300175">
+ <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_2002261"/>
+ <obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Fin spine that precedes the dorsal fin, oriented anteriorly towards the head of the fish.</obo:IAO_0000115>
+ <oboInOwl:created_by rdf:resource="http://orcid.org/0000-0003-3162-7490"/>
+ <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">procumbent dorsal fin spine</rdfs:label>
+ </owl:Class>
+
+
+
+ <!-- http://purl.obolibrary.org/obo/UBERON_4300176 -->
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_4300176">
+ <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_2001612"/>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
+ <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_2001873"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Branch of supraorbital sensory canal that extends to the parietal.</obo:IAO_0000115>
+ <oboInOwl:created_by rdf:resource="http://orcid.org/0000-0003-3162-7490"/>
+ <rdfs:label xml:lang="en">parietal branch of the supraorbital canal</rdfs:label>
+ </owl:Class>
+
+
+
+ <!-- http://purl.obolibrary.org/obo/UBERON_4300177 -->
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_4300177">
+ <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0009678"/>
+ <obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Tooth row consisting of replacement teeth.</obo:IAO_0000115>
+ <oboInOwl:created_by rdf:resource="http://orcid.org/0000-0003-3162-7490"/>
+ <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">replacement tooth row</rdfs:label>
+ </owl:Class>
+
+
+
+ <!-- http://purl.obolibrary.org/obo/UBERON_4300178 -->
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_4300178">
+ <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_2001952"/>
+ <oboInOwl:created_by rdf:resource="http://orcid.org/0000-0003-3162-7490"/>
+ <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">inner tooth row of dentary</rdfs:label>
+ </owl:Class>
+
+
+
+ <!-- http://purl.obolibrary.org/obo/UBERON_4300179 -->
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_4300179">
+ <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_2001833"/>
+ <oboInOwl:created_by rdf:resource="http://orcid.org/0000-0003-3162-7490"/>
+ <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">inner tooth row of premaxilla</rdfs:label>
+ </owl:Class>
+
+
+
+ <!-- http://purl.obolibrary.org/obo/UBERON_4300180 -->
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_4300180">
+ <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0034929"/>
+ <obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">The fleshy throat region of a fish which extends forward from the ventral part of the chest and narrows anteriorly, and externally separating the two gill chambers; that narrowed portion of the breast which lies between the gill chambers and separates them.</obo:IAO_0000115>
+ <oboInOwl:created_by rdf:resource="http://orcid.org/0000-0003-3162-7490"/>
+ <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">isthmus</rdfs:label>
+ </owl:Class>
+ <owl:Axiom>
+ <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/UBERON_4300180"/>
+ <owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
+ <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">The fleshy throat region of a fish which extends forward from the ventral part of the chest and narrows anteriorly, and externally separating the two gill chambers; that narrowed portion of the breast which lies between the gill chambers and separates them.</owl:annotatedTarget>
+ <rdfs:comment rdf:resource="http://www.fishbase.org/glossary/Glossary.php?q=isthmus"/>
+ </owl:Axiom>
+
+
+
+ <!-- http://purl.obolibrary.org/obo/UBERON_4300181 -->
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_4300181">
+ <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0010289"/>
+ <obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Sclerotic cartilage that is located posterior to the eye.</obo:IAO_0000115>
+ <oboInOwl:created_by rdf:resource="http://orcid.org/0000-0003-3162-7490"/>
+ <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">posterior sclerotic cartilage</rdfs:label>
+ </owl:Class>
+
+
+
+ <!-- http://purl.obolibrary.org/obo/UBERON_4300182 -->
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_4300182">
+ <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0010289"/>
+ <obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Sclerotic cartilage that is located anterior to the eye.</obo:IAO_0000115>
+ <oboInOwl:created_by rdf:resource="http://orcid.org/0000-0003-3162-7490"/>
+ <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">anterior sclerotic cartilage</rdfs:label>
+ </owl:Class>
+
+
+
+ <!-- http://purl.obolibrary.org/obo/UBERON_4300184 -->
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_4300184">
+ <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0001076"/>
+ <obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Neural spine that is associated with the fifth vertebra.</obo:IAO_0000115>
+ <oboInOwl:created_by rdf:datatype="http://www.w3.org/2001/XMLSchema#string">WD</oboInOwl:created_by>
+ <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">neural spine 5</rdfs:label>
+ </owl:Class>
+
+
+
+ <!-- http://purl.obolibrary.org/obo/UBERON_4300185 -->
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_4300185">
+ <rdfs:subClassOf rdf:resource="htt...
[truncated message content] |
|
From: <cmu...@us...> - 2018-08-02 19:40:20
|
Revision: 5412
http://sourceforge.net/p/obo/svn/5412
Author: cmungall
Date: 2018-08-02 19:40:18 +0000 (Thu, 02 Aug 2018)
Log Message:
-----------
new-release
Added Paths:
-----------
uberon/releases/2018-07-30/
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <cmu...@us...> - 2018-08-02 19:38:43
|
Revision: 5411
http://sourceforge.net/p/obo/svn/5411
Author: cmungall
Date: 2018-08-02 19:38:09 +0000 (Thu, 02 Aug 2018)
Log Message:
-----------
new release
Modified Paths:
--------------
uberon/trunk/basic.obo
uberon/trunk/basic.owl
uberon/trunk/bridge/uberon-bridge-to-aao.obo
uberon/trunk/bridge/uberon-bridge-to-aao.owl
uberon/trunk/bridge/uberon-bridge-to-aeo.obo
uberon/trunk/bridge/uberon-bridge-to-aeo.owl
uberon/trunk/bridge/uberon-bridge-to-bila.obo
uberon/trunk/bridge/uberon-bridge-to-bila.owl
uberon/trunk/bridge/uberon-bridge-to-caro.obo
uberon/trunk/bridge/uberon-bridge-to-caro.owl
uberon/trunk/bridge/uberon-bridge-to-dhba.obo
uberon/trunk/bridge/uberon-bridge-to-dhba.owl
uberon/trunk/bridge/uberon-bridge-to-dmba.obo
uberon/trunk/bridge/uberon-bridge-to-dmba.owl
uberon/trunk/bridge/uberon-bridge-to-efo.obo
uberon/trunk/bridge/uberon-bridge-to-efo.owl
uberon/trunk/bridge/uberon-bridge-to-ehdaa.obo
uberon/trunk/bridge/uberon-bridge-to-ehdaa.owl
uberon/trunk/bridge/uberon-bridge-to-ehdaa2.obo
uberon/trunk/bridge/uberon-bridge-to-ehdaa2.owl
uberon/trunk/bridge/uberon-bridge-to-emapa.obo
uberon/trunk/bridge/uberon-bridge-to-emapa.owl
uberon/trunk/bridge/uberon-bridge-to-fbbt.obo
uberon/trunk/bridge/uberon-bridge-to-fbbt.owl
uberon/trunk/bridge/uberon-bridge-to-fbdv.obo
uberon/trunk/bridge/uberon-bridge-to-fbdv.owl
uberon/trunk/bridge/uberon-bridge-to-fma.obo
uberon/trunk/bridge/uberon-bridge-to-fma.owl
uberon/trunk/bridge/uberon-bridge-to-go.obo
uberon/trunk/bridge/uberon-bridge-to-go.owl
uberon/trunk/bridge/uberon-bridge-to-hao.obo
uberon/trunk/bridge/uberon-bridge-to-hao.owl
uberon/trunk/bridge/uberon-bridge-to-hba.obo
uberon/trunk/bridge/uberon-bridge-to-hba.owl
uberon/trunk/bridge/uberon-bridge-to-ma.obo
uberon/trunk/bridge/uberon-bridge-to-ma.owl
uberon/trunk/bridge/uberon-bridge-to-mba.obo
uberon/trunk/bridge/uberon-bridge-to-mba.owl
uberon/trunk/bridge/uberon-bridge-to-mfo.obo
uberon/trunk/bridge/uberon-bridge-to-mfo.owl
uberon/trunk/bridge/uberon-bridge-to-nifstd.owl
uberon/trunk/bridge/uberon-bridge-to-og.obo
uberon/trunk/bridge/uberon-bridge-to-og.owl
uberon/trunk/bridge/uberon-bridge-to-pba.obo
uberon/trunk/bridge/uberon-bridge-to-pba.owl
uberon/trunk/bridge/uberon-bridge-to-sctid.obo
uberon/trunk/bridge/uberon-bridge-to-sctid.owl
uberon/trunk/bridge/uberon-bridge-to-spd.obo
uberon/trunk/bridge/uberon-bridge-to-spd.owl
uberon/trunk/bridge/uberon-bridge-to-tads.obo
uberon/trunk/bridge/uberon-bridge-to-tads.owl
uberon/trunk/bridge/uberon-bridge-to-tao.obo
uberon/trunk/bridge/uberon-bridge-to-tao.owl
uberon/trunk/bridge/uberon-bridge-to-tgma.obo
uberon/trunk/bridge/uberon-bridge-to-tgma.owl
uberon/trunk/bridge/uberon-bridge-to-vhog.owl
uberon/trunk/bridge/uberon-bridge-to-vsao.obo
uberon/trunk/bridge/uberon-bridge-to-vsao.owl
uberon/trunk/bridge/uberon-bridge-to-wbbt.obo
uberon/trunk/bridge/uberon-bridge-to-wbbt.owl
uberon/trunk/bridge/uberon-bridge-to-wbls.obo
uberon/trunk/bridge/uberon-bridge-to-wbls.owl
uberon/trunk/bridge/uberon-bridge-to-xao.obo
uberon/trunk/bridge/uberon-bridge-to-xao.owl
uberon/trunk/bridge/uberon-bridge-to-zfa.obo
uberon/trunk/bridge/uberon-bridge-to-zfa.owl
uberon/trunk/bridge/uberon-bridge-to-zfs.obo
uberon/trunk/bridge/uberon-bridge-to-zfs.owl
uberon/trunk/chebi_import.owl
uberon/trunk/cl_import.owl
uberon/trunk/composite-metazoan-basic.obo
uberon/trunk/composite-metazoan.obo
uberon/trunk/composite-metazoan.owl
uberon/trunk/composite-vertebrate.obo
uberon/trunk/composite-vertebrate.owl
uberon/trunk/core.obo
uberon/trunk/core.owl
uberon/trunk/depictions.owl
uberon/trunk/diffs/uberon-diff.md
uberon/trunk/ext.obo
uberon/trunk/ext.owl
uberon/trunk/go_import.owl
uberon/trunk/merged.obo
uberon/trunk/merged.owl
uberon/trunk/ncbitaxon_import.owl
uberon/trunk/pato_import.owl
uberon/trunk/pr_import.owl
uberon/trunk/reports/stages-human-report.tsv
uberon/trunk/reports/stages-metazoan-report.tsv
uberon/trunk/reports/stages-mouse-report.tsv
uberon/trunk/reports/stages-xenopus-report.tsv
uberon/trunk/ro_import.owl
uberon/trunk/subsets/amniote-basic.obo
uberon/trunk/subsets/amniote-basic.owl
uberon/trunk/subsets/appendicular-minimal.obo
uberon/trunk/subsets/circulatory-minimal.obo
uberon/trunk/subsets/cranial-minimal.obo
uberon/trunk/subsets/cumbo.obo
uberon/trunk/subsets/cumbo.owl
uberon/trunk/subsets/digestive-minimal.obo
uberon/trunk/subsets/efo-slim.obo
uberon/trunk/subsets/efo-slim.owl
uberon/trunk/subsets/euarchontoglires-basic.obo
uberon/trunk/subsets/euarchontoglires-basic.owl
uberon/trunk/subsets/excretory-minimal.obo
uberon/trunk/subsets/immune-minimal.obo
uberon/trunk/subsets/life-stages-composite.obo
uberon/trunk/subsets/life-stages-core.owl
uberon/trunk/subsets/mouse-view.owl
uberon/trunk/subsets/musculoskeletal-minimal.obo
uberon/trunk/subsets/nervous-minimal.obo
uberon/trunk/subsets/pulmonary-minimal.obo
uberon/trunk/subsets/reproductive-minimal.obo
uberon/trunk/subsets/sensory-minimal.obo
uberon/trunk/subsets/uberon-with-isa-for-FMA-MA-ZFA.obo
uberon/trunk/uberon.obo
uberon/trunk/uberon.owl
Added Paths:
-----------
uberon/trunk/uberon-base.owl
Modified: uberon/trunk/basic.obo
===================================================================
--- uberon/trunk/basic.obo 2018-07-28 03:31:11 UTC (rev 5410)
+++ uberon/trunk/basic.obo 2018-08-02 19:38:09 UTC (rev 5411)
@@ -1,6 +1,6 @@
format-version: 1.2
-data-version: uberon/releases/2018-07-27/basic.owl
-date: 27:07:2018 15:55
+data-version: uberon/releases/2018-07-30/basic.owl
+date: 30:07:2018 19:18
saved-by: cjm
subsetdef: cumbo "CUMBO"
subsetdef: cyclostome_subset "cyclostome structures"
@@ -46,7 +46,7 @@
default-namespace: uberon
remark: Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/TEMP>) VersionIRI(<null>))) [Axioms: 437 Logical Axioms: 0]
remark: Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/uberon-bridge-to-bfo.owl>) VersionIRI(<null>))) [Axioms: 20 Logical Axioms: 9]
-remark: Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/uberon/ext.owl>) VersionIRI(<null>))) [Axioms: 26297 Logical Axioms: 4860]
+remark: Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/uberon/ext.owl>) VersionIRI(<null>))) [Axioms: 26298 Logical Axioms: 4860]
remark: Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/uberon/insect-anatomy.owl>) VersionIRI(<null>))) [Axioms: 2098 Logical Axioms: 650]
remark: Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/uberon/reflexivity_axioms.owl>) VersionIRI(<null>))) [Axioms: 2 Logical Axioms: 2]
treat-xrefs-as-equivalent: AEO
@@ -277,7 +277,7 @@
xref: FMA:13889
xref: GAID:457
xref: HBA:4634
-xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=399 {source="NIFSTD:birnlex_1353"}
+xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=399
xref: http://linkedlifedata.com/resource/umls/id/C0032005
xref: http://www.snomedbrowser.com/Codes/Details/181125003
xref: MA:0000176
@@ -288,7 +288,7 @@
xref: OpenCyc:Mx4rv6NQYJwpEbGdrcN5Y29ycA
xref: Pituitary:gland
xref: TAO:0000118
-xref: UMLS:C0032005 {source="NIFSTD:birnlex_1353"}
+xref: UMLS:C0032005 {source="ncithesaurus:Pituitary_Gland"}
xref: VHOG:0000143
xref: XAO:0000017
xref: ZFA:0000118
@@ -618,7 +618,7 @@
xref: NCIT:C12401
xref: OpenCyc:Mx8Ngx4rwKSh9pwpEbGdrcN5Y29ycB4rvVil5pwpEbGdrcN5Y29ycB4rvViTvpwpEbGdrcN5Y29ycA
xref: TAO:0000107
-xref: UMLS:C0015392 {source="ncithesaurus:Eye"}
+xref: UMLS:C0015392 {source="NIFSTD:birnlex_1169"}
xref: UMLS:C1280202 {source="NIFSTD:birnlex_1169"}
xref: VHOG:0000275
xref: XAO:0000179
@@ -904,8 +904,8 @@
def: "An ovarian follicle that has one layer of granulosa cells." [GO:0001545, GOC:mtg_mpo, http://ovary.stanford.edu]
subset: pheno_slim
synonym: "folliculus ovaricus primarius" EXACT LATIN [FMA:18634]
+synonym: "ovary primary follicle" EXACT [EMAPA:35631]
synonym: "ovary primary follicle" EXACT [MA:0002907]
-synonym: "ovary primary follicle" EXACT [EMAPA:35631]
synonym: "preantral follicle of ovary" RELATED []
synonym: "primary egg follicle" RELATED []
synonym: "primary follicle" RELATED [EMAPA:35631]
@@ -1100,8 +1100,8 @@
synonym: "dorsal root ganglion" EXACT [BTO:0001264]
synonym: "DRG" RELATED ABBREVIATION []
synonym: "ganglion of dorsal root" EXACT [OBOL:automatic]
+synonym: "ganglion sensorium nervi spinalis" RELATED LATIN [http://en.wikipedia.org/wiki/Dorsal_root_ganglion]
synonym: "ganglion sensorium nervi spinalis" RELATED [BTO:0001264]
-synonym: "ganglion sensorium nervi spinalis" RELATED LATIN [http://en.wikipedia.org/wiki/Dorsal_root_ganglion]
synonym: "ganglion spinale" RELATED [BTO:0001264]
synonym: "ganglion spinalis" EXACT [FMA:5888]
synonym: "posterior root ganglion" RELATED [EMAPA:16668]
@@ -2927,8 +2927,8 @@
synonym: "ovary theca externa" EXACT [MA:0001713]
synonym: "theca externa (folliculus ovaricus tertiarius)" EXACT [FMA:18657]
synonym: "tunica externa of theca folliculi" EXACT [FMA:18657]
+synonym: "tunica externa thecae folliculi" RELATED [BTO:0002852]
synonym: "tunica externa thecae folliculi" RELATED LATIN [http://en.wikipedia.org/wiki/Theca_externa]
-synonym: "tunica externa thecae folliculi" RELATED [BTO:0002852]
xref: BTO:0002852
xref: FMA:18657
xref: http://www.snomedbrowser.com/Codes/Details/258767003
@@ -3074,7 +3074,6 @@
xref: VHOG:0001186
xref: XAO:0000244
xref: ZFA:0005781
-is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0013522 ! subdivision of tube
relationship: part_of UBERON:0001555 {source="ZFA"} ! digestive tract
relationship: part_of UBERON:0004122 {source="AAO"} ! genitourinary system
@@ -4150,8 +4149,8 @@
name: ileal mucosa
def: "A mucosa that is part of a ileum [Automatically generated definition]." [OBOL:automatic]
synonym: "ileal mucous membrane" EXACT [FMA:14956]
+synonym: "ileum mucosa" EXACT [OBOL:automatic]
synonym: "ileum mucosa" EXACT [FMA:14956]
-synonym: "ileum mucosa" EXACT [OBOL:automatic]
synonym: "ileum mucosa of organ" EXACT [OBOL:automatic]
synonym: "ileum mucous membrane" EXACT [OBOL:automatic]
synonym: "ileum organ mucosa" EXACT [OBOL:automatic]
@@ -4261,8 +4260,8 @@
synonym: "mucous membrane" EXACT [FMA:85355]
synonym: "organ mucosa" EXACT [FMA:85355]
synonym: "region of mucosa" RELATED [FMA:85358]
+synonym: "tunica mucosa" RELATED LATIN [http://en.wikipedia.org/wiki/Mucous_membrane]
synonym: "tunica mucosa" RELATED [BTO:0000886]
-synonym: "tunica mucosa" RELATED LATIN [http://en.wikipedia.org/wiki/Mucous_membrane]
xref: AEO:0000199
xref: BTO:0000886
xref: CALOHA:TS-2031
@@ -4451,8 +4450,8 @@
def: "A mucosa that is part of a pharynx [Automatically generated definition]." [OBOL:automatic]
synonym: "mucosa of organ of pharynx" EXACT [OBOL:automatic]
synonym: "mucosa of pharynx" EXACT [OBOL:automatic]
+synonym: "mucous membrane of pharynx" EXACT [FMA:55031]
synonym: "mucous membrane of pharynx" EXACT [OBOL:automatic]
-synonym: "mucous membrane of pharynx" EXACT [FMA:55031]
synonym: "mucous membrane of the pharynx" RELATED [BTO:0001047]
synonym: "organ mucosa of pharynx" EXACT [OBOL:automatic]
synonym: "pharynx mucosa" EXACT [OBOL:automatic]
@@ -5149,8 +5148,8 @@
def: "The longissimus is the muscle lateral to the semispinalis. It is the longest subdivision of the sacrospinalis that extends forward into the transverse processes of the posterior cervical vertebrae. [WP,unvetted]." [http://en.wikipedia.org/wiki/Longissimus]
synonym: "intermediate column of erector spinae" RELATED []
synonym: "longissimus" EXACT [FMA:77178]
+synonym: "musculus longissimus" EXACT [BTO:0001648]
synonym: "musculus longissimus" EXACT LATIN [http://en.wikipedia.org/wiki/Longissimus]
-synonym: "musculus longissimus" EXACT [BTO:0001648]
xref: BTO:0001648
xref: EMAPA:37648 {source="MA:th"}
xref: FMA:77178
@@ -5224,8 +5223,8 @@
def: "An epithelium that is part of a colon [Automatically generated definition]." [OBOL:automatic]
subset: vertebrate_core
synonym: "colon epithelial tissue" EXACT [OBOL:automatic]
+synonym: "colon epithelium" EXACT [OBOL:automatic]
synonym: "colon epithelium" EXACT [FMA:17302]
-synonym: "colon epithelium" EXACT [OBOL:automatic]
synonym: "epithelial tissue of colon" EXACT [OBOL:automatic]
synonym: "epithelial tissue of large bowel" EXACT [OBOL:automatic]
synonym: "epithelium of colon" EXACT [OBOL:automatic]
@@ -5326,8 +5325,8 @@
def: "The nasal vestibule is the most anterior part of the nasal cavity. It's enclosed by the cartilages of nose and lined by the same epithelium of the skin. The other part of the nasal cavity, which is lined by the respiratory epithelium, is called nasal cavity proper. [WP,unvetted]." [http://en.wikipedia.org/wiki/Nasal_vestibule]
synonym: "vestibular part of nasal cavity" EXACT [FMA:59644]
synonym: "vestibulum nasale" RELATED [BTO:0001761]
+synonym: "vestibulum nasi" RELATED LATIN [http://en.wikipedia.org/wiki/Nasal_vestibule]
synonym: "vestibulum nasi" RELATED [BTO:0001761]
-synonym: "vestibulum nasi" RELATED LATIN [http://en.wikipedia.org/wiki/Nasal_vestibule]
xref: BTO:0001761
xref: CALOHA:TS-0660
xref: FMA:59644
@@ -5426,8 +5425,8 @@
synonym: "mucosa of organ of bronchus" EXACT [OBOL:automatic]
synonym: "mucous membrane of bronchi" EXACT [OBOL:automatic]
synonym: "mucous membrane of bronchial trunk" EXACT [OBOL:automatic]
+synonym: "mucous membrane of bronchus" EXACT [FMA:62652]
synonym: "mucous membrane of bronchus" EXACT [OBOL:automatic]
-synonym: "mucous membrane of bronchus" EXACT [FMA:62652]
synonym: "organ mucosa of bronchi" EXACT [OBOL:automatic]
synonym: "organ mucosa of bronchial trunk" EXACT [OBOL:automatic]
synonym: "organ mucosa of bronchus" EXACT [OBOL:automatic]
@@ -5532,10 +5531,10 @@
id: UBERON:0000416
name: subdural space
def: "A narrow fluid-containing space, often only a potential space, between the dura mater and the arachnoid." [BTO:0002082, http://en.wikipedia.org/wiki/Subdural_space, http://www.ncbi.nlm.nih.gov/pubmed/8421539]
+synonym: "cavum subdurale" RELATED [BTO:0002082]
synonym: "cavum subdurale" RELATED LATIN [http://en.wikipedia.org/wiki/Subdural_space]
-synonym: "cavum subdurale" RELATED [BTO:0002082]
+synonym: "spatium subdurale" RELATED [BTO:0002082]
synonym: "spatium subdurale" RELATED LATIN [http://en.wikipedia.org/wiki/Subdural_space]
-synonym: "spatium subdurale" RELATED [BTO:0002082]
synonym: "subdural cavity" RELATED [BTO:0002082]
synonym: "subdural cleavage" RELATED [BTO:0002082]
synonym: "subdural cleft" RELATED [BTO:0002082]
@@ -7451,8 +7450,8 @@
synonym: "pharyngeal branch of inferior vagal ganglion" EXACT [FMA:6234]
synonym: "pharyngeal branch of vagus" EXACT [FMA:6234]
synonym: "ramus pharyngealis nervi vagalis" EXACT [FMA:6234]
+synonym: "ramus pharyngeus" EXACT LATIN [FMA:6234, FMA:TA]
synonym: "ramus pharyngeus" EXACT [FMA:TA]
-synonym: "ramus pharyngeus" EXACT LATIN [FMA:6234, FMA:TA]
synonym: "ramus pharyngeus nervi vagi" RELATED LATIN [http://en.wikipedia.org/wiki/Pharyngeal_part_of_vagus_nerve]
synonym: "tenth cranial nerve pharyngeal branch" EXACT [FMA:6234]
synonym: "vagal pharyngeal branch" EXACT [FMA:6234]
@@ -7656,7 +7655,7 @@
xref: EMAPA:35695
xref: FMA:62072
xref: HBA:9229
-xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=484
+xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=484 {source="NIFSTD:birnlex_1026"}
xref: http://linkedlifedata.com/resource/umls/id/C0152327
xref: MA:0002743
xref: MBA:158
@@ -7736,7 +7735,7 @@
xref: OpenCyc:Mx4rvVjLm5wpEbGdrcN5Y29ycA
xref: Optic:nerve
xref: TAO:0000435
-xref: UMLS:C0029130 {source="ncithesaurus:Optic_Nerve"}
+xref: UMLS:C0029130 {source="NIFSTD:birnlex_1640"}
xref: VHOG:0000543
xref: XAO:0000188
xref: ZFA:0000435
@@ -8104,7 +8103,7 @@
xref: OpenCyc:Mx4rvVjT65wpEbGdrcN5Y29ycA
xref: PBA:3999
xref: TAO:0000008
-xref: UMLS:C0006104 {source="NIFSTD:birnlex_796"}
+xref: UMLS:C0006104 {source="ncithesaurus:Brain"}
xref: UMLS:C1269537 {source="NIFSTD:birnlex_796"}
xref: VHOG:0000157
xref: XAO:0000010
@@ -8159,7 +8158,7 @@
xref: MIAA:0000108
xref: NCIT:C12443
xref: PBA:128011354
-xref: UMLS:C0007776 {source="NIFSTD:birnlex_1494"}
+xref: UMLS:C0007776 {source="ncithesaurus:Cortex"}
xref: VHOG:0000722
is_a: UBERON:0011215 ! central nervous system cell part cluster
is_a: UBERON:0016548 {source="FMA"} ! central nervous system gray matter layer
@@ -8216,7 +8215,7 @@
xref: FMA:62045
xref: GAID:832
xref: HBA:9310
-xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=459
+xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=459 {source="NIFSTD:birnlex_1416"}
xref: http://linkedlifedata.com/resource/umls/id/C0029126
xref: http://www.snomedbrowser.com/Codes/Details/244453006
xref: MA:0001098
@@ -8427,7 +8426,7 @@
xref: NIFSTD_RETIRED:birnlex_1156
xref: OpenCyc:Mx4rvViTfpwpEbGdrcN5Y29ycA
xref: TAO:0000152
-xref: UMLS:C0035298 {source="NIFSTD:birnlex_1153"}
+xref: UMLS:C0035298 {source="ncithesaurus:Retina"}
xref: UMLS:C1278894 {source="NIFSTD:birnlex_1153"}
xref: VHOG:0000229
xref: XAO:0000009
@@ -8936,7 +8935,7 @@
xref: FMA:67943
xref: GAID:578
xref: HBA:9131
-xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=547
+xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=547 {source="NIFSTD:birnlex_733"}
xref: http://en.wikipedia.org/wiki/Pons
xref: http://linkedlifedata.com/resource/umls/id/C0032639
xref: http://linkedlifedata.com/resource/umls/id/C1280999
@@ -8947,7 +8946,7 @@
xref: MESH:D011149
xref: MIAA:0000115
xref: NCIT:C12511
-xref: UMLS:C0032639 {source="NIFSTD:birnlex_733"}
+xref: UMLS:C0032639 {source="ncithesaurus:Pons_Varolii"}
xref: UMLS:C1280999 {source="NIFSTD:birnlex_733"}
xref: VHOG:0001176
is_a: UBERON:0002616 ! regional part of brain
@@ -9339,8 +9338,8 @@
synonym: "gonecyst" RELATED []
synonym: "seminal gland" BROAD []
synonym: "vas efferens" RELATED []
+synonym: "vesicula seminalis" RELATED [BTO:0001234]
synonym: "vesicula seminalis" RELATED [http://en.wikipedia.org/wiki/Seminal_vesicle]
-synonym: "vesicula seminalis" RELATED [BTO:0001234]
synonym: "vesiculae seminales" RELATED LATIN [http://en.wikipedia.org/wiki/Seminal_vesicle]
synonym: "vesiculae seminales" RELATED [http://en.wikipedia.org/wiki/Seminal_vesicle]
synonym: "vesicular gland" RELATED [http://en.wikipedia.org/wiki/Seminal_vesicle]
@@ -13555,8 +13554,8 @@
synonym: "antrum of stomach" EXACT []
synonym: "antrum of Willis" RELATED [BTO:0001732]
synonym: "antrum pylori" RELATED [BTO:0001732]
+synonym: "antrum pyloricum" RELATED LATIN [http://en.wikipedia.org/wiki/Pyloric_antrum]
synonym: "antrum pyloricum" RELATED [BTO:0001732]
-synonym: "antrum pyloricum" RELATED LATIN [http://en.wikipedia.org/wiki/Pyloric_antrum]
synonym: "gastric antrum" RELATED [BTO:0001732]
synonym: "stomach antrum" RELATED []
synonym: "stomach pyloric antrum" EXACT []
@@ -13851,8 +13850,8 @@
def: "Anatomical cavity bounded by visceral and parietal peritoneum" [http://en.wikipedia.org/wiki/Peritoneal_cavity, http://orcid.org/0000-0002-6601-2165, https://github.com/obophenotype/uberon/issues/86]
subset: pheno_slim
subset: uberon_slim
+synonym: "cavitas peritonealis" RELATED LATIN [http://en.wikipedia.org/wiki/Peritoneal_cavity]
synonym: "cavitas peritonealis" RELATED [BTO:0001782]
-synonym: "cavitas peritonealis" RELATED LATIN [http://en.wikipedia.org/wiki/Peritoneal_cavity]
synonym: "saccus serosus peritonei" RELATED LATIN [http://en.wikipedia.org/wiki/Peritoneal_cavity]
xref: BTO:0001782
xref: EHDAA2:0001446
@@ -13876,8 +13875,8 @@
name: superior recess of lesser sac
alt_id: UBERON:0006299
synonym: "omental bursa superior recess" EXACT [MA:0000447]
+synonym: "recessus superior bursae omentalis" EXACT LATIN [FMA:TA]
synonym: "recessus superior bursae omentalis" EXACT LATIN [FMA:14708, FMA:TA]
-synonym: "recessus superior bursae omentalis" EXACT LATIN [FMA:TA]
synonym: "recessus superior omentalis" EXACT [FMA:14708]
synonym: "superior omental bursa" EXACT [FMA:14708]
synonym: "superior recess" EXACT [EHDAA2:0001958]
@@ -13900,8 +13899,8 @@
synonym: "inferior recess" EXACT [EHDAA2:0000825]
synonym: "inferior recess of omental bursa" EXACT [FMA:14709]
synonym: "omental bursa inferior recess" EXACT [MA:0000446]
+synonym: "recessus inferior bursae omentalis" EXACT LATIN [FMA:TA]
synonym: "recessus inferior bursae omentalis" EXACT LATIN [FMA:14709, FMA:TA]
-synonym: "recessus inferior bursae omentalis" EXACT LATIN [FMA:TA]
synonym: "recessus inferior omentalis" EXACT [FMA:14709]
xref: EHDAA:6083
xref: EHDAA2:0000825
@@ -16567,8 +16566,8 @@
synonym: "capsular space" EXACT [http://medical-dictionary.thefreedictionary.com/bowman's+space]
synonym: "glomerular capsule space" EXACT [MP:0011499]
synonym: "glomerular urinary space" EXACT [MP:0011499]
+synonym: "inter-glomerular space" EXACT [ZFA:0005283]
synonym: "inter-glomerular space" EXACT [ZFA:0005312]
-synonym: "inter-glomerular space" EXACT [ZFA:0005283]
synonym: "pronephric capsular space" EXACT [ZFA:0005312]
synonym: "renal capsular space" EXACT [ZFA:0005283]
synonym: "urinary space" EXACT []
@@ -17691,8 +17690,8 @@
subset: pheno_slim
subset: uberon_slim
synonym: "male prostatic urethra" EXACT [MP:0011777]
+synonym: "pars prostatica urethrae" EXACT LATIN [http://en.wikipedia.org/wiki/Prostatic_urethra]
synonym: "pars prostatica urethrae" EXACT [MP:0011777]
-synonym: "pars prostatica urethrae" EXACT LATIN [http://en.wikipedia.org/wiki/Prostatic_urethra]
synonym: "pars prostatica urethrae" RELATED [BTO:0003163]
synonym: "prostatic part of male urethra" EXACT [MP:0011777]
synonym: "prostatic part of urethra" EXACT []
@@ -18266,7 +18265,7 @@
xref: MESH:A12.207.268
xref: NCIT:C12692
xref: TAO:0002184
-xref: UMLS:C0007806 {source="ncithesaurus:Cerebrospinal_Fluid"}
+xref: UMLS:C0007806 {source="NIFSTD:birnlex_1798"}
xref: VHOG:0001278
xref: ZFA:0001626
is_a: UBERON:0007779 {source="Wikipedia"} ! transudate
@@ -18578,8 +18577,8 @@
name: semitendinosus
def: "The semitendinosus is a muscle in the back of the thigh; it is one of the hamstrings. [WP,unvetted]." [http://en.wikipedia.org/wiki/Semitendinosus_muscle]
subset: uberon_slim
+synonym: "musculus semitendinosus" RELATED LATIN [http://en.wikipedia.org/wiki/Semitendinosus_muscle]
synonym: "musculus semitendinosus" RELATED [BTO:0001236]
-synonym: "musculus semitendinosus" RELATED LATIN [http://en.wikipedia.org/wiki/Semitendinosus_muscle]
synonym: "semitendinosus muscle" EXACT []
xref: BTO:0001236
xref: EMAPA:35762
@@ -18598,8 +18597,8 @@
name: tensor fasciae latae muscle
def: "The tensor fasciae latae or tensor fasciæ latæ is a muscle of the thigh. [WP,unvetted]." [http://en.wikipedia.org/wiki/Tensor_fasciae_latae_muscle]
subset: uberon_slim
+synonym: "musculus tensor fasciae latae" EXACT LATIN [FMA:22423, FMA:TA]
synonym: "musculus tensor fasciae latae" EXACT LATIN [http://en.wikipedia.org/wiki/Tensor_fasciae_latae_muscle]
-synonym: "musculus tensor fasciae latae" EXACT LATIN [FMA:22423, FMA:TA]
synonym: "tensor fasciae lata" EXACT [MA:0002391]
synonym: "tensor fasciae lata muscle" EXACT []
synonym: "tensor fasciae latae" EXACT [FMA:22423]
@@ -18621,8 +18620,8 @@
subset: efo_slim
subset: pheno_slim
subset: uberon_slim
+synonym: "musculus quadriceps femoris" RELATED LATIN [http://en.wikipedia.org/wiki/Quadriceps_femoris_muscle]
synonym: "musculus quadriceps femoris" RELATED [BTO:0001149]
-synonym: "musculus quadriceps femoris" RELATED LATIN [http://en.wikipedia.org/wiki/Quadriceps_femoris_muscle]
synonym: "quadricep muscle" RELATED [BTO:0001149]
synonym: "quadriceps" EXACT []
synonym: "quadriceps femoris muscle" EXACT []
@@ -19860,8 +19859,8 @@
synonym: "hamate" EXACT [MA:0001343]
synonym: "hamate bone" EXACT [FMA:23730]
synonym: "hand distal carpal bone 4" RELATED [MA:0001343]
+synonym: "os hamatum" RELATED LATIN [http://en.wikipedia.org/wiki/Hamate_bone]
synonym: "os hamatum" RELATED [VSAO:0005046]
-synonym: "os hamatum" RELATED LATIN [http://en.wikipedia.org/wiki/Hamate_bone]
synonym: "unciform" RELATED [MA:0001343]
synonym: "unciform bone" EXACT [FMA:23730]
synonym: "uncinate" RELATED [MA:0001343]
@@ -20439,8 +20438,8 @@
synonym: "medial cuneiform" EXACT [FMA:24518]
synonym: "medial cuneiform bone" EXACT [FMA:24518]
synonym: "os cuneiform primum" RELATED LATIN [http://en.wikipedia.org/wiki/Medial_cuneiform_bone]
+synonym: "os cuneiforme mediale" EXACT LATIN [NominaAnatomicaVeterinaria:2005]
synonym: "os cuneiforme mediale" EXACT LATIN [FMA:TA]
-synonym: "os cuneiforme mediale" EXACT LATIN [NominaAnatomicaVeterinaria:2005]
synonym: "os cuneiforme mediale" RELATED LATIN [http://en.wikipedia.org/wiki/Medial_cuneiform_bone]
synonym: "os cuneiforme primum" RELATED [BTO:0002360]
synonym: "os tarsale I" EXACT LATIN [NominaAnatomicaVeterinaria:2005]
@@ -20482,8 +20481,8 @@
synonym: "middle cuneiform" EXACT []
synonym: "middle cuneiform bone of foot" EXACT []
synonym: "os cuneiforme intermedium" EXACT LATIN [NominaAnatomicaVeterinaria:2005]
+synonym: "os cuneiforme intermedium" RELATED LATIN [http://en.wikipedia.org/wiki/Intermediate_cuneiform_bone]
synonym: "os cuneiforme intermedium" RELATED [BTO:0002359]
-synonym: "os cuneiforme intermedium" RELATED LATIN [http://en.wikipedia.org/wiki/Intermediate_cuneiform_bone]
synonym: "os cuneiforme secundum" RELATED [BTO:0002359]
synonym: "os cuneiforme secundum" RELATED LATIN [http://en.wikipedia.org/wiki/Intermediate_cuneiform_bone]
synonym: "os tarsale II" EXACT LATIN [NominaAnatomicaVeterinaria:2005]
@@ -21495,8 +21494,8 @@
synonym: "auxillery nerve" RELATED [http://en.wikipedia.org/wiki/Axillary_nerve]
synonym: "circumflex humeral nerve" EXACT []
synonym: "circumflex nerve" RELATED [http://en.wikipedia.org/wiki/Axillary_nerve]
+synonym: "nervus axillaris" RELATED LATIN [http://en.wikipedia.org/wiki/Axillary_nerve]
synonym: "nervus axillaris" RELATED [http://en.wikipedia.org/wiki/Axillary_nerve]
-synonym: "nervus axillaris" RELATED LATIN [http://en.wikipedia.org/wiki/Axillary_nerve]
xref: Axillary:nerve
xref: EMAPA:18802
xref: FMA:37072
@@ -22009,8 +22008,8 @@
synonym: "aorta abdominalis" RELATED LATIN [http://en.wikipedia.org/wiki/Abdominal_aorta]
synonym: "descending abdominal aorta" EXACT [FMA:3789]
synonym: "pars abdominalis aortae" EXACT [FMA:3789]
+synonym: "pars abdominalis aortae" RELATED [BTO:0002976]
synonym: "pars abdominalis aortae" RELATED LATIN [http://en.wikipedia.org/wiki/Abdominal_aorta]
-synonym: "pars abdominalis aortae" RELATED [BTO:0002976]
xref: Abdominal:aorta
xref: BTO:0002976
xref: EFO:0002524
@@ -23110,8 +23109,8 @@
synonym: "inferior constrictor of pharynx" EXACT [FMA:46623]
synonym: "inferior constrictor pharyngeus" EXACT [FMA:46623]
synonym: "inferior pharyngeal constrictor" RELATED [http://en.wikipedia.org/wiki/Inferior_pharyngeal_constrictor_muscle]
+synonym: "musculus constrictor pharyngis inferior" EXACT LATIN [FMA:46623, FMA:TA]
synonym: "musculus constrictor pharyngis inferior" EXACT LATIN [FMA:TA]
-synonym: "musculus constrictor pharyngis inferior" EXACT LATIN [FMA:46623, FMA:TA]
synonym: "musculus constrictor pharyngis inferior" RELATED LATIN [http://en.wikipedia.org/wiki/Inferior_pharyngeal_constrictor_muscle]
xref: EMAPA:18965
xref: FMA:46623
@@ -23250,8 +23249,8 @@
synonym: "craniofacial muscle" RELATED [EMAPA:25133]
synonym: "face muscle" EXACT [FMA:46751]
synonym: "face muscle organ" EXACT [OBOL:automatic]
+synonym: "facial muscle" EXACT [XAO:0001013]
synonym: "facial muscle" EXACT [FMA:46751]
-synonym: "facial muscle" EXACT [XAO:0001013]
synonym: "facial muscle proper" EXACT []
synonym: "facial nerve innervated muscle" EXACT [https://orcid.org/0000-0002-6601-2165]
synonym: "facial nerve muscle" EXACT []
@@ -23332,7 +23331,7 @@
xref: FMA:46787
xref: GAID:830
xref: HBA:9300
-xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=32
+xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=32 {source="NIFSTD:birnlex_1319"}
xref: http://linkedlifedata.com/resource/umls/id/C0028938
xref: http://linkedlifedata.com/resource/umls/id/C1268984
xref: http://www.snomedbrowser.com/Codes/Details/180937006
@@ -23448,8 +23447,8 @@
synonym: "precava" RELATED []
synonym: "superior caval vein" EXACT [http://orcid.org/0000-0002-6601-2165]
synonym: "superior vena cava" EXACT [FMA:4720]
+synonym: "vena cava superior" RELATED [BTO:0002683]
synonym: "vena cava superior" RELATED LATIN [http://en.wikipedia.org/wiki/Superior_vena_cava]
-synonym: "vena cava superior" RELATED [BTO:0002683]
synonym: "vena maxima" RELATED LATIN [http://en.wikipedia.org/wiki/Superior_vena_cava]
xref: BTO:0002683
xref: EHDAA:8726
@@ -24843,7 +24842,7 @@
xref: FMA:50864
xref: GAID:829
xref: HBA:9316
-xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=488 {source="NIFSTD:birnlex_1646"}
+xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=488
xref: http://linkedlifedata.com/resource/umls/id/C0028864
xref: http://www.snomedbrowser.com/Codes/Details/362456009
xref: MA:0001095
@@ -24955,7 +24954,7 @@
xref: OpenCyc:Mx4rwMF8CJwpEbGdrcN5Y29ycA
xref: TAO:0000697
xref: Trigeminal:nerve
-xref: UMLS:C0040996 {source="ncithesaurus:Trigeminal_Nerve"}
+xref: UMLS:C0040996 {source="NIFSTD:birnlex_869"}
xref: VHOG:0000704
xref: XAO:0003092
xref: ZFA:0000697
@@ -25057,7 +25056,7 @@
xref: NCIT:C12714
xref: OpenCyc:Mx4rvthgEpwpEbGdrcN5Y29ycA
xref: TAO:0000664
-xref: UMLS:C0015462 {source="ncithesaurus:Facial_Nerve"}
+xref: UMLS:C0015462 {source="NIFSTD:birnlex_827"}
xref: VHOG:0000706
xref: XAO:0003094
xref: ZFA:0000664
@@ -25113,7 +25112,7 @@
xref: NCIT:C12996
xref: OpenCyc:Mx4rvVjMFZwpEbGdrcN5Y29ycA
xref: TAO:0000247
-xref: UMLS:C0001162 {source="ncithesaurus:Vestibulocochlear_Nerve"}
+xref: UMLS:C0001162 {source="NIFSTD:birnlex_890"}
xref: UMLS:C1278835 {source="NIFSTD:birnlex_890"}
xref: Vestibulocochlear:nerve
xref: VHOG:0000695
@@ -25164,7 +25163,7 @@
xref: NCIT:C12723
xref: OpenCyc:Mx4rwIr5X5wpEbGdrcN5Y29ycA
xref: TAO:0000668
-xref: UMLS:C0017679 {source="NIFSTD:birnlex_899"}
+xref: UMLS:C0017679 {source="ncithesaurus:Glossopharyngeal_Nerve"}
xref: UMLS:C1305752 {source="NIFSTD:birnlex_899"}
xref: VHOG:0000701
xref: XAO:0003096
@@ -25212,7 +25211,7 @@
xref: MESH:D007002
xref: NCIT:C12732
xref: OpenCyc:Mx4rv9eWA5wpEbGdrcN5Y29ycA
-xref: UMLS:C0020614 {source="NIFSTD:birnlex_820"}
+xref: UMLS:C0020614 {source="ncithesaurus:Hypoglossal_Nerve"}
xref: VHOG:0000693
xref: XAO:0004215
is_a: UBERON:0001785 ! cranial nerve
@@ -25731,8 +25730,8 @@
subset: uberon_slim
synonym: "butterfly bone" RELATED [http://en.wikipedia.org/wiki/Sphenoid_bone]
synonym: "os sphenoidale" EXACT LATIN [FMA:52736, FMA:TA]
+synonym: "os sphenoidale" RELATED LATIN [http://en.wikipedia.org/wiki/Sphenoid_bone]
synonym: "os sphenoidale" RELATED [http://en.wikipedia.org/wiki/Sphenoid_bone]
-synonym: "os sphenoidale" RELATED LATIN [http://en.wikipedia.org/wiki/Sphenoid_bone]
synonym: "os sphenoidum" RELATED [http://en.wikipedia.org/wiki/Sphenoid_bone]
synonym: "sphenoid" EXACT []
synonym: "sphenoid complex" RELATED []
@@ -25921,8 +25920,8 @@
synonym: "os zygomaticum" EXACT [FMA:52747, FMA:TA]
synonym: "os zygomaticum" RELATED LATIN [http://en.wikipedia.org/wiki/Zygomatic_bone]
synonym: "os zygomaticus" RELATED [http://en.wikipedia.org/wiki/Zygomatic_bone]
+synonym: "zygoma" RELATED [GAID:225]
synonym: "zygoma" RELATED [http://en.wikipedia.org/wiki/Zygomatic_bone]
-synonym: "zygoma" RELATED [GAID:225]
synonym: "zygomatic" RELATED []
synonym: "zygomatic bone" EXACT HUMAN_PREFERRED [https://github.com/obophenotype/uberon/issues/121, MA:0001497]
xref: EMAPA:25111
@@ -25953,8 +25952,8 @@
synonym: "lower jaw bone" BROAD SENSU []
synonym: "lower mandibula" NARROW SENSU [http://en.wikipedia.org/wiki/Mandible]
synonym: "mammaliam mandible" EXACT []
+synonym: "mandibula" RELATED [BTO:0001748]
synonym: "mandibula" RELATED LATIN [http://en.wikipedia.org/wiki/Human_mandible]
-synonym: "mandibula" RELATED [BTO:0001748]
synonym: "mandibular series" RELATED [ZFA:0001273]
synonym: "mandibulla" EXACT []
xref: BTO:0001748
@@ -25986,8 +25985,8 @@
synonym: "hyoid bone" RELATED [http://en.wikipedia.org/wiki/Hyoid_bone]
synonym: "hyoideum" RELATED [http://en.wikipedia.org/wiki/Hyoid_bone]
synonym: "lingual bone" RELATED [http://en.wikipedia.org/wiki/Hyoid_bone]
+synonym: "os hyoideum" RELATED LATIN [http://en.wikipedia.org/wiki/Hyoid_bone]
synonym: "os hyoideum" RELATED [http://en.wikipedia.org/wiki/Hyoid_bone]
-synonym: "os hyoideum" RELATED LATIN [http://en.wikipedia.org/wiki/Hyoid_bone]
xref: AAO:0000684
xref: EMAPA:18650
xref: FMA:52749
@@ -26433,8 +26432,8 @@
synonym: "ganglion genicularum" EXACT [FMA:53414]
synonym: "ganglion geniculi" RELATED [http://en.wikipedia.org/wiki/Geniculate_ganglion]
synonym: "ganglion geniculi nervi facialis" RELATED LATIN [http://en.wikipedia.org/wiki/Geniculate_ganglion]
+synonym: "genicular ganglion" EXACT [http://en.wikipedia.org/wiki/Geniculate_ganglion]
synonym: "genicular ganglion" EXACT [FMA:53414]
-synonym: "genicular ganglion" EXACT [http://en.wikipedia.org/wiki/Geniculate_ganglion]
synonym: "geniculate" BROAD [http://en.wikipedia.org/wiki/Geniculate_ganglion]
synonym: "geniculate ganglion" RELATED [MA:0001076]
synonym: "gVII" EXACT [ZFA:0001291]
@@ -26591,8 +26590,8 @@
subset: uberon_slim
synonym: "septal cartilage" RELATED [http://en.wikipedia.org/wiki/Nasal_septum]
synonym: "septum mobile nasi" RELATED [http://en.wikipedia.org/wiki/Nasal_septum]
+synonym: "septum nasi" RELATED LATIN [http://en.wikipedia.org/wiki/Nasal_septum]
synonym: "septum nasi" RELATED [http://en.wikipedia.org/wiki/Nasal_septum]
-synonym: "septum nasi" RELATED LATIN [http://en.wikipedia.org/wiki/Nasal_septum]
synonym: "septum of the nose" RELATED [http://en.wikipedia.org/wiki/Nasal_septum]
xref: AAO:0000559
xref: AAO:0010135
@@ -26876,8 +26875,8 @@
subset: vertebrate_core
synonym: "motor nucleus III" RELATED []
synonym: "nIII" RELATED []
+synonym: "nucleus nervi oculomotorii" EXACT [FMA:TA]
synonym: "nucleus nervi oculomotorii" EXACT LATIN [FMA:54510, FMA:TA]
-synonym: "nucleus nervi oculomotorii" EXACT [FMA:TA]
synonym: "nucleus oculomotorius" RELATED LATIN [NeuroNames:492]
synonym: "nucleus of oculomotor nerve" EXACT [FMA:54510]
synonym: "nucleus of oculomotor nuclear complex" EXACT [http://orcid.org/0000-0002-6601-2165]
@@ -26899,7 +26898,7 @@
xref: EV:0100250
xref: FMA:54510
xref: HBA:9030
-xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=492
+xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=492 {source="NIFSTD:birnlex_1240"}
xref: http://en.wikipedia.org/wiki/Nucleus_of_oculomotor_nerve
xref: http://linkedlifedata.com/resource/umls/id/C0228686
xref: http://www.snomedbrowser.com/Codes/Details/362457000
@@ -27051,7 +27050,7 @@
xref: EV:0100292
xref: FMA:54588
xref: HBA:9516
-xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=765
+xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=765 {source="NIFSTD:birnlex_2650"}
xref: http://linkedlifedata.com/resource/umls/id/C0152400
xref: http://linkedlifedata.com/resource/umls/id/C1281211
xref: http://www.snomedbrowser.com/Codes/Details/280184006
@@ -27059,7 +27058,7 @@
xref: MBA:135
xref: NCIT:C12835
xref: Nucleus:ambiguus
-xref: UMLS:C0152400 {source="NIFSTD:birnlex_2650"}
+xref: UMLS:C0152400 {source="ncithesaurus:Nucleus_Ambiguus"}
xref: UMLS:C1281211 {source="NIFSTD:birnlex_2650"}
is_a: UBERON:0007635 ! nucleus of medulla oblongata
is_a: UBERON:0011775 {source="Wikipedia"} ! vagus nerve nucleus
@@ -27252,7 +27251,7 @@
xref: http://www.snomedbrowser.com/Codes/Details/368728006
xref: MA:0001593
xref: NCIT:C33258
-xref: UMLS:C0226964 {source="NIFSTD:birnlex_4102"}
+xref: UMLS:C0226964 {source="ncithesaurus:Papilla_of_the_Tongue"}
xref: UMLS:C1289183 {source="NIFSTD:birnlex_4102"}
is_a: UBERON:0000064 ! organ part
relationship: part_of UBERON:0005020 ! mucosa of tongue
@@ -27851,8 +27850,8 @@
subset: pheno_slim
subset: uberon_slim
subset: vertebrate_core
+synonym: "dentin" EXACT [ZFA:0005143]
synonym: "dentin" EXACT [MA:0002542]
-synonym: "dentin" EXACT [ZFA:0005143]
synonym: "dentine of tooth" EXACT []
synonym: "predentin" NARROW [GO:0070468]
xref: BTO:0003453
@@ -28245,8 +28244,8 @@
comment: This structure regresses in most males
subset: pheno_slim
subset: uberon_slim
+synonym: "ductus lactiferi" RELATED [BTO:0002845]
synonym: "ductus lactiferi" RELATED LATIN [http://en.wikipedia.org/wiki/Lactiferous_duct]
-synonym: "ductus lactiferi" RELATED [BTO:0002845]
synonym: "galactophorous duct" RELATED [http://en.wikipedia.org/wiki/Lactiferous_duct]
synonym: "galactophorous tubule" RELATED [BTO:0002845]
synonym: "lactiferous duct" EXACT [FMA:58006]
@@ -28894,7 +28893,7 @@
xref: MA:0001307
xref: MESH:D005584
xref: NCIT:C26463
-xref: UMLS:C0016622 {source="ncithesaurus:Fovea_Centralis"}
+xref: UMLS:C0016622 {source="NIFSTD:birnlex_2543"}
xref: UMLS:C0450290 {source="NIFSTD:birnlex_2543"}
xref: VHOG:0001572
is_a: UBERON:0000064 ! organ part
@@ -29281,8 +29280,8 @@
def: "The chamber in the eyeball enclosing the vitreous humor, bounded anteriorly by the lens and ciliary body and posteriorly by the posterior wall of the eyeball[BTO,modified]." [BTO:0002087]
subset: uberon_slim
synonym: "camera postrema" EXACT [FMA:58848]
+synonym: "camera postrema bulbi oculi" EXACT [FMA:TA]
synonym: "camera postrema bulbi oculi" EXACT LATIN [FMA:58848, FMA:TA]
-synonym: "camera postrema bulbi oculi" EXACT [FMA:TA]
synonym: "camera vitrea" EXACT [FMA:58848]
synonym: "camera vitrea bulbi" EXACT [FMA:58848]
synonym: "postremal chamber" EXACT [FMA:58848]
@@ -29461,8 +29460,8 @@
synonym: "ganglion of sympathetic nervous system" EXACT [OBOL:automatic]
synonym: "ganglion of sympathetic part of autonomic division of nervous system" EXACT [OBOL:automatic]
synonym: "ganglion sympatheticum" EXACT []
+synonym: "ganglion sympathicum" RELATED [BTO:0001333]
synonym: "ganglion sympathicum" RELATED LATIN [http://en.wikipedia.org/wiki/Sympathetic_ganglion]
-synonym: "ganglion sympathicum" RELATED [BTO:0001333]
synonym: "sympathetic nervous system ganglion" EXACT [OBOL:automatic]
synonym: "sympathetic part of autonomic division of nervous system ganglion" EXACT [OBOL:automatic]
xref: AAO:0010773
@@ -30537,7 +30536,7 @@
xref: NCIT:C12499
xref: OpenCyc:Mx4rwJ8SsJwpEbGdrcN5Y29ycA
xref: TAO:0000217
-xref: UMLS:C0022889 {source="ncithesaurus:Internal_Ear"}
+xref: UMLS:C0022889 {source="NIFSTD:birnlex_1196"}
xref: UMLS:C1268973 {source="NIFSTD:birnlex_1196"}
xref: VHOG:0000284
xref: XAO:0000192
@@ -30663,8 +30662,8 @@
subset: pheno_slim
subset: uberon_slim
subset: vertebrate_core
+synonym: "endolympha" RELATED LATIN [http://en.wikipedia.org/wiki/Endolymph]
synonym: "endolympha" RELATED [http://en.wikipedia.org/wiki/Endolymph]
-synonym: "endolympha" RELATED LATIN [http://en.wikipedia.org/wiki/Endolymph]
synonym: "endolymphatic fluid" EXACT []
synonym: "Scarpa's fluid" RELATED [http://en.wikipedia.org/wiki/Endolymph]
xref: EMAPA:36548
@@ -30755,8 +30754,8 @@
synonym: "cochlea duct" EXACT [NIFSTD:birnlex_2562]
synonym: "cochlear aqueduct" RELATED []
synonym: "cochlear duct" EXACT []
+synonym: "ductus cochlearis" RELATED LATIN [BTO:0001692]
synonym: "ductus cochlearis" RELATED LATIN [http://en.wikipedia.org/wiki/Cochlear_duct]
-synonym: "ductus cochlearis" RELATED LATIN [BTO:0001692]
synonym: "membranous cochlea" RELATED [BTO:0001692]
synonym: "Reissner's canal" EXACT [FMA:61119]
synonym: "Reissners canal" EXACT [NIFSTD:birnlex_2562]
@@ -30779,7 +30778,7 @@
xref: MESH:D003053
xref: NCIT:C32335
xref: UMLS:C1281166 {source="NIFSTD:birnlex_2562"}
-xref: UMLS:C1323110 {source="NIFSTD:birnlex_2562"}
+xref: UMLS:C1323110 {source="ncithesaurus:Cochlear_Duct"}
xref: VHOG:0000507
is_a: UBERON:0000025 ! tube
is_a: UBERON:0004121 ! ectoderm-derived structure
@@ -31126,7 +31125,7 @@
xref: FMA:61825
xref: GAID:635
xref: HBA:4132
-xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=125 {source="NIFSTD:birnlex_1160"}
+xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=125
xref: http://linkedlifedata.com/resource/umls/id/C0039485
xref: http://linkedlifedata.com/resource/umls/id/C1268978
xref: http://www.snomedbrowser.com/Codes/Details/180921000
@@ -31159,7 +31158,7 @@
xref: FMA:61826
xref: GAID:680
xref: HBA:4084
-xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=95 {source="NIFSTD:birnlex_1148"}
+xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=95
xref: http://linkedlifedata.com/resource/umls/id/C0030560
xref: http://www.snomedbrowser.com/Codes/Details/180922007
xref: MAT:0000506
@@ -31208,7 +31207,7 @@
xref: NCIT:C12451
xref: OpenCyc:Mx4rvvyAjJwpEbGdrcN5Y29ycA
xref: PBA:10082
-xref: UMLS:C0007461 {source="ncithesaurus:Caudate_Nucleus"}
+xref: UMLS:C0007461 {source="NIFSTD:birnlex_1373"}
is_a: UBERON:0009663 ! telencephalic nucleus
relationship: part_of UBERON:0005383 {source="MA"} ! caudate-putamen
@@ -31279,7 +31278,7 @@
xref: MESH:A08.186.211.730.885.105.487.397
xref: NCIT:C12449
xref: PBA:10097
-xref: UMLS:C0017651 {source="NIFSTD:birnlex_1234"}
+xref: UMLS:C0017651 {source="ncithesaurus:Globus_Pallidus"}
is_a: UBERON:0009663 ! telencephalic nucleus
relationship: develops_from UBERON:0001894 ! diencephalon
relationship: part_of UBERON:0001869 ! cerebral hemisphere
@@ -31301,8 +31300,8 @@
synonym: "amygdaloid nucleus" RELATED [FMA:61841]
synonym: "archistriatum" EXACT []
synonym: "corpus amygdalae" RELATED LATIN [NeuroNames:237]
+synonym: "corpus amygdaloideum" RELATED LATIN [http://en.wikipedia.org/wiki/Amygdala]
synonym: "corpus amygdaloideum" RELATED [BTO:0001042]
-synonym: "corpus amygdaloideum" RELATED LATIN [http://en.wikipedia.org/wiki/Amygdala]
synonym: "nucleus amygdalae" RELATED [BTO:0001042]
xref: BAMS:Amg
xref: BAMS:AMY
@@ -31333,7 +31332,7 @@
xref: NCIT:C12440
xref: OpenCyc:Mx4rwJC_2ZwpEbGdrcN5Y29ycA
xref: PBA:4002
-xref: UMLS:C0002708 {source="ncithesaurus:Amygdala"}
+xref: UMLS:C0002708 {source="NIFSTD:birnlex_1241"}
xref: VHOG:0001277
is_a: UBERON:0002420 {source="FMA"} ! basal ganglion
is_a: UBERON:0005401 ! cerebral hemisphere gray matter
@@ -31416,7 +31415,7 @@
xref: EMAPA:35598
xref: FMA:61882
xref: HBA:4309
-xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=265 {source="NIFSTD:birnlex_719"}
+xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=265
xref: http://en.wikipedia.org/wiki/Nucleus_of_diagonal_band
xref: http://linkedlifedata.com/resource/umls/id/C0175227
xref: MA:0000936
@@ -31461,7 +31460,7 @@
xref: EMAPA:35169
xref: FMA:61884
xref: HBA:4313
-xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=267
+xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=267 {source="NIFSTD:birnlex_724"}
xref: http://linkedlifedata.com/resource/umls/id/C0228365
xref: MA:0000925
xref: MBA:351
@@ -31528,7 +31527,7 @@
xref: FMA:61889
xref: GAID:672
xref: HBA:4290
-xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=277
+xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=277 {source="NIFSTD:birnlex_727"}
xref: http://linkedlifedata.com/resource/umls/id/C0028633
xref: http://www.snomedbrowser.com/Codes/Details/427667007
xref: MA:0000892
@@ -31719,7 +31718,7 @@
xref: MESH:D020772
xref: NCIT:C13082
xref: PBA:10102
-xref: UMLS:C0152341 {source="ncithesaurus:Internal_Capsule"}
+xref: UMLS:C0152341 {source="NIFSTD:birnlex_1659"}
is_a: UBERON:0002437 ! cerebral hemisphere white matter
[Term]
@@ -31735,8 +31734,8 @@
synonym: "lateral olfactory tract. body" RELATED [BAMS:lot]
synonym: "LOT" RELATED ABBREVIATION []
synonym: "olfactory tract" RELATED [NeuroNames:284]
+synonym: "stria olfactoria lateralis" RELATED LATIN [NeuroNames:284]
synonym: "stria olfactoria lateralis" RELATED LATIN [http://en.wikipedia.org/wiki/Lateral_olfactory_stria]
-synonym: "stria olfactoria lateralis" RELATED LATIN [NeuroNames:284]
synonym: "tractus olfactorius lateralis" EXACT LATIN [ZFA:0000229]
synonym: "tractus olfactorius lateralis" RELATED LATIN [NeuroNames:284]
xref: BAMS:LDTR
@@ -31980,7 +31979,7 @@
xref: FMA:62001
xref: GAID:618
xref: HBA:4391
-xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=288
+xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=288 {source="NIFSTD:birnlex_1503"}
xref: http://en.wikipedia.org/wiki/Diencephalon
xref: http://linkedlifedata.com/resource/umls/id/C0012144
xref: http://www.snomedbrowser.com/Codes/Details/279328001
@@ -32068,7 +32067,7 @@
xref: EV:0100275
xref: FMA:62004
xref: GAID:590
-xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=698
+xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=698 {source="NIFSTD:birnlex_957"}
xref: http://en.wikipedia.org/wiki/Bone_marrow_of_ovary_oblongata
xref: http://linkedlifedata.com/resource/umls/id/C0025148
xref: http://linkedlifedata.com/resource/umls/id/C1269575
@@ -32122,7 +32121,7 @@
xref: GAID:656
xref: galen:Thalamus
xref: HBA:4392
-xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=300
+xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=300 {source="NIFSTD:birnlex_954"}
xref: http://en.wikipedia.org/wiki/Thalamus
xref: http://linkedlifedata.com/resource/umls/id/C0039729
xref: http://www.snomedbrowser.com/Codes/Details/244433007
@@ -32135,7 +32134,7 @@
xref: OpenCyc:Mx4rwMPQ65wpEbGdrcN5Y29ycA
xref: PBA:128013014
xref: TAO:0001215
-xref: UMLS:C0039729 {source="ncithesaurus:Thalamus"}
+xref: UMLS:C0039729 {source="NIFSTD:birnlex_954"}
xref: VHOG:0000657
xref: ZFA:0001215
is_a: UBERON:0002616 ! regional part of brain
@@ -32170,7 +32169,7 @@
xref: GAID:460
xref: galen:Hypothalamus
xref: HBA:4540
-xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=292 {source="NIFSTD:birnlex_734"}
+xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=292
xref: http://en.wikipedia.org/wiki/Hypothalamus
xref: http://linkedlifedata.com/resource/umls/id/C0020663
xref: http://www.snomedbrowser.com/Codes/Details/264483005
@@ -32234,7 +32233,7 @@
xref: OpenCyc:Mx4rvneLQpwpEbGdrcN5Y29ycA
xref: PBA:128013147
xref: TAO:0000509
-xref: UMLS:C0152361 {source="ncithesaurus:Epithalamus"}
+xref: UMLS:C0152361 {source="NIFSTD:birnlex_1710"}
xref: VHOG:0000178
xref: ZFA:0000509
is_a: UBERON:0002616 ! regional part of brain
@@ -32255,8 +32254,8 @@
synonym: "subthalamic region" EXACT [FMA:62010, NIFSTD:birnlex_708]
synonym: "subthalamus" EXACT [http://en.wikipedia.org/wiki/Thalamus, NIFSTD:birnlex_708]
synonym: "thalamus ventralis" EXACT LATIN [NIFSTD:birnlex_708]
+synonym: "ventral thalamus" EXACT [GO:0021539]
synonym: "ventral thalamus" EXACT [MA:0000181]
-synonym: "ventral thalamus" EXACT [GO:0021539]
xref: BAMS:SbTh
xref: BAMS:Ventral_thalamus
xref: BAMS:VNT
@@ -32433,8 +32432,8 @@
synonym: "epiphysis" RELATED INCONSISTENT [ZFA:0000019]
synonym: "epiphysis cerebri" RELATED [http://en.wikipedia.org/wiki/Epiphysis_cerebri]
synonym: "frontal organ" RELATED [VHOG:0000051]
+synonym: "glandula pinealis" EXACT LATIN [FMA:62033, FMA:TA]
synonym: "glandula pinealis" EXACT LATIN [FMA:TA]
-synonym: "glandula pinealis" EXACT LATIN [FMA:62033, FMA:TA]
synonym: "Pi" BROAD ABBREVIATION [http://uri.neuinfo.org/nif/nifstd/birnlex_1184, NIFSTD:NeuroNames_abbrevSource]
synonym: "pineal" RELATED [VHOG:0000051]
synonym: "pineal gland" EXACT [FMA:62033]
@@ -32471,7 +32470,7 @@
xref: OpenCyc:Mx4rv2FMGpwpEbGdrcN5Y29ycA
xref: Pineal:gland
xref: TAO:0000019
-xref: UMLS:C0031939 {source="ncithesaurus:Pineal_Gland"}
+xref: UMLS:C0031939 {source="NIFSTD:birnlex_1184"}
xref: VHOG:0000051
xref: XAO:0000160
xref: ZFA:0000019
@@ -32569,7 +32568,7 @@
xref: FMA:62046
xref: GAID:735
xref: HBA:9309
-xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=460
+xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=460 {source="NIFSTD:birnlex_1684"}
xref: http://linkedlifedata.com/resource/umls/id/C0152405
xref: http://www.snomedbrowser.com/Codes/Details/280952003
xref: MA:0001099
@@ -32578,7 +32577,7 @@
xref: NCIT:C33218
xref: Optic:tract
xref: TAO:0000252
-xref: UMLS:C0152405 {source="NIFSTD:birnlex_1684"}
+xref: UMLS:C0152405 {source="ncithesaurus:Optic_Tract"}
xref: VHOG:0001164
xref: XAO:0004101
xref: ZFA:0000252
@@ -32594,8 +32593,8 @@
subset: uberon_slim
subset: vertebrate_core
synonym: "commissura habenularis" RELATED LATIN [NeuroNames:299]
+synonym: "commissura habenularum" EXACT [ZFA:0000359]
synonym: "commissura habenularum" EXACT LATIN [http://en.wikipedia.org/wiki/Habenular_commissure]
-synonym: "commissura habenularum" EXACT [ZFA:0000359]
synonym: "commissure habenularum" EXACT [MP:0008231]
synonym: "habenular commissure (Haller)" RELATED [NeuroNames:299]
synonym: "habenular commisure" RELATED [BAMS:hbc]
@@ -32611,7 +32610,7 @@
xref: FMA:62048
xref: Habenular:commissure
xref: HBA:9227
-xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=299
+xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=299 {source="NIFSTD:birnlex_1609"}
xref: http://linkedlifedata.com/resource/umls/id/C0152363
xref: http://www.snomedbrowser.com/Codes/Details/279335009
xref: MBA:611
@@ -32645,7 +32644,7 @@
xref: FMA:62064
xref: GAID:736
xref: HBA:265505190
-xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=433 {source="NIFSTD:birnlex_908"}
+xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=433
xref: http://en.wikipedia.org/wiki/Medial_forebrain_bundle
xref: http://linkedlifedata.com/resource/umls/id/C0025055
xref: MBA:54
@@ -32652,7 +32651,7 @@
xref: MESH:D008474
xref: NCIT:C13083
xref: TAO:0005111
-xref: UMLS:C0025055 {source="NIFSTD:birnlex_908"}
+xref: UMLS:C0025055 {source="ncithesaurus:Medial_Forebrain_Bundle"}
xref: ZFA:0005111
is_a: UBERON:0005838 ! fasciculus of brain
disjoint_from: UBERON:2007012 {source="lexical"} ! lateral forebrain bundle
@@ -33089,8 +33088,8 @@
synonym: "lateral geniculate nucleus" EXACT []
synonym: "LGB" RELATED ABBREVIATION [BTO:0004367]
synonym: "LGN" BROAD ABBREVIATION [http://uri.neuinfo.org/nif/nifstd/birnlex_1662, NIFSTD:NeuroNames_abbrevSource]
+synonym: "nucleus corporis geniculati lateralis" RELATED LATIN [NeuroNames:352]
synonym: "nucleus corporis geniculati lateralis" RELATED [BAMS:LG]
-synonym: "nucleus corporis geniculati lateralis" RELATED LATIN [NeuroNames:352]
synonym: "nucleus geniculatus lateralis" EXACT [NIFSTD:birnlex_1662]
xref: BAMS:C.gl.
xref: BAMS:LG
@@ -33153,7 +33152,7 @@
xref: MA:0000870
xref: MBA:475
xref: NCIT:C32843
-xref: UMLS:C0086596 {source="ncithesaurus:Internal_Geniculate_Body"}
+xref: UMLS:C0086596 {source="NIFSTD:birnlex_1670"}
is_a: UBERON:0007245 ! nuclear complex of neuraxis
is_a: UBERON:0019269 ! gray matter of diencephalon
relationship: part_of UBERON:0002105 {source="NIFSTD"} ! vestibulo-auditory system
@@ -33189,7 +33188,7 @@
xref: FMA:62313
xref: GAID:644
xref: HBA:4541
-xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=377 {source="NIFSTD:birnlex_1706"}
+xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=377
xref: http://linkedlifedata.com/resource/umls/id/C0033063
xref: http://linkedlifedata.com/resource/umls/id/C1284641
xref: http://www.snomedbrowser.com/Codes/Details/362382004
@@ -33279,7 +33278,7 @@
xref: FMA:62320
xref: GAID:643
xref: HBA:12905
-xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=387
+xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=387 {source="NIFSTD:birnlex_1407"}
xref: http://en.wikipedia.org/wiki/Paraventricular_nucleus_of_hypothalamus
xref: http://linkedlifedata.com/resource/umls/id/C0030532
xref: http://www.snomedbrowser.com/Codes/Details/369131006
@@ -33310,7 +33309,7 @@
xref: EMAPA:35483
xref: FMA:62326
xref: HBA:4552
-xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=381
+xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=381 {source="NIFSTD:birnlex_1722"}
xref: http://linkedlifedata.com/resource/umls/id/C0175312
xref: http://linkedlifedata.com/resource/umls/id/C1289556
xref: http://www.snomedbrowser.com/Codes/Details/369129002
@@ -33383,7 +33382,7 @@
xref: birnlex:1569
xref: EMAPA:37732 {source="MA:th"}
xref: FMA:62330
-xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=396
+xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=396 {source="NIFSTD:birnlex_1569"}
xref: http://linkedlifedata.com/resource/umls/id/C0262326
xref: MA:0000841
xref: MBA:173
@@ -33406,8 +33405,8 @@
synonym: "dorsomedial nucleus of intermediate hypothalamus" EXACT []
synonym: "dorsomedial nucleus of the hypothalamus" RELATED [NeuroNames:397]
synonym: "nucleus dorsomedialis hypothalami" RELATED LATIN [NeuroNames:397]
+synonym: "nucleus dorsomedialis hypothalamicae intermediae" RELATED [BTO:0002474]
synonym: "nucleus dorsomedialis hypothalamicae intermediae" RELATED LATIN [http://en.wikipedia.org/wiki/Dorsomedial_hypothalamic_nucleus]
-synonym: "nucleus dorsomedialis hypothalamicae intermediae" RELATED [BTO:0002474]
synonym: "nucleus hypothalamicus dorsomedialis" RELATED LATIN [NeuroNames:397]
xref: BAMS:DM
xref: BAMS:DMH
@@ -33459,7 +33458,7 @@
xref: FMA:62332
xref: GAID:650
xref: HBA:12919
-xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=398
+xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=398 {source="NIFSTD:birnlex_1572"}
xref: http://en.wikipedia.org/wiki/Ventromedial_hypothalamic_nucleus
xref: http://linkedlifedata.com/resource/umls/id/C0042518
xref: http://www.snomedbrowser.com/Codes/Details/369124007
@@ -33523,7 +33522,7 @@
xref: birnlex:1199
xref: EV:0100234
xref: FMA:62337
-xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1347 {source="NIFSTD:birnlex_1199"}
+xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1347
xref: http://linkedlifedata.com/resource/umls/id/C0086527
xref: http://www.snomedbrowser.com/Codes/Details/360452004
xref: Lateral:hypothalamus
@@ -33586,7 +33585,7 @@
xref: EV:0100238
xref: FMA:62342
xref: HBA:4672
-xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=376
+xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=376 {source="NIFSTD:birnlex_1299"}
xref: http://linkedlifedata.com/resource/umls/id/C0175329
xref: http://linkedlifedata.com/resource/umls/id/C1289568
xref: http://www.snomedbrowser.com/Codes/Details/369141009
@@ -33641,7 +33640,7 @@
xref: EMAPA:35479
xref: FMA:62372
xref: HBA:4524
-xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=295
+xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=295 {source="NIFSTD:birnlex_1438"}
xref: http://linkedlifedata.com/resource/umls/id/C0228390
xref: http://www.snomedbrowser.com/Codes/Details/361538005
xref: MA:0000831
@@ -33676,7 +33675,7 @@
xref: FMA:62373
xref: Habenular:nuclei
xref: HBA:4523
-xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=294 {source="NIFSTD:birnlex_1431"}
+xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=294
xref: http://linkedlifedata.com/resource/umls/id/C0228389
xref: MA:0000832
xref: MBA:483
@@ -33750,7 +33749,7 @@
xref: EMAPA:32778
xref: FMA:62402
xref: HBA:9079
-xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=467
+xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=467 {source="NIFSTD:birnlex_703"}
xref: http://en.wikipedia.org/wiki/Pretectum
xref: http://linkedlifedata.com/resource/umls/id/C0175354
xref: http://www.snomedbrowser.com/Codes/Details/416333003
@@ -33851,7 +33850,7 @@
xref: FMA:62404
xref: GAID:575
xref: HBA:9102
-xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=476
+xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=476 {source="NIFSTD:birnlex_806"}
xref: http://linkedlifedata.com/resource/umls/id/C0228411
xref: Inferior:colliculus
xref: MA:0001067
@@ -34109,7 +34108,7 @@
xref: NCIT:C32374
xref: OpenCyc:Mx4rv3piFJwpEbGdrcN5Y29ycA
xref: PBA:128012244
-xref: UMLS:C0019564 {source="NIFSTD:birnlex_721"}
+xref: UMLS:C0019564 {source="ncithesaurus:Hippocampus"}
xref: VHOG:0001177
is_a: UBERON:0002616 ! regional part of brain
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
@@ -35015,8 +35014,8 @@
subset: pheno_slim
subset: uberon_slim
subset: vertebrate_core
+synonym: "ganglion cervicale superius" RELATED LATIN [http://en.wikipedia.org/wiki/Superior_cervical_ganglion]
synonym: "ganglion cervicale superius" RELATED [BTO:0001325]
-synonym: "ganglion cervicale superius" RELATED LATIN [http://en.wikipedia.org/wiki/Superior_cervical_ganglion]
synonym: "SCG" RELATED ABBREVIATION [ZFA:0001572]
synonym: "superior cervical sympathetic ganglion" EXACT []
synonym: "superior sympathetic cervical ganglion" RELATED []
@@ -35094,8 +35093,8 @@
synonym: "stratum papillare (dermis)" EXACT LATIN [FMA:64776, FMA:TA]
synonym: "stratum papillare corii" EXACT [MP:0009545]
synonym: "stratum papillare dermis" EXACT LATIN [FMA:64776, FMA:TA]
+synonym: "superficial dermis" EXACT [MP:0009545]
synonym: "superficial dermis" EXACT [MA:0000802]
-synonym: "superficial dermis" EXACT [MP:0009545]
xref: EMAPA:35282
xref: FMA:64776
xref: http://linkedlifedata.com/resource/umls/id/C0221930
@@ -35232,7 +35231,7 @@
xref: EHDAA2:0001228
xref: EMAPA:17606
xref: FMA:64803
-xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1900
+xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1900 {source="NIFSTD:birnlex_2703"}
xref: http://linkedlifedata.com/resource/umls/id/C0599332
xref: http://www.snomedbrowser.com/Codes/Details/37623003
xref: MA:0001325
@@ -35842,7 +35841,7 @@
xref: NCIT:C12355
xref: Occipital:lobe
xref: OpenCyc:Mx4rv9OFy5wpEbGdrcN5Y29ycA
-xref: UMLS:C0028785 {source="ncithesaurus:Occipital_Lobe"}
+xref: UMLS:C0028785 {source="NIFSTD:birnlex_1136"}
is_a: UBERON:0016526 {source="FMA"} ! lobe of cerebral hemisphere
[Term]
@@ -35859,11 +35858,11 @@
synonym: "insula lobule" EXACT [FMA:67329]
synonym: "insula of Reil" RELATED [NeuroNames:111]
synonym: "insula Reilii" RELATED LATIN [NeuroNames:111]
+synonym: "insular cortex" NARROW [FMA:67329]
synonym: "insular cortex" NARROW [NIFSTD:birnlex_1117]
-synonym: "insular cortex" NARROW [FMA:67329]
synonym: "insular gyrus" RELATED [NeuroNames:111]
+synonym: "insular lobe" EXACT [FMA:67329]
synonym: "insular lobe" EXACT [NIFSTD:nlx_11342]
-synonym: "insular lobe" EXACT [FMA:67329]
synonym: "insular region" EXACT [FMA:67329]
synonym: "insulary cortex" RELATED [BTO:0001105]
synonym: "island of Reil" EXACT [FMA:67329]
@@ -36073,7 +36072,7 @@
xref: MIAA:0000107
xref: NCIT:C40336
xref: TAO:0000029
-xref: UMLS:C0035507 {source="NIFSTD:birnlex_942"}
+xref: UMLS:C0035507 {source="ncithesaurus:Hind-Brain"}
xref: UMLS:C1522180 {source="NIFSTD:birnlex_942"}
xref: VHOG:0000070
xref: XAO:0000015
@@ -36361,7 +36360,7 @@
xref: NCIT:C12445
xref: OpenCyc:Mx4rvl1eipwpEbGdrcN5Y29ycA
xref: TAO:0000100
-xref: UMLS:C0007765 {source="ncithesaurus:Cerebellum"}
+xref: UMLS:C0007765 {source="NIFSTD:birnlex_1489"}
xref: UMLS:C1268981 {source="NIFSTD:birnlex_1489"}
xref: VHOG:0000024
xref: XAO:0003098
@@ -36398,7 +36397,7 @@
xref: FMA:67947
xref: GAID:581
xref: HBA:9072
-xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=536
+xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=536 {source="NIFSTD:birnlex_789"}
xref: http://linkedlifedata.com/resource/umls/id/C0038590
xref: http://linkedlifedata.com/resource/umls/id/C1269578
xref: http://www.snomedbrowser.com/Codes/Details/279286002
@@ -36407,7 +36406,7 @@
xref: MESH:A08.186.211.132.659.687
xref: NCIT:C12453
xref: Substantia:nigra
-xref: UMLS:C0038590 {source="ncithesaurus:Substantia...
[truncated message content] |
|
From: <cmu...@us...> - 2018-07-28 03:31:13
|
Revision: 5410
http://sourceforge.net/p/obo/svn/5410
Author: cmungall
Date: 2018-07-28 03:31:11 +0000 (Sat, 28 Jul 2018)
Log Message:
-----------
new-release
Added Paths:
-----------
uberon/releases/2018-07-27/
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <cmu...@us...> - 2018-06-21 22:56:47
|
Revision: 5408
http://sourceforge.net/p/obo/svn/5408
Author: cmungall
Date: 2018-06-21 22:56:44 +0000 (Thu, 21 Jun 2018)
Log Message:
-----------
new-release
Added Paths:
-----------
uberon/releases/2018-06-21/
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <cmu...@us...> - 2018-05-14 13:59:46
|
Revision: 5406
http://sourceforge.net/p/obo/svn/5406
Author: cmungall
Date: 2018-05-14 13:59:41 +0000 (Mon, 14 May 2018)
Log Message:
-----------
new-release
Added Paths:
-----------
uberon/releases/2018-05-14/
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <cmu...@us...> - 2018-03-17 00:00:29
|
Revision: 5404
http://sourceforge.net/p/obo/svn/5404
Author: cmungall
Date: 2018-03-17 00:00:28 +0000 (Sat, 17 Mar 2018)
Log Message:
-----------
new-release
Added Paths:
-----------
uberon/releases/2018-03-09/
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <cmu...@us...> - 2018-03-14 01:53:07
|
Revision: 5403
http://sourceforge.net/p/obo/svn/5403
Author: cmungall
Date: 2018-03-14 01:52:15 +0000 (Wed, 14 Mar 2018)
Log Message:
-----------
new release
Modified Paths:
--------------
uberon/trunk/basic.obo
uberon/trunk/basic.owl
uberon/trunk/bridge/uberon-bridge-to-aao.obo
uberon/trunk/bridge/uberon-bridge-to-aao.owl
uberon/trunk/bridge/uberon-bridge-to-aeo.obo
uberon/trunk/bridge/uberon-bridge-to-aeo.owl
uberon/trunk/bridge/uberon-bridge-to-bila.obo
uberon/trunk/bridge/uberon-bridge-to-bila.owl
uberon/trunk/bridge/uberon-bridge-to-caro.obo
uberon/trunk/bridge/uberon-bridge-to-caro.owl
uberon/trunk/bridge/uberon-bridge-to-dhba.obo
uberon/trunk/bridge/uberon-bridge-to-dhba.owl
uberon/trunk/bridge/uberon-bridge-to-dmba.obo
uberon/trunk/bridge/uberon-bridge-to-dmba.owl
uberon/trunk/bridge/uberon-bridge-to-efo.obo
uberon/trunk/bridge/uberon-bridge-to-efo.owl
uberon/trunk/bridge/uberon-bridge-to-ehdaa.obo
uberon/trunk/bridge/uberon-bridge-to-ehdaa.owl
uberon/trunk/bridge/uberon-bridge-to-ehdaa2.obo
uberon/trunk/bridge/uberon-bridge-to-ehdaa2.owl
uberon/trunk/bridge/uberon-bridge-to-emapa.obo
uberon/trunk/bridge/uberon-bridge-to-emapa.owl
uberon/trunk/bridge/uberon-bridge-to-fbbt.obo
uberon/trunk/bridge/uberon-bridge-to-fbbt.owl
uberon/trunk/bridge/uberon-bridge-to-fbdv.obo
uberon/trunk/bridge/uberon-bridge-to-fbdv.owl
uberon/trunk/bridge/uberon-bridge-to-fma.obo
uberon/trunk/bridge/uberon-bridge-to-fma.owl
uberon/trunk/bridge/uberon-bridge-to-go.obo
uberon/trunk/bridge/uberon-bridge-to-go.owl
uberon/trunk/bridge/uberon-bridge-to-hao.obo
uberon/trunk/bridge/uberon-bridge-to-hao.owl
uberon/trunk/bridge/uberon-bridge-to-hba.obo
uberon/trunk/bridge/uberon-bridge-to-hba.owl
uberon/trunk/bridge/uberon-bridge-to-ma.obo
uberon/trunk/bridge/uberon-bridge-to-ma.owl
uberon/trunk/bridge/uberon-bridge-to-mba.obo
uberon/trunk/bridge/uberon-bridge-to-mba.owl
uberon/trunk/bridge/uberon-bridge-to-mfo.obo
uberon/trunk/bridge/uberon-bridge-to-mfo.owl
uberon/trunk/bridge/uberon-bridge-to-og.obo
uberon/trunk/bridge/uberon-bridge-to-og.owl
uberon/trunk/bridge/uberon-bridge-to-pba.obo
uberon/trunk/bridge/uberon-bridge-to-pba.owl
uberon/trunk/bridge/uberon-bridge-to-sctid.obo
uberon/trunk/bridge/uberon-bridge-to-sctid.owl
uberon/trunk/bridge/uberon-bridge-to-spd.obo
uberon/trunk/bridge/uberon-bridge-to-spd.owl
uberon/trunk/bridge/uberon-bridge-to-tads.obo
uberon/trunk/bridge/uberon-bridge-to-tads.owl
uberon/trunk/bridge/uberon-bridge-to-tao.obo
uberon/trunk/bridge/uberon-bridge-to-tao.owl
uberon/trunk/bridge/uberon-bridge-to-tgma.obo
uberon/trunk/bridge/uberon-bridge-to-tgma.owl
uberon/trunk/bridge/uberon-bridge-to-vsao.obo
uberon/trunk/bridge/uberon-bridge-to-vsao.owl
uberon/trunk/bridge/uberon-bridge-to-wbbt.obo
uberon/trunk/bridge/uberon-bridge-to-wbbt.owl
uberon/trunk/bridge/uberon-bridge-to-wbls.obo
uberon/trunk/bridge/uberon-bridge-to-wbls.owl
uberon/trunk/bridge/uberon-bridge-to-xao.obo
uberon/trunk/bridge/uberon-bridge-to-xao.owl
uberon/trunk/bridge/uberon-bridge-to-zfa.obo
uberon/trunk/bridge/uberon-bridge-to-zfa.owl
uberon/trunk/bridge/uberon-bridge-to-zfs.obo
uberon/trunk/bridge/uberon-bridge-to-zfs.owl
uberon/trunk/cl_import.owl
uberon/trunk/composite-metazoan-basic.obo
uberon/trunk/composite-metazoan.obo
uberon/trunk/composite-metazoan.owl
uberon/trunk/composite-vertebrate.obo
uberon/trunk/composite-vertebrate.owl
uberon/trunk/core.obo
uberon/trunk/core.owl
uberon/trunk/diffs/uberon-diff.md
uberon/trunk/ext.obo
uberon/trunk/ext.owl
uberon/trunk/go_import.owl
uberon/trunk/merged.obo
uberon/trunk/merged.owl
uberon/trunk/ncbitaxon_import.owl
uberon/trunk/pato_import.owl
uberon/trunk/pr_import.owl
uberon/trunk/reports/stages-human-report.tsv
uberon/trunk/reports/stages-metazoan-report.tsv
uberon/trunk/reports/stages-mouse-report.tsv
uberon/trunk/reports/stages-xenopus-report.tsv
uberon/trunk/subsets/amniote-basic.obo
uberon/trunk/subsets/amniote-basic.owl
uberon/trunk/subsets/appendicular-minimal.obo
uberon/trunk/subsets/cumbo.obo
uberon/trunk/subsets/efo-slim.obo
uberon/trunk/subsets/efo-slim.owl
uberon/trunk/subsets/euarchontoglires-basic.obo
uberon/trunk/subsets/euarchontoglires-basic.owl
uberon/trunk/subsets/mouse-view.owl
uberon/trunk/subsets/musculoskeletal-minimal.obo
uberon/trunk/subsets/nervous-minimal.obo
uberon/trunk/subsets/reproductive-minimal.obo
uberon/trunk/subsets/uberon-with-isa-for-FMA-MA-ZFA.obo
uberon/trunk/uberon.obo
uberon/trunk/uberon.owl
Modified: uberon/trunk/basic.obo
===================================================================
--- uberon/trunk/basic.obo 2018-03-01 12:43:08 UTC (rev 5402)
+++ uberon/trunk/basic.obo 2018-03-14 01:52:15 UTC (rev 5403)
@@ -1,6 +1,6 @@
format-version: 1.2
-data-version: uberon/releases/2018-02-28/basic.owl
-date: 28:02:2018 20:16
+data-version: uberon/releases/2018-03-09/basic.owl
+date: 09:03:2018 19:04
saved-by: cjm
subsetdef: cumbo "CUMBO"
subsetdef: cyclostome_subset "cyclostome structures"
@@ -415,6 +415,7 @@
subset: uberon_slim
synonym: "PNS - somatic" EXACT []
synonym: "somatic nervous system, somatic division" EXACT [NIFSTD:nlx_anat_100301]
+synonym: "somatic part of peripheral nervous system" EXACT [UBERON:cjm]
synonym: "somatic peripheral nervous system" EXACT [NIFSTD:nlx_anat_100301]
xref: EFO:0000892
xref: FMA:9904
@@ -421,11 +422,8 @@
xref: http://en.wikipedia.org/wiki/Somatic_nervous_system
xref: MA:0002850
xref: MAT:0000099
-xref: MAT:0000342
xref: MIAA:0000099
-xref: MIAA:0000342
xref: nlx_anat:100301
-xref: WBbt:0005760
is_a: UBERON:0011216 {source="cjm"} ! organ system subdivision
relationship: part_of UBERON:0000010 ! peripheral nervous system
@@ -9211,7 +9209,7 @@
[Term]
id: UBERON:0000994
name: spermathecum
-def: "An organ of the female reproductive tract that functions to receive and store sperm from the male, and can sometimes be the site of fertilization when the oocytes are ready." [http://en.wikipedia.org/wiki/Spermatheca]
+def: "An organ of the female reproductive tract that functions to receive and store sperm from the male, and can sometimes be the site of fertilization when the oocytes are ready." [http://en.wikipedia.org/wiki/Spermatheca, https://github.com/obophenotype/uberon/issues/1405]
subset: dubious_grouping
subset: efo_slim
subset: uberon_slim
@@ -45339,12 +45337,12 @@
id: UBERON:0002376
name: cranial muscle
alt_id: UBERON:0003899
-def: "Any muscle that is part of the head region." [http://orcid.org/0000-0002-6601-2165]
+def: "Any skeletal muscle that is part of the head region." [http://orcid.org/0000-0002-6601-2165]
comment: defined generically so could in theory encompass FBbt:00003260 'skeletal muscle of head', or the muscle of a starfish Aristotle's lantern, but we restrict this to craniates. Skeletal muscles of the head originate from the non-segmented head mesoderm (Noden, 1983; Wachtler et al., 1984)
subset: efo_slim
subset: uberon_slim
subset: vertebrate_core
-synonym: "adult head muscle organ" EXACT [OBOL:automatic]
+synonym: "adult head muscle organ" NARROW [OBOL:automatic]
synonym: "cephalic muscle" EXACT [ZFA:0001652]
synonym: "cephalic musculature" EXACT []
synonym: "cranial muscle" RELATED [ZFA:0001652]
@@ -45367,7 +45365,7 @@
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0010959 ! craniocervical muscle
relationship: develops_from UBERON:0006904 {source="EHDAA2-abduced"} ! head mesenchyme from mesoderm
-relationship: part_of UBERON:0004461 {source="https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships"} ! musculature of head
+relationship: part_of UBERON:0004461 {source="https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships"} ! skeletal musculature of head
[Term]
id: UBERON:0002377
@@ -53484,7 +53482,7 @@
xref: EMAPA:35376
xref: EV:0100217
xref: FMA:62023
-xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=351
+xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=351 {source="NIFSTD:birnlex_1461"}
xref: http://en.wikipedia.org/wiki/Metathalamus
xref: http://www.snomedbrowser.com/Codes/Details/361550004
xref: MA:0000868
@@ -83382,8 +83380,9 @@
[Term]
id: UBERON:0004461
-name: musculature of head
-def: "Any collection of muscles that is part of a head [Automatically generated definition]." [OBOL:automatic]
+name: skeletal musculature of head
+def: "Any collection of skeletal muscles that is part of a head [Automatically generated definition]." [OBOL:automatic]
+comment: This class is restricted to skeletal muscles that attach to the cranial skeleton. This seems to be consistent with FMA and EMAPA usage. Note that by definition this excludes invertebrate head musculature. It corresponds to the individual muscle organ term UBERON:0002376
subset: non_informative
synonym: "head musculature" EXACT [FMA:71287]
synonym: "muscle group of head" EXACT [FMA:71287]
@@ -83393,8 +83392,6 @@
xref: EMAPA:18171
xref: FMA:71287
is_a: UBERON:0008229 ! craniocervical region musculature
-intersection_of: UBERON:0001015 ! musculature
-intersection_of: part_of UBERON:0000033 ! head
relationship: develops_from UBERON:0005253 ! head mesenchyme
relationship: part_of UBERON:0000033 ! head
relationship: part_of UBERON:0013700 ! axial musculature
@@ -83577,7 +83574,7 @@
synonym: "set of facial muscles" RELATED [FMA:71288]
synonym: "set of muscles of face" RELATED [FMA:71288]
xref: FMA:71288
-is_a: UBERON:0004461 ! musculature of head
+is_a: UBERON:0008229 ! craniocervical region musculature
intersection_of: UBERON:0001015 ! musculature
intersection_of: part_of UBERON:0001456 ! face
relationship: part_of UBERON:0001456 ! face
@@ -93168,7 +93165,7 @@
is_a: UBERON:0004120 ! mesoderm-derived structure
intersection_of: UBERON:0001285 ! nephron
intersection_of: part_of UBERON:0000081 ! metanephros
-relationship: develops_from UBERON:0003220 {source="http://en.wikipedia.org/wiki/Nephron"} ! metanephric mesenchyme
+relationship: develops_from UBERON:0003220 {source="Wikipedia"} ! metanephric mesenchyme
relationship: immediate_transformation_of UBERON:0010535 {source="Bgee:AN"} ! primitive metanephric nephron
relationship: part_of UBERON:0000081 ! metanephros
@@ -103412,7 +103409,7 @@
synonym: "crus 2 of the ansiform lobule" RELATED [NeuroNames:668]
synonym: "crus II" RELATED LATIN [NeuroNames:668]
synonym: "crus II of the ansiform lobule (HVII)" EXACT [NIFSTD:nlx_anat_20081209]
-synonym: "crus secundum lobuli ansiformis cerebelli [h vii a" EXACT LATIN [FMA:72525, FMA:TA]
+synonym: "crus secundum lobuli ansiformis cerebelli [hVII A]" EXACT LATIN [FMA:72525, FMA:TA]
synonym: "hemispheric lobule VIIBi" EXACT [NIFSTD:nlx_anat_20081209]
synonym: "inferior semilunar lobule" EXACT [FMA:72525]
synonym: "inferior semilunar lobule" RELATED [NeuroNames:668]
@@ -120152,7 +120149,7 @@
xref: http://www.snomedbrowser.com/Codes/Details/362666008
xref: MA:0000028
is_a: UBERON:0000475 ! organism subdivision
-relationship: part_of UBERON:0000915 {source="MA"} ! thoracic segment of trunk
+relationship: part_of UBERON:0000915 {source="FMA"} ! thoracic segment of trunk
relationship: part_of UBERON:0011270 {source="FMA"} ! dorsal trunk
[Term]
@@ -148641,7 +148638,8 @@
[Term]
id: UBERON:0013116
name: venom gland musculature
-is_a: UBERON:0004461 ! musculature of head
+is_a: UBERON:0008229 ! craniocervical region musculature
+relationship: part_of UBERON:0000033 ! head
[Term]
id: UBERON:0013118
@@ -210959,7 +210957,7 @@
id: UBERON:4100007
name: pectoral articular facet
namespace: none
-def: "Facet of scapulocoracoid with which the pectoral fin radial(s) articulates. Facet of scapulocoracoid with which the pectoral fin radial(s) articulates. Based on Goujet and Young (1995). [PHENOSCAPE: pm]" []
+def: "Facet of scapulocoracoid with which the pectoral fin radial(s) articulates. Facet of scapulocoracoid with which the pectoral fin radial(s) articulates. Based on Goujet and Young (1995). [PHENOSCAPE:pm]" []
comment: Should be part of some joint.
is_a: UBERON:4100003 ! articular surface
relationship: part_of UBERON:0004753 ! scapulocoracoid
@@ -211241,7 +211239,7 @@
namespace: none
def: "Joint that articulates left and right clavicles." []
synonym: "interclavicle joint" EXACT []
-xref: PHENOSCAPE: wd
+xref: PHENOSCAPE:wd
is_a: UBERON:0008114 ! joint of girdle
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0001105 ! clavicle bone
@@ -213162,7 +213160,7 @@
id: UBERON:4300006
name: scale row
namespace: none
-def: "A series of scales in alignment with each other along some axis of the body. [PHENOSCAPE: bf]." []
+def: "A series of scales in alignment with each other along some axis of the body. [PHENOSCAPE:bf]." []
is_a: UBERON:0000477 ! anatomical cluster
created_by: WD
@@ -214138,7 +214136,7 @@
[Term]
id: UBERON:4500002
name: upper uroneural
-def: "Uroneurals that form the uppermost three uroneural series that overlap, and lie at an angle to, longer anterior ones. [PHENOSCAPE: Patterson and Rosen 1977]" []
+def: "Uroneurals that form the uppermost three uroneural series that overlap, and lie at an angle to, longer anterior ones. [http://hdl.handle.net/2246/1224]" []
is_a: UBERON:2000602 ! uroneural
created_by: LJ
Modified: uberon/trunk/basic.owl
===================================================================
--- uberon/trunk/basic.owl 2018-03-01 12:43:08 UTC (rev 5402)
+++ uberon/trunk/basic.owl 2018-03-14 01:52:15 UTC (rev 5403)
@@ -17,11 +17,10 @@
xmlns:dc="http://purl.org/dc/elements/1.1/"
xmlns:insect-anatomy="http://purl.obolibrary.org/obo/uberon/insect-anatomy#">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/basic.owl">
- <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/releases/2018-02-28/basic.owl"/>
+ <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/releases/2018-03-09/basic.owl"/>
<dc:contributor rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Lydie Lane</dc:contributor>
<dc:contributor rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Paula Mabee</dc:contributor>
<doap:bug-database rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">https://github.com/obophenotype/uberon/issues/</doap:bug-database>
- <dc:creator rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Alex Decechi</dc:creator>
<dc:source rdf:resource="http://purl.obolibrary.org/obo/wbbt.owl"/>
<terms:isReferencedBy rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://www.ncbi.nlm.nih.gov/pubmed/22293552</terms:isReferencedBy>
<dc:contributor rdf:datatype="http://www.w3.org/2001/XMLSchema#string">George Gkoutos</dc:contributor>
@@ -136,6 +135,7 @@
<dc:source rdf:resource="http://purl.obolibrary.org/obo/go.owl"/>
<rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/uberon/insect-anatomy.owl>) VersionIRI(<null>))) [Axioms: 2098 Logical Axioms: 650]</rdfs:comment>
<oboInOwl:treat-xrefs-as-reverse-genus-differentia rdf:datatype="http://www.w3.org/2001/XMLSchema#string">MmusDv part_of NCBITaxon:10090</oboInOwl:treat-xrefs-as-reverse-genus-differentia>
+ <dc:creator rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Alex Dececchi</dc:creator>
<rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/uberon-bridge-to-bfo.owl>) VersionIRI(<null>))) [Axioms: 20 Logical Axioms: 9]</rdfs:comment>
<oboInOwl:treat-xrefs-as-reverse-genus-differentia rdf:datatype="http://www.w3.org/2001/XMLSchema#string">MBA part_of NCBITaxon:10090</oboInOwl:treat-xrefs-as-reverse-genus-differentia>
<oboInOwl:treat-xrefs-as-reverse-genus-differentia rdf:datatype="http://www.w3.org/2001/XMLSchema#string">TAO part_of NCBITaxon:32443</oboInOwl:treat-xrefs-as-reverse-genus-differentia>
@@ -3887,12 +3887,10 @@
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">FMA:9904</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">MA:0002850</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">MAT:0000099</oboInOwl:hasDbXref>
- <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">MAT:0000342</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">MIAA:0000099</oboInOwl:hasDbXref>
- <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">MIAA:0000342</oboInOwl:hasDbXref>
- <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">WBbt:0005760</oboInOwl:hasDbXref>
<oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PNS - somatic</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">somatic nervous system, somatic division</oboInOwl:hasExactSynonym>
+ <oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">somatic part of peripheral nervous system</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">somatic peripheral nervous system</oboInOwl:hasExactSynonym>
<oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">uberon</oboInOwl:hasOBONamespace>
<oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">UBERON:0000012</oboInOwl:id>
@@ -3921,6 +3919,12 @@
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000012"/>
<owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"/>
+ <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">somatic part of peripheral nervous system</owl:annotatedTarget>
+ <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">UBERON:cjm</oboInOwl:hasDbXref>
+ </owl:Axiom>
+ <owl:Axiom>
+ <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000012"/>
+ <owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"/>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">somatic peripheral nervous system</owl:annotatedTarget>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">NIFSTD:nlx_anat_100301</oboInOwl:hasDbXref>
</owl:Axiom>
@@ -12984,6 +12988,12 @@
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000165"/>
<owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym"/>
+ <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">rima oris</owl:annotatedTarget>
+ <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">BTO:0001090</oboInOwl:hasDbXref>
+ </owl:Axiom>
+ <owl:Axiom>
+ <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000165"/>
+ <owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym"/>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">stomatodaeum</owl:annotatedTarget>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">VHOG:0000812</oboInOwl:hasDbXref>
</owl:Axiom>
@@ -13094,12 +13104,6 @@
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">oral vestibule</owl:annotatedTarget>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">BTO:0001090</oboInOwl:hasDbXref>
</owl:Axiom>
- <owl:Axiom>
- <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000165"/>
- <owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym"/>
- <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">rima oris</owl:annotatedTarget>
- <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">BTO:0001090</oboInOwl:hasDbXref>
- </owl:Axiom>
@@ -32911,6 +32915,7 @@
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">An organ of the female reproductive tract that functions to receive and store sperm from the male, and can sometimes be the site of fertilization when the oocytes are ready.</owl:annotatedTarget>
<oboInOwl:hasDbXref rdf:resource="http://en.wikipedia.org/wiki/Spermatheca"/>
+ <oboInOwl:hasDbXref rdf:resource="https://github.com/obophenotype/uberon/issues/1405"/>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000994"/>
@@ -105938,6 +105943,16 @@
</owl:Class>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/UBERON_0001874"/>
+ <owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/UBPROP_0000003"/>
+ <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">All nuclei of the mammalian basal ganglia are also present in the oldest vertebrates.[well established][VHOG]</owl:annotatedTarget>
+ <oboInOwl:date_retrieved rdf:datatype="http://www.w3.org/2001/XMLSchema#string">2012-09-17</oboInOwl:date_retrieved>
+ <oboInOwl:external_class rdf:datatype="http://www.w3.org/2001/XMLSchema#string">VHOG:0001456</oboInOwl:external_class>
+ <oboInOwl:ontology rdf:datatype="http://www.w3.org/2001/XMLSchema#string">VHOG</oboInOwl:ontology>
+ <oboInOwl:source rdf:resource="http://bgee.unil.ch/"/>
+ <oboInOwl:source rdf:datatype="http://www.w3.org/2001/XMLSchema#string">DOI:10.1016/j.cub.2011.05.001 Stephenson-Jones M, Samuelsson E, Ericsson J, Robertson B, Grillner S, Evolutionary conservation of the basal ganglia as a common vertebrate mechanism for action selection. Current Biology (2011)</oboInOwl:source>
+ </owl:Axiom>
+ <owl:Axiom>
+ <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/UBERON_0001874"/>
<owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasDbXref"/>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">UMLS:C0034169</owl:annotatedTarget>
<oboInOwl:source rdf:datatype="http://www.w3.org/2001/XMLSchema#string">ncithesaurus:Putamen</oboInOwl:source>
@@ -105977,16 +105992,6 @@
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Nucleus of brain which lies ventral to the caudate nucleus and internal capsule and medial to the external capsule. The putamen and caudate nucleus together form the dorsal striatum. It is also one of the structures that comprises the basal ganglia. Through various pathways, the putamen is connected to the substantia nigra and globus pallidus. The main function of the putamen is to regulate movements and influence various types of learning. It employs dopamine to perform its functions. The putamen also plays a role in degenerative neurological disorders, such as Parkinson's disease[Wikipedia:Putamen].</owl:annotatedTarget>
<oboInOwl:source rdf:resource="http://en.wikipedia.org/wiki/Putamen"/>
</owl:Axiom>
- <owl:Axiom>
- <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/UBERON_0001874"/>
- <owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/UBPROP_0000003"/>
- <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">All nuclei of the mammalian basal ganglia are also present in the oldest vertebrates.[well established][VHOG]</owl:annotatedTarget>
- <oboInOwl:date_retrieved rdf:datatype="http://www.w3.org/2001/XMLSchema#string">2012-09-17</oboInOwl:date_retrieved>
- <oboInOwl:external_class rdf:datatype="http://www.w3.org/2001/XMLSchema#string">VHOG:0001456</oboInOwl:external_class>
- <oboInOwl:ontology rdf:datatype="http://www.w3.org/2001/XMLSchema#string">VHOG</oboInOwl:ontology>
- <oboInOwl:source rdf:resource="http://bgee.unil.ch/"/>
- <oboInOwl:source rdf:datatype="http://www.w3.org/2001/XMLSchema#string">DOI:10.1016/j.cub.2011.05.001 Stephenson-Jones M, Samuelsson E, Ericsson J, Robertson B, Grillner S, Evolutionary conservation of the basal ganglia as a common vertebrate mechanism for action selection. Current Biology (2011)</oboInOwl:source>
- </owl:Axiom>
@@ -155187,7 +155192,7 @@
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_0006904"/>
</owl:Restriction>
</rdfs:subClassOf>
- <obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Any muscle that is part of the head region.</obo:IAO_0000115>
+ <obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Any skeletal muscle that is part of the head region.</obo:IAO_0000115>
<oboInOwl:hasAlternativeId rdf:datatype="http://www.w3.org/2001/XMLSchema#string">UBERON:0003899</oboInOwl:hasAlternativeId>
<oboInOwl:hasDbXref rdf:resource="http://www.snomedbrowser.com/Codes/Details/244718003"/>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">AAO:0000107</oboInOwl:hasDbXref>
@@ -155198,7 +155203,6 @@
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">FMA:9616</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">MA:0000578</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">ZFA:0001652</oboInOwl:hasDbXref>
- <oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">adult head muscle organ</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">cephalic muscle</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">cephalic musculature</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">head muscle</oboInOwl:hasExactSynonym>
@@ -155207,6 +155211,7 @@
<oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">muscle organ of adult head</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">muscle organ of head</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">musculus caput</oboInOwl:hasExactSynonym>
+ <oboInOwl:hasNarrowSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">adult head muscle organ</oboInOwl:hasNarrowSynonym>
<oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">uberon</oboInOwl:hasOBONamespace>
<oboInOwl:hasRelatedSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">cranial muscle</oboInOwl:hasRelatedSynonym>
<oboInOwl:hasRelatedSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">head muscles</oboInOwl:hasRelatedSynonym>
@@ -155242,18 +155247,12 @@
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/UBERON_0002376"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
- <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Any muscle that is part of the head region.</owl:annotatedTarget>
+ <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Any skeletal muscle that is part of the head region.</owl:annotatedTarget>
<oboInOwl:hasDbXref rdf:resource="http://orcid.org/0000-0002-6601-2165"/>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/UBERON_0002376"/>
<owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"/>
- <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">adult head muscle organ</owl:annotatedTarget>
- <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">OBOL:automatic</oboInOwl:hasDbXref>
- </owl:Axiom>
- <owl:Axiom>
- <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/UBERON_0002376"/>
- <owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"/>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">cephalic muscle</owl:annotatedTarget>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">ZFA:0001652</oboInOwl:hasDbXref>
</owl:Axiom>
@@ -155289,6 +155288,12 @@
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/UBERON_0002376"/>
+ <owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym"/>
+ <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">adult head muscle organ</owl:annotatedTarget>
+ <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">OBOL:automatic</oboInOwl:hasDbXref>
+ </owl:Axiom>
+ <owl:Axiom>
+ <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/UBERON_0002376"/>
<owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym"/>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">cranial muscle</owl:annotatedTarget>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">ZFA:0001652</oboInOwl:hasDbXref>
@@ -310052,17 +310057,6 @@
<!-- http://purl.obolibrary.org/obo/UBERON_0004461 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0004461">
- <owl:equivalentClass>
- <owl:Class>
- <owl:intersectionOf rdf:parseType="Collection">
- <rdf:Description rdf:about="http://purl.obolibrary.org/obo/UBERON_0001015"/>
- <owl:Restriction>
- <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
- <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000033"/>
- </owl:Restriction>
- </owl:intersectionOf>
- </owl:Class>
- </owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0008229"/>
<rdfs:subClassOf>
<owl:Restriction>
@@ -310082,7 +310076,7 @@
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_0005253"/>
</owl:Restriction>
</rdfs:subClassOf>
- <obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Any collection of muscles that is part of a head [Automatically generated definition].</obo:IAO_0000115>
+ <obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Any collection of skeletal muscles that is part of a head [Automatically generated definition].</obo:IAO_0000115>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">EMAPA:18171</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">FMA:71287</oboInOwl:hasDbXref>
<oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">head musculature</oboInOwl:hasExactSynonym>
@@ -310093,13 +310087,15 @@
<oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">uberon</oboInOwl:hasOBONamespace>
<oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">UBERON:0004461</oboInOwl:id>
<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/uberon/core#non_informative"/>
- <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">musculature of head</rdfs:label>
+ <rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string">This class is restricted to skeletal muscles that attach to the cranial skeleton. This seems to be consistent with FMA and EMAPA usage. Note that by definition this excludes invertebrate head musculature. It corresponds to the individual muscle organ term UBERON:0002376</rdfs:comment>
+ <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">skeletal musculature of head</rdfs:label>
<rdfs:seeAlso rdf:resource="https://github.com/obophenotype/mouse-anatomy-ontology/issues/4"/>
+ <rdfs:seeAlso rdf:resource="https://github.com/obophenotype/uberon/issues/1405"/>
</owl:Class>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/UBERON_0004461"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
- <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Any collection of muscles that is part of a head [Automatically generated definition].</owl:annotatedTarget>
+ <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Any collection of skeletal muscles that is part of a head [Automatically generated definition].</owl:annotatedTarget>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">OBOL:automatic</oboInOwl:hasDbXref>
</owl:Axiom>
<owl:Axiom>
@@ -310813,7 +310809,7 @@
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
- <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0004461"/>
+ <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0008229"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
@@ -391410,7 +391406,7 @@
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">HBA:12939</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">MBA:1064</oboInOwl:hasDbXref>
<oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">crus II of the ansiform lobule (HVII)</oboInOwl:hasExactSynonym>
- <oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">crus secundum lobuli ansiformis cerebelli [h vii a</oboInOwl:hasExactSynonym>
+ <oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">crus secundum lobuli ansiformis cerebelli [hVII A]</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">hemispheric lobule VIIBi</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">inferior semilunar lobule</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">inferior semilunar lobule of cerebellum</oboInOwl:hasExactSynonym>
@@ -391462,7 +391458,7 @@
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/UBERON_0005977"/>
<owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"/>
- <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">crus secundum lobuli ansiformis cerebelli [h vii a</owl:annotatedTarget>
+ <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">crus secundum lobuli ansiformis cerebelli [hVII A]</owl:annotatedTarget>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">FMA:72525</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">FMA:TA</oboInOwl:hasDbXref>
<oboInOwl:hasSynonymType rdf:resource="http://purl.obolibrary.org/obo/uberon/core#LATIN"/>
@@ -567069,7 +567065,13 @@
<!-- http://purl.obolibrary.org/obo/UBERON_0013116 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0013116">
- <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0004461"/>
+ <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0008229"/>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
+ <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000033"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
<oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">uberon</oboInOwl:hasOBONamespace>
<oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">UBERON:0013116</oboInOwl:id>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">venom gland musculature</rdfs:label>
@@ -765816,7 +765818,7 @@
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_0004753"/>
</owl:Restriction>
</rdfs:subClassOf>
- <obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Facet of scapulocoracoid with which the pectoral fin radial(s) articulates. Facet of scapulocoracoid with which the pectoral fin radial(s) articulates. Based on Goujet and Young (1995). [PHENOSCAPE: pm]</obo:IAO_0000115>
+ <obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Facet of scapulocoracoid with which the pectoral fin radial(s) articulates. Facet of scapulocoracoid with which the pectoral fin radial(s) articulates. Based on Goujet and Young (1995). [PHENOSCAPE:pm]</obo:IAO_0000115>
<oboInOwl:created_by rdf:datatype="http://www.w3.org/2001/XMLSchema#string">NI</oboInOwl:created_by>
<oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">none</oboInOwl:hasOBONamespace>
<rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Should be part of some joint.</rdfs:comment>
@@ -766381,7 +766383,7 @@
</rdfs:subClassOf>
<obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Joint that articulates left and right clavicles.</obo:IAO_0000115>
<oboInOwl:created_by rdf:datatype="http://www.w3.org/2001/XMLSchema#string">AD</oboInOwl:created_by>
- <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PHENOSCAPE: wd</oboInOwl:hasDbXref>
+ <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PHENOSCAPE:wd</oboInOwl:hasDbXref>
<oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">interclavicle joint</oboInOwl:hasExactSynonym>
<oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">none</oboInOwl:hasOBONamespace>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">inter-clavicle joint</rdfs:label>
@@ -770050,7 +770052,7 @@
<owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_4300006">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000477"/>
- <obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A series of scales in alignment with each other along some axis of the body. [PHENOSCAPE: bf].</obo:IAO_0000115>
+ <obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A series of scales in alignment with each other along some axis of the body. [PHENOSCAPE:bf].</obo:IAO_0000115>
<oboInOwl:created_by rdf:datatype="http://www.w3.org/2001/XMLSchema#string">WD</oboInOwl:created_by>
<oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">none</oboInOwl:hasOBONamespace>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">scale row</rdfs:label>
@@ -771807,7 +771809,7 @@
<owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_4500002">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_2000602"/>
- <obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Uroneurals that form the uppermost three uroneural series that overlap, and lie at an angle to, longer anterior ones. [PHENOSCAPE: Patterson and Rosen 1977]</obo:IAO_0000115>
+ <obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Uroneurals that form the uppermost three uroneural series that overlap, and lie at an angle to, longer anterior ones. [http://hdl.handle.net/2246/1224]</obo:IAO_0000115>
<oboInOwl:created_by rdf:datatype="http://www.w3.org/2001/XMLSchema#string">LJ</oboInOwl:created_by>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">upper uroneural</rdfs:label>
</owl:Class>
Modified: uberon/trunk/bridge/uberon-bridge-to-aao.obo
===================================================================
--- uberon/trunk/bridge/uberon-bridge-to-aao.obo 2018-03-01 12:43:08 UTC (rev 5402)
+++ uberon/trunk/bridge/uberon-bridge-to-aao.obo 2018-03-14 01:52:15 UTC (rev 5403)
@@ -1,5 +1,5 @@
ontology: uberon/bridge/uberon-bridge-to-aao
-data-version: 2018-02-28
+data-version: 2018-03-09
property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI
property_value: dc-title "Uberon bridge to aao" xsd:string
property_value: dc-description "Equivalence axioms between AAO and Uberon. Note that AAO is in the process of being merged into the core Uberon, so this mapping will become deprecated" xsd:string
Modified: uberon/trunk/bridge/uberon-bridge-to-aao.owl
===================================================================
--- uberon/trunk/bridge/uberon-bridge-to-aao.owl 2018-03-01 12:43:08 UTC (rev 5402)
+++ uberon/trunk/bridge/uberon-bridge-to-aao.owl 2018-03-14 01:52:15 UTC (rev 5403)
@@ -13,7 +13,7 @@
xmlns:foaf="http://xmlns.com/foaf/0.1/"
xmlns:dc="http://purl.org/dc/elements/1.1/">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-aao.owl">
- <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-aao/2018-02-28/uberon/bridge/uberon-bridge-to-aao.owl"/>
+ <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-aao/2018-03-09/uberon/bridge/uberon-bridge-to-aao.owl"/>
<terms:references rdf:resource="http://purl.obolibrary.org/obo/aao.owl"/>
<rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://purl.obolibrary.org/obo/uberon/references/reference_0000026</rdfs:seeAlso>
<dc:contributor rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Paula Mabee</dc:contributor>
Modified: uberon/trunk/bridge/uberon-bridge-to-aeo.obo
===================================================================
--- uberon/trunk/bridge/uberon-bridge-to-aeo.obo 2018-03-01 12:43:08 UTC (rev 5402)
+++ uberon/trunk/bridge/uberon-bridge-to-aeo.obo 2018-03-14 01:52:15 UTC (rev 5403)
@@ -1,5 +1,5 @@
ontology: uberon/bridge/uberon-bridge-to-aeo
-data-version: 2018-02-28
+data-version: 2018-03-09
property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI
[Term]
Modified: uberon/trunk/bridge/uberon-bridge-to-aeo.owl
===================================================================
--- uberon/trunk/bridge/uberon-bridge-to-aeo.owl 2018-03-01 12:43:08 UTC (rev 5402)
+++ uberon/trunk/bridge/uberon-bridge-to-aeo.owl 2018-03-14 01:52:15 UTC (rev 5403)
@@ -13,7 +13,7 @@
xmlns:foaf="http://xmlns.com/foaf/0.1/"
xmlns:dc="http://purl.org/dc/elements/1.1/">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-aeo.owl">
- <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-aeo/2018-02-28/uberon/bridge/uberon-bridge-to-aeo.owl"/>
+ <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-aeo/2018-03-09/uberon/bridge/uberon-bridge-to-aeo.owl"/>
<rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://purl.obolibrary.org/obo/uberon/references/reference_0000026</rdfs:seeAlso>
</owl:Ontology>
Modified: uberon/trunk/bridge/uberon-bridge-to-bila.obo
===================================================================
--- uberon/trunk/bridge/uberon-bridge-to-bila.obo 2018-03-01 12:43:08 UTC (rev 5402)
+++ uberon/trunk/bridge/uberon-bridge-to-bila.obo 2018-03-14 01:52:15 UTC (rev 5403)
@@ -1,5 +1,5 @@
ontology: uberon/bridge/uberon-bridge-to-bila
-data-version: 2018-02-28
+data-version: 2018-03-09
property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI
[Term]
Modified: uberon/trunk/bridge/uberon-bridge-to-bila.owl
===================================================================
--- uberon/trunk/bridge/uberon-bridge-to-bila.owl 2018-03-01 12:43:08 UTC (rev 5402)
+++ uberon/trunk/bridge/uberon-bridge-to-bila.owl 2018-03-14 01:52:15 UTC (rev 5403)
@@ -13,7 +13,7 @@
xmlns:foaf="http://xmlns.com/foaf/0.1/"
xmlns:dc="http://purl.org/dc/elements/1.1/">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-bila.owl">
- <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-bila/2018-02-28/uberon/bridge/uberon-bridge-to-bila.owl"/>
+ <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-bila/2018-03-09/uberon/bridge/uberon-bridge-to-bila.owl"/>
<rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://purl.obolibrary.org/obo/uberon/references/reference_0000026</rdfs:seeAlso>
</owl:Ontology>
Modified: uberon/trunk/bridge/uberon-bridge-to-caro.obo
===================================================================
--- uberon/trunk/bridge/uberon-bridge-to-caro.obo 2018-03-01 12:43:08 UTC (rev 5402)
+++ uberon/trunk/bridge/uberon-bridge-to-caro.obo 2018-03-14 01:52:15 UTC (rev 5403)
@@ -1,5 +1,5 @@
ontology: uberon/bridge/uberon-bridge-to-caro
-data-version: 2018-02-28
+data-version: 2018-03-09
property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI
[Term]
Modified: uberon/trunk/bridge/uberon-bridge-to-caro.owl
===================================================================
--- uberon/trunk/bridge/uberon-bridge-to-caro.owl 2018-03-01 12:43:08 UTC (rev 5402)
+++ uberon/trunk/bridge/uberon-bridge-to-caro.owl 2018-03-14 01:52:15 UTC (rev 5403)
@@ -13,7 +13,7 @@
xmlns:foaf="http://xmlns.com/foaf/0.1/"
xmlns:dc="http://purl.org/dc/elements/1.1/">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-caro.owl">
- <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-caro/2018-02-28/uberon/bridge/uberon-bridge-to-caro.owl"/>
+ <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-caro/2018-03-09/uberon/bridge/uberon-bridge-to-caro.owl"/>
<rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://purl.obolibrary.org/obo/uberon/references/reference_0000026</rdfs:seeAlso>
</owl:Ontology>
Modified: uberon/trunk/bridge/uberon-bridge-to-dhba.obo
===================================================================
--- uberon/trunk/bridge/uberon-bridge-to-dhba.obo 2018-03-01 12:43:08 UTC (rev 5402)
+++ uberon/trunk/bridge/uberon-bridge-to-dhba.obo 2018-03-14 01:52:15 UTC (rev 5403)
@@ -1,5 +1,5 @@
ontology: uberon/bridge/uberon-bridge-to-dhba
-data-version: 2018-02-28
+data-version: 2018-03-09
property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI
[Term]
Modified: uberon/trunk/bridge/uberon-bridge-to-dhba.owl
===================================================================
--- uberon/trunk/bridge/uberon-bridge-to-dhba.owl 2018-03-01 12:43:08 UTC (rev 5402)
+++ uberon/trunk/bridge/uberon-bridge-to-dhba.owl 2018-03-14 01:52:15 UTC (rev 5403)
@@ -13,7 +13,7 @@
xmlns:foaf="http://xmlns.com/foaf/0.1/"
xmlns:dc="http://purl.org/dc/elements/1.1/">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-dhba.owl">
- <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-dhba/2018-02-28/uberon/bridge/uberon-bridge-to-dhba.owl"/>
+ <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-dhba/2018-03-09/uberon/bridge/uberon-bridge-to-dhba.owl"/>
<rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://purl.obolibrary.org/obo/uberon/references/reference_0000026</rdfs:seeAlso>
</owl:Ontology>
Modified: uberon/trunk/bridge/uberon-bridge-to-dmba.obo
===================================================================
--- uberon/trunk/bridge/uberon-bridge-to-dmba.obo 2018-03-01 12:43:08 UTC (rev 5402)
+++ uberon/trunk/bridge/uberon-bridge-to-dmba.obo 2018-03-14 01:52:15 UTC (rev 5403)
@@ -1,5 +1,5 @@
ontology: uberon/bridge/uberon-bridge-to-dmba
-data-version: 2018-02-28
+data-version: 2018-03-09
property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI
[Term]
Modified: uberon/trunk/bridge/uberon-bridge-to-dmba.owl
===================================================================
--- uberon/trunk/bridge/uberon-bridge-to-dmba.owl 2018-03-01 12:43:08 UTC (rev 5402)
+++ uberon/trunk/bridge/uberon-bridge-to-dmba.owl 2018-03-14 01:52:15 UTC (rev 5403)
@@ -13,7 +13,7 @@
xmlns:foaf="http://xmlns.com/foaf/0.1/"
xmlns:dc="http://purl.org/dc/elements/1.1/">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-dmba.owl">
- <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-dmba/2018-02-28/uberon/bridge/uberon-bridge-to-dmba.owl"/>
+ <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-dmba/2018-03-09/uberon/bridge/uberon-bridge-to-dmba.owl"/>
<rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://purl.obolibrary.org/obo/uberon/references/reference_0000026</rdfs:seeAlso>
</owl:Ontology>
Modified: uberon/trunk/bridge/uberon-bridge-to-efo.obo
===================================================================
--- uberon/trunk/bridge/uberon-bridge-to-efo.obo 2018-03-01 12:43:08 UTC (rev 5402)
+++ uberon/trunk/bridge/uberon-bridge-to-efo.obo 2018-03-14 01:52:15 UTC (rev 5403)
@@ -1,5 +1,5 @@
ontology: uberon/bridge/uberon-bridge-to-efo
-data-version: 2018-02-28
+data-version: 2018-03-09
property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI
[Term]
Modified: uberon/trunk/bridge/uberon-bridge-to-efo.owl
===================================================================
--- uberon/trunk/bridge/uberon-bridge-to-efo.owl 2018-03-01 12:43:08 UTC (rev 5402)
+++ uberon/trunk/bridge/uberon-bridge-to-efo.owl 2018-03-14 01:52:15 UTC (rev 5403)
@@ -13,7 +13,7 @@
xmlns:foaf="http://xmlns.com/foaf/0.1/"
xmlns:dc="http://purl.org/dc/elements/1.1/">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-efo.owl">
- <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-efo/2018-02-28/uberon/bridge/uberon-bridge-to-efo.owl"/>
+ <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-efo/2018-03-09/uberon/bridge/uberon-bridge-to-efo.owl"/>
<rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://purl.obolibrary.org/obo/uberon/references/reference_0000026</rdfs:seeAlso>
</owl:Ontology>
Modified: uberon/trunk/bridge/uberon-bridge-to-ehdaa.obo
===================================================================
--- uberon/trunk/bridge/uberon-bridge-to-ehdaa.obo 2018-03-01 12:43:08 UTC (rev 5402)
+++ uberon/trunk/bridge/uberon-bridge-to-ehdaa.obo 2018-03-14 01:52:15 UTC (rev 5403)
@@ -1,5 +1,5 @@
ontology: uberon/bridge/uberon-bridge-to-ehdaa
-data-version: 2018-02-28
+data-version: 2018-03-09
property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI
[Term]
Modified: uberon/trunk/bridge/uberon-bridge-to-ehdaa.owl
===================================================================
--- uberon/trunk/bridge/uberon-bridge-to-ehdaa.owl 2018-03-01 12:43:08 UTC (rev 5402)
+++ uberon/trunk/bridge/uberon-bridge-to-ehdaa.owl 2018-03-14 01:52:15 UTC (rev 5403)
@@ -13,7 +13,7 @@
xmlns:foaf="http://xmlns.com/foaf/0.1/"
xmlns:dc="http://purl.org/dc/elements/1.1/">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-ehdaa.owl">
- <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-ehdaa/2018-02-28/uberon/bridge/uberon-bridge-to-ehdaa.owl"/>
+ <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-ehdaa/2018-03-09/uberon/bridge/uberon-bridge-to-ehdaa.owl"/>
<rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://purl.obolibrary.org/obo/uberon/references/reference_0000026</rdfs:seeAlso>
</owl:Ontology>
Modified: uberon/trunk/bridge/uberon-bridge-to-ehdaa2.obo
===================================================================
--- uberon/trunk/bridge/uberon-bridge-to-ehdaa2.obo 2018-03-01 12:43:08 UTC (rev 5402)
+++ uberon/trunk/bridge/uberon-bridge-to-ehdaa2.obo 2018-03-14 01:52:15 UTC (rev 5403)
@@ -1,5 +1,5 @@
ontology: uberon/bridge/uberon-bridge-to-ehdaa2
-data-version: 2018-02-28
+data-version: 2018-03-09
property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI
property_value: dc-title "Uberon bridge to ehdaa2" xsd:string
property_value: dc-description "Equivalence axioms between EHDAA2 and Uberon. EHDAA2 replaces EHDAA" xsd:string
Modified: uberon/trunk/bridge/uberon-bridge-to-ehdaa2.owl
===================================================================
--- uberon/trunk/bridge/uberon-bridge-to-ehdaa2.owl 2018-03-01 12:43:08 UTC (rev 5402)
+++ uberon/trunk/bridge/uberon-bridge-to-ehdaa2.owl 2018-03-14 01:52:15 UTC (rev 5403)
@@ -13,7 +13,7 @@
xmlns:foaf="http://xmlns.com/foaf/0.1/"
xmlns:dc="http://purl.org/dc/elements/1.1/">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-ehdaa2.owl">
- <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-ehdaa2/2018-02-28/uberon/bridge/uberon-bridge-to-ehdaa2.owl"/>
+ <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-ehdaa2/2018-03-09/uberon/bridge/uberon-bridge-to-ehdaa2.owl"/>
<dc:contributor rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Jonathan Bard</dc:contributor>
<rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://purl.obolibrary.org/obo/uberon/references/reference_0000026</rdfs:seeAlso>
<terms:references rdf:resource="http://purl.obolibrary.org/obo/uberon.owl"/>
Modified: uberon/trunk/bridge/uberon-bridge-to-emapa.obo
===================================================================
--- uberon/trunk/bridge/uberon-bridge-to-emapa.obo 2018-03-01 12:43:08 UTC (rev 5402)
+++ uberon/trunk/bridge/uberon-bridge-to-emapa.obo 2018-03-14 01:52:15 UTC (rev 5403)
@@ -1,5 +1,5 @@
ontology: uberon/bridge/uberon-bridge-to-emapa
-data-version: 2018-02-28
+data-version: 2018-03-09
property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI
property_value: dc-title "Uberon bridge to emapa" xsd:string
property_value: dc-description "Taxonomic equivalence axioms between EMAPA (abstract developmental mouse) and Uberon" xsd:string
@@ -11892,8 +11892,8 @@
[Term]
id: EMAPA:18171 !
-property_value: IAO:0000589 "musculature of head (embryonic mouse)" xsd:string
-intersection_of: UBERON:0004461 ! musculature of head
+property_value: IAO:0000589 "skeletal musculature of head (embryonic mouse)" xsd:string
+intersection_of: UBERON:0004461 ! skeletal musculature of head
intersection_of: part_of NCBITaxon:10090
[Term]
Modified: uberon/trunk/bridge/uberon-bridge-to-emapa.owl
===================================================================
--- uberon/trunk/bridge/uberon-bridge-to-emapa.owl 2018-03-01 12:43:08 UTC (rev 5402)
+++ uberon/trunk/bridge/uberon-bridge-to-emapa.owl 2018-03-14 01:52:15 UTC (rev 5403)
@@ -13,7 +13,7 @@
xmlns:foaf="http://xmlns.com/foaf/0.1/"
xmlns:dc="http://purl.org/dc/elements/1.1/">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-emapa.owl">
- <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-emapa/2018-02-28/uberon/bridge/uberon-bridge-to-emapa.owl"/>
+ <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-emapa/2018-03-09/uberon/bridge/uberon-bridge-to-emapa.owl"/>
<dc:creator rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Aurelie Comte</dc:creator>
<dc:creator rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Anne Niknejad</dc:creator>
<terms:references rdf:resource="http://purl.obolibrary.org/obo/fma.owl"/>
@@ -24268,7 +24268,7 @@
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
- <obo:IAO_0000589 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">musculature of head (embryonic mouse)</obo:IAO_0000589>
+ <obo:IAO_0000589 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">skeletal musculature of head (embryonic mouse)</obo:IAO_0000589>
<oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">EMAPA:18171</oboInOwl:id>
</owl:Class>
Modified: uberon/trunk/bridge/uberon-bridge-to-fbbt.obo
===================================================================
--- uberon/trunk/bridge/uberon-bridge-to-fbbt.obo 2018-03-01 12:43:08 UTC (rev 5402)
+++ uberon/trunk/bridge/uberon-bridge-to-fbbt.obo 2018-03-14 01:52:15 UTC (rev 5403)
@@ -1,5 +1,5 @@
ontology: uberon/bridge/uberon-bridge-to-fbbt
-data-version: 2018-02-28
+data-version: 2018-03-09
property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI
property_value: dc-title "Uberon bridge to fbbt" xsd:string
property_value: dc-description "Taxonomic equivalence axioms between the drosophila anatomy ontology and Uberon. Note that currently Uberon focuses on chordate anatomy so there are only a minimal set of equivalencies for high level classes. In future Uberon may bridge via the arthropod anatomy ontology" xsd:string
Modified: uberon/trunk/bridge/uberon-bridge-to-fbbt.owl
===================================================================
--- uberon/trunk/bridge/uberon-bridge-to-fbbt.owl 2018-03-01 12:43:08 UTC (rev 5402)
+++ uberon/trunk/bridge/uberon-bridge-to-fbbt.owl 2018-03-14 01:52:15 UTC (rev 5403)
@@ -13,7 +13,7 @@
xmlns:foaf="http://xmlns.com/foaf/0.1/"
xmlns:dc="http://purl.org/dc/elements/1.1/">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/bridge/uberon-b...
[truncated message content] |
|
From: <cmu...@us...> - 2018-03-01 12:43:09
|
Revision: 5402
http://sourceforge.net/p/obo/svn/5402
Author: cmungall
Date: 2018-03-01 12:43:08 +0000 (Thu, 01 Mar 2018)
Log Message:
-----------
new-release
Added Paths:
-----------
uberon/releases/2018-02-28/
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <cmu...@us...> - 2018-03-01 04:41:21
|
Revision: 5401
http://sourceforge.net/p/obo/svn/5401
Author: cmungall
Date: 2018-03-01 04:26:36 +0000 (Thu, 01 Mar 2018)
Log Message:
-----------
new release
Modified Paths:
--------------
uberon/trunk/basic.obo
uberon/trunk/basic.owl
uberon/trunk/bridge/uberon-bridge-to-aao.obo
uberon/trunk/bridge/uberon-bridge-to-aao.owl
uberon/trunk/bridge/uberon-bridge-to-aeo.obo
uberon/trunk/bridge/uberon-bridge-to-aeo.owl
uberon/trunk/bridge/uberon-bridge-to-bila.obo
uberon/trunk/bridge/uberon-bridge-to-bila.owl
uberon/trunk/bridge/uberon-bridge-to-caro.obo
uberon/trunk/bridge/uberon-bridge-to-caro.owl
uberon/trunk/bridge/uberon-bridge-to-dhba.obo
uberon/trunk/bridge/uberon-bridge-to-dhba.owl
uberon/trunk/bridge/uberon-bridge-to-dmba.obo
uberon/trunk/bridge/uberon-bridge-to-dmba.owl
uberon/trunk/bridge/uberon-bridge-to-efo.obo
uberon/trunk/bridge/uberon-bridge-to-efo.owl
uberon/trunk/bridge/uberon-bridge-to-ehdaa.obo
uberon/trunk/bridge/uberon-bridge-to-ehdaa.owl
uberon/trunk/bridge/uberon-bridge-to-ehdaa2.obo
uberon/trunk/bridge/uberon-bridge-to-ehdaa2.owl
uberon/trunk/bridge/uberon-bridge-to-emapa.obo
uberon/trunk/bridge/uberon-bridge-to-emapa.owl
uberon/trunk/bridge/uberon-bridge-to-fbbt.obo
uberon/trunk/bridge/uberon-bridge-to-fbbt.owl
uberon/trunk/bridge/uberon-bridge-to-fbdv.obo
uberon/trunk/bridge/uberon-bridge-to-fbdv.owl
uberon/trunk/bridge/uberon-bridge-to-fma.obo
uberon/trunk/bridge/uberon-bridge-to-fma.owl
uberon/trunk/bridge/uberon-bridge-to-go.obo
uberon/trunk/bridge/uberon-bridge-to-go.owl
uberon/trunk/bridge/uberon-bridge-to-hao.obo
uberon/trunk/bridge/uberon-bridge-to-hao.owl
uberon/trunk/bridge/uberon-bridge-to-hba.obo
uberon/trunk/bridge/uberon-bridge-to-hba.owl
uberon/trunk/bridge/uberon-bridge-to-ma.obo
uberon/trunk/bridge/uberon-bridge-to-ma.owl
uberon/trunk/bridge/uberon-bridge-to-mba.obo
uberon/trunk/bridge/uberon-bridge-to-mba.owl
uberon/trunk/bridge/uberon-bridge-to-mfo.obo
uberon/trunk/bridge/uberon-bridge-to-mfo.owl
uberon/trunk/bridge/uberon-bridge-to-nifstd.owl
uberon/trunk/bridge/uberon-bridge-to-og.obo
uberon/trunk/bridge/uberon-bridge-to-og.owl
uberon/trunk/bridge/uberon-bridge-to-pba.obo
uberon/trunk/bridge/uberon-bridge-to-pba.owl
uberon/trunk/bridge/uberon-bridge-to-sctid.obo
uberon/trunk/bridge/uberon-bridge-to-sctid.owl
uberon/trunk/bridge/uberon-bridge-to-spd.obo
uberon/trunk/bridge/uberon-bridge-to-spd.owl
uberon/trunk/bridge/uberon-bridge-to-tads.obo
uberon/trunk/bridge/uberon-bridge-to-tads.owl
uberon/trunk/bridge/uberon-bridge-to-tao.obo
uberon/trunk/bridge/uberon-bridge-to-tao.owl
uberon/trunk/bridge/uberon-bridge-to-tgma.obo
uberon/trunk/bridge/uberon-bridge-to-tgma.owl
uberon/trunk/bridge/uberon-bridge-to-vhog.owl
uberon/trunk/bridge/uberon-bridge-to-vsao.obo
uberon/trunk/bridge/uberon-bridge-to-vsao.owl
uberon/trunk/bridge/uberon-bridge-to-wbbt.obo
uberon/trunk/bridge/uberon-bridge-to-wbbt.owl
uberon/trunk/bridge/uberon-bridge-to-wbls.obo
uberon/trunk/bridge/uberon-bridge-to-wbls.owl
uberon/trunk/bridge/uberon-bridge-to-xao.obo
uberon/trunk/bridge/uberon-bridge-to-xao.owl
uberon/trunk/bridge/uberon-bridge-to-zfa.obo
uberon/trunk/bridge/uberon-bridge-to-zfa.owl
uberon/trunk/bridge/uberon-bridge-to-zfs.obo
uberon/trunk/bridge/uberon-bridge-to-zfs.owl
uberon/trunk/chebi_import.owl
uberon/trunk/cl_import.owl
uberon/trunk/composite-metazoan-basic.obo
uberon/trunk/composite-metazoan.obo
uberon/trunk/composite-metazoan.owl
uberon/trunk/composite-vertebrate.obo
uberon/trunk/composite-vertebrate.owl
uberon/trunk/core.obo
uberon/trunk/core.owl
uberon/trunk/depictions.owl
uberon/trunk/diffs/uberon-diff.md
uberon/trunk/ext.obo
uberon/trunk/ext.owl
uberon/trunk/go_import.owl
uberon/trunk/merged.obo
uberon/trunk/merged.owl
uberon/trunk/ncbitaxon_import.owl
uberon/trunk/pato_import.owl
uberon/trunk/pr_import.owl
uberon/trunk/reports/stages-human-report.tsv
uberon/trunk/reports/stages-metazoan-report.tsv
uberon/trunk/reports/stages-mouse-report.tsv
uberon/trunk/reports/stages-xenopus-report.tsv
uberon/trunk/ro_import.owl
uberon/trunk/subsets/amniote-basic.obo
uberon/trunk/subsets/amniote-basic.owl
uberon/trunk/subsets/appendicular-minimal.obo
uberon/trunk/subsets/circulatory-minimal.obo
uberon/trunk/subsets/cranial-minimal.obo
uberon/trunk/subsets/cumbo.obo
uberon/trunk/subsets/cumbo.owl
uberon/trunk/subsets/digestive-minimal.obo
uberon/trunk/subsets/efo-slim.obo
uberon/trunk/subsets/efo-slim.owl
uberon/trunk/subsets/euarchontoglires-basic.obo
uberon/trunk/subsets/euarchontoglires-basic.owl
uberon/trunk/subsets/excretory-minimal.obo
uberon/trunk/subsets/life-stages-composite.obo
uberon/trunk/subsets/life-stages-core.obo
uberon/trunk/subsets/life-stages-core.owl
uberon/trunk/subsets/mouse-view.owl
uberon/trunk/subsets/musculoskeletal-minimal.obo
uberon/trunk/subsets/nervous-minimal.obo
uberon/trunk/subsets/pulmonary-minimal.obo
uberon/trunk/subsets/reproductive-minimal.obo
uberon/trunk/subsets/sensory-minimal.obo
uberon/trunk/subsets/uberon-with-isa-for-FMA-MA-ZFA.obo
uberon/trunk/uberon.obo
uberon/trunk/uberon.owl
Modified: uberon/trunk/basic.obo
===================================================================
--- uberon/trunk/basic.obo 2017-12-02 02:18:09 UTC (rev 5400)
+++ uberon/trunk/basic.obo 2018-03-01 04:26:36 UTC (rev 5401)
@@ -1,6 +1,6 @@
format-version: 1.2
-data-version: uberon/releases/2017-12-01/basic.owl
-date: 01:12:2017 14:10
+data-version: uberon/releases/2018-02-28/basic.owl
+date: 28:02:2018 20:16
saved-by: cjm
subsetdef: cumbo "CUMBO"
subsetdef: cyclostome_subset "cyclostome structures"
@@ -46,7 +46,7 @@
default-namespace: uberon
remark: Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/TEMP>) VersionIRI(<null>))) [Axioms: 437 Logical Axioms: 0]
remark: Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/uberon-bridge-to-bfo.owl>) VersionIRI(<null>))) [Axioms: 20 Logical Axioms: 9]
-remark: Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/uberon/ext.owl>) VersionIRI(<null>))) [Axioms: 25837 Logical Axioms: 4725]
+remark: Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/uberon/ext.owl>) VersionIRI(<null>))) [Axioms: 25885 Logical Axioms: 4732]
remark: Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/uberon/insect-anatomy.owl>) VersionIRI(<null>))) [Axioms: 2098 Logical Axioms: 650]
remark: Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/uberon/reflexivity_axioms.owl>) VersionIRI(<null>))) [Axioms: 2 Logical Axioms: 2]
treat-xrefs-as-equivalent: AEO
@@ -276,7 +276,7 @@
xref: FMA:13889
xref: GAID:457
xref: HBA:4634
-xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=399 {source="NIFSTD:birnlex_1353"}
+xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=399
xref: http://linkedlifedata.com/resource/umls/id/C0032005
xref: http://www.snomedbrowser.com/Codes/Details/181125003
xref: MA:0000176
@@ -287,7 +287,7 @@
xref: OpenCyc:Mx4rv6NQYJwpEbGdrcN5Y29ycA
xref: Pituitary:gland
xref: TAO:0000118
-xref: UMLS:C0032005 {source="NIFSTD:birnlex_1353"}
+xref: UMLS:C0032005 {source="ncithesaurus:Pituitary_Gland"}
xref: VHOG:0000143
xref: XAO:0000017
xref: ZFA:0000118
@@ -620,7 +620,7 @@
xref: NCIT:C12401
xref: OpenCyc:Mx8Ngx4rwKSh9pwpEbGdrcN5Y29ycB4rvVil5pwpEbGdrcN5Y29ycB4rvViTvpwpEbGdrcN5Y29ycA
xref: TAO:0000107
-xref: UMLS:C0015392 {source="ncithesaurus:Eye"}
+xref: UMLS:C0015392 {source="NIFSTD:birnlex_1169"}
xref: UMLS:C1280202 {source="NIFSTD:birnlex_1169"}
xref: VHOG:0000275
xref: XAO:0000179
@@ -906,8 +906,8 @@
def: "An ovarian follicle that has one layer of granulosa cells." [GO:0001545, GOC:mtg_mpo, http://ovary.stanford.edu]
subset: pheno_slim
synonym: "folliculus ovaricus primarius" EXACT LATIN [FMA:18634]
+synonym: "ovary primary follicle" EXACT [EMAPA:35631]
synonym: "ovary primary follicle" EXACT [MA:0002907]
-synonym: "ovary primary follicle" EXACT [EMAPA:35631]
synonym: "preantral follicle of ovary" RELATED []
synonym: "primary egg follicle" RELATED []
synonym: "primary follicle" RELATED [EMAPA:35631]
@@ -1104,8 +1104,8 @@
synonym: "dorsal root ganglion" EXACT [BTO:0001264]
synonym: "DRG" RELATED ABBREVIATION []
synonym: "ganglion of dorsal root" EXACT [OBOL:automatic]
+synonym: "ganglion sensorium nervi spinalis" RELATED LATIN [http://en.wikipedia.org/wiki/Dorsal_root_ganglion]
synonym: "ganglion sensorium nervi spinalis" RELATED [BTO:0001264]
-synonym: "ganglion sensorium nervi spinalis" RELATED LATIN [http://en.wikipedia.org/wiki/Dorsal_root_ganglion]
synonym: "ganglion spinale" RELATED [BTO:0001264]
synonym: "ganglion spinalis" EXACT [FMA:5888]
synonym: "posterior root ganglion" RELATED [EMAPA:16668]
@@ -2412,7 +2412,6 @@
xref: BILS:0000106
xref: EFO:0001322
xref: EHDAA:27
-xref: EMAPA:16033
xref: FBdv:00005288
xref: HsapDv:0000001
xref: http://en.wikipedia.org/wiki/Zygote
@@ -2607,7 +2606,8 @@
id: UBERON:0000117
name: respiratory tube
def: "A tube in the respiratory system. Examples: bronchus, bronchiole, trachea." [GO:0030323, http://orcid.org/0000-0002-6601-2165]
-synonym: "respiratory conducting tube" NARROW []
+synonym: "airway" RELATED []
+synonym: "respiratory conducting tube" NARROW [MP:0004391]
synonym: "segment of tracheobronchial tree" EXACT [FMA:12224]
synonym: "segment of tracheobronchial tree" NARROW [FMA:12224]
synonym: "tracheobronchial tree segment" NARROW [FMA:12224]
@@ -2930,8 +2930,8 @@
synonym: "ovary theca externa" EXACT [MA:0001713]
synonym: "theca externa (folliculus ovaricus tertiarius)" EXACT [FMA:18657]
synonym: "tunica externa of theca folliculi" EXACT [FMA:18657]
+synonym: "tunica externa thecae folliculi" RELATED [BTO:0002852]
synonym: "tunica externa thecae folliculi" RELATED LATIN [http://en.wikipedia.org/wiki/Theca_externa]
-synonym: "tunica externa thecae folliculi" RELATED [BTO:0002852]
xref: BTO:0002852
xref: FMA:18657
xref: http://www.snomedbrowser.com/Codes/Details/258767003
@@ -4155,8 +4155,8 @@
name: ileal mucosa
def: "A mucosa that is part of a ileum [Automatically generated definition]." [OBOL:automatic]
synonym: "ileal mucous membrane" EXACT [FMA:14956]
+synonym: "ileum mucosa" EXACT [OBOL:automatic]
synonym: "ileum mucosa" EXACT [FMA:14956]
-synonym: "ileum mucosa" EXACT [OBOL:automatic]
synonym: "ileum mucosa of organ" EXACT [OBOL:automatic]
synonym: "ileum mucous membrane" EXACT [OBOL:automatic]
synonym: "ileum organ mucosa" EXACT [OBOL:automatic]
@@ -4265,8 +4265,8 @@
synonym: "mucous membrane" EXACT [FMA:85355]
synonym: "organ mucosa" EXACT [FMA:85355]
synonym: "region of mucosa" RELATED [FMA:85358]
+synonym: "tunica mucosa" RELATED LATIN [http://en.wikipedia.org/wiki/Mucous_membrane]
synonym: "tunica mucosa" RELATED [BTO:0000886]
-synonym: "tunica mucosa" RELATED LATIN [http://en.wikipedia.org/wiki/Mucous_membrane]
xref: AEO:0000199
xref: BTO:0000886
xref: CALOHA:TS-2031
@@ -4455,8 +4455,8 @@
def: "A mucosa that is part of a pharynx [Automatically generated definition]." [OBOL:automatic]
synonym: "mucosa of organ of pharynx" EXACT [OBOL:automatic]
synonym: "mucosa of pharynx" EXACT [OBOL:automatic]
+synonym: "mucous membrane of pharynx" EXACT [FMA:55031]
synonym: "mucous membrane of pharynx" EXACT [OBOL:automatic]
-synonym: "mucous membrane of pharynx" EXACT [FMA:55031]
synonym: "mucous membrane of the pharynx" RELATED [BTO:0001047]
synonym: "organ mucosa of pharynx" EXACT [OBOL:automatic]
synonym: "pharynx mucosa" EXACT [OBOL:automatic]
@@ -5154,8 +5154,8 @@
def: "The longissimus is the muscle lateral to the semispinalis. It is the longest subdivision of the sacrospinalis that extends forward into the transverse processes of the posterior cervical vertebrae. [WP,unvetted]." [http://en.wikipedia.org/wiki/Longissimus]
synonym: "intermediate column of erector spinae" RELATED []
synonym: "longissimus" EXACT [FMA:77178]
+synonym: "musculus longissimus" EXACT [BTO:0001648]
synonym: "musculus longissimus" EXACT LATIN [http://en.wikipedia.org/wiki/Longissimus]
-synonym: "musculus longissimus" EXACT [BTO:0001648]
xref: BTO:0001648
xref: FMA:77178
xref: http://en.wikipedia.org/wiki/Longissimus
@@ -5228,8 +5228,8 @@
def: "An epithelium that is part of a colon [Automatically generated definition]." [OBOL:automatic]
subset: vertebrate_core
synonym: "colon epithelial tissue" EXACT [OBOL:automatic]
+synonym: "colon epithelium" EXACT [OBOL:automatic]
synonym: "colon epithelium" EXACT [FMA:17302]
-synonym: "colon epithelium" EXACT [OBOL:automatic]
synonym: "epithelial tissue of colon" EXACT [OBOL:automatic]
synonym: "epithelial tissue of large bowel" EXACT [OBOL:automatic]
synonym: "epithelium of colon" EXACT [OBOL:automatic]
@@ -5331,8 +5331,8 @@
def: "The nasal vestibule is the most anterior part of the nasal cavity. It's enclosed by the cartilages of nose and lined by the same epithelium of the skin. The other part of the nasal cavity, which is lined by the respiratory epithelium, is called nasal cavity proper. [WP,unvetted]." [http://en.wikipedia.org/wiki/Nasal_vestibule]
synonym: "vestibular part of nasal cavity" EXACT [FMA:59644]
synonym: "vestibulum nasale" RELATED [BTO:0001761]
+synonym: "vestibulum nasi" RELATED LATIN [http://en.wikipedia.org/wiki/Nasal_vestibule]
synonym: "vestibulum nasi" RELATED [BTO:0001761]
-synonym: "vestibulum nasi" RELATED LATIN [http://en.wikipedia.org/wiki/Nasal_vestibule]
xref: BTO:0001761
xref: CALOHA:TS-0660
xref: FMA:59644
@@ -5430,8 +5430,8 @@
synonym: "mucosa of organ of bronchus" EXACT [OBOL:automatic]
synonym: "mucous membrane of bronchi" EXACT [OBOL:automatic]
synonym: "mucous membrane of bronchial trunk" EXACT [OBOL:automatic]
+synonym: "mucous membrane of bronchus" EXACT [FMA:62652]
synonym: "mucous membrane of bronchus" EXACT [OBOL:automatic]
-synonym: "mucous membrane of bronchus" EXACT [FMA:62652]
synonym: "organ mucosa of bronchi" EXACT [OBOL:automatic]
synonym: "organ mucosa of bronchial trunk" EXACT [OBOL:automatic]
synonym: "organ mucosa of bronchus" EXACT [OBOL:automatic]
@@ -5535,10 +5535,10 @@
id: UBERON:0000416
name: subdural space
def: "A narrow fluid-containing space, often only a potential space, between the dura mater and the arachnoid." [BTO:0002082, http://en.wikipedia.org/wiki/Subdural_space, http://www.ncbi.nlm.nih.gov/pubmed/8421539]
+synonym: "cavum subdurale" RELATED [BTO:0002082]
synonym: "cavum subdurale" RELATED LATIN [http://en.wikipedia.org/wiki/Subdural_space]
-synonym: "cavum subdurale" RELATED [BTO:0002082]
+synonym: "spatium subdurale" RELATED [BTO:0002082]
synonym: "spatium subdurale" RELATED LATIN [http://en.wikipedia.org/wiki/Subdural_space]
-synonym: "spatium subdurale" RELATED [BTO:0002082]
synonym: "subdural cavity" RELATED [BTO:0002082]
synonym: "subdural cleavage" RELATED [BTO:0002082]
synonym: "subdural cleft" RELATED [BTO:0002082]
@@ -6071,7 +6071,7 @@
[Term]
id: UBERON:0000458
name: endocervix
-def: "1. The mucous membrane lining the canal of the cervix uteri. 2. The region of the opening of the uterine cervix into the uterine cavity." [BTO:0003002]
+def: "The region of the opening of the uterine cervix into the uterine cavity." [BTO:0003002]
xref: BTO:0003002
xref: FMA:86485
xref: http://linkedlifedata.com/resource/umls/id/C0227837
@@ -7454,8 +7454,8 @@
synonym: "pharyngeal branch of inferior vagal ganglion" EXACT [FMA:6234]
synonym: "pharyngeal branch of vagus" EXACT [FMA:6234]
synonym: "ramus pharyngealis nervi vagalis" EXACT [FMA:6234]
+synonym: "ramus pharyngeus" EXACT LATIN [FMA:6234, FMA:TA]
synonym: "ramus pharyngeus" EXACT [FMA:TA]
-synonym: "ramus pharyngeus" EXACT LATIN [FMA:6234, FMA:TA]
synonym: "ramus pharyngeus nervi vagi" RELATED LATIN [http://en.wikipedia.org/wiki/Pharyngeal_part_of_vagus_nerve]
synonym: "tenth cranial nerve pharyngeal branch" EXACT [FMA:6234]
synonym: "vagal pharyngeal branch" EXACT [FMA:6234]
@@ -7659,7 +7659,7 @@
xref: EMAPA:35695
xref: FMA:62072
xref: HBA:9229
-xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=484
+xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=484 {source="NIFSTD:birnlex_1026"}
xref: http://linkedlifedata.com/resource/umls/id/C0152327
xref: MA:0002743
xref: MBA:158
@@ -7740,7 +7740,7 @@
xref: OpenCyc:Mx4rvVjLm5wpEbGdrcN5Y29ycA
xref: Optic:nerve
xref: TAO:0000435
-xref: UMLS:C0029130 {source="ncithesaurus:Optic_Nerve"}
+xref: UMLS:C0029130 {source="NIFSTD:birnlex_1640"}
xref: VHOG:0000543
xref: XAO:0000188
xref: ZFA:0000435
@@ -8108,7 +8108,7 @@
xref: OpenCyc:Mx4rvVjT65wpEbGdrcN5Y29ycA
xref: PBA:3999
xref: TAO:0000008
-xref: UMLS:C0006104 {source="NIFSTD:birnlex_796"}
+xref: UMLS:C0006104 {source="ncithesaurus:Brain"}
xref: UMLS:C1269537 {source="NIFSTD:birnlex_796"}
xref: VHOG:0000157
xref: XAO:0000010
@@ -8162,7 +8162,7 @@
xref: MIAA:0000108
xref: NCIT:C12443
xref: PBA:128011354
-xref: UMLS:C0007776 {source="NIFSTD:birnlex_1494"}
+xref: UMLS:C0007776 {source="ncithesaurus:Cortex"}
xref: VHOG:0000722
is_a: UBERON:0011215 ! central nervous system cell part cluster
is_a: UBERON:0016548 {source="FMA"} ! central nervous system gray matter layer
@@ -8219,7 +8219,7 @@
xref: FMA:62045
xref: GAID:832
xref: HBA:9310
-xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=459
+xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=459 {source="NIFSTD:birnlex_1416"}
xref: http://linkedlifedata.com/resource/umls/id/C0029126
xref: http://www.snomedbrowser.com/Codes/Details/244453006
xref: MA:0001098
@@ -8431,7 +8431,7 @@
xref: NIFSTD_RETIRED:birnlex_1156
xref: OpenCyc:Mx4rvViTfpwpEbGdrcN5Y29ycA
xref: TAO:0000152
-xref: UMLS:C0035298 {source="NIFSTD:birnlex_1153"}
+xref: UMLS:C0035298 {source="ncithesaurus:Retina"}
xref: UMLS:C1278894 {source="NIFSTD:birnlex_1153"}
xref: VHOG:0000229
xref: XAO:0000009
@@ -8948,7 +8948,7 @@
xref: FMA:67943
xref: GAID:578
xref: HBA:9131
-xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=547
+xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=547 {source="NIFSTD:birnlex_733"}
xref: http://en.wikipedia.org/wiki/Pons
xref: http://linkedlifedata.com/resource/umls/id/C0032639
xref: http://linkedlifedata.com/resource/umls/id/C1280999
@@ -8959,7 +8959,7 @@
xref: MESH:D011149
xref: MIAA:0000115
xref: NCIT:C12511
-xref: UMLS:C0032639 {source="NIFSTD:birnlex_733"}
+xref: UMLS:C0032639 {source="ncithesaurus:Pons_Varolii"}
xref: UMLS:C1280999 {source="NIFSTD:birnlex_733"}
xref: VHOG:0001176
is_a: UBERON:0002616 ! regional part of brain
@@ -9351,8 +9351,8 @@
synonym: "gonecyst" RELATED []
synonym: "seminal gland" BROAD []
synonym: "vas efferens" RELATED []
+synonym: "vesicula seminalis" RELATED [BTO:0001234]
synonym: "vesicula seminalis" RELATED [http://en.wikipedia.org/wiki/Seminal_vesicle]
-synonym: "vesicula seminalis" RELATED [BTO:0001234]
synonym: "vesiculae seminales" RELATED LATIN [http://en.wikipedia.org/wiki/Seminal_vesicle]
synonym: "vesiculae seminales" RELATED [http://en.wikipedia.org/wiki/Seminal_vesicle]
synonym: "vesicular gland" RELATED [http://en.wikipedia.org/wiki/Seminal_vesicle]
@@ -11181,8 +11181,8 @@
xref: UMLS:C0226271 {source="ncithesaurus:Superficial_Cervical_Artery"}
is_a: UBERON:0012320 ! cervical artery
intersection_of: UBERON:0012320 ! cervical artery
-intersection_of: part_of UBERON:0035549 ! superficial vasculature
-relationship: part_of UBERON:0035549 ! superficial vasculature
+intersection_of: part_of UBERON:0035549 ! vasculature of integument
+relationship: part_of UBERON:0035549 ! vasculature of integument
[Term]
id: UBERON:0001072
@@ -13542,8 +13542,8 @@
synonym: "antrum of stomach" EXACT []
synonym: "antrum of Willis" RELATED [BTO:0001732]
synonym: "antrum pylori" RELATED [BTO:0001732]
+synonym: "antrum pyloricum" RELATED LATIN [http://en.wikipedia.org/wiki/Pyloric_antrum]
synonym: "antrum pyloricum" RELATED [BTO:0001732]
-synonym: "antrum pyloricum" RELATED LATIN [http://en.wikipedia.org/wiki/Pyloric_antrum]
synonym: "gastric antrum" RELATED [BTO:0001732]
synonym: "stomach antrum" RELATED []
synonym: "stomach pyloric antrum" EXACT []
@@ -13837,8 +13837,8 @@
def: "Anatomical cavity bounded by visceral and parietal peritoneum" [http://en.wikipedia.org/wiki/Peritoneal_cavity, http://orcid.org/0000-0002-6601-2165, https://github.com/obophenotype/uberon/issues/86]
subset: pheno_slim
subset: uberon_slim
+synonym: "cavitas peritonealis" RELATED LATIN [http://en.wikipedia.org/wiki/Peritoneal_cavity]
synonym: "cavitas peritonealis" RELATED [BTO:0001782]
-synonym: "cavitas peritonealis" RELATED LATIN [http://en.wikipedia.org/wiki/Peritoneal_cavity]
synonym: "saccus serosus peritonei" RELATED LATIN [http://en.wikipedia.org/wiki/Peritoneal_cavity]
xref: BTO:0001782
xref: EHDAA2:0001446
@@ -13862,8 +13862,8 @@
name: superior recess of lesser sac
alt_id: UBERON:0006299
synonym: "omental bursa superior recess" EXACT [MA:0000447]
+synonym: "recessus superior bursae omentalis" EXACT LATIN [FMA:TA]
synonym: "recessus superior bursae omentalis" EXACT LATIN [FMA:14708, FMA:TA]
-synonym: "recessus superior bursae omentalis" EXACT LATIN [FMA:TA]
synonym: "recessus superior omentalis" EXACT [FMA:14708]
synonym: "superior omental bursa" EXACT [FMA:14708]
synonym: "superior recess" EXACT [EHDAA2:0001958]
@@ -13886,8 +13886,8 @@
synonym: "inferior recess" EXACT [EHDAA2:0000825]
synonym: "inferior recess of omental bursa" EXACT [FMA:14709]
synonym: "omental bursa inferior recess" EXACT [MA:0000446]
+synonym: "recessus inferior bursae omentalis" EXACT LATIN [FMA:TA]
synonym: "recessus inferior bursae omentalis" EXACT LATIN [FMA:14709, FMA:TA]
-synonym: "recessus inferior bursae omentalis" EXACT LATIN [FMA:TA]
synonym: "recessus inferior omentalis" EXACT [FMA:14709]
xref: EHDAA:6083
xref: EHDAA2:0000825
@@ -16531,8 +16531,8 @@
synonym: "capsular space" EXACT [http://medical-dictionary.thefreedictionary.com/bowman's+space]
synonym: "glomerular capsule space" EXACT [MP:0011499]
synonym: "glomerular urinary space" EXACT [MP:0011499]
+synonym: "inter-glomerular space" EXACT [ZFA:0005283]
synonym: "inter-glomerular space" EXACT [ZFA:0005312]
-synonym: "inter-glomerular space" EXACT [ZFA:0005283]
synonym: "pronephric capsular space" EXACT [ZFA:0005312]
synonym: "renal capsular space" EXACT [ZFA:0005283]
synonym: "urinary space" EXACT []
@@ -17635,8 +17635,8 @@
subset: pheno_slim
subset: uberon_slim
synonym: "male prostatic urethra" EXACT [MP:0011777]
+synonym: "pars prostatica urethrae" EXACT LATIN [http://en.wikipedia.org/wiki/Prostatic_urethra]
synonym: "pars prostatica urethrae" EXACT [MP:0011777]
-synonym: "pars prostatica urethrae" EXACT LATIN [http://en.wikipedia.org/wiki/Prostatic_urethra]
synonym: "pars prostatica urethrae" RELATED [BTO:0003163]
synonym: "prostatic part of male urethra" EXACT [MP:0011777]
synonym: "prostatic part of urethra" EXACT []
@@ -18202,7 +18202,7 @@
xref: MESH:A12.207.268
xref: NCIT:C12692
xref: TAO:0002184
-xref: UMLS:C0007806 {source="ncithesaurus:Cerebrospinal_Fluid"}
+xref: UMLS:C0007806 {source="NIFSTD:birnlex_1798"}
xref: VHOG:0001278
xref: ZFA:0001626
is_a: UBERON:0007779 {source="Wikipedia"} ! transudate
@@ -18512,8 +18512,8 @@
name: semitendinosus
def: "The semitendinosus is a muscle in the back of the thigh; it is one of the hamstrings. [WP,unvetted]." [http://en.wikipedia.org/wiki/Semitendinosus_muscle]
subset: uberon_slim
+synonym: "musculus semitendinosus" RELATED LATIN [http://en.wikipedia.org/wiki/Semitendinosus_muscle]
synonym: "musculus semitendinosus" RELATED [BTO:0001236]
-synonym: "musculus semitendinosus" RELATED LATIN [http://en.wikipedia.org/wiki/Semitendinosus_muscle]
synonym: "semitendinosus muscle" EXACT []
xref: BTO:0001236
xref: EMAPA:35762
@@ -18532,8 +18532,8 @@
name: tensor fasciae latae muscle
def: "The tensor fasciae latae or tensor fasciæ latæ is a muscle of the thigh. [WP,unvetted]." [http://en.wikipedia.org/wiki/Tensor_fasciae_latae_muscle]
subset: uberon_slim
+synonym: "musculus tensor fasciae latae" EXACT LATIN [FMA:22423, FMA:TA]
synonym: "musculus tensor fasciae latae" EXACT LATIN [http://en.wikipedia.org/wiki/Tensor_fasciae_latae_muscle]
-synonym: "musculus tensor fasciae latae" EXACT LATIN [FMA:22423, FMA:TA]
synonym: "tensor fasciae lata" EXACT [MA:0002391]
synonym: "tensor fasciae lata muscle" EXACT []
synonym: "tensor fasciae latae" EXACT [FMA:22423]
@@ -18555,8 +18555,8 @@
subset: efo_slim
subset: pheno_slim
subset: uberon_slim
+synonym: "musculus quadriceps femoris" RELATED LATIN [http://en.wikipedia.org/wiki/Quadriceps_femoris_muscle]
synonym: "musculus quadriceps femoris" RELATED [BTO:0001149]
-synonym: "musculus quadriceps femoris" RELATED LATIN [http://en.wikipedia.org/wiki/Quadriceps_femoris_muscle]
synonym: "quadricep muscle" RELATED [BTO:0001149]
synonym: "quadriceps" EXACT []
synonym: "quadriceps femoris muscle" EXACT []
@@ -19765,8 +19765,8 @@
synonym: "hamate" EXACT [MA:0001343]
synonym: "hamate bone" EXACT [FMA:23730]
synonym: "hand distal carpal bone 4" RELATED [MA:0001343]
+synonym: "os hamatum" RELATED LATIN [http://en.wikipedia.org/wiki/Hamate_bone]
synonym: "os hamatum" RELATED [VSAO:0005046]
-synonym: "os hamatum" RELATED LATIN [http://en.wikipedia.org/wiki/Hamate_bone]
synonym: "unciform" RELATED [MA:0001343]
synonym: "unciform bone" EXACT [FMA:23730]
synonym: "uncinate" RELATED [MA:0001343]
@@ -20345,8 +20345,8 @@
synonym: "medial cuneiform" EXACT [FMA:24518]
synonym: "medial cuneiform bone" EXACT [FMA:24518]
synonym: "os cuneiform primum" RELATED LATIN [http://en.wikipedia.org/wiki/Medial_cuneiform_bone]
+synonym: "os cuneiforme mediale" EXACT LATIN [NominaAnatomicaVeterinaria:2005]
synonym: "os cuneiforme mediale" EXACT LATIN [FMA:TA]
-synonym: "os cuneiforme mediale" EXACT LATIN [NominaAnatomicaVeterinaria:2005]
synonym: "os cuneiforme mediale" RELATED LATIN [http://en.wikipedia.org/wiki/Medial_cuneiform_bone]
synonym: "os cuneiforme primum" RELATED [BTO:0002360]
synonym: "os tarsale I" EXACT LATIN [NominaAnatomicaVeterinaria:2005]
@@ -20388,8 +20388,8 @@
synonym: "middle cuneiform" EXACT []
synonym: "middle cuneiform bone of foot" EXACT []
synonym: "os cuneiforme intermedium" EXACT LATIN [NominaAnatomicaVeterinaria:2005]
+synonym: "os cuneiforme intermedium" RELATED LATIN [http://en.wikipedia.org/wiki/Intermediate_cuneiform_bone]
synonym: "os cuneiforme intermedium" RELATED [BTO:0002359]
-synonym: "os cuneiforme intermedium" RELATED LATIN [http://en.wikipedia.org/wiki/Intermediate_cuneiform_bone]
synonym: "os cuneiforme secundum" RELATED [BTO:0002359]
synonym: "os cuneiforme secundum" RELATED LATIN [http://en.wikipedia.org/wiki/Intermediate_cuneiform_bone]
synonym: "os tarsale II" EXACT LATIN [NominaAnatomicaVeterinaria:2005]
@@ -21401,8 +21401,8 @@
synonym: "auxillery nerve" RELATED [http://en.wikipedia.org/wiki/Axillary_nerve]
synonym: "circumflex humeral nerve" EXACT []
synonym: "circumflex nerve" RELATED [http://en.wikipedia.org/wiki/Axillary_nerve]
+synonym: "nervus axillaris" RELATED LATIN [http://en.wikipedia.org/wiki/Axillary_nerve]
synonym: "nervus axillaris" RELATED [http://en.wikipedia.org/wiki/Axillary_nerve]
-synonym: "nervus axillaris" RELATED LATIN [http://en.wikipedia.org/wiki/Axillary_nerve]
xref: Axillary:nerve
xref: EMAPA:18802
xref: FMA:37072
@@ -21916,8 +21916,8 @@
synonym: "aorta abdominalis" RELATED LATIN [http://en.wikipedia.org/wiki/Abdominal_aorta]
synonym: "descending abdominal aorta" EXACT [FMA:3789]
synonym: "pars abdominalis aortae" EXACT [FMA:3789]
+synonym: "pars abdominalis aortae" RELATED [BTO:0002976]
synonym: "pars abdominalis aortae" RELATED LATIN [http://en.wikipedia.org/wiki/Abdominal_aorta]
-synonym: "pars abdominalis aortae" RELATED [BTO:0002976]
xref: Abdominal:aorta
xref: BTO:0002976
xref: EFO:0002524
@@ -22993,8 +22993,8 @@
synonym: "inferior constrictor of pharynx" EXACT [FMA:46623]
synonym: "inferior constrictor pharyngeus" EXACT [FMA:46623]
synonym: "inferior pharyngeal constrictor" RELATED [http://en.wikipedia.org/wiki/Inferior_pharyngeal_constrictor_muscle]
+synonym: "musculus constrictor pharyngis inferior" EXACT LATIN [FMA:46623, FMA:TA]
synonym: "musculus constrictor pharyngis inferior" EXACT LATIN [FMA:TA]
-synonym: "musculus constrictor pharyngis inferior" EXACT LATIN [FMA:46623, FMA:TA]
synonym: "musculus constrictor pharyngis inferior" RELATED LATIN [http://en.wikipedia.org/wiki/Inferior_pharyngeal_constrictor_muscle]
xref: EMAPA:18965
xref: FMA:46623
@@ -23132,8 +23132,8 @@
synonym: "craniofacial muscle" RELATED [EMAPA:25133]
synonym: "face muscle" EXACT [FMA:46751]
synonym: "face muscle organ" EXACT [OBOL:automatic]
+synonym: "facial muscle" EXACT [XAO:0001013]
synonym: "facial muscle" EXACT [FMA:46751]
-synonym: "facial muscle" EXACT [XAO:0001013]
synonym: "facial muscle proper" EXACT []
synonym: "facial nerve innervated muscle" EXACT [https://orcid.org/0000-0002-6601-2165]
synonym: "facial nerve muscle" EXACT []
@@ -23215,7 +23215,7 @@
xref: FMA:46787
xref: GAID:830
xref: HBA:9300
-xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=32
+xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=32 {source="NIFSTD:birnlex_1319"}
xref: http://linkedlifedata.com/resource/umls/id/C0028938
xref: http://linkedlifedata.com/resource/umls/id/C1268984
xref: http://www.snomedbrowser.com/Codes/Details/180937006
@@ -23326,8 +23326,8 @@
synonym: "precava" RELATED []
synonym: "superior caval vein" EXACT [http://orcid.org/0000-0002-6601-2165]
synonym: "superior vena cava" EXACT [FMA:4720]
+synonym: "vena cava superior" RELATED [BTO:0002683]
synonym: "vena cava superior" RELATED LATIN [http://en.wikipedia.org/wiki/Superior_vena_cava]
-synonym: "vena cava superior" RELATED [BTO:0002683]
synonym: "vena maxima" RELATED LATIN [http://en.wikipedia.org/wiki/Superior_vena_cava]
xref: BTO:0002683
xref: EHDAA:8726
@@ -24713,7 +24713,7 @@
xref: FMA:50864
xref: GAID:829
xref: HBA:9316
-xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=488 {source="NIFSTD:birnlex_1646"}
+xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=488
xref: http://linkedlifedata.com/resource/umls/id/C0028864
xref: http://www.snomedbrowser.com/Codes/Details/362456009
xref: MA:0001095
@@ -24825,7 +24825,7 @@
xref: OpenCyc:Mx4rwMF8CJwpEbGdrcN5Y29ycA
xref: TAO:0000697
xref: Trigeminal:nerve
-xref: UMLS:C0040996 {source="ncithesaurus:Trigeminal_Nerve"}
+xref: UMLS:C0040996 {source="NIFSTD:birnlex_869"}
xref: VHOG:0000704
xref: XAO:0003092
xref: ZFA:0000697
@@ -24927,7 +24927,7 @@
xref: NCIT:C12714
xref: OpenCyc:Mx4rvthgEpwpEbGdrcN5Y29ycA
xref: TAO:0000664
-xref: UMLS:C0015462 {source="ncithesaurus:Facial_Nerve"}
+xref: UMLS:C0015462 {source="NIFSTD:birnlex_827"}
xref: VHOG:0000706
xref: XAO:0003094
xref: ZFA:0000664
@@ -24983,7 +24983,7 @@
xref: NCIT:C12996
xref: OpenCyc:Mx4rvVjMFZwpEbGdrcN5Y29ycA
xref: TAO:0000247
-xref: UMLS:C0001162 {source="ncithesaurus:Vestibulocochlear_Nerve"}
+xref: UMLS:C0001162 {source="NIFSTD:birnlex_890"}
xref: UMLS:C1278835 {source="NIFSTD:birnlex_890"}
xref: Vestibulocochlear:nerve
xref: VHOG:0000695
@@ -25034,7 +25034,7 @@
xref: NCIT:C12723
xref: OpenCyc:Mx4rwIr5X5wpEbGdrcN5Y29ycA
xref: TAO:0000668
-xref: UMLS:C0017679 {source="NIFSTD:birnlex_899"}
+xref: UMLS:C0017679 {source="ncithesaurus:Glossopharyngeal_Nerve"}
xref: UMLS:C1305752 {source="NIFSTD:birnlex_899"}
xref: VHOG:0000701
xref: XAO:0003096
@@ -25082,7 +25082,7 @@
xref: MESH:D007002
xref: NCIT:C12732
xref: OpenCyc:Mx4rv9eWA5wpEbGdrcN5Y29ycA
-xref: UMLS:C0020614 {source="NIFSTD:birnlex_820"}
+xref: UMLS:C0020614 {source="ncithesaurus:Hypoglossal_Nerve"}
xref: VHOG:0000693
xref: XAO:0004215
is_a: UBERON:0001785 ! cranial nerve
@@ -25574,8 +25574,8 @@
subset: uberon_slim
synonym: "butterfly bone" RELATED [http://en.wikipedia.org/wiki/Sphenoid_bone]
synonym: "os sphenoidale" EXACT LATIN [FMA:52736, FMA:TA]
+synonym: "os sphenoidale" RELATED LATIN [http://en.wikipedia.org/wiki/Sphenoid_bone]
synonym: "os sphenoidale" RELATED [http://en.wikipedia.org/wiki/Sphenoid_bone]
-synonym: "os sphenoidale" RELATED LATIN [http://en.wikipedia.org/wiki/Sphenoid_bone]
synonym: "os sphenoidum" RELATED [http://en.wikipedia.org/wiki/Sphenoid_bone]
synonym: "sphenoid" EXACT []
synonym: "sphenoid complex" RELATED []
@@ -25765,8 +25765,8 @@
synonym: "os zygomaticum" EXACT [FMA:52747, FMA:TA]
synonym: "os zygomaticum" RELATED LATIN [http://en.wikipedia.org/wiki/Zygomatic_bone]
synonym: "os zygomaticus" RELATED [http://en.wikipedia.org/wiki/Zygomatic_bone]
+synonym: "zygoma" RELATED [GAID:225]
synonym: "zygoma" RELATED [http://en.wikipedia.org/wiki/Zygomatic_bone]
-synonym: "zygoma" RELATED [GAID:225]
synonym: "zygomatic" RELATED []
synonym: "zygomatic bone" EXACT HUMAN_PREFERRED [https://github.com/obophenotype/uberon/issues/121, MA:0001497]
xref: EMAPA:25111
@@ -25797,8 +25797,8 @@
synonym: "lower jaw bone" BROAD SENSU []
synonym: "lower mandibula" NARROW SENSU [http://en.wikipedia.org/wiki/Mandible]
synonym: "mammaliam mandible" EXACT []
+synonym: "mandibula" RELATED [BTO:0001748]
synonym: "mandibula" RELATED LATIN [http://en.wikipedia.org/wiki/Human_mandible]
-synonym: "mandibula" RELATED [BTO:0001748]
synonym: "mandibular series" RELATED [ZFA:0001273]
synonym: "mandibulla" EXACT []
xref: BTO:0001748
@@ -25830,8 +25830,8 @@
synonym: "hyoid bone" RELATED [http://en.wikipedia.org/wiki/Hyoid_bone]
synonym: "hyoideum" RELATED [http://en.wikipedia.org/wiki/Hyoid_bone]
synonym: "lingual bone" RELATED [http://en.wikipedia.org/wiki/Hyoid_bone]
+synonym: "os hyoideum" RELATED LATIN [http://en.wikipedia.org/wiki/Hyoid_bone]
synonym: "os hyoideum" RELATED [http://en.wikipedia.org/wiki/Hyoid_bone]
-synonym: "os hyoideum" RELATED LATIN [http://en.wikipedia.org/wiki/Hyoid_bone]
xref: AAO:0000684
xref: EMAPA:18650
xref: FMA:52749
@@ -26284,8 +26284,8 @@
synonym: "ganglion genicularum" EXACT [FMA:53414]
synonym: "ganglion geniculi" RELATED [http://en.wikipedia.org/wiki/Geniculate_ganglion]
synonym: "ganglion geniculi nervi facialis" RELATED LATIN [http://en.wikipedia.org/wiki/Geniculate_ganglion]
+synonym: "genicular ganglion" EXACT [http://en.wikipedia.org/wiki/Geniculate_ganglion]
synonym: "genicular ganglion" EXACT [FMA:53414]
-synonym: "genicular ganglion" EXACT [http://en.wikipedia.org/wiki/Geniculate_ganglion]
synonym: "geniculate" BROAD [http://en.wikipedia.org/wiki/Geniculate_ganglion]
synonym: "geniculate ganglion" RELATED [MA:0001076]
synonym: "gVII" EXACT [ZFA:0001291]
@@ -26445,8 +26445,8 @@
subset: uberon_slim
synonym: "septal cartilage" RELATED [http://en.wikipedia.org/wiki/Nasal_septum]
synonym: "septum mobile nasi" RELATED [http://en.wikipedia.org/wiki/Nasal_septum]
+synonym: "septum nasi" RELATED LATIN [http://en.wikipedia.org/wiki/Nasal_septum]
synonym: "septum nasi" RELATED [http://en.wikipedia.org/wiki/Nasal_septum]
-synonym: "septum nasi" RELATED LATIN [http://en.wikipedia.org/wiki/Nasal_septum]
synonym: "septum of the nose" RELATED [http://en.wikipedia.org/wiki/Nasal_septum]
xref: AAO:0000559
xref: AAO:0010135
@@ -26728,11 +26728,10 @@
subset: pheno_slim
subset: uberon_slim
subset: vertebrate_core
-synonym: "3" BROAD ABBREVIATION [http://uri.neuinfo.org/nif/nifstd/birnlex_1240, NIFSTD:NeuroNames_abbrevSource]
synonym: "motor nucleus III" RELATED []
synonym: "nIII" RELATED []
+synonym: "nucleus nervi oculomotorii" EXACT [FMA:TA]
synonym: "nucleus nervi oculomotorii" EXACT LATIN [FMA:54510, FMA:TA]
-synonym: "nucleus nervi oculomotorii" EXACT [FMA:TA]
synonym: "nucleus oculomotorius" RELATED LATIN [NeuroNames:492]
synonym: "nucleus of oculomotor nerve" EXACT [FMA:54510]
synonym: "nucleus of oculomotor nuclear complex" EXACT [http://orcid.org/0000-0002-6601-2165]
@@ -26754,7 +26753,7 @@
xref: EV:0100250
xref: FMA:54510
xref: HBA:9030
-xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=492
+xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=492 {source="NIFSTD:birnlex_1240"}
xref: http://en.wikipedia.org/wiki/Nucleus_of_oculomotor_nerve
xref: http://linkedlifedata.com/resource/umls/id/C0228686
xref: http://www.snomedbrowser.com/Codes/Details/362457000
@@ -26908,7 +26907,7 @@
xref: EV:0100292
xref: FMA:54588
xref: HBA:9516
-xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=765
+xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=765 {source="NIFSTD:birnlex_2650"}
xref: http://linkedlifedata.com/resource/umls/id/C0152400
xref: http://linkedlifedata.com/resource/umls/id/C1281211
xref: http://www.snomedbrowser.com/Codes/Details/280184006
@@ -26916,7 +26915,7 @@
xref: MBA:135
xref: NCIT:C12835
xref: Nucleus:ambiguus
-xref: UMLS:C0152400 {source="NIFSTD:birnlex_2650"}
+xref: UMLS:C0152400 {source="ncithesaurus:Nucleus_Ambiguus"}
xref: UMLS:C1281211 {source="NIFSTD:birnlex_2650"}
is_a: UBERON:0007635 ! nucleus of medulla oblongata
is_a: UBERON:0011775 {source="Wikipedia"} ! vagus nerve nucleus
@@ -27108,7 +27107,7 @@
xref: http://www.snomedbrowser.com/Codes/Details/368728006
xref: MA:0001593
xref: NCIT:C33258
-xref: UMLS:C0226964 {source="NIFSTD:birnlex_4102"}
+xref: UMLS:C0226964 {source="ncithesaurus:Papilla_of_the_Tongue"}
xref: UMLS:C1289183 {source="NIFSTD:birnlex_4102"}
is_a: UBERON:0000064 ! organ part
relationship: part_of UBERON:0005020 ! mucosa of tongue
@@ -27711,8 +27710,8 @@
subset: pheno_slim
subset: uberon_slim
subset: vertebrate_core
+synonym: "dentin" EXACT [ZFA:0005143]
synonym: "dentin" EXACT [MA:0002542]
-synonym: "dentin" EXACT [ZFA:0005143]
synonym: "dentine of tooth" EXACT []
synonym: "predentin" NARROW [GO:0070468]
xref: BTO:0003453
@@ -28103,8 +28102,8 @@
comment: This structure regresses in most males
subset: pheno_slim
subset: uberon_slim
+synonym: "ductus lactiferi" RELATED [BTO:0002845]
synonym: "ductus lactiferi" RELATED LATIN [http://en.wikipedia.org/wiki/Lactiferous_duct]
-synonym: "ductus lactiferi" RELATED [BTO:0002845]
synonym: "galactophorous duct" RELATED [http://en.wikipedia.org/wiki/Lactiferous_duct]
synonym: "galactophorous tubule" RELATED [BTO:0002845]
synonym: "lactiferous duct" EXACT [FMA:58006]
@@ -28750,7 +28749,7 @@
xref: MA:0001307
xref: MESH:D005584
xref: NCIT:C26463
-xref: UMLS:C0016622 {source="ncithesaurus:Fovea_Centralis"}
+xref: UMLS:C0016622 {source="NIFSTD:birnlex_2543"}
xref: UMLS:C0450290 {source="NIFSTD:birnlex_2543"}
xref: VHOG:0001572
is_a: UBERON:0000064 ! organ part
@@ -29137,8 +29136,8 @@
def: "The chamber in the eyeball enclosing the vitreous humor, bounded anteriorly by the lens and ciliary body and posteriorly by the posterior wall of the eyeball[BTO,modified]." [BTO:0002087]
subset: uberon_slim
synonym: "camera postrema" EXACT [FMA:58848]
+synonym: "camera postrema bulbi oculi" EXACT [FMA:TA]
synonym: "camera postrema bulbi oculi" EXACT LATIN [FMA:58848, FMA:TA]
-synonym: "camera postrema bulbi oculi" EXACT [FMA:TA]
synonym: "camera vitrea" EXACT [FMA:58848]
synonym: "camera vitrea bulbi" EXACT [FMA:58848]
synonym: "postremal chamber" EXACT [FMA:58848]
@@ -29317,8 +29316,8 @@
synonym: "ganglion of sympathetic nervous system" EXACT [OBOL:automatic]
synonym: "ganglion of sympathetic part of autonomic division of nervous system" EXACT [OBOL:automatic]
synonym: "ganglion sympatheticum" EXACT []
+synonym: "ganglion sympathicum" RELATED [BTO:0001333]
synonym: "ganglion sympathicum" RELATED LATIN [http://en.wikipedia.org/wiki/Sympathetic_ganglion]
-synonym: "ganglion sympathicum" RELATED [BTO:0001333]
synonym: "sympathetic nervous system ganglion" EXACT [OBOL:automatic]
synonym: "sympathetic part of autonomic division of nervous system ganglion" EXACT [OBOL:automatic]
xref: AAO:0010773
@@ -30393,7 +30392,7 @@
xref: NCIT:C12499
xref: OpenCyc:Mx4rwJ8SsJwpEbGdrcN5Y29ycA
xref: TAO:0000217
-xref: UMLS:C0022889 {source="ncithesaurus:Internal_Ear"}
+xref: UMLS:C0022889 {source="NIFSTD:birnlex_1196"}
xref: UMLS:C1268973 {source="NIFSTD:birnlex_1196"}
xref: VHOG:0000284
xref: XAO:0000192
@@ -30483,6 +30482,7 @@
def: "A collection of channels that connects the conjunctival sac with the nasal cavity, encompassing the lacrimal ducts, the lacrimal sac and the naso-lacrimal duct." [http://orcid.org/0000-0002-6601-2165]
subset: pheno_slim
subset: uberon_slim
+synonym: "lacrimal duct" RELATED [FMA:61063, MA:0001295]
synonym: "tear duct" RELATED [MA:0001295]
xref: EMAPA:19245
xref: FMA:61063
@@ -30516,8 +30516,8 @@
subset: pheno_slim
subset: uberon_slim
subset: vertebrate_core
+synonym: "endolympha" RELATED LATIN [http://en.wikipedia.org/wiki/Endolymph]
synonym: "endolympha" RELATED [http://en.wikipedia.org/wiki/Endolymph]
-synonym: "endolympha" RELATED LATIN [http://en.wikipedia.org/wiki/Endolymph]
synonym: "endolymphatic fluid" EXACT []
synonym: "Scarpa's fluid" RELATED [http://en.wikipedia.org/wiki/Endolymph]
xref: EMAPA:36548
@@ -30608,8 +30608,8 @@
synonym: "cochlea duct" EXACT [NIFSTD:birnlex_2562]
synonym: "cochlear aqueduct" RELATED []
synonym: "cochlear duct" EXACT []
+synonym: "ductus cochlearis" RELATED LATIN [BTO:0001692]
synonym: "ductus cochlearis" RELATED LATIN [http://en.wikipedia.org/wiki/Cochlear_duct]
-synonym: "ductus cochlearis" RELATED LATIN [BTO:0001692]
synonym: "membranous cochlea" RELATED [BTO:0001692]
synonym: "Reissner's canal" EXACT [FMA:61119]
synonym: "Reissners canal" EXACT [NIFSTD:birnlex_2562]
@@ -30632,7 +30632,7 @@
xref: MESH:D003053
xref: NCIT:C32335
xref: UMLS:C1281166 {source="NIFSTD:birnlex_2562"}
-xref: UMLS:C1323110 {source="NIFSTD:birnlex_2562"}
+xref: UMLS:C1323110 {source="ncithesaurus:Cochlear_Duct"}
xref: VHOG:0000507
is_a: UBERON:0000025 ! tube
is_a: UBERON:0004121 ! ectoderm-derived structure
@@ -30973,7 +30973,7 @@
xref: FMA:61825
xref: GAID:635
xref: HBA:4132
-xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=125 {source="NIFSTD:birnlex_1160"}
+xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=125
xref: http://linkedlifedata.com/resource/umls/id/C0039485
xref: http://linkedlifedata.com/resource/umls/id/C1268978
xref: http://www.snomedbrowser.com/Codes/Details/180921000
@@ -31006,7 +31006,7 @@
xref: FMA:61826
xref: GAID:680
xref: HBA:4084
-xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=95 {source="NIFSTD:birnlex_1148"}
+xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=95
xref: http://linkedlifedata.com/resource/umls/id/C0030560
xref: http://www.snomedbrowser.com/Codes/Details/180922007
xref: MAT:0000506
@@ -31055,7 +31055,7 @@
xref: NCIT:C12451
xref: OpenCyc:Mx4rvvyAjJwpEbGdrcN5Y29ycA
xref: PBA:10082
-xref: UMLS:C0007461 {source="ncithesaurus:Caudate_Nucleus"}
+xref: UMLS:C0007461 {source="NIFSTD:birnlex_1373"}
is_a: UBERON:0009663 ! telencephalic nucleus
relationship: part_of UBERON:0000369 {is_redundant="true", source="EHDAA2", source="ncithesaurus"} ! corpus striatum
relationship: part_of UBERON:0002435 {is_redundant="true", source="NIFSTD"} ! striatum
@@ -31130,7 +31130,7 @@
xref: MESH:A08.186.211.730.885.105.487.397
xref: NCIT:C12449
xref: PBA:10097
-xref: UMLS:C0017651 {source="NIFSTD:birnlex_1234"}
+xref: UMLS:C0017651 {source="ncithesaurus:Globus_Pallidus"}
is_a: UBERON:0009663 ! telencephalic nucleus
relationship: develops_from UBERON:0001894 ! diencephalon
relationship: part_of UBERON:0001869 ! cerebral hemisphere
@@ -31153,8 +31153,8 @@
synonym: "amygdaloid nucleus" RELATED [FMA:61841]
synonym: "archistriatum" EXACT []
synonym: "corpus amygdalae" RELATED LATIN [NeuroNames:237]
+synonym: "corpus amygdaloideum" RELATED LATIN [http://en.wikipedia.org/wiki/Amygdala]
synonym: "corpus amygdaloideum" RELATED [BTO:0001042]
-synonym: "corpus amygdaloideum" RELATED LATIN [http://en.wikipedia.org/wiki/Amygdala]
synonym: "nucleus amygdalae" RELATED [BTO:0001042]
xref: BAMS:Amg
xref: BAMS:AMY
@@ -31185,7 +31185,7 @@
xref: NCIT:C12440
xref: OpenCyc:Mx4rwJC_2ZwpEbGdrcN5Y29ycA
xref: PBA:4002
-xref: UMLS:C0002708 {source="ncithesaurus:Amygdala"}
+xref: UMLS:C0002708 {source="NIFSTD:birnlex_1241"}
xref: VHOG:0001277
is_a: UBERON:0002420 {source="FMA"} ! basal ganglion
is_a: UBERON:0005401 ! cerebral hemisphere gray matter
@@ -31268,7 +31268,7 @@
xref: EMAPA:35598
xref: FMA:61882
xref: HBA:4309
-xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=265 {source="NIFSTD:birnlex_719"}
+xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=265
xref: http://en.wikipedia.org/wiki/Nucleus_of_diagonal_band
xref: http://linkedlifedata.com/resource/umls/id/C0175227
xref: MA:0000936
@@ -31314,7 +31314,7 @@
xref: EMAPA:35169
xref: FMA:61884
xref: HBA:4313
-xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=267
+xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=267 {source="NIFSTD:birnlex_724"}
xref: http://linkedlifedata.com/resource/umls/id/C0228365
xref: MA:0000925
xref: MBA:351
@@ -31382,7 +31382,7 @@
xref: FMA:61889
xref: GAID:672
xref: HBA:4290
-xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=277
+xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=277 {source="NIFSTD:birnlex_727"}
xref: http://linkedlifedata.com/resource/umls/id/C0028633
xref: http://www.snomedbrowser.com/Codes/Details/427667007
xref: MA:0000892
@@ -31574,7 +31574,7 @@
xref: MESH:D020772
xref: NCIT:C13082
xref: PBA:10102
-xref: UMLS:C0152341 {source="ncithesaurus:Internal_Capsule"}
+xref: UMLS:C0152341 {source="NIFSTD:birnlex_1659"}
is_a: UBERON:0002437 ! cerebral hemisphere white matter
[Term]
@@ -31590,8 +31590,8 @@
synonym: "lateral olfactory tract. body" RELATED [BAMS:lot]
synonym: "LOT" RELATED ABBREVIATION []
synonym: "olfactory tract" RELATED [NeuroNames:284]
+synonym: "stria olfactoria lateralis" RELATED LATIN [NeuroNames:284]
synonym: "stria olfactoria lateralis" RELATED LATIN [http://en.wikipedia.org/wiki/Lateral_olfactory_stria]
-synonym: "stria olfactoria lateralis" RELATED LATIN [NeuroNames:284]
synonym: "tractus olfactorius lateralis" EXACT LATIN [ZFA:0000229]
synonym: "tractus olfactorius lateralis" RELATED LATIN [NeuroNames:284]
xref: BAMS:LDTR
@@ -31834,7 +31834,7 @@
xref: FMA:62001
xref: GAID:618
xref: HBA:4391
-xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=288
+xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=288 {source="NIFSTD:birnlex_1503"}
xref: http://en.wikipedia.org/wiki/Diencephalon
xref: http://linkedlifedata.com/resource/umls/id/C0012144
xref: http://www.snomedbrowser.com/Codes/Details/279328001
@@ -31920,7 +31920,7 @@
xref: EV:0100275
xref: FMA:62004
xref: GAID:590
-xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=698
+xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=698 {source="NIFSTD:birnlex_957"}
xref: http://en.wikipedia.org/wiki/Bone_marrow_of_ovary_oblongata
xref: http://linkedlifedata.com/resource/umls/id/C0025148
xref: http://linkedlifedata.com/resource/umls/id/C1269575
@@ -31974,7 +31974,7 @@
xref: GAID:656
xref: galen:Thalamus
xref: HBA:4392
-xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=300
+xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=300 {source="NIFSTD:birnlex_954"}
xref: http://en.wikipedia.org/wiki/Thalamus
xref: http://linkedlifedata.com/resource/umls/id/C0039729
xref: http://www.snomedbrowser.com/Codes/Details/244433007
@@ -31987,7 +31987,7 @@
xref: OpenCyc:Mx4rwMPQ65wpEbGdrcN5Y29ycA
xref: PBA:128013014
xref: TAO:0001215
-xref: UMLS:C0039729 {source="ncithesaurus:Thalamus"}
+xref: UMLS:C0039729 {source="NIFSTD:birnlex_954"}
xref: VHOG:0000657
xref: ZFA:0001215
is_a: UBERON:0002616 ! regional part of brain
@@ -32022,7 +32022,7 @@
xref: GAID:460
xref: galen:Hypothalamus
xref: HBA:4540
-xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=292 {source="NIFSTD:birnlex_734"}
+xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=292
xref: http://en.wikipedia.org/wiki/Hypothalamus
xref: http://linkedlifedata.com/resource/umls/id/C0020663
xref: http://www.snomedbrowser.com/Codes/Details/264483005
@@ -32086,7 +32086,7 @@
xref: OpenCyc:Mx4rvneLQpwpEbGdrcN5Y29ycA
xref: PBA:128013147
xref: TAO:0000509
-xref: UMLS:C0152361 {source="ncithesaurus:Epithalamus"}
+xref: UMLS:C0152361 {source="NIFSTD:birnlex_1710"}
xref: VHOG:0000178
xref: ZFA:0000509
is_a: UBERON:0002616 ! regional part of brain
@@ -32107,8 +32107,8 @@
synonym: "subthalamic region" EXACT [FMA:62010, NIFSTD:birnlex_708]
synonym: "subthalamus" EXACT [http://en.wikipedia.org/wiki/Thalamus, NIFSTD:birnlex_708]
synonym: "thalamus ventralis" EXACT LATIN [NIFSTD:birnlex_708]
+synonym: "ventral thalamus" EXACT [GO:0021539]
synonym: "ventral thalamus" EXACT [MA:0000181]
-synonym: "ventral thalamus" EXACT [GO:0021539]
xref: BAMS:SbTh
xref: BAMS:Ventral_thalamus
xref: BAMS:VNT
@@ -32285,8 +32285,8 @@
synonym: "epiphysis" RELATED INCONSISTENT [ZFA:0000019]
synonym: "epiphysis cerebri" RELATED [http://en.wikipedia.org/wiki/Epiphysis_cerebri]
synonym: "frontal organ" RELATED [VHOG:0000051]
+synonym: "glandula pinealis" EXACT LATIN [FMA:62033, FMA:TA]
synonym: "glandula pinealis" EXACT LATIN [FMA:TA]
-synonym: "glandula pinealis" EXACT LATIN [FMA:62033, FMA:TA]
synonym: "Pi" BROAD ABBREVIATION [http://uri.neuinfo.org/nif/nifstd/birnlex_1184, NIFSTD:NeuroNames_abbrevSource]
synonym: "pineal" RELATED [VHOG:0000051]
synonym: "pineal gland" EXACT [FMA:62033]
@@ -32323,7 +32323,7 @@
xref: OpenCyc:Mx4rv2FMGpwpEbGdrcN5Y29ycA
xref: Pineal:gland
xref: TAO:0000019
-xref: UMLS:C0031939 {source="ncithesaurus:Pineal_Gland"}
+xref: UMLS:C0031939 {source="NIFSTD:birnlex_1184"}
xref: VHOG:0000051
xref: XAO:0000160
xref: ZFA:0000019
@@ -32422,7 +32422,7 @@
xref: FMA:62046
xref: GAID:735
xref: HBA:9309
-xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=460
+xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=460 {source="NIFSTD:birnlex_1684"}
xref: http://linkedlifedata.com/resource/umls/id/C0152405
xref: http://www.snomedbrowser.com/Codes/Details/280952003
xref: MA:0001099
@@ -32431,7 +32431,7 @@
xref: NCIT:C33218
xref: Optic:tract
xref: TAO:0000252
-xref: UMLS:C0152405 {source="NIFSTD:birnlex_1684"}
+xref: UMLS:C0152405 {source="ncithesaurus:Optic_Tract"}
xref: VHOG:0001164
xref: XAO:0004101
xref: ZFA:0000252
@@ -32447,8 +32447,8 @@
subset: uberon_slim
subset: vertebrate_core
synonym: "commissura habenularis" RELATED LATIN [NeuroNames:299]
+synonym: "commissura habenularum" EXACT [ZFA:0000359]
synonym: "commissura habenularum" EXACT LATIN [http://en.wikipedia.org/wiki/Habenular_commissure]
-synonym: "commissura habenularum" EXACT [ZFA:0000359]
synonym: "commissure habenularum" EXACT [MP:0008231]
synonym: "habenular commissure (Haller)" RELATED [NeuroNames:299]
synonym: "habenular commisure" RELATED [BAMS:hbc]
@@ -32463,7 +32463,7 @@
xref: FMA:62048
xref: Habenular:commissure
xref: HBA:9227
-xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=299
+xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=299 {source="NIFSTD:birnlex_1609"}
xref: http://linkedlifedata.com/resource/umls/id/C0152363
xref: http://www.snomedbrowser.com/Codes/Details/279335009
xref: MBA:611
@@ -32497,7 +32497,7 @@
xref: FMA:62064
xref: GAID:736
xref: HBA:265505190
-xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=433 {source="NIFSTD:birnlex_908"}
+xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=433
xref: http://en.wikipedia.org/wiki/Medial_forebrain_bundle
xref: http://linkedlifedata.com/resource/umls/id/C0025055
xref: MBA:54
@@ -32504,7 +32504,7 @@
xref: MESH:D008474
xref: NCIT:C13083
xref: TAO:0005111
-xref: UMLS:C0025055 {source="NIFSTD:birnlex_908"}
+xref: UMLS:C0025055 {source="ncithesaurus:Medial_Forebrain_Bundle"}
xref: ZFA:0005111
is_a: UBERON:0005838 ! fasciculus of brain
disjoint_from: UBERON:2007012 {source="lexical"} ! lateral forebrain bundle
@@ -32945,8 +32945,8 @@
synonym: "lateral geniculate nucleus" EXACT []
synonym: "LGB" RELATED ABBREVIATION [BTO:0004367]
synonym: "LGN" BROAD ABBREVIATION [http://uri.neuinfo.org/nif/nifstd/birnlex_1662, NIFSTD:NeuroNames_abbrevSource]
+synonym: "nucleus corporis geniculati lateralis" RELATED LATIN [NeuroNames:352]
synonym: "nucleus corporis geniculati lateralis" RELATED [BAMS:LG]
-synonym: "nucleus corporis geniculati lateralis" RELATED LATIN [NeuroNames:352]
synonym: "nucleus geniculatus lateralis" EXACT [NIFSTD:birnlex_1662]
xref: BAMS:C.gl.
xref: BAMS:LG
@@ -33010,7 +33010,7 @@
xref: MA:0000870
xref: MBA:475
xref: NCIT:C32843
-xref: UMLS:C0086596 {source="ncithesaurus:Internal_Geniculate_Body"}
+xref: UMLS:C0086596 {source="NIFSTD:birnlex_1670"}
is_a: UBERON:0007245 ! nuclear complex of neuraxis
is_a: UBERON:0019269 ! gray matter of diencephalon
relationship: part_of UBERON:0002105 {source="NIFSTD"} ! vestibulo-auditory system
@@ -33046,7 +33046,7 @@
xref: FMA:62313
xref: GAID:644
xref: HBA:4541
-xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=377 {source="NIFSTD:birnlex_1706"}
+xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=377
xref: http://linkedlifedata.com/resource/umls/id/C0033063
xref: http://linkedlifedata.com/resource/umls/id/C1284641
xref: http://www.snomedbrowser.com/Codes/Details/362382004
@@ -33136,7 +33136,7 @@
xref: FMA:62320
xref: GAID:643
xref: HBA:12905
-xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=387
+xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=387 {source="NIFSTD:birnlex_1407"}
xref: http://en.wikipedia.org/wiki/Paraventricular_nucleus_of_hypothalamus
xref: http://linkedlifedata.com/resource/umls/id/C0030532
xref: http://www.snomedbrowser.com/Codes/Details/369131006
@@ -33167,7 +33167,7 @@
xref: EMAPA:35483
xref: FMA:62326
xref: HBA:4552
-xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=381
+xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=381 {source="NIFSTD:birnlex_1722"}
xref: http://linkedlifedata.com/resource/umls/id/C0175312
xref: http://linkedlifedata.com/resource/umls/id/C1289556
xref: http://www.snomedbrowser.com/Codes/Details/369129002
@@ -33239,7 +33239,7 @@
xref: BAMS:RCh
xref: birnlex:1569
xref: FMA:62330
-xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=396
+xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=396 {source="NIFSTD:birnlex_1569"}
xref: http://linkedlifedata.com/resource/umls/id/C0262326
xref: MA:0000841
xref: MBA:173
@@ -33262,8 +33262,8 @@
synonym: "dorsomedial nucleus of intermediate hypothalamus" EXACT []
synonym: "dorsomedial nucleus of the hypothalamus" RELATED [NeuroNames:397]
synonym: "nucleus dorsomedialis hypothalami" RELATED LATIN [NeuroNames:397]
+synonym: "nucleus dorsomedialis hypothalamicae intermediae" RELATED [BTO:0002474]
synonym: "nucleus dorsomedialis hypothalamicae intermediae" RELATED LATIN [http://en.wikipedia.org/wiki/Dorsomedial_hypothalamic_nucleus]
-synonym: "nucleus dorsomedialis hypothalamicae intermediae" RELATED [BTO:0002474]
synonym: "nucleus hypothalamicus dorsomedialis" RELATED LATIN [NeuroNames:397]
xref: BAMS:DM
xref: BAMS:DMH
@@ -33315,7 +33315,7 @@
xref: FMA:62332
xref: GAID:650
xref: HBA:12919
-xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=398
+xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=398 {source="NIFSTD:birnlex_1572"}
xref: http://en.wikipedia.org/wiki/Ventromedial_hypothalamic_nucleus
xref: http://linkedlifedata.com/resource/umls/id/C0042518
xref: http://www.snomedbrowser.com/Codes/Details/369124007
@@ -33379,7 +33379,7 @@
xref: birnlex:1199
xref: EV:0100234
xref: FMA:62337
-xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1347 {source="NIFSTD:birnlex_1199"}
+xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1347
xref: http://linkedlifedata.com/resource/umls/id/C0086527
xref: http://www.snomedbrowser.com/Codes/Details/360452004
xref: Lateral:hypothalamus
@@ -33442,7 +33442,7 @@
xref: EV:0100238
xref: FMA:62342
xref: HBA:4672
-xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=376
+xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=376 {source="NIFSTD:birnlex_1299"}
xref: http://linkedlifedata.com/resource/umls/id/C0175329
xref: http://linkedlifedata.com/resource/umls/id/C1289568
xref: http://www.snomedbrowser.com/Codes/Details/369141009
@@ -33497,7 +33497,7 @@
xref: EMAPA:35479
xref: FMA:62372
xref: HBA:4524
-xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=295
+xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=295 {source="NIFSTD:birnlex_1438"}
xref: http://linkedlifedata.com/resource/umls/id/C0228390
xref: http://www.snomedbrowser.com/Codes/Details/361538005
xref: MA:0000831
@@ -33532,7 +33532,7 @@
xref: FMA:62373
xref: Habenular:nuclei
xref: HBA:4523
-xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=294 {source="NIFSTD:birnlex_1431"}
+xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=294
xref: http://linkedlifedata.com/resource/umls/id/C0228389
xref: MA:0000832
xref: MBA:483
@@ -33606,7 +33606,7 @@
xref: EMAPA:32778
xref: FMA:62402
xref: HBA:9079
-xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=467
+xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=467 {source="NIFSTD:birnlex_703"}
xref: http://en.wikipedia.org/wiki/Pretectum
xref: http://linkedlifedata.com/resource/umls/id/C0175354
xref: http://www.snomedbrowser.com/Codes/Details/416333003
@@ -33707,7 +33707,7 @@
xref: FMA:62404
xref: GAID:575
xref: HBA:9102
-xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=476
+xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=476 {source="NIFSTD:birnlex_806"}
xref: http://linkedlifedata.com/resource/umls/id/C0228411
xref: Inferior:colliculus
xref: MA:0001067
@@ -33966,7 +33966,7 @@
xref: NCIT:C32374
xref: OpenCyc:Mx4rv3piFJwpEbGdrcN5Y29ycA
xref: PBA:128012244
-xref: UMLS:C0019564 {source="NIFSTD:birnlex_721"}
+xref: UMLS:C0019564 {source="ncithesaurus:Hippocampus"}
xref: VHOG:0001177
is_a: UBERON:0002616 ! regional part of brain
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
@@ -34872,8 +34872,8 @@
subset: pheno_slim
subset: uberon_slim
subset: vertebrate_core
+synonym: "ganglion cervicale superius" RELATED LATIN [http://en.wikipedia.org/wiki/Superior_cervical_ganglion]
synonym: "ganglion cervicale superius" RELATED [BTO:0001325]
-synonym: "ganglion cervicale superius" RELATED LATIN [http://en.wikipedia.org/wiki/Superior_cervical_ganglion]
synonym: "SCG" RELATED ABBREVIATION [ZFA:0001572]
synonym: "superior cervical sympathetic ganglion" EXACT []
synonym: "superior sympathetic cervical ganglion" RELATED []
@@ -34951,8 +34951,8 @@
synonym: "stratum papillare (dermis)" EXACT LATIN [FMA:64776, FMA:TA]
synonym: "stratum papillare corii" EXACT [MP:0009545]
synonym: "stratum papillare dermis" EXACT LATIN [FMA:64776, FMA:TA]
+synonym: "superficial dermis" EXACT [MP:0009545]
synonym: "superficial dermis" EXACT [MA:0000802]
-synonym: "superficial dermis" EXACT [MP:0009545]
xref: EMAPA:35282
xref: FMA:64776
xref: http://linkedlifedata.com/resource/umls/id/C0221930
@@ -35089,7 +35089,7 @@
xref: EHDAA2:0001228
xref: EMAPA:17606
xref: FMA:64803
-xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1900
+xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1900 {source="NIFSTD:birnlex_2703"}
xref: http://linkedlifedata.com/resource/umls/id/C0599332
xref: http://www.snomedbrowser.com/Codes/Details/37623003
xref: MA:0001325
@@ -35694,7 +35694,7 @@
xref: NCIT:C12355
xref: Occipital:lobe
xref: OpenCyc:Mx4rv9OFy5wpEbGdrcN5Y29ycA
-xref: UMLS:C0028785 {source="ncithesaurus:Occipital_Lobe"}
+xref: UMLS:C0028785 {s...
[truncated message content] |
|
From: <cmu...@us...> - 2017-12-02 02:18:48
|
Revision: 5400
http://sourceforge.net/p/obo/svn/5400
Author: cmungall
Date: 2017-12-02 02:18:09 +0000 (Sat, 02 Dec 2017)
Log Message:
-----------
new release
Modified Paths:
--------------
uberon/trunk/basic.obo
uberon/trunk/basic.owl
uberon/trunk/bridge/uberon-bridge-to-aao.obo
uberon/trunk/bridge/uberon-bridge-to-aao.owl
uberon/trunk/bridge/uberon-bridge-to-aeo.obo
uberon/trunk/bridge/uberon-bridge-to-aeo.owl
uberon/trunk/bridge/uberon-bridge-to-bila.obo
uberon/trunk/bridge/uberon-bridge-to-bila.owl
uberon/trunk/bridge/uberon-bridge-to-caro.obo
uberon/trunk/bridge/uberon-bridge-to-caro.owl
uberon/trunk/bridge/uberon-bridge-to-dhba.obo
uberon/trunk/bridge/uberon-bridge-to-dhba.owl
uberon/trunk/bridge/uberon-bridge-to-dmba.obo
uberon/trunk/bridge/uberon-bridge-to-dmba.owl
uberon/trunk/bridge/uberon-bridge-to-efo.obo
uberon/trunk/bridge/uberon-bridge-to-efo.owl
uberon/trunk/bridge/uberon-bridge-to-ehdaa.obo
uberon/trunk/bridge/uberon-bridge-to-ehdaa.owl
uberon/trunk/bridge/uberon-bridge-to-ehdaa2.obo
uberon/trunk/bridge/uberon-bridge-to-ehdaa2.owl
uberon/trunk/bridge/uberon-bridge-to-emapa.obo
uberon/trunk/bridge/uberon-bridge-to-emapa.owl
uberon/trunk/bridge/uberon-bridge-to-fbbt.obo
uberon/trunk/bridge/uberon-bridge-to-fbbt.owl
uberon/trunk/bridge/uberon-bridge-to-fbdv.obo
uberon/trunk/bridge/uberon-bridge-to-fbdv.owl
uberon/trunk/bridge/uberon-bridge-to-fma.obo
uberon/trunk/bridge/uberon-bridge-to-fma.owl
uberon/trunk/bridge/uberon-bridge-to-go.obo
uberon/trunk/bridge/uberon-bridge-to-go.owl
uberon/trunk/bridge/uberon-bridge-to-hao.obo
uberon/trunk/bridge/uberon-bridge-to-hao.owl
uberon/trunk/bridge/uberon-bridge-to-hba.obo
uberon/trunk/bridge/uberon-bridge-to-hba.owl
uberon/trunk/bridge/uberon-bridge-to-ma.obo
uberon/trunk/bridge/uberon-bridge-to-ma.owl
uberon/trunk/bridge/uberon-bridge-to-mba.obo
uberon/trunk/bridge/uberon-bridge-to-mba.owl
uberon/trunk/bridge/uberon-bridge-to-mfo.obo
uberon/trunk/bridge/uberon-bridge-to-mfo.owl
uberon/trunk/bridge/uberon-bridge-to-nifstd.owl
uberon/trunk/bridge/uberon-bridge-to-og.obo
uberon/trunk/bridge/uberon-bridge-to-og.owl
uberon/trunk/bridge/uberon-bridge-to-pba.obo
uberon/trunk/bridge/uberon-bridge-to-pba.owl
uberon/trunk/bridge/uberon-bridge-to-sctid.obo
uberon/trunk/bridge/uberon-bridge-to-sctid.owl
uberon/trunk/bridge/uberon-bridge-to-spd.obo
uberon/trunk/bridge/uberon-bridge-to-spd.owl
uberon/trunk/bridge/uberon-bridge-to-tads.obo
uberon/trunk/bridge/uberon-bridge-to-tads.owl
uberon/trunk/bridge/uberon-bridge-to-tao.obo
uberon/trunk/bridge/uberon-bridge-to-tao.owl
uberon/trunk/bridge/uberon-bridge-to-tgma.obo
uberon/trunk/bridge/uberon-bridge-to-tgma.owl
uberon/trunk/bridge/uberon-bridge-to-vhog.owl
uberon/trunk/bridge/uberon-bridge-to-vsao.obo
uberon/trunk/bridge/uberon-bridge-to-vsao.owl
uberon/trunk/bridge/uberon-bridge-to-wbbt.obo
uberon/trunk/bridge/uberon-bridge-to-wbbt.owl
uberon/trunk/bridge/uberon-bridge-to-wbls.obo
uberon/trunk/bridge/uberon-bridge-to-wbls.owl
uberon/trunk/bridge/uberon-bridge-to-xao.obo
uberon/trunk/bridge/uberon-bridge-to-xao.owl
uberon/trunk/bridge/uberon-bridge-to-zfa.obo
uberon/trunk/bridge/uberon-bridge-to-zfa.owl
uberon/trunk/bridge/uberon-bridge-to-zfs.obo
uberon/trunk/bridge/uberon-bridge-to-zfs.owl
uberon/trunk/chebi_import.owl
uberon/trunk/cl_import.owl
uberon/trunk/composite-metazoan-basic.obo
uberon/trunk/composite-metazoan.obo
uberon/trunk/composite-metazoan.owl
uberon/trunk/composite-vertebrate.obo
uberon/trunk/composite-vertebrate.owl
uberon/trunk/core.obo
uberon/trunk/core.owl
uberon/trunk/depictions.owl
uberon/trunk/diffs/uberon-diff.md
uberon/trunk/ext.obo
uberon/trunk/ext.owl
uberon/trunk/go_import.owl
uberon/trunk/merged.obo
uberon/trunk/merged.owl
uberon/trunk/ncbitaxon_import.owl
uberon/trunk/pato_import.owl
uberon/trunk/pr_import.owl
uberon/trunk/reports/stages-human-report.tsv
uberon/trunk/reports/stages-metazoan-report.tsv
uberon/trunk/reports/stages-mouse-report.tsv
uberon/trunk/reports/stages-xenopus-report.tsv
uberon/trunk/ro_import.owl
uberon/trunk/subsets/amniote-basic.obo
uberon/trunk/subsets/amniote-basic.owl
uberon/trunk/subsets/appendicular-minimal.obo
uberon/trunk/subsets/circulatory-minimal.obo
uberon/trunk/subsets/cranial-minimal.obo
uberon/trunk/subsets/cumbo.obo
uberon/trunk/subsets/cumbo.owl
uberon/trunk/subsets/digestive-minimal.obo
uberon/trunk/subsets/efo-slim.obo
uberon/trunk/subsets/efo-slim.owl
uberon/trunk/subsets/euarchontoglires-basic.obo
uberon/trunk/subsets/euarchontoglires-basic.owl
uberon/trunk/subsets/excretory-minimal.obo
uberon/trunk/subsets/immune-minimal.obo
uberon/trunk/subsets/life-stages-composite.obo
uberon/trunk/subsets/life-stages-core.owl
uberon/trunk/subsets/mouse-view.owl
uberon/trunk/subsets/musculoskeletal-minimal.obo
uberon/trunk/subsets/nervous-minimal.obo
uberon/trunk/subsets/pulmonary-minimal.obo
uberon/trunk/subsets/reproductive-minimal.obo
uberon/trunk/subsets/sensory-minimal.obo
uberon/trunk/subsets/uberon-with-isa-for-FMA-MA-ZFA.obo
uberon/trunk/uberon.obo
uberon/trunk/uberon.owl
Modified: uberon/trunk/basic.obo
===================================================================
--- uberon/trunk/basic.obo 2017-10-29 21:09:12 UTC (rev 5399)
+++ uberon/trunk/basic.obo 2017-12-02 02:18:09 UTC (rev 5400)
@@ -1,6 +1,6 @@
format-version: 1.2
-data-version: uberon/releases/2017-10-29/basic.owl
-date: 29:10:2017 11:12
+data-version: uberon/releases/2017-12-01/basic.owl
+date: 01:12:2017 14:10
saved-by: cjm
subsetdef: cumbo "CUMBO"
subsetdef: cyclostome_subset "cyclostome structures"
@@ -46,7 +46,7 @@
default-namespace: uberon
remark: Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/TEMP>) VersionIRI(<null>))) [Axioms: 437 Logical Axioms: 0]
remark: Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/uberon-bridge-to-bfo.owl>) VersionIRI(<null>))) [Axioms: 20 Logical Axioms: 9]
-remark: Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/uberon/ext.owl>) VersionIRI(<null>))) [Axioms: 25811 Logical Axioms: 4719]
+remark: Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/uberon/ext.owl>) VersionIRI(<null>))) [Axioms: 25837 Logical Axioms: 4725]
remark: Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/uberon/insect-anatomy.owl>) VersionIRI(<null>))) [Axioms: 2098 Logical Axioms: 650]
remark: Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/uberon/reflexivity_axioms.owl>) VersionIRI(<null>))) [Axioms: 2 Logical Axioms: 2]
treat-xrefs-as-equivalent: AEO
@@ -276,7 +276,7 @@
xref: FMA:13889
xref: GAID:457
xref: HBA:4634
-xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=399
+xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=399 {source="NIFSTD:birnlex_1353"}
xref: http://linkedlifedata.com/resource/umls/id/C0032005
xref: http://www.snomedbrowser.com/Codes/Details/181125003
xref: MA:0000176
@@ -287,7 +287,7 @@
xref: OpenCyc:Mx4rv6NQYJwpEbGdrcN5Y29ycA
xref: Pituitary:gland
xref: TAO:0000118
-xref: UMLS:C0032005 {source="ncithesaurus:Pituitary_Gland"}
+xref: UMLS:C0032005 {source="NIFSTD:birnlex_1353"}
xref: VHOG:0000143
xref: XAO:0000017
xref: ZFA:0000118
@@ -294,6 +294,7 @@
is_a: UBERON:0002368 {source="BTO", source="EFO", source="VHOG"} ! endocrine gland
is_a: UBERON:0003296 ! gland of diencephalon
is_a: UBERON:0010133 ! neuroendocrine gland
+is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: immediate_transformation_of UBERON:0034875 {source="BGEE:ANN"} ! future pituitary gland
relationship: part_of UBERON:0001894 {source="MA", source="ZFA"} ! diencephalon
@@ -619,7 +620,7 @@
xref: NCIT:C12401
xref: OpenCyc:Mx8Ngx4rwKSh9pwpEbGdrcN5Y29ycB4rvVil5pwpEbGdrcN5Y29ycB4rvViTvpwpEbGdrcN5Y29ycA
xref: TAO:0000107
-xref: UMLS:C0015392 {source="NIFSTD:birnlex_1169"}
+xref: UMLS:C0015392 {source="ncithesaurus:Eye"}
xref: UMLS:C1280202 {source="NIFSTD:birnlex_1169"}
xref: VHOG:0000275
xref: XAO:0000179
@@ -905,8 +906,8 @@
def: "An ovarian follicle that has one layer of granulosa cells." [GO:0001545, GOC:mtg_mpo, http://ovary.stanford.edu]
subset: pheno_slim
synonym: "folliculus ovaricus primarius" EXACT LATIN [FMA:18634]
+synonym: "ovary primary follicle" EXACT [MA:0002907]
synonym: "ovary primary follicle" EXACT [EMAPA:35631]
-synonym: "ovary primary follicle" EXACT [MA:0002907]
synonym: "preantral follicle of ovary" RELATED []
synonym: "primary egg follicle" RELATED []
synonym: "primary follicle" RELATED [EMAPA:35631]
@@ -1103,8 +1104,8 @@
synonym: "dorsal root ganglion" EXACT [BTO:0001264]
synonym: "DRG" RELATED ABBREVIATION []
synonym: "ganglion of dorsal root" EXACT [OBOL:automatic]
+synonym: "ganglion sensorium nervi spinalis" RELATED [BTO:0001264]
synonym: "ganglion sensorium nervi spinalis" RELATED LATIN [http://en.wikipedia.org/wiki/Dorsal_root_ganglion]
-synonym: "ganglion sensorium nervi spinalis" RELATED [BTO:0001264]
synonym: "ganglion spinale" RELATED [BTO:0001264]
synonym: "ganglion spinalis" EXACT [FMA:5888]
synonym: "posterior root ganglion" RELATED [EMAPA:16668]
@@ -2929,8 +2930,8 @@
synonym: "ovary theca externa" EXACT [MA:0001713]
synonym: "theca externa (folliculus ovaricus tertiarius)" EXACT [FMA:18657]
synonym: "tunica externa of theca folliculi" EXACT [FMA:18657]
+synonym: "tunica externa thecae folliculi" RELATED LATIN [http://en.wikipedia.org/wiki/Theca_externa]
synonym: "tunica externa thecae folliculi" RELATED [BTO:0002852]
-synonym: "tunica externa thecae folliculi" RELATED LATIN [http://en.wikipedia.org/wiki/Theca_externa]
xref: BTO:0002852
xref: FMA:18657
xref: http://www.snomedbrowser.com/Codes/Details/258767003
@@ -4154,8 +4155,8 @@
name: ileal mucosa
def: "A mucosa that is part of a ileum [Automatically generated definition]." [OBOL:automatic]
synonym: "ileal mucous membrane" EXACT [FMA:14956]
+synonym: "ileum mucosa" EXACT [FMA:14956]
synonym: "ileum mucosa" EXACT [OBOL:automatic]
-synonym: "ileum mucosa" EXACT [FMA:14956]
synonym: "ileum mucosa of organ" EXACT [OBOL:automatic]
synonym: "ileum mucous membrane" EXACT [OBOL:automatic]
synonym: "ileum organ mucosa" EXACT [OBOL:automatic]
@@ -4264,8 +4265,8 @@
synonym: "mucous membrane" EXACT [FMA:85355]
synonym: "organ mucosa" EXACT [FMA:85355]
synonym: "region of mucosa" RELATED [FMA:85358]
+synonym: "tunica mucosa" RELATED [BTO:0000886]
synonym: "tunica mucosa" RELATED LATIN [http://en.wikipedia.org/wiki/Mucous_membrane]
-synonym: "tunica mucosa" RELATED [BTO:0000886]
xref: AEO:0000199
xref: BTO:0000886
xref: CALOHA:TS-2031
@@ -4454,8 +4455,8 @@
def: "A mucosa that is part of a pharynx [Automatically generated definition]." [OBOL:automatic]
synonym: "mucosa of organ of pharynx" EXACT [OBOL:automatic]
synonym: "mucosa of pharynx" EXACT [OBOL:automatic]
+synonym: "mucous membrane of pharynx" EXACT [OBOL:automatic]
synonym: "mucous membrane of pharynx" EXACT [FMA:55031]
-synonym: "mucous membrane of pharynx" EXACT [OBOL:automatic]
synonym: "mucous membrane of the pharynx" RELATED [BTO:0001047]
synonym: "organ mucosa of pharynx" EXACT [OBOL:automatic]
synonym: "pharynx mucosa" EXACT [OBOL:automatic]
@@ -5153,8 +5154,8 @@
def: "The longissimus is the muscle lateral to the semispinalis. It is the longest subdivision of the sacrospinalis that extends forward into the transverse processes of the posterior cervical vertebrae. [WP,unvetted]." [http://en.wikipedia.org/wiki/Longissimus]
synonym: "intermediate column of erector spinae" RELATED []
synonym: "longissimus" EXACT [FMA:77178]
+synonym: "musculus longissimus" EXACT LATIN [http://en.wikipedia.org/wiki/Longissimus]
synonym: "musculus longissimus" EXACT [BTO:0001648]
-synonym: "musculus longissimus" EXACT LATIN [http://en.wikipedia.org/wiki/Longissimus]
xref: BTO:0001648
xref: FMA:77178
xref: http://en.wikipedia.org/wiki/Longissimus
@@ -5227,8 +5228,8 @@
def: "An epithelium that is part of a colon [Automatically generated definition]." [OBOL:automatic]
subset: vertebrate_core
synonym: "colon epithelial tissue" EXACT [OBOL:automatic]
+synonym: "colon epithelium" EXACT [FMA:17302]
synonym: "colon epithelium" EXACT [OBOL:automatic]
-synonym: "colon epithelium" EXACT [FMA:17302]
synonym: "epithelial tissue of colon" EXACT [OBOL:automatic]
synonym: "epithelial tissue of large bowel" EXACT [OBOL:automatic]
synonym: "epithelium of colon" EXACT [OBOL:automatic]
@@ -5330,8 +5331,8 @@
def: "The nasal vestibule is the most anterior part of the nasal cavity. It's enclosed by the cartilages of nose and lined by the same epithelium of the skin. The other part of the nasal cavity, which is lined by the respiratory epithelium, is called nasal cavity proper. [WP,unvetted]." [http://en.wikipedia.org/wiki/Nasal_vestibule]
synonym: "vestibular part of nasal cavity" EXACT [FMA:59644]
synonym: "vestibulum nasale" RELATED [BTO:0001761]
+synonym: "vestibulum nasi" RELATED [BTO:0001761]
synonym: "vestibulum nasi" RELATED LATIN [http://en.wikipedia.org/wiki/Nasal_vestibule]
-synonym: "vestibulum nasi" RELATED [BTO:0001761]
xref: BTO:0001761
xref: CALOHA:TS-0660
xref: FMA:59644
@@ -5429,8 +5430,8 @@
synonym: "mucosa of organ of bronchus" EXACT [OBOL:automatic]
synonym: "mucous membrane of bronchi" EXACT [OBOL:automatic]
synonym: "mucous membrane of bronchial trunk" EXACT [OBOL:automatic]
+synonym: "mucous membrane of bronchus" EXACT [OBOL:automatic]
synonym: "mucous membrane of bronchus" EXACT [FMA:62652]
-synonym: "mucous membrane of bronchus" EXACT [OBOL:automatic]
synonym: "organ mucosa of bronchi" EXACT [OBOL:automatic]
synonym: "organ mucosa of bronchial trunk" EXACT [OBOL:automatic]
synonym: "organ mucosa of bronchus" EXACT [OBOL:automatic]
@@ -5534,10 +5535,10 @@
id: UBERON:0000416
name: subdural space
def: "A narrow fluid-containing space, often only a potential space, between the dura mater and the arachnoid." [BTO:0002082, http://en.wikipedia.org/wiki/Subdural_space, http://www.ncbi.nlm.nih.gov/pubmed/8421539]
+synonym: "cavum subdurale" RELATED LATIN [http://en.wikipedia.org/wiki/Subdural_space]
synonym: "cavum subdurale" RELATED [BTO:0002082]
-synonym: "cavum subdurale" RELATED LATIN [http://en.wikipedia.org/wiki/Subdural_space]
+synonym: "spatium subdurale" RELATED LATIN [http://en.wikipedia.org/wiki/Subdural_space]
synonym: "spatium subdurale" RELATED [BTO:0002082]
-synonym: "spatium subdurale" RELATED LATIN [http://en.wikipedia.org/wiki/Subdural_space]
synonym: "subdural cavity" RELATED [BTO:0002082]
synonym: "subdural cleavage" RELATED [BTO:0002082]
synonym: "subdural cleft" RELATED [BTO:0002082]
@@ -6064,6 +6065,7 @@
xref: FMA:70527
is_a: UBERON:0003496 ! head blood vessel
is_a: UBERON:0004573 ! systemic artery
+is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0001532 ! internal carotid artery
[Term]
@@ -6326,7 +6328,6 @@
xref: CARO:0000012
xref: EFO:0002906
xref: EHDAA:1
-xref: EHDAA:9178
xref: EHDAA2:0003103
xref: EHDAA2:0003191
xref: EMAPA:25765
@@ -7453,8 +7454,8 @@
synonym: "pharyngeal branch of inferior vagal ganglion" EXACT [FMA:6234]
synonym: "pharyngeal branch of vagus" EXACT [FMA:6234]
synonym: "ramus pharyngealis nervi vagalis" EXACT [FMA:6234]
+synonym: "ramus pharyngeus" EXACT [FMA:TA]
synonym: "ramus pharyngeus" EXACT LATIN [FMA:6234, FMA:TA]
-synonym: "ramus pharyngeus" EXACT [FMA:TA]
synonym: "ramus pharyngeus nervi vagi" RELATED LATIN [http://en.wikipedia.org/wiki/Pharyngeal_part_of_vagus_nerve]
synonym: "tenth cranial nerve pharyngeal branch" EXACT [FMA:6234]
synonym: "vagal pharyngeal branch" EXACT [FMA:6234]
@@ -7658,7 +7659,7 @@
xref: EMAPA:35695
xref: FMA:62072
xref: HBA:9229
-xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=484 {source="NIFSTD:birnlex_1026"}
+xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=484
xref: http://linkedlifedata.com/resource/umls/id/C0152327
xref: MA:0002743
xref: MBA:158
@@ -7739,7 +7740,7 @@
xref: OpenCyc:Mx4rvVjLm5wpEbGdrcN5Y29ycA
xref: Optic:nerve
xref: TAO:0000435
-xref: UMLS:C0029130 {source="NIFSTD:birnlex_1640"}
+xref: UMLS:C0029130 {source="ncithesaurus:Optic_Nerve"}
xref: VHOG:0000543
xref: XAO:0000188
xref: ZFA:0000435
@@ -8107,7 +8108,7 @@
xref: OpenCyc:Mx4rvVjT65wpEbGdrcN5Y29ycA
xref: PBA:3999
xref: TAO:0000008
-xref: UMLS:C0006104 {source="ncithesaurus:Brain"}
+xref: UMLS:C0006104 {source="NIFSTD:birnlex_796"}
xref: UMLS:C1269537 {source="NIFSTD:birnlex_796"}
xref: VHOG:0000157
xref: XAO:0000010
@@ -8161,7 +8162,7 @@
xref: MIAA:0000108
xref: NCIT:C12443
xref: PBA:128011354
-xref: UMLS:C0007776 {source="ncithesaurus:Cortex"}
+xref: UMLS:C0007776 {source="NIFSTD:birnlex_1494"}
xref: VHOG:0000722
is_a: UBERON:0011215 ! central nervous system cell part cluster
is_a: UBERON:0016548 {source="FMA"} ! central nervous system gray matter layer
@@ -8218,7 +8219,7 @@
xref: FMA:62045
xref: GAID:832
xref: HBA:9310
-xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=459 {source="NIFSTD:birnlex_1416"}
+xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=459
xref: http://linkedlifedata.com/resource/umls/id/C0029126
xref: http://www.snomedbrowser.com/Codes/Details/244453006
xref: MA:0001098
@@ -8430,7 +8431,7 @@
xref: NIFSTD_RETIRED:birnlex_1156
xref: OpenCyc:Mx4rvViTfpwpEbGdrcN5Y29ycA
xref: TAO:0000152
-xref: UMLS:C0035298 {source="ncithesaurus:Retina"}
+xref: UMLS:C0035298 {source="NIFSTD:birnlex_1153"}
xref: UMLS:C1278894 {source="NIFSTD:birnlex_1153"}
xref: VHOG:0000229
xref: XAO:0000009
@@ -8947,7 +8948,7 @@
xref: FMA:67943
xref: GAID:578
xref: HBA:9131
-xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=547 {source="NIFSTD:birnlex_733"}
+xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=547
xref: http://en.wikipedia.org/wiki/Pons
xref: http://linkedlifedata.com/resource/umls/id/C0032639
xref: http://linkedlifedata.com/resource/umls/id/C1280999
@@ -8958,7 +8959,7 @@
xref: MESH:D011149
xref: MIAA:0000115
xref: NCIT:C12511
-xref: UMLS:C0032639 {source="ncithesaurus:Pons_Varolii"}
+xref: UMLS:C0032639 {source="NIFSTD:birnlex_733"}
xref: UMLS:C1280999 {source="NIFSTD:birnlex_733"}
xref: VHOG:0001176
is_a: UBERON:0002616 ! regional part of brain
@@ -9350,8 +9351,8 @@
synonym: "gonecyst" RELATED []
synonym: "seminal gland" BROAD []
synonym: "vas efferens" RELATED []
+synonym: "vesicula seminalis" RELATED [http://en.wikipedia.org/wiki/Seminal_vesicle]
synonym: "vesicula seminalis" RELATED [BTO:0001234]
-synonym: "vesicula seminalis" RELATED [http://en.wikipedia.org/wiki/Seminal_vesicle]
synonym: "vesiculae seminales" RELATED LATIN [http://en.wikipedia.org/wiki/Seminal_vesicle]
synonym: "vesiculae seminales" RELATED [http://en.wikipedia.org/wiki/Seminal_vesicle]
synonym: "vesicular gland" RELATED [http://en.wikipedia.org/wiki/Seminal_vesicle]
@@ -11160,6 +11161,7 @@
xref: VHOG:0000265
xref: XAO:0000345
is_a: UBERON:0005396 {source="MA"} ! carotid artery segment
+is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: develops_from UBERON:0001530 {source="EHDAA2"} ! common carotid artery plus branches
relationship: part_of UBERON:0001530 {source="FMA"} ! common carotid artery plus branches
@@ -13540,8 +13542,8 @@
synonym: "antrum of stomach" EXACT []
synonym: "antrum of Willis" RELATED [BTO:0001732]
synonym: "antrum pylori" RELATED [BTO:0001732]
+synonym: "antrum pyloricum" RELATED [BTO:0001732]
synonym: "antrum pyloricum" RELATED LATIN [http://en.wikipedia.org/wiki/Pyloric_antrum]
-synonym: "antrum pyloricum" RELATED [BTO:0001732]
synonym: "gastric antrum" RELATED [BTO:0001732]
synonym: "stomach antrum" RELATED []
synonym: "stomach pyloric antrum" EXACT []
@@ -13835,8 +13837,8 @@
def: "Anatomical cavity bounded by visceral and parietal peritoneum" [http://en.wikipedia.org/wiki/Peritoneal_cavity, http://orcid.org/0000-0002-6601-2165, https://github.com/obophenotype/uberon/issues/86]
subset: pheno_slim
subset: uberon_slim
+synonym: "cavitas peritonealis" RELATED [BTO:0001782]
synonym: "cavitas peritonealis" RELATED LATIN [http://en.wikipedia.org/wiki/Peritoneal_cavity]
-synonym: "cavitas peritonealis" RELATED [BTO:0001782]
synonym: "saccus serosus peritonei" RELATED LATIN [http://en.wikipedia.org/wiki/Peritoneal_cavity]
xref: BTO:0001782
xref: EHDAA2:0001446
@@ -13860,8 +13862,8 @@
name: superior recess of lesser sac
alt_id: UBERON:0006299
synonym: "omental bursa superior recess" EXACT [MA:0000447]
+synonym: "recessus superior bursae omentalis" EXACT LATIN [FMA:14708, FMA:TA]
synonym: "recessus superior bursae omentalis" EXACT LATIN [FMA:TA]
-synonym: "recessus superior bursae omentalis" EXACT LATIN [FMA:14708, FMA:TA]
synonym: "recessus superior omentalis" EXACT [FMA:14708]
synonym: "superior omental bursa" EXACT [FMA:14708]
synonym: "superior recess" EXACT [EHDAA2:0001958]
@@ -13884,8 +13886,8 @@
synonym: "inferior recess" EXACT [EHDAA2:0000825]
synonym: "inferior recess of omental bursa" EXACT [FMA:14709]
synonym: "omental bursa inferior recess" EXACT [MA:0000446]
+synonym: "recessus inferior bursae omentalis" EXACT LATIN [FMA:14709, FMA:TA]
synonym: "recessus inferior bursae omentalis" EXACT LATIN [FMA:TA]
-synonym: "recessus inferior bursae omentalis" EXACT LATIN [FMA:14709, FMA:TA]
synonym: "recessus inferior omentalis" EXACT [FMA:14709]
xref: EHDAA:6083
xref: EHDAA2:0000825
@@ -16529,8 +16531,8 @@
synonym: "capsular space" EXACT [http://medical-dictionary.thefreedictionary.com/bowman's+space]
synonym: "glomerular capsule space" EXACT [MP:0011499]
synonym: "glomerular urinary space" EXACT [MP:0011499]
+synonym: "inter-glomerular space" EXACT [ZFA:0005312]
synonym: "inter-glomerular space" EXACT [ZFA:0005283]
-synonym: "inter-glomerular space" EXACT [ZFA:0005312]
synonym: "pronephric capsular space" EXACT [ZFA:0005312]
synonym: "renal capsular space" EXACT [ZFA:0005283]
synonym: "urinary space" EXACT []
@@ -17633,8 +17635,8 @@
subset: pheno_slim
subset: uberon_slim
synonym: "male prostatic urethra" EXACT [MP:0011777]
+synonym: "pars prostatica urethrae" EXACT [MP:0011777]
synonym: "pars prostatica urethrae" EXACT LATIN [http://en.wikipedia.org/wiki/Prostatic_urethra]
-synonym: "pars prostatica urethrae" EXACT [MP:0011777]
synonym: "pars prostatica urethrae" RELATED [BTO:0003163]
synonym: "prostatic part of male urethra" EXACT [MP:0011777]
synonym: "prostatic part of urethra" EXACT []
@@ -18200,7 +18202,7 @@
xref: MESH:A12.207.268
xref: NCIT:C12692
xref: TAO:0002184
-xref: UMLS:C0007806 {source="NIFSTD:birnlex_1798"}
+xref: UMLS:C0007806 {source="ncithesaurus:Cerebrospinal_Fluid"}
xref: VHOG:0001278
xref: ZFA:0001626
is_a: UBERON:0007779 {source="Wikipedia"} ! transudate
@@ -18510,8 +18512,8 @@
name: semitendinosus
def: "The semitendinosus is a muscle in the back of the thigh; it is one of the hamstrings. [WP,unvetted]." [http://en.wikipedia.org/wiki/Semitendinosus_muscle]
subset: uberon_slim
+synonym: "musculus semitendinosus" RELATED [BTO:0001236]
synonym: "musculus semitendinosus" RELATED LATIN [http://en.wikipedia.org/wiki/Semitendinosus_muscle]
-synonym: "musculus semitendinosus" RELATED [BTO:0001236]
synonym: "semitendinosus muscle" EXACT []
xref: BTO:0001236
xref: EMAPA:35762
@@ -18530,8 +18532,8 @@
name: tensor fasciae latae muscle
def: "The tensor fasciae latae or tensor fasciæ latæ is a muscle of the thigh. [WP,unvetted]." [http://en.wikipedia.org/wiki/Tensor_fasciae_latae_muscle]
subset: uberon_slim
+synonym: "musculus tensor fasciae latae" EXACT LATIN [http://en.wikipedia.org/wiki/Tensor_fasciae_latae_muscle]
synonym: "musculus tensor fasciae latae" EXACT LATIN [FMA:22423, FMA:TA]
-synonym: "musculus tensor fasciae latae" EXACT LATIN [http://en.wikipedia.org/wiki/Tensor_fasciae_latae_muscle]
synonym: "tensor fasciae lata" EXACT [MA:0002391]
synonym: "tensor fasciae lata muscle" EXACT []
synonym: "tensor fasciae latae" EXACT [FMA:22423]
@@ -18553,8 +18555,8 @@
subset: efo_slim
subset: pheno_slim
subset: uberon_slim
+synonym: "musculus quadriceps femoris" RELATED [BTO:0001149]
synonym: "musculus quadriceps femoris" RELATED LATIN [http://en.wikipedia.org/wiki/Quadriceps_femoris_muscle]
-synonym: "musculus quadriceps femoris" RELATED [BTO:0001149]
synonym: "quadricep muscle" RELATED [BTO:0001149]
synonym: "quadriceps" EXACT []
synonym: "quadriceps femoris muscle" EXACT []
@@ -19763,8 +19765,8 @@
synonym: "hamate" EXACT [MA:0001343]
synonym: "hamate bone" EXACT [FMA:23730]
synonym: "hand distal carpal bone 4" RELATED [MA:0001343]
+synonym: "os hamatum" RELATED [VSAO:0005046]
synonym: "os hamatum" RELATED LATIN [http://en.wikipedia.org/wiki/Hamate_bone]
-synonym: "os hamatum" RELATED [VSAO:0005046]
synonym: "unciform" RELATED [MA:0001343]
synonym: "unciform bone" EXACT [FMA:23730]
synonym: "uncinate" RELATED [MA:0001343]
@@ -20343,8 +20345,8 @@
synonym: "medial cuneiform" EXACT [FMA:24518]
synonym: "medial cuneiform bone" EXACT [FMA:24518]
synonym: "os cuneiform primum" RELATED LATIN [http://en.wikipedia.org/wiki/Medial_cuneiform_bone]
+synonym: "os cuneiforme mediale" EXACT LATIN [FMA:TA]
synonym: "os cuneiforme mediale" EXACT LATIN [NominaAnatomicaVeterinaria:2005]
-synonym: "os cuneiforme mediale" EXACT LATIN [FMA:TA]
synonym: "os cuneiforme mediale" RELATED LATIN [http://en.wikipedia.org/wiki/Medial_cuneiform_bone]
synonym: "os cuneiforme primum" RELATED [BTO:0002360]
synonym: "os tarsale I" EXACT LATIN [NominaAnatomicaVeterinaria:2005]
@@ -20386,8 +20388,8 @@
synonym: "middle cuneiform" EXACT []
synonym: "middle cuneiform bone of foot" EXACT []
synonym: "os cuneiforme intermedium" EXACT LATIN [NominaAnatomicaVeterinaria:2005]
+synonym: "os cuneiforme intermedium" RELATED [BTO:0002359]
synonym: "os cuneiforme intermedium" RELATED LATIN [http://en.wikipedia.org/wiki/Intermediate_cuneiform_bone]
-synonym: "os cuneiforme intermedium" RELATED [BTO:0002359]
synonym: "os cuneiforme secundum" RELATED [BTO:0002359]
synonym: "os cuneiforme secundum" RELATED LATIN [http://en.wikipedia.org/wiki/Intermediate_cuneiform_bone]
synonym: "os tarsale II" EXACT LATIN [NominaAnatomicaVeterinaria:2005]
@@ -20561,6 +20563,7 @@
xref: NCIT:C49481
xref: UMLS:C0222110 {source="ncithesaurus:Ear_Skin"}
is_a: UBERON:0001084 ! skin of head
+is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
intersection_of: UBERON:0000014 ! zone of skin
intersection_of: part_of UBERON:0001691 ! external ear
relationship: part_of UBERON:0001757 ! pinna
@@ -20947,7 +20950,6 @@
subset: uberon_slim
subset: vertebrate_core
synonym: "bone" RELATED [AEO:0000082, BTO:0000140, MA:0001459, VHOG:0001190]
-synonym: "bone element" EXACT [VSAO:0000057]
synonym: "bone organ" EXACT [FMA:5018]
synonym: "bones" RELATED PLURAL [ZFA:0001514]
xref: AAO:0000047
@@ -21399,8 +21401,8 @@
synonym: "auxillery nerve" RELATED [http://en.wikipedia.org/wiki/Axillary_nerve]
synonym: "circumflex humeral nerve" EXACT []
synonym: "circumflex nerve" RELATED [http://en.wikipedia.org/wiki/Axillary_nerve]
+synonym: "nervus axillaris" RELATED [http://en.wikipedia.org/wiki/Axillary_nerve]
synonym: "nervus axillaris" RELATED LATIN [http://en.wikipedia.org/wiki/Axillary_nerve]
-synonym: "nervus axillaris" RELATED [http://en.wikipedia.org/wiki/Axillary_nerve]
xref: Axillary:nerve
xref: EMAPA:18802
xref: FMA:37072
@@ -21492,6 +21494,7 @@
xref: OpenCyc:Mx4rwVFqO5wpEbGdrcN5Y29ycA
xref: UMLS:C0003956 {source="ncithesaurus:Ascending_Aorta"}
is_a: UBERON:0001515 ! thoracic aorta
+is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: develops_from UBERON:0005338 {source="EHDAA2"} ! outflow tract aortic component
[Term]
@@ -21738,6 +21741,7 @@
xref: MA:0000475
xref: VHOG:0001196
is_a: UBERON:0001515 ! thoracic aorta
+is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: develops_from UBERON:0003121 {notes="left arch 4 in human", source="embryology.ch"} ! pharyngeal arch artery 4
[Term]
@@ -21912,8 +21916,8 @@
synonym: "aorta abdominalis" RELATED LATIN [http://en.wikipedia.org/wiki/Abdominal_aorta]
synonym: "descending abdominal aorta" EXACT [FMA:3789]
synonym: "pars abdominalis aortae" EXACT [FMA:3789]
+synonym: "pars abdominalis aortae" RELATED LATIN [http://en.wikipedia.org/wiki/Abdominal_aorta]
synonym: "pars abdominalis aortae" RELATED [BTO:0002976]
-synonym: "pars abdominalis aortae" RELATED LATIN [http://en.wikipedia.org/wiki/Abdominal_aorta]
xref: Abdominal:aorta
xref: BTO:0002976
xref: EFO:0002524
@@ -22210,6 +22214,7 @@
xref: UMLS:C0162859 {source="ncithesaurus:Common_Carotid_Artery"}
xref: VHOG:0000272
is_a: UBERON:0004573 {source="FMA"} ! systemic artery
+is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: develops_from UBERON:0004363 {source="Wikipedia"} ! pharyngeal arch artery
[Term]
@@ -22268,6 +22273,7 @@
xref: ZFA:0005081
is_a: UBERON:0003496 ! head blood vessel
is_a: UBERON:0005396 {source="MA"} ! carotid artery segment
+is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: develops_from UBERON:0004363 {source="Wikipedia"} ! pharyngeal arch artery
relationship: develops_from UBERON:2001053 {source="cjm"} ! future internal carotid artery
relationship: part_of UBERON:0001530 ! common carotid artery plus branches
@@ -22987,8 +22993,8 @@
synonym: "inferior constrictor of pharynx" EXACT [FMA:46623]
synonym: "inferior constrictor pharyngeus" EXACT [FMA:46623]
synonym: "inferior pharyngeal constrictor" RELATED [http://en.wikipedia.org/wiki/Inferior_pharyngeal_constrictor_muscle]
+synonym: "musculus constrictor pharyngis inferior" EXACT LATIN [FMA:TA]
synonym: "musculus constrictor pharyngis inferior" EXACT LATIN [FMA:46623, FMA:TA]
-synonym: "musculus constrictor pharyngis inferior" EXACT LATIN [FMA:TA]
synonym: "musculus constrictor pharyngis inferior" RELATED LATIN [http://en.wikipedia.org/wiki/Inferior_pharyngeal_constrictor_muscle]
xref: EMAPA:18965
xref: FMA:46623
@@ -23126,8 +23132,8 @@
synonym: "craniofacial muscle" RELATED [EMAPA:25133]
synonym: "face muscle" EXACT [FMA:46751]
synonym: "face muscle organ" EXACT [OBOL:automatic]
+synonym: "facial muscle" EXACT [FMA:46751]
synonym: "facial muscle" EXACT [XAO:0001013]
-synonym: "facial muscle" EXACT [FMA:46751]
synonym: "facial muscle proper" EXACT []
synonym: "facial nerve innervated muscle" EXACT [https://orcid.org/0000-0002-6601-2165]
synonym: "facial nerve muscle" EXACT []
@@ -23209,7 +23215,7 @@
xref: FMA:46787
xref: GAID:830
xref: HBA:9300
-xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=32 {source="NIFSTD:birnlex_1319"}
+xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=32
xref: http://linkedlifedata.com/resource/umls/id/C0028938
xref: http://linkedlifedata.com/resource/umls/id/C1268984
xref: http://www.snomedbrowser.com/Codes/Details/180937006
@@ -23320,8 +23326,8 @@
synonym: "precava" RELATED []
synonym: "superior caval vein" EXACT [http://orcid.org/0000-0002-6601-2165]
synonym: "superior vena cava" EXACT [FMA:4720]
+synonym: "vena cava superior" RELATED LATIN [http://en.wikipedia.org/wiki/Superior_vena_cava]
synonym: "vena cava superior" RELATED [BTO:0002683]
-synonym: "vena cava superior" RELATED LATIN [http://en.wikipedia.org/wiki/Superior_vena_cava]
synonym: "vena maxima" RELATED LATIN [http://en.wikipedia.org/wiki/Superior_vena_cava]
xref: BTO:0002683
xref: EHDAA:8726
@@ -23789,6 +23795,7 @@
xref: NCIT:C32315
xref: UMLS:C0559230 {source="ncithesaurus:Ciliary_Muscle"}
is_a: UBERON:0003386 {source="MA"} ! smooth muscle of eye
+is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
is_a: UBERON:0011222 {source="FMA"} ! intra-ocular muscle
relationship: part_of UBERON:0001775 {source="FMA"} ! ciliary body
@@ -23949,6 +23956,7 @@
xref: UMLS:C0226106 {source="ncithesaurus:Sublingual_Artery"}
is_a: UBERON:0003496 ! head blood vessel
is_a: UBERON:0004573 ! systemic artery
+is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0001610 ! lingual artery
[Term]
@@ -24040,6 +24048,7 @@
xref: OpenCyc:Mx4rwDDJ45wpEbGdrcN5Y29ycA
xref: UMLS:C0024949 {source="ncithesaurus:Maxillary_Artery"}
is_a: UBERON:0001637 ! artery
+is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
[Term]
id: UBERON:0001617
@@ -24057,6 +24066,7 @@
xref: UMLS:C0226144 {source="ncithesaurus:Mental_Artery"}
is_a: UBERON:0001637 ! artery
is_a: UBERON:0003496 ! head blood vessel
+is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0014693 ! inferior alveolar artery
[Term]
@@ -24074,6 +24084,7 @@
xref: NCIT:C52847
xref: UMLS:C0226151 {source="ncithesaurus:Buccal_Artery"}
is_a: UBERON:0001637 ! artery
+is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0001616 ! maxillary artery
[Term]
@@ -24100,6 +24111,7 @@
xref: XAO:0000368
is_a: UBERON:0003496 ! head blood vessel
is_a: UBERON:0004573 ! systemic artery
+is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0001532 ! internal carotid artery
[Term]
@@ -24171,6 +24183,7 @@
xref: UMLS:C0226171 {source="ncithesaurus:Lacrimal_Artery"}
is_a: UBERON:0003496 ! head blood vessel
is_a: UBERON:0004573 ! systemic artery
+is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0001619 ! ophthalmic artery
[Term]
@@ -24212,6 +24225,7 @@
xref: UMLS:C0149561 {source="ncithesaurus:Anterior_Cerebral_Artery"}
is_a: UBERON:0003496 ! head blood vessel
is_a: UBERON:0004449 ! cerebral artery
+is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
disjoint_from: UBERON:0001636 {source="lexical"} ! posterior cerebral artery
relationship: part_of UBERON:0001532 ! internal carotid artery
@@ -24274,6 +24288,7 @@
xref: UMLS:C0149566 {source="ncithesaurus:Middle_Cerebral_Artery"}
is_a: UBERON:0003496 ! head blood vessel
is_a: UBERON:0004449 ! cerebral artery
+is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0001532 ! internal carotid artery
[Term]
@@ -24304,6 +24319,7 @@
is_a: UBERON:0003496 ! head blood vessel
is_a: UBERON:0004573 ! systemic artery
is_a: UBERON:0006347 ! communicating artery
+is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
is_a: UBERON:0015212 ! lateral structure
disjoint_from: UBERON:0006764 {source="lexical"} ! anterior communicating artery
relationship: part_of UBERON:0001532 ! internal carotid artery
@@ -24662,6 +24678,7 @@
xref: NCIT:C12515
xref: OpenCyc:Mx4rv9naEJwpEbGdrcN5Y29ycA
xref: UMLS:C0226859 {source="ncithesaurus:Superior_Sagittal_Sinus"}
+is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
is_a: UBERON:0015704 ! sagittal sinus
relationship: develops_from UBERON:0009968 {source="cjm"} ! primitive superior sagittal sinus
@@ -24696,7 +24713,7 @@
xref: FMA:50864
xref: GAID:829
xref: HBA:9316
-xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=488
+xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=488 {source="NIFSTD:birnlex_1646"}
xref: http://linkedlifedata.com/resource/umls/id/C0028864
xref: http://www.snomedbrowser.com/Codes/Details/362456009
xref: MA:0001095
@@ -24808,7 +24825,7 @@
xref: OpenCyc:Mx4rwMF8CJwpEbGdrcN5Y29ycA
xref: TAO:0000697
xref: Trigeminal:nerve
-xref: UMLS:C0040996 {source="NIFSTD:birnlex_869"}
+xref: UMLS:C0040996 {source="ncithesaurus:Trigeminal_Nerve"}
xref: VHOG:0000704
xref: XAO:0003092
xref: ZFA:0000697
@@ -24910,7 +24927,7 @@
xref: NCIT:C12714
xref: OpenCyc:Mx4rvthgEpwpEbGdrcN5Y29ycA
xref: TAO:0000664
-xref: UMLS:C0015462 {source="NIFSTD:birnlex_827"}
+xref: UMLS:C0015462 {source="ncithesaurus:Facial_Nerve"}
xref: VHOG:0000706
xref: XAO:0003094
xref: ZFA:0000664
@@ -24966,7 +24983,7 @@
xref: NCIT:C12996
xref: OpenCyc:Mx4rvVjMFZwpEbGdrcN5Y29ycA
xref: TAO:0000247
-xref: UMLS:C0001162 {source="NIFSTD:birnlex_890"}
+xref: UMLS:C0001162 {source="ncithesaurus:Vestibulocochlear_Nerve"}
xref: UMLS:C1278835 {source="NIFSTD:birnlex_890"}
xref: Vestibulocochlear:nerve
xref: VHOG:0000695
@@ -25017,7 +25034,7 @@
xref: NCIT:C12723
xref: OpenCyc:Mx4rwIr5X5wpEbGdrcN5Y29ycA
xref: TAO:0000668
-xref: UMLS:C0017679 {source="ncithesaurus:Glossopharyngeal_Nerve"}
+xref: UMLS:C0017679 {source="NIFSTD:birnlex_899"}
xref: UMLS:C1305752 {source="NIFSTD:birnlex_899"}
xref: VHOG:0000701
xref: XAO:0003096
@@ -25065,7 +25082,7 @@
xref: MESH:D007002
xref: NCIT:C12732
xref: OpenCyc:Mx4rv9eWA5wpEbGdrcN5Y29ycA
-xref: UMLS:C0020614 {source="ncithesaurus:Hypoglossal_Nerve"}
+xref: UMLS:C0020614 {source="NIFSTD:birnlex_820"}
xref: VHOG:0000693
xref: XAO:0004215
is_a: UBERON:0001785 ! cranial nerve
@@ -25159,6 +25176,7 @@
is_a: UBERON:0003496 ! head blood vessel
is_a: UBERON:0003502 ! neck blood vessel
is_a: UBERON:0009141 ! craniocervical region vein
+is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0008199 ! chin
[Term]
@@ -25288,6 +25306,7 @@
xref: XAO:0004160
is_a: UBERON:0001638 ! vein
is_a: UBERON:0003499 ! brain blood vessel
+is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: fma_set_term FMA:70861
relationship: part_of UBERON:0001893 ! telencephalon
@@ -25555,8 +25574,8 @@
subset: uberon_slim
synonym: "butterfly bone" RELATED [http://en.wikipedia.org/wiki/Sphenoid_bone]
synonym: "os sphenoidale" EXACT LATIN [FMA:52736, FMA:TA]
+synonym: "os sphenoidale" RELATED [http://en.wikipedia.org/wiki/Sphenoid_bone]
synonym: "os sphenoidale" RELATED LATIN [http://en.wikipedia.org/wiki/Sphenoid_bone]
-synonym: "os sphenoidale" RELATED [http://en.wikipedia.org/wiki/Sphenoid_bone]
synonym: "os sphenoidum" RELATED [http://en.wikipedia.org/wiki/Sphenoid_bone]
synonym: "sphenoid" EXACT []
synonym: "sphenoid complex" RELATED []
@@ -25746,8 +25765,8 @@
synonym: "os zygomaticum" EXACT [FMA:52747, FMA:TA]
synonym: "os zygomaticum" RELATED LATIN [http://en.wikipedia.org/wiki/Zygomatic_bone]
synonym: "os zygomaticus" RELATED [http://en.wikipedia.org/wiki/Zygomatic_bone]
+synonym: "zygoma" RELATED [http://en.wikipedia.org/wiki/Zygomatic_bone]
synonym: "zygoma" RELATED [GAID:225]
-synonym: "zygoma" RELATED [http://en.wikipedia.org/wiki/Zygomatic_bone]
synonym: "zygomatic" RELATED []
synonym: "zygomatic bone" EXACT HUMAN_PREFERRED [https://github.com/obophenotype/uberon/issues/121, MA:0001497]
xref: EMAPA:25111
@@ -25778,8 +25797,8 @@
synonym: "lower jaw bone" BROAD SENSU []
synonym: "lower mandibula" NARROW SENSU [http://en.wikipedia.org/wiki/Mandible]
synonym: "mammaliam mandible" EXACT []
+synonym: "mandibula" RELATED LATIN [http://en.wikipedia.org/wiki/Human_mandible]
synonym: "mandibula" RELATED [BTO:0001748]
-synonym: "mandibula" RELATED LATIN [http://en.wikipedia.org/wiki/Human_mandible]
synonym: "mandibular series" RELATED [ZFA:0001273]
synonym: "mandibulla" EXACT []
xref: BTO:0001748
@@ -25811,8 +25830,8 @@
synonym: "hyoid bone" RELATED [http://en.wikipedia.org/wiki/Hyoid_bone]
synonym: "hyoideum" RELATED [http://en.wikipedia.org/wiki/Hyoid_bone]
synonym: "lingual bone" RELATED [http://en.wikipedia.org/wiki/Hyoid_bone]
+synonym: "os hyoideum" RELATED [http://en.wikipedia.org/wiki/Hyoid_bone]
synonym: "os hyoideum" RELATED LATIN [http://en.wikipedia.org/wiki/Hyoid_bone]
-synonym: "os hyoideum" RELATED [http://en.wikipedia.org/wiki/Hyoid_bone]
xref: AAO:0000684
xref: EMAPA:18650
xref: FMA:52749
@@ -26067,6 +26086,7 @@
xref: VHOG:0001152
xref: ZFA:0000472
is_a: UBERON:0002513 ! endochondral bone
+is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
is_a: UBERON:0011164 ! neurocranium bone
is_a: UBERON:0015048 ! basioccipital endochondral element
relationship: develops_from UBERON:0006209 ! basioccipital cartilage element
@@ -26100,6 +26120,7 @@
xref: VHOG:0001151
xref: ZFA:0000661
is_a: UBERON:0002513 {source="ZFA"} ! endochondral bone
+is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
is_a: UBERON:0011164 ! neurocranium bone
is_a: UBERON:0015051 ! exoccipital endochondral element
relationship: develops_from UBERON:0009635 {source="ZFA"} ! parachordal cartilage
@@ -26150,7 +26171,7 @@
synonym: "squamosal bone" EXACT [https://github.com/obophenotype/uberon/issues/122, MA:0001473]
synonym: "squamosum" EXACT []
synonym: "squamous bone" EXACT [https://github.com/obophenotype/uberon/issues/122]
-synonym: "temporal bone squamous part" EXACT [VHOG:0001561]
+synonym: "temporal bone squamous part" EXACT [MP:0004423, VHOG:0001561]
xref: AAO:0000574
xref: EMAPA:18021
xref: FMA:52883
@@ -26263,8 +26284,8 @@
synonym: "ganglion genicularum" EXACT [FMA:53414]
synonym: "ganglion geniculi" RELATED [http://en.wikipedia.org/wiki/Geniculate_ganglion]
synonym: "ganglion geniculi nervi facialis" RELATED LATIN [http://en.wikipedia.org/wiki/Geniculate_ganglion]
+synonym: "genicular ganglion" EXACT [FMA:53414]
synonym: "genicular ganglion" EXACT [http://en.wikipedia.org/wiki/Geniculate_ganglion]
-synonym: "genicular ganglion" EXACT [FMA:53414]
synonym: "geniculate" BROAD [http://en.wikipedia.org/wiki/Geniculate_ganglion]
synonym: "geniculate ganglion" RELATED [MA:0001076]
synonym: "gVII" EXACT [ZFA:0001291]
@@ -26424,8 +26445,8 @@
subset: uberon_slim
synonym: "septal cartilage" RELATED [http://en.wikipedia.org/wiki/Nasal_septum]
synonym: "septum mobile nasi" RELATED [http://en.wikipedia.org/wiki/Nasal_septum]
+synonym: "septum nasi" RELATED [http://en.wikipedia.org/wiki/Nasal_septum]
synonym: "septum nasi" RELATED LATIN [http://en.wikipedia.org/wiki/Nasal_septum]
-synonym: "septum nasi" RELATED [http://en.wikipedia.org/wiki/Nasal_septum]
synonym: "septum of the nose" RELATED [http://en.wikipedia.org/wiki/Nasal_septum]
xref: AAO:0000559
xref: AAO:0010135
@@ -26710,8 +26731,8 @@
synonym: "3" BROAD ABBREVIATION [http://uri.neuinfo.org/nif/nifstd/birnlex_1240, NIFSTD:NeuroNames_abbrevSource]
synonym: "motor nucleus III" RELATED []
synonym: "nIII" RELATED []
+synonym: "nucleus nervi oculomotorii" EXACT LATIN [FMA:54510, FMA:TA]
synonym: "nucleus nervi oculomotorii" EXACT [FMA:TA]
-synonym: "nucleus nervi oculomotorii" EXACT LATIN [FMA:54510, FMA:TA]
synonym: "nucleus oculomotorius" RELATED LATIN [NeuroNames:492]
synonym: "nucleus of oculomotor nerve" EXACT [FMA:54510]
synonym: "nucleus of oculomotor nuclear complex" EXACT [http://orcid.org/0000-0002-6601-2165]
@@ -26733,7 +26754,7 @@
xref: EV:0100250
xref: FMA:54510
xref: HBA:9030
-xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=492 {source="NIFSTD:birnlex_1240"}
+xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=492
xref: http://en.wikipedia.org/wiki/Nucleus_of_oculomotor_nerve
xref: http://linkedlifedata.com/resource/umls/id/C0228686
xref: http://www.snomedbrowser.com/Codes/Details/362457000
@@ -26827,8 +26848,8 @@
subset: pheno_slim
subset: uberon_slim
subset: vertebrate_core
+synonym: "Me5" BROAD ABBREVIATION [http://uri.neuinfo.org/nif/nifstd/birnlex_1010, NIFSTD:NeuroNames_abbrevSource]
synonym: "Me5" BROAD [NIFSTD:birnlex_1010]
-synonym: "Me5" BROAD ABBREVIATION [http://uri.neuinfo.org/nif/nifstd/birnlex_1010, NIFSTD:NeuroNames_abbrevSource]
synonym: "mesencephalic nuclei of trigeminal nerves" RELATED PLURAL [ZFA:0000312]
synonym: "mesencephalic nucleus" BROAD [http://en.wikipedia.org/wiki/Mesencephalic_nucleus_of_trigeminal_nerve]
synonym: "mesencephalic nucleus of the trigeminal" RELATED [BAMS:MEV]
@@ -26887,7 +26908,7 @@
xref: EV:0100292
xref: FMA:54588
xref: HBA:9516
-xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=765 {source="NIFSTD:birnlex_2650"}
+xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=765
xref: http://linkedlifedata.com/resource/umls/id/C0152400
xref: http://linkedlifedata.com/resource/umls/id/C1281211
xref: http://www.snomedbrowser.com/Codes/Details/280184006
@@ -26895,7 +26916,7 @@
xref: MBA:135
xref: NCIT:C12835
xref: Nucleus:ambiguus
-xref: UMLS:C0152400 {source="ncithesaurus:Nucleus_Ambiguus"}
+xref: UMLS:C0152400 {source="NIFSTD:birnlex_2650"}
xref: UMLS:C1281211 {source="NIFSTD:birnlex_2650"}
is_a: UBERON:0007635 ! nucleus of medulla oblongata
is_a: UBERON:0011775 {source="Wikipedia"} ! vagus nerve nucleus
@@ -27087,7 +27108,7 @@
xref: http://www.snomedbrowser.com/Codes/Details/368728006
xref: MA:0001593
xref: NCIT:C33258
-xref: UMLS:C0226964 {source="ncithesaurus:Papilla_of_the_Tongue"}
+xref: UMLS:C0226964 {source="NIFSTD:birnlex_4102"}
xref: UMLS:C1289183 {source="NIFSTD:birnlex_4102"}
is_a: UBERON:0000064 ! organ part
relationship: part_of UBERON:0005020 ! mucosa of tongue
@@ -27690,8 +27711,8 @@
subset: pheno_slim
subset: uberon_slim
subset: vertebrate_core
+synonym: "dentin" EXACT [MA:0002542]
synonym: "dentin" EXACT [ZFA:0005143]
-synonym: "dentin" EXACT [MA:0002542]
synonym: "dentine of tooth" EXACT []
synonym: "predentin" NARROW [GO:0070468]
xref: BTO:0003453
@@ -28014,6 +28035,7 @@
xref: UMLS:C1266928 {source="ncithesaurus:Nasal_Turbinate"}
is_a: UBERON:0002513 ! endochondral bone
is_a: UBERON:0005913 ! zone of bone organ
+is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
is_a: UBERON:0011164 ! neurocranium bone
is_a: UBERON:0035612 ! nasal turbinal
disjoint_from: UBERON:0006203 ! conchal part of pinna
@@ -28081,8 +28103,8 @@
comment: This structure regresses in most males
subset: pheno_slim
subset: uberon_slim
+synonym: "ductus lactiferi" RELATED LATIN [http://en.wikipedia.org/wiki/Lactiferous_duct]
synonym: "ductus lactiferi" RELATED [BTO:0002845]
-synonym: "ductus lactiferi" RELATED LATIN [http://en.wikipedia.org/wiki/Lactiferous_duct]
synonym: "galactophorous duct" RELATED [http://en.wikipedia.org/wiki/Lactiferous_duct]
synonym: "galactophorous tubule" RELATED [BTO:0002845]
synonym: "lactiferous duct" EXACT [FMA:58006]
@@ -28728,7 +28750,7 @@
xref: MA:0001307
xref: MESH:D005584
xref: NCIT:C26463
-xref: UMLS:C0016622 {source="NIFSTD:birnlex_2543"}
+xref: UMLS:C0016622 {source="ncithesaurus:Fovea_Centralis"}
xref: UMLS:C0450290 {source="NIFSTD:birnlex_2543"}
xref: VHOG:0001572
is_a: UBERON:0000064 ! organ part
@@ -29115,8 +29137,8 @@
def: "The chamber in the eyeball enclosing the vitreous humor, bounded anteriorly by the lens and ciliary body and posteriorly by the posterior wall of the eyeball[BTO,modified]." [BTO:0002087]
subset: uberon_slim
synonym: "camera postrema" EXACT [FMA:58848]
+synonym: "camera postrema bulbi oculi" EXACT LATIN [FMA:58848, FMA:TA]
synonym: "camera postrema bulbi oculi" EXACT [FMA:TA]
-synonym: "camera postrema bulbi oculi" EXACT LATIN [FMA:58848, FMA:TA]
synonym: "camera vitrea" EXACT [FMA:58848]
synonym: "camera vitrea bulbi" EXACT [FMA:58848]
synonym: "postremal chamber" EXACT [FMA:58848]
@@ -29295,8 +29317,8 @@
synonym: "ganglion of sympathetic nervous system" EXACT [OBOL:automatic]
synonym: "ganglion of sympathetic part of autonomic division of nervous system" EXACT [OBOL:automatic]
synonym: "ganglion sympatheticum" EXACT []
+synonym: "ganglion sympathicum" RELATED LATIN [http://en.wikipedia.org/wiki/Sympathetic_ganglion]
synonym: "ganglion sympathicum" RELATED [BTO:0001333]
-synonym: "ganglion sympathicum" RELATED LATIN [http://en.wikipedia.org/wiki/Sympathetic_ganglion]
synonym: "sympathetic nervous system ganglion" EXACT [OBOL:automatic]
synonym: "sympathetic part of autonomic division of nervous system ganglion" EXACT [OBOL:automatic]
xref: AAO:0010773
@@ -29941,6 +29963,7 @@
xref: VHOG:0000308
is_a: UBERON:0000409 ! serous gland
is_a: UBERON:0001829 ! major salivary gland
+is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
is_a: UBERON:0012102 ! buccal salivary gland
disjoint_from: UBERON:0013219 ! parotoid gland
relationship: develops_from UBERON:0008801 ! parotid gland primordium
@@ -30370,7 +30393,7 @@
xref: NCIT:C12499
xref: OpenCyc:Mx4rwJ8SsJwpEbGdrcN5Y29ycA
xref: TAO:0000217
-xref: UMLS:C0022889 {source="NIFSTD:birnlex_1196"}
+xref: UMLS:C0022889 {source="ncithesaurus:Internal_Ear"}
xref: UMLS:C1268973 {source="NIFSTD:birnlex_1196"}
xref: VHOG:0000284
xref: XAO:0000192
@@ -30403,6 +30426,7 @@
xref: MA:0002468
xref: NCIT:C32999
xref: UMLS:C0229315 {source="ncithesaurus:Lobule_of_the_Auricle"}
+is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
is_a: UBERON:0034929 ! external soft tissue zone
relationship: part_of UBERON:0001757 ! pinna
@@ -30492,8 +30516,8 @@
subset: pheno_slim
subset: uberon_slim
subset: vertebrate_core
+synonym: "endolympha" RELATED [http://en.wikipedia.org/wiki/Endolymph]
synonym: "endolympha" RELATED LATIN [http://en.wikipedia.org/wiki/Endolymph]
-synonym: "endolympha" RELATED [http://en.wikipedia.org/wiki/Endolymph]
synonym: "endolymphatic fluid" EXACT []
synonym: "Scarpa's fluid" RELATED [http://en.wikipedia.org/wiki/Endolymph]
xref: EMAPA:36548
@@ -30584,8 +30608,8 @@
synonym: "cochlea duct" EXACT [NIFSTD:birnlex_2562]
synonym: "cochlear aqueduct" RELATED []
synonym: "cochlear duct" EXACT []
+synonym: "ductus cochlearis" RELATED LATIN [http://en.wikipedia.org/wiki/Cochlear_duct]
synonym: "ductus cochlearis" RELATED LATIN [BTO:0001692]
-synonym: "ductus cochlearis" RELATED LATIN [http://en.wikipedia.org/wiki/Cochlear_duct]
synonym: "membranous cochlea" RELATED [BTO:0001692]
synonym: "Reissner's canal" EXACT [FMA:61119]
synonym: "Reissners canal" EXACT [NIFSTD:birnlex_2562]
@@ -30608,7 +30632,7 @@
xref: MESH:D003053
xref: NCIT:C32335
xref: UMLS:C1281166 {source="NIFSTD:birnlex_2562"}
-xref: UMLS:C1323110 {source="ncithesaurus:Cochlear_Duct"}
+xref: UMLS:C1323110 {source="NIFSTD:birnlex_2562"}
xref: VHOG:0000507
is_a: UBERON:0000025 ! tube
is_a: UBERON:0004121 ! ectoderm-derived structure
@@ -30949,7 +30973,7 @@
xref: FMA:61825
xref: GAID:635
xref: HBA:4132
-xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=125
+xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=125 {source="NIFSTD:birnlex_1160"}
xref: http://linkedlifedata.com/resource/umls/id/C0039485
xref: http://linkedlifedata.com/resource/umls/id/C1268978
xref: http://www.snomedbrowser.com/Codes/Details/180921000
@@ -30982,7 +31006,7 @@
xref: FMA:61826
xref: GAID:680
xref: HBA:4084
-xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=95
+xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=95 {source="NIFSTD:birnlex_1148"}
xref: http://linkedlifedata.com/resource/umls/id/C0030560
xref: http://www.snomedbrowser.com/Codes/Details/180922007
xref: MAT:0000506
@@ -31031,7 +31055,7 @@
xref: NCIT:C12451
xref: OpenCyc:Mx4rvvyAjJwpEbGdrcN5Y29ycA
xref: PBA:10082
-xref: UMLS:C0007461 {source="NIFSTD:birnlex_1373"}
+xref: UMLS:C0007461 {source="ncithesaurus:Caudate_Nucleus"}
is_a: UBERON:0009663 ! telencephalic nucleus
relationship: part_of UBERON:0000369 {is_redundant="true", source="EHDAA2", source="ncithesaurus"} ! corpus striatum
relationship: part_of UBERON:0002435 {is_redundant="true", source="NIFSTD"} ! striatum
@@ -31106,7 +31130,7 @@
xref: MESH:A08.186.211.730.885.105.487.397
xref: NCIT:C12449
xref: PBA:10097
-xref: UMLS:C0017651 {source="ncithesaurus:Globus_Pallidus"}
+xref: UMLS:C0017651 {source="NIFSTD:birnlex_1234"}
is_a: UBERON:0009663 ! telencephalic nucleus
relationship: develops_from UBERON:0001894 ! diencephalon
relationship: part_of UBERON:0001869 ! cerebral hemisphere
@@ -31129,8 +31153,8 @@
synonym: "amygdaloid nucleus" RELATED [FMA:61841]
synonym: "archistriatum" EXACT []
synonym: "corpus amygdalae" RELATED LATIN [NeuroNames:237]
+synonym: "corpus amygdaloideum" RELATED [BTO:0001042]
synonym: "corpus amygdaloideum" RELATED LATIN [http://en.wikipedia.org/wiki/Amygdala]
-synonym: "corpus amygdaloideum" RELATED [BTO:0001042]
synonym: "nucleus amygdalae" RELATED [BTO:0001042]
xref: BAMS:Amg
xref: BAMS:AMY
@@ -31161,7 +31185,7 @@
xref: NCIT:C12440
xref: OpenCyc:Mx4rwJC_2ZwpEbGdrcN5Y29ycA
xref: PBA:4002
-xref: UMLS:C0002708 {source="NIFSTD:birnlex_1241"}
+xref: UMLS:C0002708 {source="ncithesaurus:Amygdala"}
xref: VHOG:0001277
is_a: UBERON:0002420 {source="FMA"} ! basal ganglion
is_a: UBERON:0005401 ! cerebral hemisphere gray matter
@@ -31244,7 +31268,7 @@
xref: EMAPA:35598
xref: FMA:61882
xref: HBA:4309
-xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=265
+xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=265 {source="NIFSTD:birnlex_719"}
xref: http://en.wikipedia.org/wiki/Nucleus_of_diagonal_band
xref: http://linkedlifedata.com/resource/umls/id/C0175227
xref: MA:0000936
@@ -31290,7 +31314,7 @@
xref: EMAPA:35169
xref: FMA:61884
xref: HBA:4313
-xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=267 {source="NIFSTD:birnlex_724"}
+xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=267
xref: http://linkedlifedata.com/resource/umls/id/C0228365
xref: MA:0000925
xref: MBA:351
@@ -31358,7 +31382,7 @@
xref: FMA:61889
xref: GAID:672
xref: HBA:4290
-xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=277 {source="NIFSTD:birnlex_727"}
+xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=277
xref: http://linkedlifedata.com/resource/umls/id/C0028633
xref: http://www.snomedbrowser.com/Codes/Details/427667007
xref: MA:0000892
@@ -31550,7 +31574,7 @@
xref: MESH:D020772
xref: NCIT:C13082
xref: PBA:10102
-xref: UMLS:C0152341 {source="NIFSTD:birnlex_1659"}
+xref: UMLS:C0152341 {source="ncithesaurus:Internal_Capsule"}
is_a: UBERON:0002437 ! cerebral hemisphere white matter
[Term]
@@ -31566,8 +31590,8 @@
synonym: "lateral olfactory tract. body" RELATED [BAMS:lot]
synonym: "LOT" RELATED ABBREVIATION []
synonym: "olfactory tract" RELATED [NeuroNames:284]
+synonym: "stria olfactoria lateralis" RELATED LATIN [http://en.wikipedia.org/wiki/Lateral_olfactory_stria]
synonym: "stria olfactoria lateralis" RELATED LATIN [NeuroNames:284]
-synonym: "stria olfactoria lateralis" RELATED LATIN [http://en.wikipedia.org/wiki/Lateral_olfactory_stria]
synonym: "tractus olfactorius lateralis" EXACT LATIN [ZFA:0000229]
synonym: "tractus olfactorius lateralis" RELATED LATIN [NeuroNames:284]
xref: BAMS:LDTR
@@ -31810,7 +31834,7 @@
xref: FMA:62001
xref: GAID:618
xref: HBA:4391
-xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=288 {source="NIFSTD:birnlex_1503"}
+xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=288
xref: http://en.wikipedia.org/wiki/Diencephalon
xref: http://linkedlifedata.com/resource/umls/id/C0012144
xref: http://www.snomedbrowser.com/Codes/Details/279328001
@@ -31896,7 +31920,7 @@
xref: EV:0100275
xref: FMA:62004
xref: GAID:590
-xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=698 {source="NIFSTD:birnlex_957"}
+xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=698
xref: http://en.wikipedia.org/wiki/Bone_marrow_of_ovary_oblongata
xref: http://linkedlifedata.com/resource/umls/id/C0025148
xref: http://linkedlifedata.com/resource/umls/id/C1269575
@@ -31950,7 +31974,7 @@
xref: GAID:656
xref: galen:Thalamus
xref: HBA:4392
-xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=300 {source="NIFSTD:birnlex_954"}
+xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=300
xref: http://en.wikipedia.org/wiki/Thalamus
xref: http://linkedlifedata.com/resource/umls/id/C0039729
xref: http://www.snomedbrowser.com/Codes/Details/244433007
@@ -31963,7 +31987,7 @@
xref: OpenCyc:Mx4rwMPQ65wpEbGdrcN5Y29ycA
xref: PBA:128013014
xref: TAO:0001215
-xref: UMLS:C0039729 {source="NIFSTD:birnlex_954"}
+xref: UMLS:C0039729 {source="ncithesaurus:Thalamus"}
xref: VHOG:0000657
xref: ZFA:0001215
is_a: UBERON:0002616 ! regional part of brain
@@ -31998,7 +32022,7 @@
xref: GAID:460
xref: galen:Hypothalamus
xref: HBA:4540
-xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=292
+xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=292 {source="NIFSTD:birnlex_734"}
xref: http://en.wikipedia.org/wiki/Hypothalamus
xref: http://linkedlifedata.com/resource/umls/id/C0020663
xref: http://www.snomedbrowser.com/Codes/Details/264483005
@@ -32062,7 +32086,7 @@
xref: OpenCyc:Mx4rvneLQpwpEbGdrcN5Y29ycA
xref: PBA:128013147
xref: TAO:0000509
-xref: UMLS:C0152361 {source="NIFSTD:birnlex_1710"}
+xref: UMLS:C0152361 {source="ncithesaurus:Epithalamus"}
xref: VHOG:0000178
xref: ZFA:0000509
is_a: UBERON:0002616 ! regional part of brain
@@ -32083,8 +32107,8 @@
synonym: "subthalamic region" EXACT [FMA:62010, NIFSTD:birnlex_708]
synonym: "subthalamus" EXACT [http://en.wikipedia.org/wiki/Thalamus, NIFSTD:birnlex_708]
synonym: "thalamus ventralis" EXACT LATIN [NIFSTD:birnlex_708]
+synonym: "ventral thalamus" EXACT [MA:0000181]
synonym: "ventral thalamus" EXACT [GO:0021539]
-synonym: "ventral thalamus" EXACT [MA:0000181]
xref: BAMS:SbTh
xref: BAMS:Ventral_thalamus
xref: BAMS:VNT
@@ -32261,8 +32285,8 @@
synonym: "epiphysis" RELATED INCONSISTENT [ZFA:0000019]
synonym: "epiphysis cerebri" RELATED [http://en.wikipedia.org/wiki/Epiphysis_cerebri]
synonym: "frontal organ" RELATED [VHOG:0000051]
+synonym: "glandula pinealis" EXACT LATIN [FMA:TA]
synonym: "glandula pinealis" EXACT LATIN [FMA:62033, FMA:TA]
-synonym: "glandula pinealis" EXACT LATIN [FMA:TA]
synonym: "Pi" BROAD ABBREVIATION [http://uri.neuinfo.org/nif/nifstd/birnlex_1184, NIFSTD:NeuroNames_abbrevSource]
synonym: "pineal" RELATED [VHOG:0000051]
synonym: "pineal gland" EXACT [FMA:62033]
@@ -32299,7 +32323,7 @@
xref: OpenCyc:Mx4rv2FMGpwpEbGdrcN5Y29ycA
xref: Pineal:gland
xref: TAO:0000019
-xref: UMLS:C0031939 {source="NIFSTD:birnlex_1184"}
+xref: UMLS:C0031939 {source="ncithesaurus:Pineal_Gland"}
xref: VHOG:0000051
xref: XAO:0000160
xref: ZFA:0000019
@@ -32398,7 +32422,7 @@
xref: FMA:62046
xref: GAID:735
xref: HBA:9309
-xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=460 {source="NIFSTD:birnlex_1684"}
+xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=460
xref: http://linkedlifedata.com/resource/umls/id/C0152405
xref: http://www.snomedbrowser.com/Codes/Details/280952003
xref: MA:0001099
@@ -32407,7 +32431,7 @@
xref: NCIT:C33218
xref: Optic:tract
xref: TAO:0000252
-xref: UMLS:C0152405 {source="ncithesaurus:Optic_Tract"}
+xref: UMLS:C0152405 {source="NIFSTD:birnlex_1684"}
xref: VHOG:0001164
xref: XAO:0004101
xref: ZFA:0000252
@@ -32423,8 +32447,8 @@
subset: uberon_slim
subset: vertebrate_core
synonym: "commissura habenularis" RELATED LATIN [NeuroNames:299]
+synonym: "commissura habenularum" EXACT LATIN [http://en.wikipedia.org/wiki/Habenular_commissure]
synonym: "commissura habenularum" EXACT [ZFA:0000359]
-synonym: "commissura habenularum" EXACT LATIN [http://en.wikipedia.org/wiki/Habenular_commissure]
synonym: "commissure habenularum" EXACT [MP:0008231]
synonym: "habenular commissure (Haller)" RELATED [NeuroNames:299]
synonym: "habenular commisure" RELATED [BAMS:hbc]
@@ -32439,7 +32463,7 @@
xref: FMA:62048
xref: Habenular:commissure
xref: HBA:9227
-xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=299 {source="NIFSTD:birnlex_1609"}
+xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=299
xref: http://linkedlifedata.com/resource/umls/id/C0152363
xref: http://www.snomedbrowser.com/Codes/Details/279335009
xref: MBA:611
@@ -32473,7 +32497,7 @@
xref: FMA:62064
xref: GAID:736
xref: HBA:265505190
-xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?...
[truncated message content] |
|
From: <cmu...@us...> - 2017-10-29 21:09:14
|
Revision: 5399
http://sourceforge.net/p/obo/svn/5399
Author: cmungall
Date: 2017-10-29 21:09:12 +0000 (Sun, 29 Oct 2017)
Log Message:
-----------
new-release
Added Paths:
-----------
uberon/releases/2017-10-28/
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <cmu...@us...> - 2017-10-29 21:07:42
|
Revision: 5398
http://sourceforge.net/p/obo/svn/5398
Author: cmungall
Date: 2017-10-29 21:07:05 +0000 (Sun, 29 Oct 2017)
Log Message:
-----------
new release
Modified Paths:
--------------
uberon/trunk/basic.obo
uberon/trunk/basic.owl
uberon/trunk/bridge/uberon-bridge-to-aao.obo
uberon/trunk/bridge/uberon-bridge-to-aao.owl
uberon/trunk/bridge/uberon-bridge-to-aeo.obo
uberon/trunk/bridge/uberon-bridge-to-aeo.owl
uberon/trunk/bridge/uberon-bridge-to-bila.obo
uberon/trunk/bridge/uberon-bridge-to-bila.owl
uberon/trunk/bridge/uberon-bridge-to-caro.obo
uberon/trunk/bridge/uberon-bridge-to-caro.owl
uberon/trunk/bridge/uberon-bridge-to-dhba.obo
uberon/trunk/bridge/uberon-bridge-to-dhba.owl
uberon/trunk/bridge/uberon-bridge-to-dmba.obo
uberon/trunk/bridge/uberon-bridge-to-dmba.owl
uberon/trunk/bridge/uberon-bridge-to-efo.obo
uberon/trunk/bridge/uberon-bridge-to-efo.owl
uberon/trunk/bridge/uberon-bridge-to-ehdaa.obo
uberon/trunk/bridge/uberon-bridge-to-ehdaa.owl
uberon/trunk/bridge/uberon-bridge-to-ehdaa2.obo
uberon/trunk/bridge/uberon-bridge-to-ehdaa2.owl
uberon/trunk/bridge/uberon-bridge-to-emapa.obo
uberon/trunk/bridge/uberon-bridge-to-emapa.owl
uberon/trunk/bridge/uberon-bridge-to-fbbt.obo
uberon/trunk/bridge/uberon-bridge-to-fbbt.owl
uberon/trunk/bridge/uberon-bridge-to-fbdv.obo
uberon/trunk/bridge/uberon-bridge-to-fbdv.owl
uberon/trunk/bridge/uberon-bridge-to-fma.obo
uberon/trunk/bridge/uberon-bridge-to-fma.owl
uberon/trunk/bridge/uberon-bridge-to-go.obo
uberon/trunk/bridge/uberon-bridge-to-go.owl
uberon/trunk/bridge/uberon-bridge-to-hao.obo
uberon/trunk/bridge/uberon-bridge-to-hao.owl
uberon/trunk/bridge/uberon-bridge-to-hba.obo
uberon/trunk/bridge/uberon-bridge-to-hba.owl
uberon/trunk/bridge/uberon-bridge-to-ma.obo
uberon/trunk/bridge/uberon-bridge-to-ma.owl
uberon/trunk/bridge/uberon-bridge-to-mba.obo
uberon/trunk/bridge/uberon-bridge-to-mba.owl
uberon/trunk/bridge/uberon-bridge-to-mfo.obo
uberon/trunk/bridge/uberon-bridge-to-mfo.owl
uberon/trunk/bridge/uberon-bridge-to-nifstd.obo
uberon/trunk/bridge/uberon-bridge-to-nifstd.owl
uberon/trunk/bridge/uberon-bridge-to-og.obo
uberon/trunk/bridge/uberon-bridge-to-og.owl
uberon/trunk/bridge/uberon-bridge-to-pba.obo
uberon/trunk/bridge/uberon-bridge-to-pba.owl
uberon/trunk/bridge/uberon-bridge-to-sctid.obo
uberon/trunk/bridge/uberon-bridge-to-sctid.owl
uberon/trunk/bridge/uberon-bridge-to-spd.obo
uberon/trunk/bridge/uberon-bridge-to-spd.owl
uberon/trunk/bridge/uberon-bridge-to-tads.obo
uberon/trunk/bridge/uberon-bridge-to-tads.owl
uberon/trunk/bridge/uberon-bridge-to-tao.obo
uberon/trunk/bridge/uberon-bridge-to-tao.owl
uberon/trunk/bridge/uberon-bridge-to-tgma.obo
uberon/trunk/bridge/uberon-bridge-to-tgma.owl
uberon/trunk/bridge/uberon-bridge-to-vsao.obo
uberon/trunk/bridge/uberon-bridge-to-vsao.owl
uberon/trunk/bridge/uberon-bridge-to-wbbt.obo
uberon/trunk/bridge/uberon-bridge-to-wbbt.owl
uberon/trunk/bridge/uberon-bridge-to-wbls.obo
uberon/trunk/bridge/uberon-bridge-to-wbls.owl
uberon/trunk/bridge/uberon-bridge-to-xao.obo
uberon/trunk/bridge/uberon-bridge-to-xao.owl
uberon/trunk/bridge/uberon-bridge-to-zfa.obo
uberon/trunk/bridge/uberon-bridge-to-zfa.owl
uberon/trunk/bridge/uberon-bridge-to-zfs.obo
uberon/trunk/bridge/uberon-bridge-to-zfs.owl
uberon/trunk/chebi_import.owl
uberon/trunk/cl_import.owl
uberon/trunk/composite-metazoan-basic.obo
uberon/trunk/composite-metazoan.obo
uberon/trunk/composite-metazoan.owl
uberon/trunk/composite-vertebrate.obo
uberon/trunk/composite-vertebrate.owl
uberon/trunk/core.obo
uberon/trunk/core.owl
uberon/trunk/diffs/uberon-diff.md
uberon/trunk/ext.obo
uberon/trunk/ext.owl
uberon/trunk/go_import.owl
uberon/trunk/merged.obo
uberon/trunk/merged.owl
uberon/trunk/ncbitaxon_import.owl
uberon/trunk/pato_import.owl
uberon/trunk/pr_import.owl
uberon/trunk/reports/stages-human-report.tsv
uberon/trunk/reports/stages-metazoan-report.tsv
uberon/trunk/reports/stages-mouse-report.tsv
uberon/trunk/reports/stages-xenopus-report.tsv
uberon/trunk/ro_import.owl
uberon/trunk/subsets/amniote-basic.obo
uberon/trunk/subsets/amniote-basic.owl
uberon/trunk/subsets/circulatory-minimal.obo
uberon/trunk/subsets/cranial-minimal.obo
uberon/trunk/subsets/cumbo.obo
uberon/trunk/subsets/digestive-minimal.obo
uberon/trunk/subsets/efo-slim.obo
uberon/trunk/subsets/efo-slim.owl
uberon/trunk/subsets/euarchontoglires-basic.obo
uberon/trunk/subsets/euarchontoglires-basic.owl
uberon/trunk/subsets/immune-minimal.obo
uberon/trunk/subsets/mouse-view.owl
uberon/trunk/subsets/musculoskeletal-minimal.obo
uberon/trunk/subsets/nervous-minimal.obo
uberon/trunk/subsets/pulmonary-minimal.obo
uberon/trunk/subsets/reproductive-minimal.obo
uberon/trunk/subsets/sensory-minimal.obo
uberon/trunk/subsets/uberon-with-isa-for-FMA-MA-ZFA.obo
uberon/trunk/uberon.obo
uberon/trunk/uberon.owl
Modified: uberon/trunk/basic.obo
===================================================================
--- uberon/trunk/basic.obo 2017-09-10 17:36:10 UTC (rev 5397)
+++ uberon/trunk/basic.obo 2017-10-29 21:07:05 UTC (rev 5398)
@@ -1,6 +1,6 @@
format-version: 1.2
-data-version: uberon/releases/2017-09-09/basic.owl
-date: 09:09:2017 20:10
+data-version: uberon/releases/2017-10-29/basic.owl
+date: 29:10:2017 11:12
saved-by: cjm
subsetdef: cumbo "CUMBO"
subsetdef: cyclostome_subset "cyclostome structures"
@@ -46,7 +46,7 @@
default-namespace: uberon
remark: Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/TEMP>) VersionIRI(<null>))) [Axioms: 437 Logical Axioms: 0]
remark: Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/uberon-bridge-to-bfo.owl>) VersionIRI(<null>))) [Axioms: 20 Logical Axioms: 9]
-remark: Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/uberon/ext.owl>) VersionIRI(<null>))) [Axioms: 25806 Logical Axioms: 4720]
+remark: Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/uberon/ext.owl>) VersionIRI(<null>))) [Axioms: 25811 Logical Axioms: 4719]
remark: Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/uberon/insect-anatomy.owl>) VersionIRI(<null>))) [Axioms: 2098 Logical Axioms: 650]
remark: Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/uberon/reflexivity_axioms.owl>) VersionIRI(<null>))) [Axioms: 2 Logical Axioms: 2]
treat-xrefs-as-equivalent: AEO
@@ -799,6 +799,7 @@
xref: VHOG:0001273
xref: ZFA_RETIRED:0005318
is_a: UBERON:0005057 ! immune organ
+relationship: develops_from UBERON:0034953 ! embryonic lymph sac
relationship: part_of UBERON:0002465 ! lymphoid system
[Term]
@@ -3329,7 +3330,6 @@
id: UBERON:0000175
name: pleural effusion
def: "Pleural effusion is a bodily fluid that is produced in exess and accumulates in the pleural cavity, the fluid-filled space that surrounds the lungs. Excessive amounts of such fluid can impair breathing by limiting the expansion of the lungs during inhalation." [ENVO:02000033]
-comment: Editor noyes: cede to MPATH? Note the ncit class is under finding.
xref: ENVO:02000033
xref: ncithesaurus:Pleural_Effusion
xref: OpenCyc:Mx4rLaTGCK2TEduAAAAOpmP6tw
@@ -3473,6 +3473,7 @@
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
is_a: UBERON:0034768 ! morphological feature
+relationship: dubious_for_taxon NCBITaxon:10088
relationship: fma_set_term FMA:72015
relationship: part_of UBERON:0001869 ! cerebral hemisphere
property_value: dc-contributor https://github.com/cmungall
@@ -6310,12 +6311,12 @@
subset: uberon_slim
subset: upper_level
synonym: "animal" NARROW [BTO:0000042]
-synonym: "body" RELATED []
+synonym: "body" RELATED [AEO:0000103, FMA:256135, http://uri.neuinfo.org/nif/nifstd/birnlex_18, NCIT:C13041]
synonym: "Koerper" RELATED [BTO:0001489]
synonym: "multi-cellular organism" EXACT [CARO:0000012]
-synonym: "organism" EXACT []
+synonym: "organism" BROAD [FBbt:00000001, VHOG:0000671, WBbt:0007833]
synonym: "whole body" RELATED [BTO:0001489]
-synonym: "whole organism" EXACT []
+synonym: "whole organism" RELATED [FBbt:00000001]
xref: AAO:0010026
xref: AEO:0000191
xref: BILA:0000012
@@ -16370,7 +16371,6 @@
is_a: UBERON:0004119 ! endoderm-derived structure
intersection_of: UBERON:0000353 ! parenchyma
intersection_of: part_of UBERON:0002107 ! liver
-relationship: develops_from UBERON:0005171 {source="EHDAA2"} ! hepatic duct
relationship: develops_from UBERON:0008835 {source="XAO"} ! hepatic diverticulum
relationship: part_of UBERON:0002107 ! liver
@@ -17804,7 +17804,7 @@
[Term]
id: UBERON:0001343
name: seminiferous tubule of testis
-def: "the tubules in the testes where spermatogenesis occurs" [ISBN:0-683-40008-8, MGI:csmith, MP:0002216]
+def: "The tubules in the testes where spermatogenesis occurs." [https://github.com/obophenotype/uberon/issues/1381, ISBN:0-683-40008-8, MGI:csmith, MP:0002216]
subset: efo_slim
subset: pheno_slim
subset: uberon_slim
@@ -18465,7 +18465,6 @@
id: UBERON:0001373
name: sartorius muscle
def: "The Sartorius muscle - the longest muscle in the human body - is a long thin muscle that runs down the length of the thigh. Its upper portion forms the lateral border of the femoral triangle." [http://en.wikipedia.org/wiki/Sartorius_muscle]
-comment: . We do NOT group this AAO class here at this stage until further evidence of shared attachments
subset: uberon_slim
synonym: "ambliens" RELATED SENSU []
synonym: "M. sartorius" RELATED []
@@ -34337,6 +34336,7 @@
xref: MESH:D001646
xref: NCIT:C13192
xref: UMLS:C0005388 {source="ncithesaurus:Bile"}
+xref: ZFA:0005857
is_a: UBERON:0000456 ! secretion of exocrine gland
is_a: UBERON:0006314 ! bodily fluid
@@ -34751,7 +34751,7 @@
id: UBERON:0001987
name: placenta
def: "organ of metabolic interchange between fetus and mother, partly of embryonic origin and partly of maternal origin[GO]. The fetal portion of the placenta is known as the villous chorion. The maternal portion is known as the decidua basalis. The two portions are held together by anchoring villi that are anchored to the decidua basalis by the cytotrophoblastic shell." [http://en.wikipedia.org/wiki/Placenta, http://www.med.umich.edu/lrc/coursepages/m1/embryology/embryo/06placenta.htm]
-comment: Marsupials possess only a rudimentary placenta, with reduced nutrient and oxygen exchanging capabilities.
+comment: Marsupials possess only a rudimentary yolk-type placenta, with reduced nutrient and oxygen exchanging capabilities.
subset: efo_slim
subset: organ_slim
subset: pheno_slim
@@ -48743,9 +48743,9 @@
xref: MESH:D010046
xref: NCIT:C32593
xref: Oval:window
-is_a: UBERON:0000161 ! orifice
is_a: UBERON:0010313 ! neural crest-derived structure
is_a: UBERON:0013685 ! foramen of skull
+is_a: UBERON:0036253 ! orifice of skull
relationship: part_of UBERON:0001694 ! petrous part of temporal bone
[Term]
@@ -48767,9 +48767,9 @@
xref: MESH:D012405
xref: NCIT:C32594
xref: Round:window
-is_a: UBERON:0000161 ! orifice
is_a: UBERON:0010313 ! neural crest-derived structure
is_a: UBERON:0013685 ! foramen of skull
+is_a: UBERON:0036253 ! orifice of skull
relationship: part_of UBERON:0001694 ! petrous part of temporal bone
[Term]
@@ -52031,9 +52031,7 @@
xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=783 {source="NIFSTD:birnlex_1257"}
xref: http://linkedlifedata.com/resource/umls/id/C0228537
xref: UMLS:C0228537 {source="NIFSTD:birnlex_1257"}
-is_a: UBERON:0003045 ! dorsal longitudinal fasciculus
-intersection_of: UBERON:0003045 ! dorsal longitudinal fasciculus
-intersection_of: part_of UBERON:0001896 ! medulla oblongata
+is_a: UBERON:0005838 {source="FMA"} ! fasciculus of brain
relationship: part_of UBERON:0001896 ! medulla oblongata
[Term]
@@ -52326,11 +52324,12 @@
xref: FMA:72461
xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=533
xref: http://linkedlifedata.com/resource/umls/id/C0175406
+xref: http://www.snomedbrowser.com/Codes/Details/361568001
xref: UMLS:C0175406 {source="NIFSTD:birnlex_1296"}
-is_a: UBERON:0003002 ! medial lemniscus
-intersection_of: UBERON:0003002 ! medial lemniscus
-intersection_of: part_of UBERON:0001891 ! midbrain
-relationship: part_of UBERON:0001943 ! midbrain tegmentum
+is_a: UBERON:0003001 {source="FMA"} ! nervous system lemniscus
+relationship: part_of UBERON:0001943 {source="FMA"} ! midbrain tegmentum
+relationship: part_of UBERON:0002623 {source="NIFSTD"} ! cerebral peduncle
+relationship: part_of UBERON:0003002 {source="NIFSTD"} ! medial lemniscus
[Term]
id: UBERON:0002659
@@ -54654,10 +54653,9 @@
xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=787
xref: http://linkedlifedata.com/resource/umls/id/C0228534
xref: UMLS:C0228534 {source="NIFSTD:birnlex_1570"}
-is_a: UBERON:0003002 ! medial lemniscus
-intersection_of: UBERON:0003002 ! medial lemniscus
-intersection_of: part_of UBERON:0001896 ! medulla oblongata
-relationship: part_of UBERON:0001896 ! medulla oblongata
+is_a: UBERON:0003001 {source="FMA"} ! nervous system lemniscus
+relationship: part_of UBERON:0001896 {source="FMA", source="NIFSTD"} ! medulla oblongata
+relationship: part_of UBERON:0003002 {source="NIFSTD"} ! medial lemniscus
[Term]
id: UBERON:0002749
@@ -55716,10 +55714,9 @@
xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=599 {source="NIFSTD:birnlex_1707"}
xref: http://linkedlifedata.com/resource/umls/id/C0262223
xref: UMLS:C0262223 {source="NIFSTD:birnlex_1707"}
-is_a: UBERON:0003045 ! dorsal longitudinal fasciculus
-intersection_of: UBERON:0003045 ! dorsal longitudinal fasciculus
-intersection_of: part_of UBERON:0000988 ! pons
+is_a: UBERON:0005838 {source="FMA"} ! fasciculus of brain
relationship: part_of UBERON:0000988 ! pons
+relationship: part_of UBERON:0003045 {source="NIFSTD"} ! dorsal longitudinal fasciculus
[Term]
id: UBERON:0002794
@@ -55834,7 +55831,7 @@
xref: UMLS:C0175459 {source="NIFSTD:birnlex_1718"}
is_a: UBERON:0004171 ! trigeminothalamic tract
is_a: UBERON:0007702 ! tract of brain
-relationship: part_of UBERON:0003023 {source="FMA"} ! pontine tegmentum
+relationship: part_of UBERON:0003023 {source="FMA", source="NIFSTD"} ! pontine tegmentum
[Term]
id: UBERON:0002798
@@ -56223,21 +56220,19 @@
name: zona arcuata of basilar membrane of cochlea
alt_id: UBERON:0002821
alt_id: UBERON:0031464
-def: "The inner part of the basilar membrane of the cochlea that supports the spiral organ of Corti." [http://en.wikipedia.org/wiki/Inner_tunnel]
+def: "The inner part of the basilar membrane of the cochlea that supports the spiral organ of Corti." [http://en.wikipedia.org/wiki/Inner_tunnel, https://github.com/obophenotype/uberon/issues/1357]
+synonym: "arcuate zone of basilar membrane" EXACT []
+synonym: "arcuate zone of organ of corti" EXACT []
synonym: "basilar membrane of cochlea, zona arcuata" EXACT []
synonym: "inner tunnel" BROAD [http://en.wikipedia.org/wiki/Inner_tunnel]
synonym: "zona arcuata" BROAD [http://en.wikipedia.org/wiki/Inner_tunnel]
xref: birnlex:2528
-xref: birnlex:2529
xref: FMA:75709
xref: http://linkedlifedata.com/resource/umls/id/C1184862
-xref: http://linkedlifedata.com/resource/umls/id/C1184863
+xref: http://www.snomedbrowser.com/Codes/Details/368961005
xref: Inner:tunnel
xref: UMLS:C1184862 {source="NIFSTD:birnlex_2528"}
-is_a: UBERON:0004121 ! ectoderm-derived structure
-is_a: UBERON:0005764 ! acellular membrane
-is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
-relationship: part_of UBERON:0002226 ! basilar membrane of cochlea
+is_a: UBERON:0036250 ! zone of basilar membrane of cochlea
[Term]
id: UBERON:0002822
@@ -59184,11 +59179,11 @@
xref: FMA:72503
xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=610 {source="NIFSTD:birnlex_781"}
xref: http://linkedlifedata.com/resource/umls/id/C0228439
+xref: http://www.snomedbrowser.com/Codes/Details/361572002
xref: UMLS:C0228439 {source="NIFSTD:birnlex_781"}
-is_a: UBERON:0003002 ! medial lemniscus
-intersection_of: UBERON:0003002 ! medial lemniscus
-intersection_of: part_of UBERON:0000988 ! pons
-relationship: part_of UBERON:0000988 ! pons
+is_a: UBERON:0003001 {source="FMA"} ! nervous system lemniscus
+relationship: part_of UBERON:0003002 {source="FMA", source="NIFSTD"} ! medial lemniscus
+relationship: part_of UBERON:0003023 {source="FMA"} ! pontine tegmentum
[Term]
id: UBERON:0002959
@@ -60150,7 +60145,6 @@
synonym: "lemniscus" EXACT [FMA:83676, http://uri.neuinfo.org/nif/nifstd/birnlex_881]
synonym: "neuraxis lemniscus" EXACT [FMA:83676]
xref: birnlex:881
-xref: FMA:76742
xref: FMA:83676
xref: Lemniscus:(anatomy)
is_a: UBERON:0000122 ! neuron projection bundle
@@ -60244,10 +60238,9 @@
xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=525 {source="NIFSTD:birnlex_893"}
xref: http://linkedlifedata.com/resource/umls/id/C0262222
xref: UMLS:C0262222 {source="NIFSTD:birnlex_893"}
-is_a: UBERON:0003045 ! dorsal longitudinal fasciculus
-intersection_of: UBERON:0003045 ! dorsal longitudinal fasciculus
-intersection_of: part_of UBERON:0001891 ! midbrain
-relationship: part_of UBERON:0001943 ! midbrain tegmentum
+is_a: UBERON:0005838 {source="FMA"} ! fasciculus of brain
+relationship: part_of UBERON:0001943 {source="FMA"} ! midbrain tegmentum
+relationship: part_of UBERON:0003045 {source="NIFSTD"} ! dorsal longitudinal fasciculus
[Term]
id: UBERON:0003006
@@ -60307,10 +60300,9 @@
xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=432
xref: http://linkedlifedata.com/resource/umls/id/C0262221
xref: UMLS:C0262221 {source="NIFSTD:birnlex_898"}
-is_a: UBERON:0003045 ! dorsal longitudinal fasciculus
-intersection_of: UBERON:0003045 ! dorsal longitudinal fasciculus
-intersection_of: part_of UBERON:0001898 ! hypothalamus
-relationship: part_of UBERON:0002430 ! lateral hypothalamic area
+is_a: UBERON:0005838 ! fasciculus of brain
+relationship: part_of UBERON:0002430 {source="FMA"} ! lateral hypothalamic area
+relationship: part_of UBERON:0003045 {source="NIFSTD"} ! dorsal longitudinal fasciculus
[Term]
id: UBERON:0003009
@@ -76540,6 +76532,7 @@
xref: ZFA:0005572
is_a: UBERON:0003104 ! mesenchyme
is_a: UBERON:0004121 ! ectoderm-derived structure
+is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0010312 ! immature eye
[Term]
@@ -87858,6 +87851,7 @@
xref: VHOG:0000545
xref: XAO:0000277
is_a: UBERON:0010425 ! internal naris
+is_a: UBERON:0036253 ! orifice of skull
relationship: part_of UBERON:0003128 ! cranium
[Term]
@@ -93122,7 +93116,7 @@
is_a: UBERON:0004120 ! mesoderm-derived structure
intersection_of: UBERON:0001285 ! nephron
intersection_of: part_of UBERON:0000081 ! metanephros
-relationship: develops_from UBERON:0003220 {source="Wikipedia"} ! metanephric mesenchyme
+relationship: develops_from UBERON:0003220 {source="http://en.wikipedia.org/wiki/Nephron"} ! metanephric mesenchyme
relationship: immediate_transformation_of UBERON:0010535 {source="Bgee:AN"} ! primitive metanephric nephron
relationship: part_of UBERON:0000081 ! metanephros
@@ -97666,12 +97660,13 @@
[Term]
id: UBERON:0005435
-name: cisterna chyli
+name: upper part of cisterna chyli
def: "A dilated sac at the lower end of the thoracic duct into which lymph from the intestinal trunk and two lumbar lymphatic trunks flow." [http://en.wikipedia.org/wiki/Cisterna_chyli]
synonym: "atypical confluence of lymph trunks" EXACT [FMA:5835]
synonym: "chyle cistern" EXACT [FMA:5835]
synonym: "chyle cistern" RELATED [http://en.wikipedia.org/wiki/Cisterna_chyli]
synonym: "cistern of Pecquet" EXACT [FMA:5835]
+synonym: "cisterna chyli" EXACT [FMA:5835]
synonym: "cysterna chyli" RELATED LATIN [http://en.wikipedia.org/wiki/Cisterna_chyli]
synonym: "receptaculum chyli" RELATED LATIN [http://en.wikipedia.org/wiki/Cisterna_chyli]
xref: Cisterna:chyli
@@ -97685,6 +97680,7 @@
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0009856 ! sac
is_a: UBERON:0034944 ! zone of organ
+relationship: develops_from UBERON:0036260 ! embryonic cisterna chyli
relationship: part_of UBERON:0001631 ! thoracic duct
[Term]
@@ -98760,7 +98756,7 @@
[Term]
id: UBERON:0005497
name: non-neural ectoderm
-comment: Gene notes: One of the first genes to be expressed in nonneural ectoderm in amphioxus is BMP2/4 (Panopoulou et al. 1998). BMP2/4 homologues appear to have a very ancient role in distinguishing neural from nonneural ectoderm; in Drosophila as well as in amphioxus and vertebrates, BMP2/4 homologues are expressed in nonneural ectoderm and function in distinguishing neural from nonneural ectoderm (Francois & Bier, 1995 ; Sasai et al. 1995 ; Wilson & Hemmati-Brivanlou, 1995; Panopoulou et al. 1998). A change in level of BMP2/4 from very high in nonneural ectoderm to low in neural ectoderm appears to be a key factor in development of neural crest (Baker & Bronner-Fraser,1997a,1997b;Erickson&Reedy,1998;Marchantet al.1998 ;Selleck et al. 1998). Editor note: todo - epidermis? todo - track down EHDAA2 class in new release
+comment: Gene notes: One of the first genes to be expressed in nonneural ectoderm in amphioxus is BMP2/4 (Panopoulou et al. 1998). BMP2/4 homologues appear to have a very ancient role in distinguishing neural from nonneural ectoderm; in Drosophila as well as in amphioxus and vertebrates, BMP2/4 homologues are expressed in nonneural ectoderm and function in distinguishing neural from nonneural ectoderm (Francois & Bier, 1995 ; Sasai et al. 1995 ; Wilson & Hemmati-Brivanlou, 1995; Panopoulou et al. 1998). A change in level of BMP2/4 from very high in nonneural ectoderm to low in neural ectoderm appears to be a key factor in development of neural crest (Baker & Bronner-Fraser,1997a,1997b;Erickson&Reedy,1998;Marchantet al.1998 ;Selleck et al. 1998).
subset: efo_slim
subset: vertebrate_core
synonym: "epidermal ectoderm" NARROW [https://github.com/obophenotype/uberon/wiki/The-neural-crest]
@@ -103859,6 +103855,7 @@
[Term]
id: UBERON:0006012
name: interdigital region
+def: "Anatomical region connecting two digits." [UBERON:cjm]
subset: pheno_slim
synonym: "interdigit" RELATED [BTO:0004670]
synonym: "interdigit region" EXACT []
@@ -103865,7 +103862,7 @@
xref: BTO:0004670
xref: EMAPA:32618
xref: MA:0003012
-xref: NCIT:C106201
+xref: XAO:0004316
is_a: UBERON:0010858 ! inter limb-segment region
relationship: part_of UBERON:0002470 ! autopod region
@@ -119955,7 +119952,6 @@
name: chin
def: "A subdivision of the face that is the anteriormost part of the lower jaw region." [http://en.wikipedia.org/wiki/Chin, TAO:0002254]
subset: pheno_slim
-synonym: "chins" RELATED [http://en.wikipedia.org/wiki/Chin]
synonym: "mental part of face" EXACT [FMA:46495]
synonym: "mental region" EXACT [FMA:46495]
synonym: "mental region of face" EXACT [FMA:46495]
@@ -120074,7 +120070,7 @@
xref: http://www.snomedbrowser.com/Codes/Details/362666008
xref: MA:0000028
is_a: UBERON:0000475 ! organism subdivision
-relationship: part_of UBERON:0000915 {source="FMA"} ! thoracic segment of trunk
+relationship: part_of UBERON:0000915 {source="MA"} ! thoracic segment of trunk
relationship: part_of UBERON:0011270 {source="FMA"} ! dorsal trunk
[Term]
@@ -120417,11 +120413,12 @@
[Term]
id: UBERON:0008278
-name: nematocyst
+name: obsolete nematocyst
def: "A cnida that is harpoon-like in structure and is capable of penetrating prey." [http://en.wikipedia.org/wiki/Cnida#Types_of_cnidae, http://orcid.org/0000-0002-6601-2165]
+comment: This should be added to GO
synonym: "penetrant cnida" EXACT [http://orcid.org/0000-0002-6601-2165]
-xref: BTO:0000918
-is_a: UBERON:0008277 ! obsolete cnida
+is_obsolete: true
+consider: BTO:0000918
[Term]
id: UBERON:0008279
@@ -142667,7 +142664,7 @@
[Term]
id: UBERON:0011765
name: jugular lymph sac
-def: "Lymphatic vessels develop from lymph sacs that arise from developing veins, which are derived from mesoderm. The first lymph sacs to appear are the paired jugular lymph sacs at the junction of the internal jugular and subclavian veins." [VHOG:0001000]
+def: "An embryonic lymph sac that forms at the junction of the future internal jugular/anterior cardinals and subclavian veins." [https://discovery.lifemapsc.com/library/review-of-medical-embryology/chapter-128-development-of-the-lymphatic-system, https://github.com/obophenotype/uberon/issues/1383, VHOG:0001000]
xref: EMAPA:18249
xref: NCIT:C34196
xref: VHOG:0001000
@@ -156328,7 +156325,7 @@
id: UBERON:0014644
name: cerebrocerebellum
alt_id: UBERON:0004005
-def: "A phylogenetic subdivision of the cerenellum, the newest part, which is involved in planning movement and evaluating sensory information for action. It receives input exclusively from the cerebral cortex (especially the parietal lobe) via the pontine nuclei (forming cortico-ponto-cerebellar pathways), and sends fibres mainly to the ventrolateral thalamus (in turn connected to motor areas of the premotor cortex and primary motor area of the cerebral cortex) and to the red nucleus (in turn connected to the inferior olivary nucleus, which links back to the cerebellar hemispheres)." [http://en.wikipedia.org/wiki/Anatomy_of_the_cerebellum#Phylogenetic_and_functional_divisions]
+def: "The part of the cerebellar cortex that receives input from the cerebral cortex via axons from the pontine relay nuclei." [https://www.ncbi.nlm.nih.gov/books/NBK11100/]
subset: pheno_slim
synonym: "cerebellum lateral hemisphere" EXACT [MP:0009965]
synonym: "cerebellum lateral zone" EXACT [MP:0009965]
@@ -160585,6 +160582,7 @@
[Term]
id: UBERON:0015229
name: accessory circulatory organ
+def: "A circulatory organ that is not responsible for primary circulation." [UBERON:cjm]
is_a: UBERON:0015228 ! circulatory organ
[Term]
@@ -167497,6 +167495,7 @@
xref: FMA:84656
xref: http://en.wikipedia.org/wiki/Interoceptor
is_a: UBERON:0012451 {source="FMA"} ! sensory receptor
+relationship: part_of UBERON:0036255 ! interoceptive system
[Term]
id: UBERON:0018391
@@ -170915,7 +170914,7 @@
[Term]
id: UBERON:0022423
name: sagulum nucleus
-def: "A collection of principally small and medium-sized cells in the midbrain tegmentum lying at the margin of the midbrain adjacent to the nuclei of thenlateral lemniscus" [NIFSTD:nlx_64080]
+def: "A collection of principally small and medium-sized cells in the midbrain tegmentum lying at the margin of the midbrain adjacent to the nuclei of the lateral lemniscus" [NIFSTD:nlx_64080]
synonym: "nucleus saguli" EXACT LATIN [FMA:77492, FMA:TA]
synonym: "nucleus sagulum" RELATED LATIN [NeuroNames:1308]
synonym: "nucleus sagulum" RELATED [NIFSTD:nlx_64080]
@@ -177323,25 +177322,27 @@
[Term]
id: UBERON:0034950
-name: lymph sac
+name: lymph sac of lymph heart
+def: "An extensive dorsal subcutaneous sac that opens into a lymph heart." [https://github.com/obophenotype/uberon/issues/1383, https://www.merriam-webster.com/dictionary/lymph%20sac]
is_a: UBERON:0001473 ! lymphatic vessel
+relationship: part_of UBERON:0015202 ! lymph heart
[Term]
id: UBERON:0034951
name: subcutaneous lymph sac
xref: http://www.snomedbrowser.com/Codes/Details/330419002
-is_a: UBERON:0034950 ! lymph sac
+is_a: UBERON:0034950 ! lymph sac of lymph heart
relationship: present_in_taxon NCBITaxon:8342
[Term]
id: UBERON:0034952
name: intrapleuroperitoneal lymph sac
-is_a: UBERON:0034950 ! lymph sac
+is_a: UBERON:0034950 ! lymph sac of lymph heart
[Term]
id: UBERON:0034953
name: embryonic lymph sac
-def: "A population of lymphatic endothelial cell precursors that will form the lymph vessels." [http://dx.doi.org/10.1152/japplphysiol.00201.2013]
+def: "A population of lymphatic endothelial cell precursors that will form the lymph vessels." [http://dx.doi.org/10.1152/japplphysiol.00201.2013, https://github.com/obophenotype/uberon/issues/1383]
synonym: "primary lymph sac" RELATED []
xref: http://linkedlifedata.com/resource/umls/id/C1514424
xref: NCIT:C34262
@@ -177352,6 +177353,7 @@
[Term]
id: UBERON:0034958
name: retroperitoneal embryonic lymph sac
+def: "An embryonic lymph sac that forms in the root of the mesentery on the posterior abdominal wall" [https://discovery.lifemapsc.com/library/review-of-medical-embryology/chapter-128-development-of-the-lymphatic-system, https://github.com/obophenotype/uberon/issues/1383]
xref: http://linkedlifedata.com/resource/umls/id/C1514922
xref: NCIT:C34285
is_a: UBERON:0034953 ! embryonic lymph sac
@@ -179600,7 +179602,7 @@
xref: http://linkedlifedata.com/resource/umls/id/C0226661
xref: http://www.snomedbrowser.com/Codes/Details/277730007
xref: NCIT:C12881
-is_a: UBERON:0004148 {source="FMA"} ! cardiac vein
+is_a: UBERON:0004148 {source="ncithesaurus"} ! cardiac vein
[Term]
id: UBERON:0035377
@@ -183474,6 +183476,100 @@
relationship: part_of UBERON:0000033 ! head
[Term]
+id: UBERON:0036249
+name: zona pectinata of basilar membrane of cochlea
+def: "The acellular membrane that forms the outer two thirds of the basilar membrane of the conchlea." [http://medical-dictionary.thefreedictionary.com/zona+pectinata, https://github.com/obophenotype/uberon/issues/1357]
+synonym: "pectinate zone" BROAD []
+synonym: "pectinate zone of basilar membrane" EXACT []
+synonym: "pectinate zone of organ of corti" EXACT []
+synonym: "zona pectinata" BROAD []
+xref: birnlex:2529
+xref: FMA:75710
+xref: http://linkedlifedata.com/resource/umls/id/C1184863
+xref: http://www.snomedbrowser.com/Codes/Details/368962003
+is_a: UBERON:0036250 ! zone of basilar membrane of cochlea
+
+[Term]
+id: UBERON:0036250
+name: zone of basilar membrane of cochlea
+synonym: "zone of organ of corti" RELATED []
+xref: http://www.snomedbrowser.com/Codes/Details/361065006
+is_a: UBERON:0004121 ! ectoderm-derived structure
+is_a: UBERON:0005764 ! acellular membrane
+is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
+intersection_of: UBERON:0005764 ! acellular membrane
+intersection_of: part_of UBERON:0002226 ! basilar membrane of cochlea
+relationship: part_of UBERON:0002226 ! basilar membrane of cochlea
+
+[Term]
+id: UBERON:0036252
+name: interdigital space
+def: "The space between the digits of the hand or foot." [NCIT:C106201]
+xref: NCIT:C106201
+is_a: UBERON:0000464 ! anatomical space
+
+[Term]
+id: UBERON:0036253
+name: orifice of skull
+synonym: "cranial orifice" EXACT [FMA:53133]
+synonym: "skull orifice" EXACT [FMA:53133]
+xref: FMA:53133
+is_a: UBERON:0000161 ! orifice
+intersection_of: UBERON:0000161 ! orifice
+intersection_of: part_of UBERON:0003129 ! skull
+relationship: part_of UBERON:0003129 ! skull
+
+[Term]
+id: UBERON:0036254
+name: piriform aperture
+def: "A pear-shaped bony inlet comprising the most anterior and narrowest bony portion of the nasal airway." [http://en.wikipedia.org/wiki/Anterior_nasal_aperture, http://www.ncbi.nlm.nih.gov/pubmed/17082934, MGI:anna]
+synonym: "apertura piriformis" EXACT LATIN [FMA:TA]
+synonym: "apertura piriformis" RELATED [http://en.wikipedia.org/wiki/Anterior_nasal_aperture]
+synonym: "piriform aperture" RELATED [http://en.wikipedia.org/wiki/Anterior_nasal_aperture]
+synonym: "pyriform aperture" RELATED [http://en.wikipedia.org/wiki/Anterior_nasal_aperture]
+xref: FMA:53137
+xref: http://en.wikipedia.org/wiki/Anterior_nasal_aperture
+is_a: UBERON:0010313 ! neural crest-derived structure
+is_a: UBERON:0036253 ! orifice of skull
+relationship: part_of UBERON:0006813 ! nasal skeleton
+
+[Term]
+id: UBERON:0036255
+name: interoceptive system
+def: "The system that is responsible for sensing the internal state of the body." [http://en.wikipedia.org/wiki/Interoception, https://github.com/obophenotype/uberon/issues/1385]
+xref: http://en.wikipedia.org/wiki/Interoception
+is_a: UBERON:0001023 ! obsolete dendrite
+
+[Term]
+id: UBERON:0036256
+name: iliac lymph sac
+def: "An embryonic lymph sac that forms near the junction of the iliac veins with the posterior cardinal veins." [https://discovery.lifemapsc.com/library/review-of-medical-embryology/chapter-128-development-of-the-lymphatic-system, https://github.com/obophenotype/uberon/issues/1383]
+xref: NCIT:C34191
+is_a: UBERON:0034953 {source="NCIT"} ! embryonic lymph sac
+
+[Term]
+id: UBERON:0036259
+name: cardial lymph propulsor
+def: "A lymphatic propulsor that lies tightly against the truncus arteriosus, the major outflow tract of the amphibian heart." [http://jap.physiology.org/content/115/3/297, https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1233883/]
+is_a: UBERON:0015229 ! accessory circulatory organ
+
+[Term]
+id: UBERON:0036260
+name: embryonic cisterna chyli
+def: "An embryonic lymph sac that is dorsal to the retroperitoneal lymph sac, at the level of the adrenal glands." [https://discovery.lifemapsc.com/library/review-of-medical-embryology/chapter-128-development-of-the-lymphatic-system, https://github.com/obophenotype/uberon/issues/1383]
+synonym: "future upper portion of the cisterna chyli" RELATED []
+xref: EHDAA2:0000253
+is_a: UBERON:0034953 {source="cjm"} ! embryonic lymph sac
+
+[Term]
+id: UBERON:0036261
+name: accessory lymph sac
+def: "An extracoelomic lateral abdominal space that accumulates body fluid." [https://www.ncbi.nlm.nih.gov/pubmed/3958676]
+is_a: UBERON:0007499 ! epithelial sac
+relationship: part_of UBERON:0000916 ! abdomen
+relationship: present_in_taxon NCBITaxon:65997
+
+[Term]
id: UBERON:1000000
name: chin ventral margin
def: "Subdivision of the head consisting of the area along the lower edge of the chin." [https://github.com/obophenotype/uberon/issues/34, UBERON:EJS]
@@ -196934,10 +197030,11 @@
[Term]
id: UBERON:2002050
-name: Schreckstoff
+name: obsolete Schreckstoff
namespace: uberon/phenoscape-anatomy
def: "Chemical substance that functions as an alarm signal." []
-is_a: UBERON:0000470 ! obsolete cell part
+is_obsolete: true
+replaced_by: CHEBI:133299
created_by: teleost_anatomy_curators
[Term]
@@ -197451,7 +197548,9 @@
def: "Anatomical structure that is a subdivision of the cerebellum; it is the location of some lateral line nerve synapses." [TAO:wd]
comment: Definition based on Albert,2001 [Albert JS. 2001. Species Diversity and Phylogenetic systematics of American Knifefishes (Gymnotiformes, Teleostei). Miscellaneous Publications, Museum of Zoology, University of Michigan no. 190:140 pages.]
synonym: "EG" EXACT [TAO:0002106]
-is_a: UBERON:0002946 ! obsolete regional part of cerebellum
+is_a: UBERON:0002616 ! regional part of brain
+is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
+relationship: part_of UBERON:0002037 ! cerebellum
created_by: teleost_anatomy_curators
[Term]
@@ -207527,12 +207626,13 @@
[Term]
id: UBERON:3010306
-name: mitochondrial aggregate
+name: obsolete mitochondrial aggregate
namespace: uberon/phenoscape-anatomy
def: "A large distinctive organelle aggregate comprised of mitochondria found in developing oocytes of many species. From Pepling et al. 2007. " []
synonym: "Balbiani body" EXACT []
synonym: "mitochondrial cloud" EXACT []
-is_a: UBERON:0000470 ! obsolete cell part
+is_obsolete: true
+replaced_by: GO:0032019
created_by: amphibian_anatomy_curators
[Term]
@@ -210818,6 +210918,15 @@
created_by: NI
[Term]
+id: UBERON:4100121
+name: thagomizer
+def: "The distinctive arrangement of four to ten spikes on the tails of stegosaurid dinosaurs. These spikes are believed to have been a defensive measure against predators." [https://en.wikipedia.org/wiki/Thagomizer]
+comment: The arrangement of spikes originally had no distinct name; the term Thagomizer was coined in 1982 by cartoonist Gary Larson in his comic 'The Far Side', and thereafter became gradually adopted as an informal term within scientific circles, research, and education. {xref="https://en.wikipedia.org/wiki/Thagomizer"}
+synonym: "tail spikes" BROAD []
+is_a: UBERON:0034768 ! morphological feature
+relationship: part_of UBERON:0007812 ! post-anal tail
+
+[Term]
id: UBERON:4200000
name: medial blade of ilium
namespace: none
Modified: uberon/trunk/basic.owl
===================================================================
--- uberon/trunk/basic.owl 2017-09-10 17:36:10 UTC (rev 5397)
+++ uberon/trunk/basic.owl 2017-10-29 21:07:05 UTC (rev 5398)
@@ -17,7 +17,7 @@
xmlns:dc="http://purl.org/dc/elements/1.1/"
xmlns:insect-anatomy="http://purl.obolibrary.org/obo/uberon/insect-anatomy#">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/basic.owl">
- <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/releases/2017-09-09/basic.owl"/>
+ <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/releases/2017-10-29/basic.owl"/>
<dc:contributor rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Lydie Lane</dc:contributor>
<dc:contributor rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Paula Mabee</dc:contributor>
<doap:bug-database rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">https://github.com/obophenotype/uberon/issues/</doap:bug-database>
@@ -71,10 +71,10 @@
<dc:source rdf:resource="http://purl.obolibrary.org/obo/ma.owl"/>
<oboInOwl:treat-xrefs-as-reverse-genus-differentia rdf:datatype="http://www.w3.org/2001/XMLSchema#string">MA part_of NCBITaxon:10090</oboInOwl:treat-xrefs-as-reverse-genus-differentia>
<dc:contributor rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Cynthia Smith</dc:contributor>
- <rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/uberon/ext.owl>) VersionIRI(<null>))) [Axioms: 25806 Logical Axioms: 4720]</rdfs:comment>
<dc:contributor rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Carlo Torniai</dc:contributor>
<dc:source rdf:datatype="http://www.w3.org/2001/XMLSchema#string">ISBN:9780674021839 The Tree of Life - Guillaume Lecointre, Herve Le Guyader</dc:source>
<dc:creator rdf:datatype="http://www.w3.org/2001/XMLSchema#string">David Blackburn</dc:creator>
+ <rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/uberon/ext.owl>) VersionIRI(<null>))) [Axioms: 25811 Logical Axioms: 4719]</rdfs:comment>
<dc:contributor rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Phenoscape Project</dc:contributor>
<oboInOwl:treat-xrefs-as-equivalent rdf:datatype="http://www.w3.org/2001/XMLSchema#string">EFO</oboInOwl:treat-xrefs-as-equivalent>
<dc:creator rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Chris Mungall - http://orcid.org/0000-0002-6601-2165 </dc:creator>
@@ -4995,6 +4995,12 @@
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_0002465"/>
</owl:Restriction>
</rdfs:subClassOf>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0002202"/>
+ <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_0034953"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
<obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Any of the rounded masses of lymphoid tissue that are surrounded by a capsule of connective tissue, are distributed along the lymphatic vessels, and contain numerous lymphocytes which filter the flow of lymph.</obo:IAO_0000115>
<obo:UBPROP_0000003 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Lymph nodes that are associated with the lymphatic system have evolved in mammals.[well established][VHOG]</obo:UBPROP_0000003>
<oboInOwl:hasDbXref rdf:resource="http://en.wikipedia.org/wiki/Lymph_node"/>
@@ -13114,6 +13120,12 @@
</owl:Class>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000166"/>
+ <owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"/>
+ <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">oral orifice</owl:annotatedTarget>
+ <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">FMA:59806</oboInOwl:hasDbXref>
+ </owl:Axiom>
+ <owl:Axiom>
+ <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000166"/>
<owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym"/>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">mouth</owl:annotatedTarget>
<oboInOwl:hasSynonymType rdf:resource="http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT"/>
@@ -13146,12 +13158,6 @@
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">oral fissure</owl:annotatedTarget>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">FMA:59806</oboInOwl:hasDbXref>
</owl:Axiom>
- <owl:Axiom>
- <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000166"/>
- <owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"/>
- <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">oral orifice</owl:annotatedTarget>
- <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">FMA:59806</oboInOwl:hasDbXref>
- </owl:Axiom>
@@ -13555,12 +13561,12 @@
<owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0000175">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0001087"/>
<obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Pleural effusion is a bodily fluid that is produced in exess and accumulates in the pleural cavity, the fluid-filled space that surrounds the lungs. Excessive amounts of such fluid can impair breathing by limiting the expansion of the lungs during inhalation.</obo:IAO_0000115>
+ <obo:IAO_0000116 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">cede to MPATH? Note the ncit class is under finding.</obo:IAO_0000116>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">ENVO:02000033</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">OpenCyc:Mx4rLaTGCK2TEduAAAAOpmP6tw</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">ncithesaurus:Pleural_Effusion</oboInOwl:hasDbXref>
<oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">uberon</oboInOwl:hasOBONamespace>
<oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">UBERON:0000175</oboInOwl:id>
- <rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Editor noyes: cede to MPATH? Note the ncit class is under finding.</rdfs:comment>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">pleural effusion</rdfs:label>
</owl:Class>
<owl:Axiom>
@@ -13949,6 +13955,7 @@
</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A ridge on the cerebral cortex. It is generally surrounded by one or more sulci .</obo:IAO_0000115>
+ <obo:RO_0002174 rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_10088"/>
<obo:UBPROP_0000202 rdf:resource="http://purl.obolibrary.org/obo/FMA_72015"/>
<dc:contributor rdf:resource="https://github.com/RDruzinsky"/>
<dc:contributor rdf:resource="https://github.com/cmungall"/>
@@ -24298,6 +24305,7 @@
<obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Anatomical structure that is an individual member of a species and consists of more than one cell.</obo:IAO_0000115>
<obo:IAO_0000116 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">TODO - split body and mc organism? body continues after death stage</obo:IAO_0000116>
<obo:UBPROP_0000007 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">organismal</obo:UBPROP_0000007>
+ <oboInOwl:hasBroadSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">organism</oboInOwl:hasBroadSynonym>
<oboInOwl:hasDbXref rdf:resource="http://en.wikipedia.org/wiki/Multi-cellular_organism"/>
<oboInOwl:hasDbXref rdf:resource="http://uri.neuinfo.org/nif/nifstd/birnlex_18"/>
<oboInOwl:hasDbXref rdf:resource="http://www.snomedbrowser.com/Codes/Details/243928005"/>
@@ -24328,13 +24336,12 @@
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">galen:Organism</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">ncithesaurus:Whole_Organism</oboInOwl:hasDbXref>
<oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">multi-cellular organism</oboInOwl:hasExactSynonym>
- <oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">organism</oboInOwl:hasExactSynonym>
- <oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">whole organism</oboInOwl:hasExactSynonym>
<oboInOwl:hasNarrowSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">animal</oboInOwl:hasNarrowSynonym>
<oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">uberon</oboInOwl:hasOBONamespace>
<oboInOwl:hasRelatedSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Koerper</oboInOwl:hasRelatedSynonym>
<oboInOwl:hasRelatedSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">body</oboInOwl:hasRelatedSynonym>
<oboInOwl:hasRelatedSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">whole body</oboInOwl:hasRelatedSynonym>
+ <oboInOwl:hasRelatedSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">whole organism</oboInOwl:hasRelatedSynonym>
<oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">UBERON:0000468</oboInOwl:id>
<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/uberon/core#efo_slim"/>
<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/uberon/core#pheno_slim"/>
@@ -24352,6 +24359,14 @@
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000468"/>
+ <owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasBroadSynonym"/>
+ <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">organism</owl:annotatedTarget>
+ <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">FBbt:00000001</oboInOwl:hasDbXref>
+ <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">VHOG:0000671</oboInOwl:hasDbXref>
+ <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">WBbt:0007833</oboInOwl:hasDbXref>
+ </owl:Axiom>
+ <owl:Axiom>
+ <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000468"/>
<owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"/>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">multi-cellular organism</owl:annotatedTarget>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">CARO:0000012</oboInOwl:hasDbXref>
@@ -24371,9 +24386,24 @@
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000468"/>
<owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym"/>
+ <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">body</owl:annotatedTarget>
+ <oboInOwl:hasDbXref rdf:resource="http://uri.neuinfo.org/nif/nifstd/birnlex_18"/>
+ <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">AEO:0000103</oboInOwl:hasDbXref>
+ <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">FMA:256135</oboInOwl:hasDbXref>
+ <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">NCIT:C13041</oboInOwl:hasDbXref>
+ </owl:Axiom>
+ <owl:Axiom>
+ <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000468"/>
+ <owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym"/>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">whole body</owl:annotatedTarget>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">BTO:0001489</oboInOwl:hasDbXref>
</owl:Axiom>
+ <owl:Axiom>
+ <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000468"/>
+ <owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym"/>
+ <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">whole organism</owl:annotatedTarget>
+ <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">FBbt:00000001</oboInOwl:hasDbXref>
+ </owl:Axiom>
@@ -56234,12 +56264,6 @@
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0002202"/>
- <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_0005171"/>
- </owl:Restriction>
- </rdfs:subClassOf>
- <rdfs:subClassOf>
- <owl:Restriction>
- <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0002202"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_0008835"/>
</owl:Restriction>
</rdfs:subClassOf>
@@ -56272,17 +56296,6 @@
<owl:annotatedTarget>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0002202"/>
- <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_0005171"/>
- </owl:Restriction>
- </owl:annotatedTarget>
- <oboInOwl:source rdf:datatype="http://www.w3.org/2001/XMLSchema#string">EHDAA2</oboInOwl:source>
- </owl:Axiom>
- <owl:Axiom>
- <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/UBERON_0001280"/>
- <owl:annotatedProperty rdf:resource="http://www.w3.org/2000/01/rdf-schema#subClassOf"/>
- <owl:annotatedTarget>
- <owl:Restriction>
- <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0002202"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_0008835"/>
</owl:Restriction>
</owl:annotatedTarget>
@@ -61249,7 +61262,7 @@
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_0005297"/>
</owl:Restriction>
</rdfs:subClassOf>
- <obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">the tubules in the testes where spermatogenesis occurs</obo:IAO_0000115>
+ <obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">The tubules in the testes where spermatogenesis occurs.</obo:IAO_0000115>
<obo:UBPROP_0000001 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Any of the coiled tubules located in the testes in which spermatozoa are produced.[AAO]</obo:UBPROP_0000001>
<obo:UBPROP_0000001 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">One of two or three twisted curved tubules in each lobule of the testis in which spermatogenesis occurs. [TFD][VHOG]</obo:UBPROP_0000001>
<obo:UBPROP_0000003 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Frogs among amphibians and the amniotes have males with testes that are composed of seminiferous tubules, which differ from ampullae in being long, highly convoluted ductules.[well established][VHOG]</obo:UBPROP_0000003>
@@ -61303,7 +61316,8 @@
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/UBERON_0001343"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
- <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">the tubules in the testes where spermatogenesis occurs</owl:annotatedTarget>
+ <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">The tubules in the testes where spermatogenesis occurs.</owl:annotatedTarget>
+ <oboInOwl:hasDbXref rdf:resource="https://github.com/obophenotype/uberon/issues/1381"/>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">ISBN:0-683-40008-8</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">MGI:csmith</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">MP:0002216</oboInOwl:hasDbXref>
@@ -63337,6 +63351,7 @@
<owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0001373">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0001630"/>
<obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">The Sartorius muscle - the longest muscle in the human body - is a long thin muscle that runs down the length of the thigh. Its upper portion forms the lateral border of the femoral triangle.</obo:IAO_0000115>
+ <obo:IAO_0000116 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">We do NOT group this AAO class here at this stage until further evidence of shared attachments</obo:IAO_0000116>
<obo:UBPROP_0000003 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">The ambiens of reptiles and the iliotibialis of amphibians are likely homologues of the sartorius.[well established][VHOG]</obo:UBPROP_0000003>
<obo:UBPROP_0000008 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">No iliotibialis in AAO - M. sartorius has def: 'Originates on the ventral pelvic rim, the pubic region, and the ventral surface of the adductor longus. The insertion bifurcates distally; the ventral portion attaches to the aponeurosis of the cruralis and the dorsal part attaches to the distal attachment of the gracilis major, the semitendinosus, and to the aponeurosis of the cruralis.' [AAO:0010027]</obo:UBPROP_0000008>
<obo:UBPROP_0000008 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">The ambiens of reptiles and the iliotibialis of amphibians are likely homologues of the sartorius. Kardong KV, Vertebrates: Comparative Anatomy, Function, Evolution, Fourth Edition (2006) McGraw-Hill, p.391 [VHOG:0001192]</obo:UBPROP_0000008>
@@ -63359,7 +63374,6 @@
<oboInOwl:hasRelatedSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">musculus sartorius</oboInOwl:hasRelatedSynonym>
<oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">UBERON:0001373</oboInOwl:id>
<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/uberon/core#uberon_slim"/>
- <rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string">. We do NOT group this AAO class here at this stage until further evidence of shared attachments</rdfs:comment>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">sartorius muscle</rdfs:label>
<foaf:depicted_by rdf:resource="http://upload.wikimedia.org/wikipedia/commons/a/af/Sartorius.png"/>
</owl:Class>
@@ -90369,7 +90383,7 @@
</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">An anatomical cavity that is part of the olfactory apparatus. This includes the space bounded anteriorly by the nares and posteriorly by the choanae, when these structures are present.</obo:IAO_0000115>
- <obo:IAO_0000116 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">defne the boundaries of this cavity for a variety of species and check that parthood relations are not too strong.</obo:IAO_0000116>
+ <obo:IAO_0000116 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">define the boundaries of this cavity for a variety of species and check that parthood relations are not too strong.</obo:IAO_0000116>
<obo:UBPROP_0000001 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Saclike space internal to the nasal capsule lined by respiratory and sensory epithelium and glandular tissue.[AAO]</obo:UBPROP_0000001>
<obo:UBPROP_0000001 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">a large air filled space above and behind the nose in the middle of the face[WP][Wikipedia:Nasal_cavity].</obo:UBPROP_0000001>
<obo:UBPROP_0000003 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Despite significant modification to the nasal cavity within Archosauria and its extreme hypertrophy and supraorbital development in Lambeosaurinae, the neural olfactory system and the olfactory region of the nasal cavity proper retain their plesiomorphic positions and associations, suggesting that this system is highly conserved in vertebrate evolution.[well established][VHOG]</obo:UBPROP_0000003>
@@ -107546,6 +107560,18 @@
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/UBERON_0001888"/>
<owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym"/>
+ <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">lateral olfactory tract</owl:annotatedTarget>
+ <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">NeuroNames:284</oboInOwl:hasDbXref>
+ </owl:Axiom>
+ <owl:Axiom>
+ <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/UBERON_0001888"/>
+ <owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym"/>
+ <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">lateral olfactory tract, body</owl:annotatedTarget>
+ <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">NeuroNames:284</oboInOwl:hasDbXref>
+ </owl:Axiom>
+ <owl:Axiom>
+ <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/UBERON_0001888"/>
+ <owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym"/>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">lateral olfactory tract. body</owl:annotatedTarget>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">BAMS:lot</oboInOwl:hasDbXref>
</owl:Axiom>
@@ -107631,18 +107657,6 @@
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">lateral olfactory stria</owl:annotatedTarget>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">NeuroNames:284</oboInOwl:hasDbXref>
</owl:Axiom>
- <owl:Axiom>
- <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/UBERON_0001888"/>
- <owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym"/>
- <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">lateral olfactory tract</owl:annotatedTarget>
- <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">NeuroNames:284</oboInOwl:hasDbXref>
- </owl:Axiom>
- <owl:Axiom>
- <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/UBERON_0001888"/>
- <owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym"/>
- <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">lateral olfactory tract, body</owl:annotatedTarget>
- ...
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