obo-svn-commit — sends mail for all commits to svn repository

[Obo-svn-commit] SF.net SVN: obo:[5395] uberon/releases/2017-05-29/

[<cmu...@us...>]

Revision: 5395
          http://sourceforge.net/p/obo/svn/5395
Author:   cmungall
Date:     2017-05-30 02:31:50 +0000 (Tue, 30 May 2017)
Log Message:
-----------
new-release

Added Paths:
-----------
    uberon/releases/2017-05-29/

This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.

[Obo-svn-commit] SF.net SVN: obo:[5393] uberon/releases/2017-05-21/

[<cmu...@us...>]

Revision: 5393
          http://sourceforge.net/p/obo/svn/5393
Author:   cmungall
Date:     2017-05-26 14:13:49 +0000 (Fri, 26 May 2017)
Log Message:
-----------
new-release

Added Paths:
-----------
    uberon/releases/2017-05-21/

This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.

[Obo-svn-commit] SF.net SVN: obo:[5390] uberon/releases/2016-07-14/

[<cmu...@us...>]

Revision: 5390
          http://sourceforge.net/p/obo/svn/5390
Author:   cmungall
Date:     2017-03-07 19:15:19 +0000 (Tue, 07 Mar 2017)
Log Message:
-----------
retroactively making 2016-07-14 release

Added Paths:
-----------
    uberon/releases/2016-07-14/

This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.

[Obo-svn-commit] SF.net SVN: obo:[5385] uberon/releases/2016-11-23/

[<cmu...@us...>]

Revision: 5385
          http://sourceforge.net/p/obo/svn/5385
Author:   cmungall
Date:     2016-11-24 20:47:57 +0000 (Thu, 24 Nov 2016)
Log Message:
-----------
new-release

Added Paths:
-----------
    uberon/releases/2016-11-23/

This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.

[Obo-svn-commit] SF.net SVN: obo:[5384] uberon/trunk

[<cmu...@us...>]

Revision: 5384
          http://sourceforge.net/p/obo/svn/5384
Author:   cmungall
Date:     2016-11-24 20:29:51 +0000 (Thu, 24 Nov 2016)
Log Message:
-----------
new release

Modified Paths:
--------------
    uberon/trunk/basic.obo
    uberon/trunk/basic.owl
    uberon/trunk/bridge/uberon-bridge-to-aao.obo
    uberon/trunk/bridge/uberon-bridge-to-aao.owl
    uberon/trunk/bridge/uberon-bridge-to-aeo.obo
    uberon/trunk/bridge/uberon-bridge-to-aeo.owl
    uberon/trunk/bridge/uberon-bridge-to-bila.obo
    uberon/trunk/bridge/uberon-bridge-to-bila.owl
    uberon/trunk/bridge/uberon-bridge-to-caro.obo
    uberon/trunk/bridge/uberon-bridge-to-caro.owl
    uberon/trunk/bridge/uberon-bridge-to-dhba.obo
    uberon/trunk/bridge/uberon-bridge-to-dhba.owl
    uberon/trunk/bridge/uberon-bridge-to-dmba.obo
    uberon/trunk/bridge/uberon-bridge-to-dmba.owl
    uberon/trunk/bridge/uberon-bridge-to-efo.obo
    uberon/trunk/bridge/uberon-bridge-to-efo.owl
    uberon/trunk/bridge/uberon-bridge-to-ehdaa.obo
    uberon/trunk/bridge/uberon-bridge-to-ehdaa.owl
    uberon/trunk/bridge/uberon-bridge-to-ehdaa2.obo
    uberon/trunk/bridge/uberon-bridge-to-ehdaa2.owl
    uberon/trunk/bridge/uberon-bridge-to-emapa.obo
    uberon/trunk/bridge/uberon-bridge-to-emapa.owl
    uberon/trunk/bridge/uberon-bridge-to-fbbt.obo
    uberon/trunk/bridge/uberon-bridge-to-fbbt.owl
    uberon/trunk/bridge/uberon-bridge-to-fbdv.obo
    uberon/trunk/bridge/uberon-bridge-to-fbdv.owl
    uberon/trunk/bridge/uberon-bridge-to-fma.obo
    uberon/trunk/bridge/uberon-bridge-to-fma.owl
    uberon/trunk/bridge/uberon-bridge-to-go.obo
    uberon/trunk/bridge/uberon-bridge-to-go.owl
    uberon/trunk/bridge/uberon-bridge-to-hao.obo
    uberon/trunk/bridge/uberon-bridge-to-hao.owl
    uberon/trunk/bridge/uberon-bridge-to-hba.obo
    uberon/trunk/bridge/uberon-bridge-to-hba.owl
    uberon/trunk/bridge/uberon-bridge-to-ma.obo
    uberon/trunk/bridge/uberon-bridge-to-ma.owl
    uberon/trunk/bridge/uberon-bridge-to-mba.obo
    uberon/trunk/bridge/uberon-bridge-to-mba.owl
    uberon/trunk/bridge/uberon-bridge-to-mfo.obo
    uberon/trunk/bridge/uberon-bridge-to-mfo.owl
    uberon/trunk/bridge/uberon-bridge-to-nifstd.obo
    uberon/trunk/bridge/uberon-bridge-to-nifstd.owl
    uberon/trunk/bridge/uberon-bridge-to-og.obo
    uberon/trunk/bridge/uberon-bridge-to-og.owl
    uberon/trunk/bridge/uberon-bridge-to-pba.obo
    uberon/trunk/bridge/uberon-bridge-to-pba.owl
    uberon/trunk/bridge/uberon-bridge-to-sctid.obo
    uberon/trunk/bridge/uberon-bridge-to-sctid.owl
    uberon/trunk/bridge/uberon-bridge-to-spd.obo
    uberon/trunk/bridge/uberon-bridge-to-spd.owl
    uberon/trunk/bridge/uberon-bridge-to-tads.obo
    uberon/trunk/bridge/uberon-bridge-to-tads.owl
    uberon/trunk/bridge/uberon-bridge-to-tao.obo
    uberon/trunk/bridge/uberon-bridge-to-tao.owl
    uberon/trunk/bridge/uberon-bridge-to-tgma.obo
    uberon/trunk/bridge/uberon-bridge-to-tgma.owl
    uberon/trunk/bridge/uberon-bridge-to-vsao.obo
    uberon/trunk/bridge/uberon-bridge-to-vsao.owl
    uberon/trunk/bridge/uberon-bridge-to-wbbt.obo
    uberon/trunk/bridge/uberon-bridge-to-wbbt.owl
    uberon/trunk/bridge/uberon-bridge-to-wbls.obo
    uberon/trunk/bridge/uberon-bridge-to-wbls.owl
    uberon/trunk/bridge/uberon-bridge-to-xao.obo
    uberon/trunk/bridge/uberon-bridge-to-xao.owl
    uberon/trunk/bridge/uberon-bridge-to-zfa.obo
    uberon/trunk/bridge/uberon-bridge-to-zfa.owl
    uberon/trunk/bridge/uberon-bridge-to-zfs.obo
    uberon/trunk/bridge/uberon-bridge-to-zfs.owl
    uberon/trunk/chebi_import.owl
    uberon/trunk/cl_import.owl
    uberon/trunk/composite-metazoan-basic.obo
    uberon/trunk/composite-metazoan.obo
    uberon/trunk/composite-metazoan.owl
    uberon/trunk/composite-vertebrate.obo
    uberon/trunk/composite-vertebrate.owl
    uberon/trunk/core.obo
    uberon/trunk/core.owl
    uberon/trunk/diffs/uberon-diff.md
    uberon/trunk/ext.obo
    uberon/trunk/ext.owl
    uberon/trunk/go_import.owl
    uberon/trunk/merged.obo
    uberon/trunk/merged.owl
    uberon/trunk/ncbitaxon_import.owl
    uberon/trunk/pato_import.owl
    uberon/trunk/pr_import.owl
    uberon/trunk/reports/stages-human-report.tsv
    uberon/trunk/reports/stages-metazoan-report.tsv
    uberon/trunk/reports/stages-mouse-report.tsv
    uberon/trunk/reports/stages-xenopus-report.tsv
    uberon/trunk/ro_import.owl
    uberon/trunk/subsets/amniote-basic.obo
    uberon/trunk/subsets/amniote-basic.owl
    uberon/trunk/subsets/appendicular-minimal.obo
    uberon/trunk/subsets/circulatory-minimal.obo
    uberon/trunk/subsets/cranial-minimal.obo
    uberon/trunk/subsets/cumbo.obo
    uberon/trunk/subsets/cumbo.owl
    uberon/trunk/subsets/digestive-minimal.obo
    uberon/trunk/subsets/efo-slim.obo
    uberon/trunk/subsets/efo-slim.owl
    uberon/trunk/subsets/euarchontoglires-basic.obo
    uberon/trunk/subsets/euarchontoglires-basic.owl
    uberon/trunk/subsets/excretory-minimal.obo
    uberon/trunk/subsets/immune-minimal.obo
    uberon/trunk/subsets/life-stages-composite.obo
    uberon/trunk/subsets/life-stages-core.obo
    uberon/trunk/subsets/life-stages-core.owl
    uberon/trunk/subsets/mouse-view.owl
    uberon/trunk/subsets/musculoskeletal-minimal.obo
    uberon/trunk/subsets/nervous-minimal.obo
    uberon/trunk/subsets/pulmonary-minimal.obo
    uberon/trunk/subsets/reproductive-minimal.obo
    uberon/trunk/subsets/sensory-minimal.obo
    uberon/trunk/subsets/uberon-with-isa-for-FMA-MA-ZFA.obo
    uberon/trunk/uberon.obo
    uberon/trunk/uberon.owl

Modified: uberon/trunk/basic.obo
===================================================================
--- uberon/trunk/basic.obo	2016-10-24 19:26:53 UTC (rev 5383)
+++ uberon/trunk/basic.obo	2016-11-24 20:29:51 UTC (rev 5384)
@@ -1,6 +1,6 @@
 format-version: 1.2
-data-version: uberon/releases/2016-10-23/basic.owl
-date: 23:10:2016 18:16
+data-version: uberon/releases/2016-11-23/basic.owl
+date: 23:11:2016 21:33
 saved-by: cjm
 subsetdef: cumbo "CUMBO"
 subsetdef: cyclostome_subset "cyclostome structures"
@@ -23,6 +23,7 @@
 subsetdef: pheno_slim "Phenotype slim"
 subsetdef: phenotype_rcn "A subset specifically created for the 2012 Phenotype RCN meeting. Includes some human-specific terms that may eventually be removed when they are adequately represented with part of relationships in FMA"
 subsetdef: uberon_slim "Uberon slim - subset that excludes obscure terms and deep compositional terms"
+subsetdef: ubprop:upper_level "abstract upper-level terms not directly useful for analysis"
 subsetdef: unverified_taxonomic_grouping "Indicates that the class encompasses classes from other AOs that have not been verified"
 subsetdef: upper_level "abstract upper-level terms not directly useful for analysis"
 subsetdef: vertebrate_core "core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO"
@@ -91,6 +92,35504 @@
 treat-xrefs-as-reverse-genus-differentia: ZFS part_of NCBITaxon:7954
 
 [Term]
+id: BFO:0000030
+name: object
+is_a: BFO:0000040 ! material entity
+
+[Term]
+id: BFO:0000040
+name: material entity
+
+[Term]
+id: CHEBI:131927
+name: dicarboxylic acids and O-substituted derivatives
+is_a: CHEBI:36586 ! carbonyl compound
+
+[Term]
+id: CHEBI:15440
+name: squalene
+is_a: CHEBI:35191 ! triterpene
+
+[Term]
+id: CHEBI:16247
+name: phospholipid
+is_a: CHEBI:18059 ! lipid
+is_a: CHEBI:25703 ! organic phosphate
+is_a: CHEBI:37734 ! phosphoric ester
+
+[Term]
+id: CHEBI:16526
+name: carbon dioxide
+is_a: CHEBI:23014 ! carbon oxide
+is_a: CHEBI:64708 ! one-carbon compound
+
+[Term]
+id: CHEBI:16646
+name: carbohydrate
+is_a: CHEBI:78616 ! carbohydrates and carbohydrate derivatives
+
+[Term]
+id: CHEBI:16990
+name: bilirubin
+is_a: CHEBI:35692 ! dicarboxylic acid
+is_a: CHEBI:36735 ! biladienes
+
+[Term]
+id: CHEBI:17029
+name: chitin
+is_a: CHEBI:21638 ! N-acylglucosamine
+is_a: CHEBI:22506 ! aminoglycan
+
+[Term]
+id: CHEBI:17089
+name: glycoprotein
+is_a: CHEBI:33837 ! conjugated protein
+is_a: CHEBI:63299 ! carbohydrate derivative
+
+[Term]
+id: CHEBI:17761
+name: ceramide
+is_a: CHEBI:26739 ! sphingolipid
+is_a: CHEBI:37622 ! carboxamide
+
+[Term]
+id: CHEBI:18059
+name: lipid
+is_a: CHEBI:50860 ! organic molecular entity
+
+[Term]
+id: CHEBI:18085
+name: glycosaminoglycan
+is_a: CHEBI:22506 ! aminoglycan
+
+[Term]
+id: CHEBI:18154
+name: polysaccharide
+is_a: CHEBI:16646 ! carbohydrate
+is_a: CHEBI:33694 ! biomacromolecule
+
+[Term]
+id: CHEBI:18246
+name: (1->4)-beta-D-glucan
+is_a: CHEBI:28793 ! beta-D-glucan
+
+[Term]
+id: CHEBI:21638
+name: N-acylglucosamine
+is_a: CHEBI:21656 ! N-acyl-hexosamine
+is_a: CHEBI:24271 ! glucosamines
+
+[Term]
+id: CHEBI:21656
+name: N-acyl-hexosamine
+is_a: CHEBI:24586 ! hexosamine
+
+[Term]
+id: CHEBI:22506
+name: aminoglycan
+is_a: CHEBI:35352 ! organonitrogen compound
+is_a: CHEBI:65212 ! polysaccharide derivative
+
+[Term]
+id: CHEBI:22868
+name: bile salt
+is_a: CHEBI:36078 ! cholanoid
+is_a: CHEBI:38700 ! organic sodium salt
+
+[Term]
+id: CHEBI:22985
+name: calcium molecular entity
+is_a: CHEBI:33299 ! alkaline earth molecular entity
+
+[Term]
+id: CHEBI:23014
+name: carbon oxide
+is_a: CHEBI:25701 ! organic oxide
+is_a: CHEBI:36963 ! organooxygen compound
+
+[Term]
+id: CHEBI:23016
+name: carbonates
+is_a: CHEBI:36963 ! organooxygen compound
+
+[Term]
+id: CHEBI:23044
+name: carotenoid
+is_a: CHEBI:26935 ! tetraterpenoid
+
+[Term]
+id: CHEBI:23045
+name: carotenol
+is_a: CHEBI:27325 ! xanthophyll
+
+[Term]
+id: CHEBI:23079
+name: cerebroside
+is_a: CHEBI:17761 ! ceramide
+is_a: CHEBI:25513 ! neutral glycosphingolipid
+
+[Term]
+id: CHEBI:23213
+name: choline ester
+is_a: CHEBI:35701 ! ester
+
+[Term]
+id: CHEBI:23217
+name: cholines
+is_a: CHEBI:35267 ! quaternary ammonium ion
+
+[Term]
+id: CHEBI:23367
+name: molecular entity
+is_a: BFO:0000030 ! object
+is_a: CHEBI:24431 ! chemical entity
+
+[Term]
+id: CHEBI:24271
+name: glucosamines
+is_a: CHEBI:24586 ! hexosamine
+
+[Term]
+id: CHEBI:24402
+name: glycosphingolipid
+is_a: CHEBI:26739 ! sphingolipid
+is_a: CHEBI:33563 ! glycolipid
+
+[Term]
+id: CHEBI:24431
+name: chemical entity
+
+[Term]
+id: CHEBI:24532
+name: organic heterocyclic compound
+is_a: CHEBI:33285 ! heteroorganic entity
+is_a: CHEBI:33832 ! organic cyclic compound
+is_a: CHEBI:5686 ! heterocyclic compound
+
+[Term]
+id: CHEBI:24586
+name: hexosamine
+is_a: CHEBI:60926 ! amino monosaccharide
+
+[Term]
+id: CHEBI:24632
+name: hydrocarbon
+is_a: CHEBI:33245 ! organic fundamental parent
+
+[Term]
+id: CHEBI:24651
+name: hydroxides
+is_a: CHEBI:25806 ! oxygen molecular entity
+is_a: CHEBI:33608 ! hydrogen molecular entity
+is_a: CHEBI:37577 ! heteroatomic molecular entity
+
+[Term]
+id: CHEBI:24833
+name: oxoacid
+is_a: CHEBI:24651 ! hydroxides
+
+[Term]
+id: CHEBI:24866
+name: salt
+is_a: CHEBI:37577 ! heteroatomic molecular entity
+
+[Term]
+id: CHEBI:24868
+name: organic salt
+is_a: CHEBI:24866 ! salt
+
+[Term]
+id: CHEBI:24870
+name: ion
+is_a: CHEBI:23367 ! molecular entity
+
+[Term]
+id: CHEBI:24913
+name: isoprenoid
+is_a: CHEBI:18059 ! lipid
+
+[Term]
+id: CHEBI:25046
+name: linear tetrapyrrole
+is_a: CHEBI:26932 ! tetrapyrrole
+
+[Term]
+id: CHEBI:25367
+name: molecule
+is_a: CHEBI:36357 ! polyatomic entity
+
+[Term]
+id: CHEBI:25513
+name: neutral glycosphingolipid
+is_a: CHEBI:24402 ! glycosphingolipid
+
+[Term]
+id: CHEBI:25585
+name: nonmetal atom
+is_a: CHEBI:33250 ! atom
+
+[Term]
+id: CHEBI:25701
+name: organic oxide
+is_a: CHEBI:25741 ! oxide
+
+[Term]
+id: CHEBI:25703
+name: organic phosphate
+is_a: CHEBI:25710 ! organophosphorus compound
+is_a: CHEBI:26020 ! phosphate
+
+[Term]
+id: CHEBI:25704
+name: organic sulfate
+is_a: CHEBI:26820 ! sulfates
+is_a: CHEBI:33261 ! organosulfur compound
+
+[Term]
+id: CHEBI:25710
+name: organophosphorus compound
+is_a: CHEBI:26082 ! phosphorus molecular entity
+is_a: CHEBI:33285 ! heteroorganic entity
+
+[Term]
+id: CHEBI:25741
+name: oxide
+is_a: CHEBI:25806 ! oxygen molecular entity
+is_a: CHEBI:37577 ! heteroatomic molecular entity
+
+[Term]
+id: CHEBI:25805
+name: oxygen atom
+is_a: CHEBI:25585 ! nonmetal atom
+is_a: CHEBI:33303 ! chalcogen
+
+[Term]
+id: CHEBI:25806
+name: oxygen molecular entity
+is_a: CHEBI:33304 ! chalcogen molecular entity
+
+[Term]
+id: CHEBI:26020
+name: phosphate
+is_a: CHEBI:26079 ! phosphoric acid derivative
+
+[Term]
+id: CHEBI:26079
+name: phosphoric acid derivative
+is_a: CHEBI:36359 ! phosphorus oxoacid derivative
+
+[Term]
+id: CHEBI:26082
+name: phosphorus molecular entity
+is_a: CHEBI:33302 ! pnictogen molecular entity
+
+[Term]
+id: CHEBI:26214
+name: porphyrins
+is_a: CHEBI:36309 ! cyclic tetrapyrrole
+
+[Term]
+id: CHEBI:26469
+name: quaternary nitrogen compound
+is_a: CHEBI:35352 ! organonitrogen compound
+
+[Term]
+id: CHEBI:26712
+name: sodium molecular entity
+is_a: CHEBI:33296 ! alkali metal molecular entity
+
+[Term]
+id: CHEBI:26714
+name: sodium salt
+is_a: CHEBI:26712 ! sodium molecular entity
+is_a: CHEBI:35479 ! alkali metal salt
+
+[Term]
+id: CHEBI:26739
+name: sphingolipid
+is_a: CHEBI:18059 ! lipid
+is_a: CHEBI:35352 ! organonitrogen compound
+is_a: CHEBI:36963 ! organooxygen compound
+
+[Term]
+id: CHEBI:26819
+name: sulfuric ester
+is_a: CHEBI:35701 ! ester
+is_a: CHEBI:37826 ! sulfuric acid derivative
+
+[Term]
+id: CHEBI:26820
+name: sulfates
+is_a: CHEBI:37826 ! sulfuric acid derivative
+
+[Term]
+id: CHEBI:26835
+name: sulfur molecular entity
+is_a: CHEBI:33304 ! chalcogen molecular entity
+
+[Term]
+id: CHEBI:26873
+name: terpenoid
+is_a: CHEBI:24913 ! isoprenoid
+
+[Term]
+id: CHEBI:26932
+name: tetrapyrrole
+is_a: CHEBI:33833 ! heteroarene
+is_a: CHEBI:38077 ! polypyrrole
+
+[Term]
+id: CHEBI:26935
+name: tetraterpenoid
+is_a: CHEBI:26873 ! terpenoid
+
+[Term]
+id: CHEBI:27325
+name: xanthophyll
+is_a: CHEBI:23044 ! carotenoid
+
+[Term]
+id: CHEBI:27369
+name: zwitterion
+is_a: CHEBI:51151 ! dipolar compound
+
+[Term]
+id: CHEBI:27547
+name: zeaxanthin
+is_a: CHEBI:23045 ! carotenol
+
+[Term]
+id: CHEBI:28793
+name: beta-D-glucan
+is_a: CHEBI:37163 ! glucan
+
+[Term]
+id: CHEBI:28838
+name: lutein
+is_a: CHEBI:23045 ! carotenol
+
+[Term]
+id: CHEBI:28963
+name: amino sugar
+is_a: CHEBI:63299 ! carbohydrate derivative
+
+[Term]
+id: CHEBI:32988
+name: amide
+is_a: CHEBI:51143 ! nitrogen molecular entity
+
+[Term]
+id: CHEBI:3311
+name: calcium carbonate
+is_a: CHEBI:35156 ! calcium salt
+is_a: CHEBI:46721 ! carbonate salt
+is_a: CHEBI:64708 ! one-carbon compound
+
+[Term]
+id: CHEBI:33241
+name: oxoacid derivative
+is_a: CHEBI:37577 ! heteroatomic molecular entity
+
+[Term]
+id: CHEBI:33245
+name: organic fundamental parent
+is_a: CHEBI:37175 ! organic hydride
+is_a: CHEBI:50860 ! organic molecular entity
+
+[Term]
+id: CHEBI:33250
+name: atom
+is_a: CHEBI:24431 ! chemical entity
+
+[Term]
+id: CHEBI:33256
+name: primary amide
+is_a: CHEBI:32988 ! amide
+
+[Term]
+id: CHEBI:33261
+name: organosulfur compound
+is_a: CHEBI:26835 ! sulfur molecular entity
+is_a: CHEBI:36962 ! organochalcogen compound
+
+[Term]
+id: CHEBI:33285
+name: heteroorganic entity
+is_a: CHEBI:50860 ! organic molecular entity
+
+[Term]
+id: CHEBI:33296
+name: alkali metal molecular entity
+is_a: CHEBI:33674 ! s-block molecular entity
+
+[Term]
+id: CHEBI:33299
+name: alkaline earth molecular entity
+is_a: CHEBI:33674 ! s-block molecular entity
+
+[Term]
+id: CHEBI:33302
+name: pnictogen molecular entity
+is_a: CHEBI:33675 ! p-block molecular entity
+
+[Term]
+id: CHEBI:33303
+name: chalcogen
+is_a: CHEBI:33560 ! p-block element atom
+
+[Term]
+id: CHEBI:33304
+name: chalcogen molecular entity
+is_a: CHEBI:33675 ! p-block molecular entity
+
+[Term]
+id: CHEBI:33318
+name: main group element atom
+is_a: CHEBI:33250 ! atom
+
+[Term]
+id: CHEBI:33424
+name: sulfur oxoacid derivative
+is_a: CHEBI:26835 ! sulfur molecular entity
+is_a: CHEBI:33241 ! oxoacid derivative
+
+[Term]
+id: CHEBI:33560
+name: p-block element atom
+is_a: CHEBI:33318 ! main group element atom
+
+[Term]
+id: CHEBI:33563
+name: glycolipid
+is_a: CHEBI:35740 ! liposaccharide
+
+[Term]
+id: CHEBI:33575
+name: carboxylic acid
+is_a: CHEBI:35605 ! carbon oxoacid
+is_a: CHEBI:36586 ! carbonyl compound
+is_a: CHEBI:64709 ! organic acid
+
+[Term]
+id: CHEBI:33579
+name: main group molecular entity
+is_a: CHEBI:23367 ! molecular entity
+
+[Term]
+id: CHEBI:33582
+name: carbon group molecular entity
+is_a: CHEBI:33675 ! p-block molecular entity
+
+[Term]
+id: CHEBI:33595
+name: cyclic compound
+is_a: CHEBI:25367 ! molecule
+
+[Term]
+id: CHEBI:33608
+name: hydrogen molecular entity
+is_a: CHEBI:33674 ! s-block molecular entity
+
+[Term]
+id: CHEBI:33635
+name: polycyclic compound
+is_a: CHEBI:33595 ! cyclic compound
+
+[Term]
+id: CHEBI:33655
+name: aromatic compound
+is_a: CHEBI:33595 ! cyclic compound
+
+[Term]
+id: CHEBI:33659
+name: organic aromatic compound
+is_a: CHEBI:33655 ! aromatic compound
+is_a: CHEBI:33832 ! organic cyclic compound
+
+[Term]
+id: CHEBI:33674
+name: s-block molecular entity
+is_a: CHEBI:33579 ! main group molecular entity
+
+[Term]
+id: CHEBI:33675
+name: p-block molecular entity
+is_a: CHEBI:33579 ! main group molecular entity
+
+[Term]
+id: CHEBI:33692
+name: hydrides
+is_a: CHEBI:33608 ! hydrogen molecular entity
+is_a: CHEBI:37577 ! heteroatomic molecular entity
+
+[Term]
+id: CHEBI:33694
+name: biomacromolecule
+is_a: CHEBI:33839 ! macromolecule
+is_a: CHEBI:50860 ! organic molecular entity
+
+[Term]
+id: CHEBI:33695
+name: information biomacromolecule
+is_a: CHEBI:33694 ! biomacromolecule
+
+[Term]
+id: CHEBI:33702
+name: polyatomic cation
+is_a: CHEBI:36358 ! polyatomic ion
+is_a: CHEBI:36916 ! cation
+
+[Term]
+id: CHEBI:33832
+name: organic cyclic compound
+is_a: CHEBI:33595 ! cyclic compound
+is_a: CHEBI:72695 ! organic molecule
+
+[Term]
+id: CHEBI:33833
+name: heteroarene
+is_a: CHEBI:24532 ! organic heterocyclic compound
+is_a: CHEBI:33659 ! organic aromatic compound
+
+[Term]
+id: CHEBI:33837
+name: conjugated protein
+is_a: CHEBI:36080 ! protein
+
+[Term]
+id: CHEBI:33839
+name: macromolecule
+is_a: CHEBI:36357 ! polyatomic entity
+
+[Term]
+id: CHEBI:35156
+name: calcium salt
+is_a: CHEBI:22985 ! calcium molecular entity
+is_a: CHEBI:36364 ! alkaline earth salt
+
+[Term]
+id: CHEBI:35186
+name: terpene
+is_a: CHEBI:24632 ! hydrocarbon
+is_a: CHEBI:24913 ! isoprenoid
+
+[Term]
+id: CHEBI:35191
+name: triterpene
+is_a: CHEBI:35186 ! terpene
+
+[Term]
+id: CHEBI:35267
+name: quaternary ammonium ion
+is_a: CHEBI:35274 ! ammonium ion
+
+[Term]
+id: CHEBI:35274
+name: ammonium ion
+is_a: CHEBI:33702 ! polyatomic cation
+is_a: CHEBI:51143 ! nitrogen molecular entity
+
+[Term]
+id: CHEBI:35281
+name: onium betaine
+is_a: CHEBI:27369 ! zwitterion
+
+[Term]
+id: CHEBI:35284
+name: ammonium betaine
+is_a: CHEBI:26469 ! quaternary nitrogen compound
+is_a: CHEBI:35281 ! onium betaine
+
+[Term]
+id: CHEBI:35341
+name: steroid
+is_a: CHEBI:18059 ! lipid
+is_a: CHEBI:51958 ! organic polycyclic compound
+
+[Term]
+id: CHEBI:35352
+name: organonitrogen compound
+is_a: CHEBI:33285 ! heteroorganic entity
+is_a: CHEBI:51143 ! nitrogen molecular entity
+
+[Term]
+id: CHEBI:35479
+name: alkali metal salt
+is_a: CHEBI:24866 ! salt
+is_a: CHEBI:33296 ! alkali metal molecular entity
+
+[Term]
+id: CHEBI:35507
+name: natural product fundamental parent
+is_a: CHEBI:33245 ! organic fundamental parent
+
+[Term]
+id: CHEBI:35605
+name: carbon oxoacid
+is_a: CHEBI:24833 ! oxoacid
+is_a: CHEBI:36963 ! organooxygen compound
+
+[Term]
+id: CHEBI:35692
+name: dicarboxylic acid
+is_a: CHEBI:131927 ! dicarboxylic acids and O-substituted derivatives
+is_a: CHEBI:33575 ! carboxylic acid
+
+[Term]
+id: CHEBI:35701
+name: ester
+is_a: CHEBI:36963 ! organooxygen compound
+
+[Term]
+id: CHEBI:35722
+name: sulfated glycosaminoglycan
+is_a: CHEBI:18085 ! glycosaminoglycan
+is_a: CHEBI:35724 ! carbohydrate sulfate
+
+[Term]
+id: CHEBI:35724
+name: carbohydrate sulfate
+is_a: CHEBI:25704 ! organic sulfate
+is_a: CHEBI:26819 ! sulfuric ester
+is_a: CHEBI:63299 ! carbohydrate derivative
+
+[Term]
+id: CHEBI:35740
+name: liposaccharide
+is_a: CHEBI:18059 ! lipid
+is_a: CHEBI:63299 ! carbohydrate derivative
+
+[Term]
+id: CHEBI:35786
+name: phosphosphingolipid
+is_a: CHEBI:16247 ! phospholipid
+is_a: CHEBI:26739 ! sphingolipid
+
+[Term]
+id: CHEBI:35794
+name: tetrapyrrole fundamental parent
+is_a: CHEBI:26932 ! tetrapyrrole
+is_a: CHEBI:35507 ! natural product fundamental parent
+
+[Term]
+id: CHEBI:36078
+name: cholanoid
+is_a: CHEBI:35341 ! steroid
+
+[Term]
+id: CHEBI:36080
+name: protein
+is_a: CHEBI:33695 ! information biomacromolecule
+
+[Term]
+id: CHEBI:36277
+name: bile acid salt
+is_a: CHEBI:24868 ! organic salt
+is_a: CHEBI:36078 ! cholanoid
+
+[Term]
+id: CHEBI:36309
+name: cyclic tetrapyrrole
+is_a: CHEBI:26932 ! tetrapyrrole
+is_a: CHEBI:47882 ! cyclic polypyrrole
+
+[Term]
+id: CHEBI:36357
+name: polyatomic entity
+is_a: CHEBI:23367 ! molecular entity
+
+[Term]
+id: CHEBI:36358
+name: polyatomic ion
+is_a: CHEBI:24870 ! ion
+is_a: CHEBI:36357 ! polyatomic entity
+
+[Term]
+id: CHEBI:36359
+name: phosphorus oxoacid derivative
+is_a: CHEBI:33241 ! oxoacid derivative
+is_a: CHEBI:36360 ! phosphorus oxoacids and derivatives
+
+[Term]
+id: CHEBI:36360
+name: phosphorus oxoacids and derivatives
+is_a: CHEBI:26082 ! phosphorus molecular entity
+
+[Term]
+id: CHEBI:36364
+name: alkaline earth salt
+is_a: CHEBI:24866 ! salt
+is_a: CHEBI:33299 ! alkaline earth molecular entity
+
+[Term]
+id: CHEBI:36498
+name: galactosylceramide
+is_a: CHEBI:23079 ! cerebroside
+is_a: CHEBI:5254 ! galactolipid
+is_a: CHEBI:62941 ! glycosylceramide
+
+[Term]
+id: CHEBI:36586
+name: carbonyl compound
+is_a: CHEBI:36587 ! organic oxo compound
+is_a: CHEBI:36963 ! organooxygen compound
+
+[Term]
+id: CHEBI:36587
+name: organic oxo compound
+is_a: CHEBI:72695 ! organic molecule
+
+[Term]
+id: CHEBI:36700
+name: phosphocholines
+is_a: CHEBI:23213 ! choline ester
+is_a: CHEBI:23217 ! cholines
+is_a: CHEBI:25703 ! organic phosphate
+is_a: CHEBI:37734 ! phosphoric ester
+
+[Term]
+id: CHEBI:36735
+name: biladienes
+is_a: CHEBI:25046 ! linear tetrapyrrole
+
+[Term]
+id: CHEBI:36916
+name: cation
+is_a: CHEBI:24870 ! ion
+
+[Term]
+id: CHEBI:36962
+name: organochalcogen compound
+is_a: CHEBI:33285 ! heteroorganic entity
+is_a: CHEBI:33304 ! chalcogen molecular entity
+
+[Term]
+id: CHEBI:36963
+name: organooxygen compound
+is_a: CHEBI:25806 ! oxygen molecular entity
+is_a: CHEBI:36962 ! organochalcogen compound
+
+[Term]
+id: CHEBI:37163
+name: glucan
+is_a: CHEBI:37164 ! homopolysaccharide
+
+[Term]
+id: CHEBI:37164
+name: homopolysaccharide
+is_a: CHEBI:18154 ! polysaccharide
+
+[Term]
+id: CHEBI:37175
+name: organic hydride
+is_a: CHEBI:33692 ! hydrides
+
+[Term]
+id: CHEBI:37395
+name: mucopolysaccharide
+is_a: CHEBI:18085 ! glycosaminoglycan
+
+[Term]
+id: CHEBI:37397
+name: chondroitin sulfate
+is_a: CHEBI:35722 ! sulfated glycosaminoglycan
+is_a: CHEBI:37395 ! mucopolysaccharide
+
+[Term]
+id: CHEBI:37577
+name: heteroatomic molecular entity
+is_a: CHEBI:36357 ! polyatomic entity
+
+[Term]
+id: CHEBI:37622
+name: carboxamide
+is_a: CHEBI:33256 ! primary amide
+is_a: CHEBI:35352 ! organonitrogen compound
+is_a: CHEBI:36963 ! organooxygen compound
+
+[Term]
+id: CHEBI:37734
+name: phosphoric ester
+is_a: CHEBI:26079 ! phosphoric acid derivative
+is_a: CHEBI:35701 ! ester
+
+[Term]
+id: CHEBI:37826
+name: sulfuric acid derivative
+is_a: CHEBI:33424 ! sulfur oxoacid derivative
+
+[Term]
+id: CHEBI:38077
+name: polypyrrole
+is_a: CHEBI:38101 ! organonitrogen heterocyclic compound
+
+[Term]
+id: CHEBI:38101
+name: organonitrogen heterocyclic compound
+is_a: CHEBI:24532 ! organic heterocyclic compound
+is_a: CHEBI:35352 ! organonitrogen compound
+
+[Term]
+id: CHEBI:38700
+name: organic sodium salt
+is_a: CHEBI:24868 ! organic salt
+is_a: CHEBI:26714 ! sodium salt
+
+[Term]
+id: CHEBI:39022
+name: inclusion compound
+is_a: CHEBI:50967 ! non-covalently-bound molecular entity
+
+[Term]
+id: CHEBI:39024
+name: clathrate compound
+is_a: CHEBI:39022 ! inclusion compound
+
+[Term]
+id: CHEBI:46662
+name: mineral
+is_a: CHEBI:59999 ! chemical substance
+
+[Term]
+id: CHEBI:46721
+name: carbonate salt
+is_a: CHEBI:23016 ! carbonates
+
+[Term]
+id: CHEBI:46723
+name: phosphate mineral
+is_a: CHEBI:46662 ! mineral
+
+[Term]
+id: CHEBI:47882
+name: cyclic polypyrrole
+is_a: CHEBI:38077 ! polypyrrole
+
+[Term]
+id: CHEBI:50860
+name: organic molecular entity
+is_a: CHEBI:33582 ! carbon group molecular entity
+
+[Term]
+id: CHEBI:50967
+name: non-covalently-bound molecular entity
+is_a: CHEBI:36357 ! polyatomic entity
+
+[Term]
+id: CHEBI:51143
+name: nitrogen molecular entity
+is_a: CHEBI:33302 ! pnictogen molecular entity
+
+[Term]
+id: CHEBI:51151
+name: dipolar compound
+is_a: CHEBI:72695 ! organic molecule
+
+[Term]
+id: CHEBI:51958
+name: organic polycyclic compound
+is_a: CHEBI:33635 ! polycyclic compound
+is_a: CHEBI:33832 ! organic cyclic compound
+
+[Term]
+id: CHEBI:52254
+name: apatite
+is_a: CHEBI:46723 ! phosphate mineral
+
+[Term]
+id: CHEBI:52255
+name: hydroxylapatite
+is_a: CHEBI:52254 ! apatite
+
+[Term]
+id: CHEBI:5254
+name: galactolipid
+is_a: CHEBI:33563 ! glycolipid
+
+[Term]
+id: CHEBI:5686
+name: heterocyclic compound
+is_a: CHEBI:33595 ! cyclic compound
+
+[Term]
+id: CHEBI:59999
+name: chemical substance
+is_a: CHEBI:24431 ! chemical entity
+
+[Term]
+id: CHEBI:60924
+name: keratan sulfate
+is_a: CHEBI:35722 ! sulfated glycosaminoglycan
+is_a: CHEBI:37395 ! mucopolysaccharide
+
+[Term]
+id: CHEBI:60926
+name: amino monosaccharide
+is_a: CHEBI:28963 ! amino sugar
+
+[Term]
+id: CHEBI:62941
+name: glycosylceramide
+is_a: CHEBI:17761 ! ceramide
+is_a: CHEBI:24402 ! glycosphingolipid
+
+[Term]
+id: CHEBI:63299
+name: carbohydrate derivative
+is_a: CHEBI:78616 ! carbohydrates and carbohydrate derivatives
+
+[Term]
+id: CHEBI:64583
+name: sphingomyelin
+is_a: CHEBI:35284 ! ammonium betaine
+is_a: CHEBI:35786 ! phosphosphingolipid
+is_a: CHEBI:36700 ! phosphocholines
+is_a: CHEBI:37622 ! carboxamide
+
+[Term]
+id: CHEBI:64708
+name: one-carbon compound
+is_a: CHEBI:50860 ! organic molecular entity
+
+[Term]
+id: CHEBI:64709
+name: organic acid
+is_a: CHEBI:50860 ! organic molecular entity
+
+[Term]
+id: CHEBI:6495
+name: lipoprotein
+is_a: CHEBI:33837 ! conjugated protein
+is_a: CHEBI:39024 ! clathrate compound
+
+[Term]
+id: CHEBI:65212
+name: polysaccharide derivative
+is_a: CHEBI:33694 ! biomacromolecule
+is_a: CHEBI:63299 ! carbohydrate derivative
+
+[Term]
+id: CHEBI:72695
+name: organic molecule
+is_a: CHEBI:25367 ! molecule
+is_a: CHEBI:50860 ! organic molecular entity
+
+[Term]
+id: CHEBI:78616
+name: carbohydrates and carbohydrate derivatives
+is_a: CHEBI:36963 ! organooxygen compound
+
+[Term]
+id: CHEBI:8337
+name: porphyrin
+is_a: CHEBI:26214 ! porphyrins
+is_a: CHEBI:35794 ! tetrapyrrole fundamental parent
+
+[Term]
+id: CL:0000000
+name: cell
+namespace: cell
+def: "A material entity of anatomical origin (part of or deriving from an organism) that has as its parts a maximally connected cell compartment surrounded by a plasma membrane." [CARO:mah]
+comment: The definition of cell is intended to represent all cells, and thus a cell is defined as a material entity and not an anatomical structure, which implies that it is part of an organism (or the entirety of one).
+subset: ubprop:upper_level
+xref: CALOHA:TS-2035
+xref: FMA:68646
+xref: GO:0005623
+xref: KUPO:0000002
+xref: VHOG:0001533
+xref: WBbt:0004017
+xref: XAO:0003012
+is_a: GO:0005575 ! cellular_component
+
+[Term]
+id: CL:0000001
+name: primary cultured cell
+namespace: cell
+def: "A cultured cell that is freshly isolated from a organismal source, or derives in culture from such a cell prior to the culture being passaged." [ReO:mhb]
+comment: Covers cells actively being cultured or stored in a quiescent state for future use.
+synonym: "primary cell culture cell" EXACT []
+synonym: "primary cell line cell" RELATED []
+synonym: "unpassaged cultured cell" EXACT []
+xref: BTO:0002290
+is_a: CL:0000010 ! cultured cell
+
+[Term]
+id: CL:0000002
+name: obsolete immortal cell line cell
+namespace: cell
+def: "OBSOLETE: A cell line cell that is expected to be capable of an unlimited number of divisions, and is thus able to support indefinite growth/propagation in vitro as part of a immortal cell line." [ReO:mhb]
+comment: Obsoleted in July 2013 and replaced by the CLO 'immortal cell line cell' class, as a result of CLO-OBI-CL alignment efforts.\n\nCovers cells actively being cultured or stored in a quiescent state for future use.
+synonym: "continuous cell line cell" EXACT []
+synonym: "permanent cell line cell" EXACT []
+is_obsolete: true
+replaced_by: CLO:0000019
+
+[Term]
+id: CL:0000003
+name: native cell
+namespace: cell
+def: "A cell that is found in a natural setting, which includes multicellular organism cells 'in vivo' (i.e. part of an organism), and unicellular organisms 'in environment' (i.e. part of a natural environment)." [CARO:mah]
+comment: To accommodate unicellular organisms better, 'cell in vivo' has been re-labeled 'native cell' to better represent its intended meaning - that is, that it is a cell in the context of a multicellular organism or in a natural environment. 'Native' is intended to contrast with 'in vitro', which refers to cells or other biological entities that have been intentionally placed in a controlled, non-natural setting for the purpose of study or manipulation. (MAH 1.12.12).
+subset: ubprop:upper_level
+synonym: "cell in vivo" NARROW []
+xref: CARO:0000013
+is_a: CL:0000000 ! cell
+is_a: GO:0005623 ! cell
+
+[Term]
+id: CL:0000004
+name: obsolete cell by organism
+namespace: cell
+def: "OBSOLETE: A classification of cells by the organisms within which they are contained." [FB:ma]
+comment: This term was made obsolete because there is no difference in meaning between it and 'cell', as any cell can be classified by its species. If you have used this term in annotation, please replace it with cell (CL:0000000), native cell (CL:0000003), or cell in vitro (CL:0001034) as appropriate.
+is_obsolete: true
+consider: CL:0000000
+consider: CL:0000003
+consider: CL:0001034
+
+[Term]
+id: CL:0000005
+name: fibroblast neural crest derived
+namespace: cell
+is_a: CL:0000057 ! fibroblast
+relationship: develops_from CL:0000008 ! migratory cranial neural crest cell
+
+[Term]
+id: CL:0000006
+name: neuronal receptor cell
+namespace: cell
+synonym: "neuronal receptor cell (sensu Animalia)" EXACT []
+is_a: CL:0000101 ! sensory neuron
+is_a: CL:0000197 ! receptor cell
+
+[Term]
+id: CL:0000007
+name: early embryonic cell
+namespace: cell
+def: "A cell found in the embryo before the formation of all the gem layers is complete." [GOC:tfm]
+is_a: CL:0002321 ! embryonic cell
+
+[Term]
+id: CL:0000008
+name: migratory cranial neural crest cell
+namespace: cell
+is_a: CL:0000333 ! migratory neural crest cell
+
+[Term]
+id: CL:0000009
+name: obsolete fusiform initial
+namespace: cell
+alt_id: CL:0000274
+def: "Obsolete. Use PO:0000079 from Plant Ontology instead. An elongated cell with approximately wedge-shaped ends, found in the vascular cambium, which gives rise to the elements of the axial system in the secondary vascular tissues." [ISBN:0471245208]
+comment: replaced_by: PO:0000079
+synonym: "xylem initial" RELATED []
+synonym: "xylem mother cell" RELATED []
+is_obsolete: true
+
+[Term]
+id: CL:0000010
+name: cultured cell
+namespace: cell
+def: "A cell in vitro that is or has been maintained or propagated as part of a cell culture." [ReO:mhb]
+comment: Note that this class was re-labeled to 'cultured cell' instead of 'cell line cell', as it intent was clarified to cover any cultured cells of multicellular and unicellular organisms. This includes cells actively being cultured, or cells that have been cultured but are stored in a quiescent state for future use. In having been cultured, cells must establish homeostasis and often replicate in a foreign environment. Accomodation of this stress initiates a selection of cells fit for such challenges, wherein necessary adaptive biochemical and.or genetic changes can occur. These changes can set them apart from the in vivo cells from which they derive, and such changes will typically accumulate and change over increasing time in culture.
+is_a: CL:0000578 ! experimentally modified cell in vitro
+
+[Term]
+id: CL:0000011
+name: migratory trunk neural crest cell
+namespace: cell
+is_a: CL:0000333 ! migratory neural crest cell
+
+[Term]
+id: CL:0000012
+name: obsolete cell by class
+namespace: cell
+comment: This term was made obsolete because there is no difference in meaning between it and 'cell', as any cell can be classified. If you have used this term in annotation, please replace it with cell (CL:0000000), native cell (CL:0000003), or cell in vitro (CL:0001034) as appropriate.
+is_obsolete: true
+consider: CL:0000000
+consider: CL:0000003
+consider: CL:0001034
+
+[Term]
+id: CL:0000013
+name: obsolete dentine secreting cell
+namespace: cell
+is_obsolete: true
+consider: CL:0000140
+
+[Term]
+id: CL:0000014
+name: germ line stem cell
+namespace: cell
+synonym: "germline stem cell" EXACT []
+is_a: CL:0000034 {is_inferred="true"} ! stem cell
+is_a: CL:0000039 {is_inferred="true"} ! germ line cell
+
+[Term]
+id: CL:0000015
+name: male germ cell
+namespace: cell
+xref: FMA:72290
+xref: MA:0002765
+xref: ncithesaurus:Spermatogenic_Cell
+xref: VHOG:0001531
+is_a: CL:0000586 {is_inferred="true"} ! germ cell
+
+[Term]
+id: CL:0000016
+name: male germ line stem cell
+namespace: cell
+is_a: CL:0000014 ! germ line stem cell
+is_a: CL:0000015 ! male germ cell
+
+[Term]
+id: CL:0000017
+name: spermatocyte
+namespace: cell
+def: "A male germ cell that develops from spermatogonia. The euploid primary spermatocytes undergo meiosis and give rise to the haploid secondary spermatocytes which in turn give rise to spermatids." [GOC:tfm, MESH:A05.360.490.890.880]
+xref: BTO:0001275
+xref: CALOHA:TS-0951
+xref: EMAPA:31484
+xref: FBbt:00004936
+xref: FMA:84049
+xref: WBbt:0006799
+is_a: CL:0000015 {is_inferred="true"} ! male germ cell
+relationship: develops_from CL:0000020 ! spermatogonium
+
+[Term]
+id: CL:0000018
+name: spermatid
+namespace: cell
+def: "A male germ cell that develops from the haploid secondary spermatocytes. Without further division, spermatids undergo structural changes and give rise to spermatozoa." [MESH:A05.360.490.890.860]
+synonym: "nematoblast" EXACT []
+xref: BTO:0001274
+xref: CALOHA:TS-0950
+xref: EMAPA:31486
+xref: FBbt:00004942
+xref: FMA:72294
+xref: WBbt:0006800
+is_a: CL:0000015 {is_inferred="true"} ! male germ cell
+is_a: CL:0000413 ! haploid cell
+relationship: develops_from CL:0000657 ! secondary spermatocyte
+
+[Term]
+id: CL:0000019
+name: sperm
+namespace: cell
+def: "A mature male germ cell that develops from a spermatid." [GOC:tfm, MESH:A05.360.490.890]
+synonym: "sperm cell" EXACT []
+synonym: "spermatozoid" EXACT []
+synonym: "spermatozoon" EXACT []
+xref: BTO:0001277
+xref: BTO:0002046
+xref: CALOHA:TS-0949
+xref: FBbt:00004954
+xref: FMA:67338
+xref: WBbt:0006798
+is_a: CL:0000064 ! ciliated cell
+is_a: CL:0000219 ! motile cell
+is_a: CL:0000408 {is_inferred="true"} ! male gamete
+relationship: develops_from CL:0000018 ! spermatid
+
+[Term]
+id: CL:0000020
+name: spermatogonium
+namespace: cell
+def: "An euploid male germ cell of an early stage of spermatogenesis." [MESH:A05.360.490.890.900]
+xref: BTO:0000958
+xref: CALOHA:TS-2193
+xref: EMAPA:31482
+xref: FBbt:00004935
+xref: FMA:72291
+is_a: CL:0000015 ! male germ cell
+
+[Term]
+id: CL:0000021
+name: female germ cell
+namespace: cell
+def: "Female germ cell is a germ cell that supports female gamete production." [GOC:tfm, PMID:11023867, PMID:20454446]
+xref: MA:0000388
+xref: ncithesaurus:Egg
+xref: VHOG:0001530
+is_a: CL:0000586 {is_inferred="true"} ! germ cell
+
+[Term]
+id: CL:0000022
+name: female germ line stem cell
+namespace: cell
+is_a: CL:0000014 {is_inferred="true"} ! germ line stem cell
+is_a: CL:0000021 {is_inferred="true"} ! female germ cell
+
+[Term]
+id: CL:0000023
+name: oocyte
+namespace: cell
+def: "A female germ cell that has entered meiosis." [GOC:tfm, ISBN:0721662544]
+synonym: "oogonium" RELATED []
+xref: BTO:0000964
+xref: CALOHA:TS-0711
+xref: FBbt:00004886
+xref: FMA:18644
+xref: WBbt:0006797
+is_a: CL:0000021 {is_inferred="true"} ! female germ cell
+
+[Term]
+id: CL:0000024
+name: oogonial cell
+namespace: cell
+def: "An undifferentiated germ cell that proliferates rapidly and gives rise to oocytes." [GOC:tfm, ISBN:0721662544]
+xref: FMA:83673
+is_a: CL:0000021 {is_inferred="true"} ! female germ cell
+relationship: develops_from CL:0000670 ! primordial germ cell
+
+[Term]
+id: CL:0000025
+name: egg cell
+namespace: cell
+def: "A female gamete where meiosis has progressed to metaphase II and is able to participate in fertilization." [GOC:tfm, ISBN:0721662544]
+synonym: "mature oocyte" EXACT []
+synonym: "ovum" EXACT []
+xref: BTO:0000369
+xref: BTO:0003801
+xref: CALOHA:TS-2191
+xref: FBbt:00057012
+xref: FMA:67343
+xref: MA:0000388
+is_a: CL:0000675 {is_inferred="true"} ! female gamete
+relationship: develops_from CL:0000023 ! oocyte
+
+[Term]
+id: CL:0000026
+name: invertebrate nurse cell
+namespace: cell
+def: "A germline cell that contributes to the development of the oocyte by transferring cytoplasm directly to oocyte." [GOC:tfm, PMID:15848391]
+synonym: "nurse cell" RELATED []
+xref: BTO:0000953
+xref: FBbt:00004878
+is_a: CL:0000039 ! germ line cell
+is_a: CL:0000412 ! polyploid cell
+relationship: develops_from CL:0000722 ! cystoblast
+
+[Term]
+id: CL:0000027
+name: smooth muscle cell neural crest derived
+namespace: cell
+is_a: CL:0000192 {is_inferred="true"} ! smooth muscle cell
+relationship: develops_from CL:0000008 ! migratory cranial neural crest cell
+
+[Term]
+id: CL:0000028
+name: CNS neuron (sensu Nematoda and Protostomia)
+namespace: cell
+is_a: CL:2000029 ! central nervous system neuron
+relationship: develops_from CL:0000338 ! neuroblast (sensu Nematoda and Protostomia)
+
+[Term]
+id: CL:0000029
+name: neuron neural crest derived
+namespace: cell
+is_a: CL:0000540 {is_inferred="true"} ! neuron
+relationship: develops_from CL:0002676 ! neural crest derived neuroblast
+
+[Term]
+id: CL:0000030
+name: glioblast
+namespace: cell
+xref: FBbt:00005145
+is_a: CL:0000055 ! non-terminally differentiated cell
+relationship: develops_from CL:0000133 ! neurectodermal cell
+
+[Term]
+id: CL:0000031
+name: neuroblast
+namespace: cell
+def: "A cell that will develop into a neuron often after a migration phase." [http://en.wikipedia.org/wiki/Neuroblast] {editor="GOC:NV"}
+xref: BTO:0000930
+xref: FBbt:00005146
+xref: FMA:70563
+is_a: CL:0000047 ! neuronal stem cell
+is_a: CL:0000055 ! non-terminally differentiated cell
+
+[Term]
+id: CL:0000032
+name: neuroplacodal cell
+namespace: cell
+def: "A cell of a platelike structure, especially a thickened plate of ectoderm in the early embryo, from which a sense organ develops." [GOC:tfm, ISBN:0618947256]
+synonym: "neural placode cell" EXACT []
+is_a: CL:0002321 ! embryonic cell
+relationship: develops_from CL:0000114 ! surface ectodermal cell
+
+[Term]
+id: CL:0000033
+name: apocrine cell
+namespace: cell
+def: "An apocrine cell is a secretory cell characterized loss of part of the cytoplasm during the process of secretion - secretions are budded off through the plasma membrane producing membrane bound vesicles containing the secreted substance." [GOC:tfm, ISBN:0721662544]
+is_a: CL:0000151 ! secretory cell
+
+[Term]
+id: CL:0000034
+name: stem cell
+namespace: cell
+def: "A relatively undifferentiated cell that retains the ability to divide and proliferate throughout life to provide progenitor cells that can differentiate into specialized cells." [GOC:tfm, MESH:A11.872]
+xref: CALOHA:TS-2086
+xref: FMA:63368
+is_a: CL:0011115 ! precursor cell
+
+[Term]
+id: CL:0000035
+name: single fate stem cell
+namespace: cell
+def: "A stem cell that self-renews as well as give rise to a single mature cell type." [GOC:tfm]
+synonym: "unipotent stem cell" EXACT []
+synonym: "unipotential stem cell" EXACT []
+xref: FMA:70569
+is_a: CL:0000723 ! somatic stem cell
+
+[Term]
+id: CL:0000036
+name: epithelial fate stem cell
+namespace: cell
+is_a: CL:0000035 ! single fate stem cell
+
+[Term]
+id: CL:0000037
+name: hematopoietic stem cell
+namespace: cell
+def: "A stem cell from which all cells of the lymphoid and myeloid lineages develop, including blood cells and cells of the immune system. Hematopoietic stem cells lack cell markers of effector cells (lin-negative). Lin-negative is defined by lacking one or more of the following cell surface markers: CD2, CD3 epsilon, CD4, CD5 ,CD8 alpha chain, CD11b, CD14, CD19, CD20, CD56, ly6G, ter119." [GOC:add, GOC:dsd, GOC:tfm, http://en.wikipedia.org/wiki/Hematopoietic_stem_cell, PMID:19022770]
+comment: Markers differ between species, and two sets of markers have been described for mice. HSCs are reportedly CD34-positive, CD45-positive, CD48-negative, CD150-positive, CD133-positive, and CD244-negative.
+synonym: "blood forming stem cell" EXACT []
+synonym: "colony forming unit hematopoietic" RELATED []
+synonym: "hemopoietic stem cell" EXACT []
+synonym: "HSC" EXACT []
+xref: BTO:0000725
+xref: CALOHA:TS-0448
+xref: FMA:70337
+xref: FMA:86475
+xref: VHOG:0001485
+is_a: CL:0000723 ! somatic stem cell
+is_a: CL:0008001 ! hematopoietic precursor cell
+relationship: develops_from CL:0000566 ! angioblastic mesenchymal cell
+
+[Term]
+id: CL:0000038
+name: erythroid progenitor cell
+namespace: cell
+def: "A progenitor cell committed to the erythroid lineage." [GOC:add, ISBN:0721601464]
+synonym: "BFU-E" RELATED []
+synonym: "blast forming unit erythroid" RELATED []
+synonym: "burst forming unit erythroid" RELATED []
+synonym: "CFU-E" RELATED []
+synonym: "colony forming unit erythroid" RELATED []
+synonym: "erythroid stem cell" RELATED []
+xref: BTO:0004911
+is_a: CL:0000764 ! erythroid lineage cell
+is_a: CL:0000839 {is_inferred="true"} ! myeloid lineage restricted progenitor cell
+relationship: develops_from CL:0000050 ! megakaryocyte-erythroid progenitor cell
+
+[Term]
+id: CL:0000039
+name: germ line cell
+namespace: cell
+def: "A cell that is within the developmental lineage of gametes and is able to pass along its genetic material to offspring." [GOC:tfm, ISBN:0721662544]
+comment: Originally this term had some plant germ line cell children.
+subset: ubprop:upper_level
+is_a: CL:0000548 ! animal cell
+
+[Term]
+id: CL:0000040
+name: monoblast
+namespace: cell
+def: "A myeloid progenitor cell committed to the monocyte lineage. This cell is CD11b-positive, has basophilic cytoplasm, euchromatin, and the presence of a nucleolus." [GOC:add, http://en.wikipedia.org/wiki/Monoblast, http://www.copewithcytokines.de, PMID:1104740]
+comment: Morphology: mononuclear cell, diameter 12-20 _M, non-granular, N/C ratio 3/1 - 4/1; markers: CD11b (shared with many other myeloid cells); location: Adult: bone marrow; fetal: liver, Yolk Sac; role or process: hematopoiesis, monocyte development; lineage: hematopoietic, myeloid.
+synonym: "CFU-M" RELATED []
+synonym: "colony forming unit macrophage" RELATED []
+synonym: "colony forming unit monocyte" RELATED []
+synonym: "monocyte stem cell" RELATED []
+xref: CALOHA:TS-1195
+xref: FMA:83553
+is_a: CL:0000763 ! myeloid cell
+is_a: CL:0002194 {is_inferred="true"} ! monopoietic cell
+relationship: develops_from CL:0002009 ! macrophage dendritic cell progenitor
+
+[Term]
+id: CL:0000041
+name: mature eosinophil
+namespace: cell
+def: "A fully differentiated eosinophil, a granular leukocyte with a nucleus that usually has two lobes connected by one or more slender threads, and cytoplasm containing coarse, round granules that are uniform in size and which can be stained by the dye eosin. Cells are also differentiated from other granulocytes by a small nuclear-to-cytoplasm ratio (1:3). This cell type is CD49d-positive." [GOC:add, GOC:dsd, GOC:tfm, http://www.cap.org, ISBN:0721601464]
+comment: Eosinophils are CD125-positive (IL-5R), GM-CSFR-positive, IL-3R-positive, VLA4-positive. They can also express MHC Class I & II, CD4, CD9, CD11a, CD11b, CD11c, CD13, CD15, CD16, CD17, CD18, CD24, CD25,CD28, CD29, CD32, CD33, CD35, CD37, CD39, CD43, CD44, CD45, CD45RB, CD45RO, CD46, CD47, CD48, CD49d, CD49f, CD50, CD52, CD53, CD54, CD55, CD58, CD59, CD62L, CD63, CD65, CD66, CD69, CD71, CD76, CD80, CD81, CD82, CD86, CD87, CD88, CD89, CD92, CD95, CD97, CD98, CD99, CD100, CD101, CD116, CD117, CD119, CD120, CD123, CD124, CD125, CD131, CD137, CD139, CD148, CD149, CD151, CD153, CD156, CD162, CD161, CD162, CD165, CD174, CD182, CD183, CD191, CD192, CD193, CD196, CD213, IL9R, ad integrin, beta-7 integrin, FceRI, IL13Ra1, TGFbR, PAFR, LTB4R, C3aR, CystLT1R, CystLT2R, fMLPR, CRTH2 (PGD2 receptor), histamine 4R, IDO, KYN, PAR-2, Siglec-8, Siglec-10, LIR1, LIR2, LIR3, LIR7, TLR7, TLR8, and VLA-4. Eosinophils can also secrete CXCL1, eotaxin-1, GM-CSF, IL-2, IL-3, IL-4, IL-5, IL-6, IL-8, IL-10, IL-12, IL-13, IL-16, IL-18, IFN-gamma, LTC4, MIP-1alpha, NGF, PAF, RANTES, substance P, TGF-alpha, TGF-beta, TNF-alpha, and VIP.
+synonym: "mature eosinocyte" EXACT []
+synonym: "mature eosinophil leucocyte" EXACT []
+synonym: "mature eosinophil leukocyte" EXACT []
+synonym: "polymorphonuclear leucocyte" BROAD []
+synonym: "polymorphonuclear leukocyte" BROAD []
+is_a: CL:0000771 {is_inferred="true"} ! eosinophil
+is_a: CL:0002242 ! nucleate cell
+relationship: develops_from CL:0000774 ! band form eosinophil
+
+[Term]
+id: CL:0000042
+name: neutrophilic myeloblast
+namespace: cell
+def: "A myeloblast committed to the neutrophil lineage. This cell type is GATA-1 positive, C/EBPa-positive, AML-1-positive, c-myb-positive and has low expression of PU.1 transcription factor." [GOC:add, ISBN:0721601464, PMID:12560239, PMID:15514007]
+comment: These cells are CD11b-negative, CD15-negative, CD16-negative, CD35-negative, CD49d-positive, CD68-positive, lactotransferrin-negative, and fMLP receptor-negative. They are found in the Band 3 fraction.
+synonym: "neutrophilic granuloblast" RELATED []
+is_a: CL:0000834 ! neutrophil progenitor cell
+is_a: CL:0000835 {is_inferred="true"} ! myeloblast
+
+[Term]
+id: CL:0000043
+name: mature basophil
+namespace: cell
+alt_id: CL:0000739
+def: "A fully differentiated basophil, a granular leukocyte with an irregularly shaped, pale-staining nucleus that is partially constricted into two lobes, and with cytoplasm that contains coarse granules of variable size. Basophils contain vasoactive amines such as histamine and serotonin, which are released on appropriate stimulation." [GOC:add, GOC:dsd, GOC:tfm, http://www.cap.org, ISBN:0721601464, PMID:18466030, PMID:19231594, PMID:20837449]
+comment: Mature basophils are also capable of producing IL-3, IL-5, IL-6, IL-8, IL-13, IL-25, CCL22, tslp, vegf, and LTC4.
+synonym: "mature basophil leucocyte" EXACT []
+synonym: "mature basophil leukocyte" EXACT []
+synonym: "polymorphonuclear leucocyte" BROAD []
+synonym: "polymorphonuclear leukocyte" BROAD []
+xref: BTO:0001026
+xref: CALOHA:TS-0688
+is_a: CL:0000767 {is_inferred="true"} ! basophil
+is_a: CL:0002242 ! nucleate cell
+is_a: CL:0002274 ! histamine secreting cell
+relationship: develops_from CL:0000770 ! band form basophil
+
+[Term]
+id: CL:0000045
+name: obsolete thymus processed stem cell
+namespace: cell
+def: "OBSOLETE (was not defined before being made obsolete)." []
+comment: Consider using term 'pro-T cell ; CL:0000827' or the term 'thymocyte ; CL:0000893' or one of its children instead.
+is_obsolete: true
+
+[Term]
+id: CL:0000046
+name: obsolete bursa processed stem cell
+namespace: cell
+def: "OBSOLETE (was not defined before being made obsolete)." []
+comment: Consider using term 'pro-B cell ; CL:0000826' or the term 'immature B cell ; CL:0000816 or one of its children instead.
+is_obsolete: true
+
+[Term]
+id: CL:0000047
+name: neuronal stem cell
+namespace: cell
+def: "Neural stem cell is characterized as an undifferentiated cell that originates from the neuroectoderm and has the capacity both to perpetually self-renew without differentiating and to generate multiple types of lineage-restricted progenitors." [GOC:tfm, http://en.wikipedia.org/wiki/Neural_stem_cell, MESH:D058953, PMID:15247488]
+synonym: "neural stem cell" EXACT []
+synonym: "NSC" EXACT []
+xref: BTO:0002881
+xref: CALOHA:TS-2360
+xref: FMA:86684
+is_a: CL:0000048 {is_inferred="true"} ! multi fate stem cell
+is_a: CL:0002319 ! neural cell
+relationship: develops_from CL:0000133 ! neurectodermal cell
+relationship: part_of UBERON:0001017 ! central nervous system
+
+[Term]
+id: CL:0000048
+name: multi fate stem cell
+namespace: cell
+def: "A stem cell that can give rise to multiple lineages of cells." [GOC:add]
+synonym: "multi-fate stem cell" EXACT []
+synonym: "multifate stem cell" EXACT []
+synonym: "multipotent cell" EXACT []
+synonym: "multipotent stem cell" EXACT []
+xref: FMA:84789
+is_a: CL:0000034 ! stem cell
+is_a: CL:0002371 ! somatic cell
+
+[Term]
+id: CL:0000049
+name: common myeloid progenitor
+namespace: cell
+def: "A progenitor cell committed to myeloid lineage, including the megakaryocyte and erythroid lineages." [GOC:add, ISBN:0878932437, MESH:D023461]
+comment: This cell type is intended to be compatible with any vertebrate common myeloid progenitor.  For mammalian CMP known to be CD34-positive, please use the term 'common myeloid progenitor, CD34-positive' (CL_0001059).
+synonym: "CFU-GEMM" RELATED [ISBN:0878932437]
+synonym: "CFU-S" RELATED [ISBN:0878932437]
+synonym: "CMP" EXACT [ISBN:0878932437]
+synonym: "colony forming unit granulocyte, erythrocyte, macrophage, and megakaryocyte" RELATED [ISBN:0878932437]
+synonym: "common myeloid precursor" EXACT []
+synonym: "multipotential myeloid stem cell" RELATED [ISBN:0878932437]
+synonym: "myeloid stem cell" RELATED [ISBN:0878932437]
+synonym: "pluripotent stem cell (bone marrow)" RELATED [ISBN:0878932437]
+xref: BTO:0004730
+is_a: CL:0002032 {is_inferred="true"} ! hematopoietic oligopotent progenitor cell
+
+[Term]
+id: CL:0000050
+name: megakaryocyte-erythroid progenitor cell
+namespace: cell
+def: "A progenitor cell committed to the megakaryocyte and erythroid lineages." [GOC:add, GOC:dsd, GOC:tfm, http://en.wikipedia.org/wiki/Megakaryocyte-erythroid_progenitor_cell, MESH:D055015, PMID:16647566]
+comment: MEPs are reportedly CD19-negative, CD34-negative, CD45RA-negative, CD110-positive, CD117-positive, and SCA1-negative and reportedly express the transcription factors GATA-1 and NF-E2.
+synonym: "CFU-EM" EXACT []
+synonym: "CFU-MegE" EXACT []
+synonym: "colony forming unit erythroid megakaryocyte" EXACT []
+synonym: "Meg/E progenitor" EXACT []
+synonym: "megakaryocyte/erythrocyte progenitor" EXACT []
+synonym: "megakaryocyte/erythroid progenitor cell" EXACT []
+synonym: "MEP" EXACT []
+is_a: CL:0000763 ! myeloid cell
+is_a: CL:0002032 {is_inferred="true"} ! hematopoietic oligopotent progenitor cell
+is_a: CL:0011115 ! precursor cell
+
+[Term]
+id: CL:0000051
+name: common lymphoid progenitor
+namespace: cell
+alt_id: CL:0000044
+def: "A oligopotent progenitor cell committed to the lymphoid lineage." [GOC:add, GOC:dsd, GOC:tfm, PMID:10407577, PMID:16551251]
+comment: CLP are CD7-positive, CD10-positive, CD19-negative, CD34-positive, CD45RA-positive, CD79a-negative, CD127-positive, AA4.1-positive, RAG-negative, Sca-1-low, sIgM-negative, sIgD-negative, TdT-negative, Vpre-B-negative, and pre-BCR-negative. Expression of transcription factors include E2A-positive, EBF-positive, Ikaros-negative, PU.1-negative, and Pax5-negative.
+synonym: "CLP" EXACT []
+synonym: "committed lymphopoietic stem cell" RELATED []
+synonym: "common lymphocyte precursor" EXACT []
+synonym: "common lymphocyte progenitor" EXACT []
+synonym: "common lymphoid precursor" EXACT []
+synonym: "early lymphocyte progenitor" RELATED []
+synonym: "ELP" RELATED []
+synonym: "lymphoid stem cell" RELATED []
+synonym: "lymphopoietic stem cell" RELATED []
+is_a: CL:0002032 {is_inferred="true"} ! hematopoietic oligopotent progenitor cell
+is_a: CL:0011115 ! precursor cell
+
+[Term]
+id: CL:0000052
+name: totipotent stem cell
+namespace: cell
+def: "A stem cell from which all cells of the body can form." [GOC:add, GOC:tfm]
+synonym: "totipotential stem cell" EXACT []
+xref: FMA:84790
+is_a: CL:0000723 ! somatic stem cell
+
+[Term]
+id: CL:0000054
+name: bone matrix secreting cell
+namespace: cell
+is_a: CL:0000151 ! secretory cell
+
+[Term]
+id: CL:0000055
+name: non-terminally differentiated cell
+namespace: cell
+def: "A precursor cell with a limited number of potential fates." [SANBI:mhl]
+comment: define using PATO mulit-potent or oligopotent?
+synonym: "blast cell" EXACT []
+xref: BTO:0000125
+xref: FMA:84782
+is_a: CL:0011115 ! precursor cell
+
+[Term]
+id: CL:0000056
+name: myoblast
+namespace: cell
+def: "A cell that is commited to differentiating into a muscle cell.  Embryonic myoblasts develop from the mesoderm. They undergo proliferation, migrate to their various sites, and then differentiate into the appropriate form of myocytes.  Myoblasts also occur as transient populations of cells in muscles undergoing repair." [GOC:tfm, MESH:A11.635, PMID:21849021]
+xref: BTO:0000222
+xref: CALOHA:TS-0650
+xref: FBbt:00005083
+xref: FMA:70335
+xref: VHOG:0001529
+is_a: CL:0000680 ! muscle precursor cell
+
+[Term]
+id: CL:0000057
+name: fibroblast
+namespace: cell
+def: "A connective tissue cell which secretes an extracellular matrix rich in collagen and other macromolecules. Flattened and irregular in outline with branching processes; appear fusiform or spindle-shaped." [http://en.wikipedia.org/wiki/Fibroblast, ISBN:0517223651, MESH:A11.329.228, MESH:D005347]
+comment: These cells may be vimentin-positive, fibronectin-positive, fsp1-positive, MMP-1-positive, collagen I-positive, collagen III-positive, and alpha-SMA-negative.
+xref: BTO:0000452
+xref: CALOHA:TS-0362
+xref: FMA:63877
+xref: VHOG:0001482
+is_a: CL:0002320 ! connective tissue cell
+relationship: develops_from CL:0000134 ! mesenchymal stem cell
+
+[Term]
+id: CL:0000058
+name: chondroblast
+namespace: cell
+def: "Skeletogenic cell that is typically non-terminally differentiated, secretes an avascular, GAG rich matrix; is not buried in cartilage tissue matrix, retains the ability to divide, located adjacent to cartilage tissue (including within the perichondrium), and develops from prechondroblast (and thus prechondrogenic) cell." [GO_REF:0000034, GOC:tfm, ISBN:0618947256]
+synonym: "chrondoplast" EXACT []
+xref: BTO:0003607
+xref: FMA:66783
+is_a: CL:0000055 ! non-terminally differentiated cell
+is_a: CL:0002320 ! connective tissue cell
+relationship: develops_from CL:0007009 ! prechondroblast
+
+[Term]
+id: CL:0000059
+name: ameloblast
+namespace: cell
+alt_id: CL:0000053
+alt_id: CL:0000139
+def: "Skeletogenic cell that produces enamel, overlies the odontogenic papilla, and arises from the differentiation of a preameloblast cell." [GO_REF:0000034, GOC:tfm, MESH:A11.436.107]
+comment: non-encoded relationship from VSAO produces VSAO:0000066
+synonym: "amelocyte" EXACT []
+synonym: "enamel secreting cell" EXACT []
+xref: BTO:0001663
+xref: FMA:70576
+is_a: CL:0000146 ! simple columnar epithelial cell
+is_a: CL:0000151 ! secretory cell
+is_a: CL:0002077 ! ecto-epithelial cell
+relationship: develops_from CL:0007000 ! preameloblast
+relationship: part_of UBERON:0005176 ! tooth enamel organ
+
+[Term]
+id: CL:0000060
+name: odontoblast
+namespace: cell
+def: "Skeletogenic cell that secretes dentine matrix, is derived from the odontogenic papilla, and develops from a preodontoblast cell." [GO_REF:0000034, ISBN:0618947256]
+comment: legacy def: One of the cells forming the outer surface of dental pulp that produces tooth dentin.
+xref: BTO:0001769
+xref: CALOHA:TS-0696
+xref: FMA:62999
+is_a: CL:0000055 ! non-terminally differentiated cell
+is_a: CL:0000710 ! neurecto-epithelial cell
+is_a: CL:0002159 ! general ecto-epithelial cell
+relationship: develops_from CL:0007003 ! preodontoblast
+relationship: part_of UBERON:0005176 ! tooth enamel organ
+
+[Term]
+id: CL:0000061
+name: cementoblast
+namespace: cell
+alt_id: CL:0000859
+def: "Skeletogenic cell that produces cementum (a bony substance that covers the root of a tooth), is part of the odontogenic papilla, and develops from a precementoblast cell." [GO_REF:0000034, ISBN:0781733901]
+comment: Legacy def: A cell of ectomesenchymal origin that aids in the formation the cementum layer on the roots of teeth.
+synonym: "cementum secreting cell" EXACT []
+xref: CALOHA:TS-1164
+xref: FMA:63002
+is_a: CL:0000062 ! osteoblast
+is_a: CL:0000151 ! secretory cell
+relationship: develops_from CL:0007002 ! precementoblast
+relationship: part_of UBERON:0005176 ! tooth enamel organ
+
+[Term]
+id: CL:0000062
+name: osteoblast
+namespace: cell
+def: "Skeletogenic cell that secretes osteoid, is capable of producing mineralized (hydroxyapatite) matrix, is located adjacent to or within osteoid tissue, and arises from the transformation of a preosteoblast cell." [GO_REF:0000034, MESH:A11.329.629]
+comment: non-encoded relationships from VSAO - capable_of_producing VSAO:0000020
+xref: BTO:0001593
+xref: CALOHA:TS-0720
+xref: FMA:66780
+is_a: CL:0000055 ! non-terminally differentiated cell
+is_a: CL:0002320 ! connective tissue cell
+relationship: develops_from CL:0007010 ! preosteoblast
+
+[Term]
+id: CL:0000063
+name: obsolete cell by histology
+namespace: cell
+def: "OBSOLETE: A classification of cells by their microscopic appearance." [FB:ma, GOC:tfm]
+comment: This term was made obsolete because there is no difference in meaning between it and 'cell', as any cell can be classified by its microscopic appearance. If you have used this term in annotation, please replace it with cell (CL:0000000), native cell (CL:0000003), or cell in vitro (CL:0001034) as appropriate.
+is_obsolete: true
+consider: CL:0000000
+consider: CL:0000003
+consider: CL:0001034
+
+[Term]
+id: CL:0000064
+name: ciliated cell
+namespace: cell
+def: "A cell that has a filiform extrusion of the cell surface." [GOC:tfm]
+xref: VHOG:0001532
+xref: XAO:0000031
+is_a: CL:0000003 ! native cell
+
+[Term]
+id: CL:0000065
+name: ependymal cell
+namespace: cell
+def: "A neurectoderm derived cell that lines the neural lumen." [GOC:tfm, JB:jb, PMID:9550134]
+synonym: "ependymocyte" EXACT []
+xref: BTO:0001724
+xref: FMA:70550
+is_a: CL:0000067 ! ciliated epithelial cell
+is_a: CL:0000710 ! neurecto-epithelial cell
+
+[Term]
+id: CL:0000066
+name: epithelial cell
+namespace: cell
+def: "A cell that is usually found in a two-dimensional sheet with a free surface. The cell has a cytoskeleton that allows for tight cell to cell contact and for cell polarity where apical part is directed towards the lumen and the basal part to the basal lamina." [FB:ma, GOC:tfm, MESH:A11.436]
+synonym: "epitheliocyte" EXACT []
+xref: BTO:0000414
+xref: CALOHA:TS-2026
+xref: CARO:0000077
+xref: FBbt:00000124
+xref: FMA:66768
+xref: WBbt:0003672
+is_a: CL:0000548 ! animal cell
+relationship: part_of UBERON:0000483 ! epithelium
+
+[Term]
+id: CL:0000067
+name: ciliated epithelial cell
+namespace: cell
+def: "An epithelial cell that has a cillia." [GOC:tfm]
+xref: FMA:70605
+is_a: CL:0000064 ! ciliated cell
+is_a: CL:0000075 ! columnar/cuboidal epithelial cell
+
+[Term]
+id: CL:0000068
+name: duct epithelial cell
+namespace: cell
+is_a: CL:0000066 ! epithelial cell
+is_a: CL:0002371 ! somatic cell
+relationship: part_of UBERON:0000058 ! duct
+
+[Term]
+id: CL:0000069
+name: branched duct epithelial cell
+namespace: cell
+is_a: CL:0000068 ! duct epithelial cell
+
+[Term]
+id: CL:0000070
+name: obsolete epithelial cell of gland
+namespace: cell
+is_obsolete: true
+
+[Term]
+id: CL:0000071
+name: blood vessel endothelial cell
+namespace: cell
+def: "An endothelial cell that lines the vasculature." [GOC:tfm]
+synonym: "cuboidal endothelial cell of vascular tree" EXACT []
+is_a: CL:0000076 {is_inferred="true"} ! squamous epithelial cell
+is_a: CL:0002139 ! endothelial cell of vascular tree
+relationship: develops_from CL:0002546 ! embryonic blood vessel endothelial progenitor cell
+relationship: part_of UBERON:0004638 ! blood vessel endothelium
+
+[Term]
+id: CL:0000072
+name: non-branched duct epithelial cell
+namespace: cell
+is_a: CL:0000068 ! duct epithelial cell
+is_a: CL:0002078 ! meso-epithelial cell
+
+[Term]
+id: CL:0000073
+name: barrier epithelial cell
+namespace: cell
+is_a: CL:0000066 ! epithelial cell
+is_a: CL:0002371 ! somatic cell
+...
 
[truncated message content]

[Obo-svn-commit] SF.net SVN: obo:[5383] uberon/releases/2016-10-23/

[<cmu...@us...>]

Revision: 5383
          http://sourceforge.net/p/obo/svn/5383
Author:   cmungall
Date:     2016-10-24 19:26:53 +0000 (Mon, 24 Oct 2016)
Log Message:
-----------
new-release

Added Paths:
-----------
    uberon/releases/2016-10-23/

This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.

[Obo-svn-commit] SF.net SVN: obo:[5382] uberon/trunk

[<cmu...@us...>]

Revision: 5382
          http://sourceforge.net/p/obo/svn/5382
Author:   cmungall
Date:     2016-10-24 19:04:10 +0000 (Mon, 24 Oct 2016)
Log Message:
-----------
new release

Modified Paths:
--------------
    uberon/trunk/basic.obo
    uberon/trunk/basic.owl
    uberon/trunk/bridge/uberon-bridge-to-aao.obo
    uberon/trunk/bridge/uberon-bridge-to-aao.owl
    uberon/trunk/bridge/uberon-bridge-to-aeo.obo
    uberon/trunk/bridge/uberon-bridge-to-aeo.owl
    uberon/trunk/bridge/uberon-bridge-to-bila.obo
    uberon/trunk/bridge/uberon-bridge-to-bila.owl
    uberon/trunk/bridge/uberon-bridge-to-caro.obo
    uberon/trunk/bridge/uberon-bridge-to-caro.owl
    uberon/trunk/bridge/uberon-bridge-to-dhba.obo
    uberon/trunk/bridge/uberon-bridge-to-dhba.owl
    uberon/trunk/bridge/uberon-bridge-to-dmba.obo
    uberon/trunk/bridge/uberon-bridge-to-dmba.owl
    uberon/trunk/bridge/uberon-bridge-to-efo.obo
    uberon/trunk/bridge/uberon-bridge-to-efo.owl
    uberon/trunk/bridge/uberon-bridge-to-ehdaa.obo
    uberon/trunk/bridge/uberon-bridge-to-ehdaa.owl
    uberon/trunk/bridge/uberon-bridge-to-ehdaa2.obo
    uberon/trunk/bridge/uberon-bridge-to-ehdaa2.owl
    uberon/trunk/bridge/uberon-bridge-to-emapa.obo
    uberon/trunk/bridge/uberon-bridge-to-emapa.owl
    uberon/trunk/bridge/uberon-bridge-to-fbbt.obo
    uberon/trunk/bridge/uberon-bridge-to-fbbt.owl
    uberon/trunk/bridge/uberon-bridge-to-fbdv.obo
    uberon/trunk/bridge/uberon-bridge-to-fbdv.owl
    uberon/trunk/bridge/uberon-bridge-to-fma.obo
    uberon/trunk/bridge/uberon-bridge-to-fma.owl
    uberon/trunk/bridge/uberon-bridge-to-go.obo
    uberon/trunk/bridge/uberon-bridge-to-go.owl
    uberon/trunk/bridge/uberon-bridge-to-hao.obo
    uberon/trunk/bridge/uberon-bridge-to-hao.owl
    uberon/trunk/bridge/uberon-bridge-to-hba.obo
    uberon/trunk/bridge/uberon-bridge-to-hba.owl
    uberon/trunk/bridge/uberon-bridge-to-ma.obo
    uberon/trunk/bridge/uberon-bridge-to-ma.owl
    uberon/trunk/bridge/uberon-bridge-to-mba.obo
    uberon/trunk/bridge/uberon-bridge-to-mba.owl
    uberon/trunk/bridge/uberon-bridge-to-mfo.obo
    uberon/trunk/bridge/uberon-bridge-to-mfo.owl
    uberon/trunk/bridge/uberon-bridge-to-nifstd.owl
    uberon/trunk/bridge/uberon-bridge-to-og.obo
    uberon/trunk/bridge/uberon-bridge-to-og.owl
    uberon/trunk/bridge/uberon-bridge-to-pba.obo
    uberon/trunk/bridge/uberon-bridge-to-pba.owl
    uberon/trunk/bridge/uberon-bridge-to-sctid.obo
    uberon/trunk/bridge/uberon-bridge-to-sctid.owl
    uberon/trunk/bridge/uberon-bridge-to-spd.obo
    uberon/trunk/bridge/uberon-bridge-to-spd.owl
    uberon/trunk/bridge/uberon-bridge-to-tads.obo
    uberon/trunk/bridge/uberon-bridge-to-tads.owl
    uberon/trunk/bridge/uberon-bridge-to-tao.obo
    uberon/trunk/bridge/uberon-bridge-to-tao.owl
    uberon/trunk/bridge/uberon-bridge-to-tgma.obo
    uberon/trunk/bridge/uberon-bridge-to-tgma.owl
    uberon/trunk/bridge/uberon-bridge-to-vhog.owl
    uberon/trunk/bridge/uberon-bridge-to-vsao.obo
    uberon/trunk/bridge/uberon-bridge-to-vsao.owl
    uberon/trunk/bridge/uberon-bridge-to-wbbt.obo
    uberon/trunk/bridge/uberon-bridge-to-wbbt.owl
    uberon/trunk/bridge/uberon-bridge-to-wbls.obo
    uberon/trunk/bridge/uberon-bridge-to-wbls.owl
    uberon/trunk/bridge/uberon-bridge-to-xao.obo
    uberon/trunk/bridge/uberon-bridge-to-xao.owl
    uberon/trunk/bridge/uberon-bridge-to-zfa.obo
    uberon/trunk/bridge/uberon-bridge-to-zfa.owl
    uberon/trunk/bridge/uberon-bridge-to-zfs.obo
    uberon/trunk/bridge/uberon-bridge-to-zfs.owl
    uberon/trunk/chebi_import.owl
    uberon/trunk/cl_import.owl
    uberon/trunk/composite-metazoan-basic.obo
    uberon/trunk/composite-metazoan.obo
    uberon/trunk/composite-metazoan.owl
    uberon/trunk/composite-vertebrate.obo
    uberon/trunk/composite-vertebrate.owl
    uberon/trunk/core.obo
    uberon/trunk/core.owl
    uberon/trunk/depictions.owl
    uberon/trunk/diffs/uberon-diff.md
    uberon/trunk/ext.obo
    uberon/trunk/ext.owl
    uberon/trunk/go_import.owl
    uberon/trunk/merged.obo
    uberon/trunk/merged.owl
    uberon/trunk/ncbitaxon_import.owl
    uberon/trunk/pato_import.owl
    uberon/trunk/pr_import.owl
    uberon/trunk/reports/stages-human-report.tsv
    uberon/trunk/reports/stages-metazoan-report.tsv
    uberon/trunk/reports/stages-mouse-report.tsv
    uberon/trunk/reports/stages-xenopus-report.tsv
    uberon/trunk/ro_import.owl
    uberon/trunk/subsets/amniote-basic.obo
    uberon/trunk/subsets/amniote-basic.owl
    uberon/trunk/subsets/appendicular-minimal.obo
    uberon/trunk/subsets/circulatory-minimal.obo
    uberon/trunk/subsets/cranial-minimal.obo
    uberon/trunk/subsets/cumbo.obo
    uberon/trunk/subsets/cumbo.owl
    uberon/trunk/subsets/digestive-minimal.obo
    uberon/trunk/subsets/efo-slim.obo
    uberon/trunk/subsets/efo-slim.owl
    uberon/trunk/subsets/euarchontoglires-basic.obo
    uberon/trunk/subsets/euarchontoglires-basic.owl
    uberon/trunk/subsets/excretory-minimal.obo
    uberon/trunk/subsets/immune-minimal.obo
    uberon/trunk/subsets/life-stages-composite.obo
    uberon/trunk/subsets/life-stages-core.owl
    uberon/trunk/subsets/mouse-view.owl
    uberon/trunk/subsets/musculoskeletal-minimal.obo
    uberon/trunk/subsets/nervous-minimal.obo
    uberon/trunk/subsets/pulmonary-minimal.obo
    uberon/trunk/subsets/reproductive-minimal.obo
    uberon/trunk/subsets/sensory-minimal.obo
    uberon/trunk/subsets/uberon-with-isa-for-FMA-MA-ZFA.obo
    uberon/trunk/uberon.obo
    uberon/trunk/uberon.owl

Modified: uberon/trunk/basic.obo
===================================================================
--- uberon/trunk/basic.obo	2016-09-08 14:42:39 UTC (rev 5381)
+++ uberon/trunk/basic.obo	2016-10-24 19:04:10 UTC (rev 5382)
@@ -1,6 +1,6 @@
 format-version: 1.2
-data-version: uberon/releases/2016-09-07/basic.owl
-date: 07:09:2016 23:09
+data-version: uberon/releases/2016-10-23/basic.owl
+date: 23:10:2016 18:16
 saved-by: cjm
 subsetdef: cumbo "CUMBO"
 subsetdef: cyclostome_subset "cyclostome structures"
@@ -36,6 +36,7 @@
 synonymtypedef: HUMAN_PREFERRED "preferred term when talking about an instance of this class in Homo sapiens"
 synonymtypedef: INCONSISTENT "indicates that a synonym is used in an inconsistent or confusing way, typically between species"
 synonymtypedef: LATIN "latin term"
+synonymtypedef: MISSPELLING "a mis-spelling that is in common use and thus recorded"
 synonymtypedef: NON_AMNIOTE "synonym that is inappropriate for amniotes"
 synonymtypedef: NON_MAMMAL "synonym that is inappropriate for mammals"
 synonymtypedef: PENDING_REVIEW "expert consultation and attribution required"
@@ -45,8 +46,8 @@
 default-namespace: uberon
 remark: Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/TEMP>) VersionIRI(<null>))) [Axioms: 437 Logical Axioms: 0]
 remark: Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/uberon-bridge-to-bfo.owl>) VersionIRI(<null>))) [Axioms: 20 Logical Axioms: 9]
-remark: Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/uberon/ext.owl>) VersionIRI(<null>))) [Axioms: 25783 Logical Axioms: 4722]
-remark: Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/uberon/insect-anatomy.owl>) VersionIRI(<null>))) [Axioms: 2098 Logical Axioms: 685]
+remark: Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/uberon/ext.owl>) VersionIRI(<null>))) [Axioms: 25782 Logical Axioms: 4720]
+remark: Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/uberon/insect-anatomy.owl>) VersionIRI(<null>))) [Axioms: 2167 Logical Axioms: 686]
 treat-xrefs-as-equivalent: AEO
 treat-xrefs-as-equivalent: BILA
 treat-xrefs-as-equivalent: BSPO
@@ -192,6 +193,7 @@
 xref: ZFA:0000047
 is_a: UBERON:0002268 ! olfactory organ
 is_a: UBERON:0004121 ! ectoderm-derived structure
+is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
 relationship: develops_from UBERON:0003050 {source="ZFA"} ! olfactory placode
 relationship: part_of UBERON:0001456 {source="FMA", source="ZFA-def"} ! face
 
@@ -1767,7 +1769,9 @@
 synonym: "glomerular tuft" RELATED INCONSISTENT []
 synonym: "glomerulus" BROAD []
 synonym: "glomerulus renis" RELATED LATIN [http://en.wikipedia.org/wiki/Glomerulus]
-synonym: "Malphigian glomerulus" RELATED [BTO:0000530]
+synonym: "Malphigian glomerulus" RELATED MISSPELLING [BTO:0000530]
+synonym: "Malpighian glomerulus" RELATED [http://medical-dictionary.thefreedictionary.com/malpighian+glomerulus]
+synonym: "Malpighian tuft" RELATED [http://medical-dictionary.thefreedictionary.com/malpighian+glomerulus]
 synonym: "renal corpuscle" RELATED INCONSISTENT []
 synonym: "renal glomeruli" EXACT [TAO:0001288]
 xref: :C13250
@@ -2809,7 +2813,6 @@
 xref: http://www.snomedbrowser.com/Codes/Details/280735005
 xref: Transverse:foramen
 is_a: UBERON:0004111 {source="FMA"} ! anatomical conduit
-is_a: UBERON:0004120 ! mesoderm-derived structure
 is_a: UBERON:0005744 ! bone foramen
 relationship: part_of UBERON:0001077 ! transverse process of vertebra
 relationship: part_of UBERON:0002413 ! cervical vertebra
@@ -3215,6 +3218,7 @@
 xref: XAO:0000126
 xref: ZFA:0001027
 is_a: UBERON:0002553 ! anatomical cavity
+relationship: part_of UBERON:0000165 ! mouth
 
 [Term]
 id: UBERON:0000168
@@ -3717,7 +3721,6 @@
 xref: ncithesaurus:Atlanto-occipital_Joint-Atlanto
 xref: UMLS:C0004169 {source="ncithesaurus:Atlanto-occipital_Joint"}
 is_a: UBERON:0002217 ! synovial joint
-is_a: UBERON:0004120 ! mesoderm-derived structure
 is_a: UBERON:0015212 ! lateral structure
 
 [Term]
@@ -3782,12 +3785,14 @@
 xref: Tendon:sheath
 xref: UMLS:C0224856 {source="ncithesaurus:Tendon_Sheath"}
 is_a: UBERON:0004923 ! organ component layer
+relationship: part_of UBERON:0000043 ! tendon
 
 [Term]
 id: UBERON:0000305
 name: amnion
 def: "the thin innermost layer of the extraembryonic membranes that contains the amniotic fluid; the membrane forms a closed sac in which the embryo and later, the fetus, is suspended and protected" [MGI:csmith, MP:0005029]
 subset: pheno_slim
+synonym: "amnios" EXACT [http://placentation.ucsd.edu/glossfs.html]
 xref: :C12365
 xref: BTO:0000065
 xref: CALOHA:TS-0033
@@ -4005,13 +4010,13 @@
 [Term]
 id: UBERON:0000319
 name: cytotrophoblast
-def: "The cytotrophoblast (or layer of Langhans) is the inner layer of the trophoblast, interior to the syncytiotrophoblast in an embryo. It serves to anchor the embryonic chorion to the maternal endometrium. Cytotrophoblasts are stem cells in the chorionic villi. During differentiation, mononuclear cytotrophoblast fuse together into the multinucleated syncytiotrophoblasts. The primary villi has only the cytotrophoblast as an axe. [WP,unvetted]." [http://en.wikipedia.org/wiki/Cytotrophoblast]
+def: "The inner layer of the trophoblast, interior to the syncytiotrophoblast in an embryo. It serves to anchor the embryonic chorion to the maternal endometrium. Cytotrophoblasts are stem cells in the chorionic villi. During differentiation, mononuclear cytotrophoblast fuse together into the multinucleated syncytiotrophoblasts. The primary villi has only the cytotrophoblast as an axe. [WP,unvetted]." [http://en.wikipedia.org/wiki/Cytotrophoblast, http://placentation.ucsd.edu/glossfs.html]
 synonym: "cellular trophoblast" EXACT [FMA:83039]
 synonym: "cytotrophoblastic cell" RELATED [FMA:83039]
 synonym: "cytotrophoblastic cell layer" EXACT [https://orcid.org/0000-0002-6601-2165]
 synonym: "cytotrophoblastus" RELATED LATIN [http://en.wikipedia.org/wiki/Cytotrophoblast]
-synonym: "Langhans' layer" RELATED [BTO:0000322]
-synonym: "layer of Langhans" RELATED []
+synonym: "Langhans' layer" RELATED [http://en.wikipedia.org/wiki/Cytotrophoblast]
+synonym: "layer of Langhans" RELATED [http://en.wikipedia.org/wiki/Cytotrophoblast]
 xref: :C33919
 xref: BTO:0000322
 xref: EHDAA:127
@@ -4450,7 +4455,6 @@
 xref: FMA:55031
 xref: http://www.snomedbrowser.com/Codes/Details/362121003
 xref: MA:0003143
-is_a: UBERON:0004119 ! endoderm-derived structure
 is_a: UBERON:0004785 ! respiratory system mucosa
 intersection_of: UBERON:0000344 ! mucosa
 intersection_of: part_of UBERON:0001042 ! chordate pharynx
@@ -5065,7 +5069,6 @@
 xref: MESH:A02.165.507.411
 xref: OpenCyc:Mx4rvVjxE5wpEbGdrcN5Y29ycA
 xref: UMLS:C0014540 {source="ncithesaurus:Epiglottis"}
-is_a: UBERON:0004119 ! endoderm-derived structure
 is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
 is_a: UBERON:0013522 ! subdivision of tube
 relationship: develops_from UBERON:0003115 {source="EHDAA2"} ! pharyngeal arch 4
@@ -5238,7 +5241,6 @@
 xref: FMA:32567
 is_a: UBERON:0002418 ! cartilage tissue
 is_a: UBERON:0003837 ! thoracic segment connective tissue
-is_a: UBERON:0004120 ! mesoderm-derived structure
 intersection_of: UBERON:0002418 ! cartilage tissue
 intersection_of: part_of UBERON:0000975 ! sternum
 relationship: part_of UBERON:0000975 ! sternum
@@ -5301,7 +5303,6 @@
 xref: http://en.wikipedia.org/wiki/Ramus_of_the_mandible
 xref: http://www.snomedbrowser.com/Codes/Details/361739000
 xref: MA:0002815
-is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure
 is_a: UBERON:0005913 ! zone of bone organ
 is_a: UBERON:0010313 ! neural crest-derived structure
 relationship: part_of UBERON:0001684 ! mandible
@@ -5477,7 +5478,6 @@
 xref: http://www.snomedbrowser.com/Codes/Details/320101005
 xref: UMLS:C0221931 {source="ncithesaurus:Dermal_Papilla"}
 is_a: UBERON:0000479 ! tissue
-is_a: UBERON:0004120 ! mesoderm-derived structure
 is_a: UBERON:0004121 ! ectoderm-derived structure
 relationship: part_of UBERON:0001992 ! papillary layer of dermis
 
@@ -6043,10 +6043,10 @@
 synonym: "ramus sinus cavernosi (pars cavernosa) (arteria carotis interna)" EXACT LATIN [FMA:70527, FMA:TA]
 xref: BTO:0002996
 xref: FMA:70527
-is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
 is_a: UBERON:0003496 ! head blood vessel
 is_a: UBERON:0004573 ! systemic artery
 is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
+relationship: part_of UBERON:0001532 ! internal carotid artery
 
 [Term]
 id: UBERON:0000458
@@ -6060,6 +6060,7 @@
 xref: UMLS:C0227837 {source="ncithesaurus:Endocervix"}
 is_a: UBERON:0000064 ! organ part
 is_a: UBERON:0005156 ! reproductive structure
+relationship: part_of UBERON:0000002 ! uterine cervix
 
 [Term]
 id: UBERON:0000459
@@ -7571,6 +7572,7 @@
 xref: nlx:146329
 xref: WBbt:0005829
 is_a: UBERON:0005053 ! primary nerve cord
+relationship: part_of UBERON:0013235 ! ventrum
 
 [Term]
 id: UBERON:0000935
@@ -7663,14 +7665,14 @@
 [Term]
 id: UBERON:0000939
 name: imaginal disc
-def: "one of the parts of a holometabolous insect larva that will become a portion of the outside of the adult insect during the pupal transformation." [http://en.wikipedia.org/wiki/Imaginal_disc]
+def: "one of the parts of a holometabolous insect larva that will become a portion of the outside of the adult insect during the pupal transformation." [Wikipedia:Imaginal_disc]
 subset: uberon_slim
 synonym: "imaginal disk" RELATED []
 xref: BTO:0004658
 xref: FBbt:00001761
-xref: Imaginal:disc
 xref: MAT:0000064
 xref: MIAA:0000064
+xref: Wikipedia:Imaginal_disc
 is_a: UBERON:0007499 {source="FBbt text definition"} ! epithelial sac
 relationship: part_of UBERON:0002548 ! larva
 
@@ -8577,7 +8579,6 @@
 xref: OpenCyc:Mx4rvVjO6JwpEbGdrcN5Y29ycA
 xref: UMLS:C0038293 {source="ncithesaurus:Sternum"}
 xref: VHOG:0000856
-is_a: UBERON:0004120 ! mesoderm-derived structure
 is_a: UBERON:0005181 ! thoracic segment organ
 is_a: UBERON:0010363 {source="ISBN10:0073040584"} ! endochondral element
 relationship: part_of UBERON:0003252 {source="FMA"} ! thoracic rib cage
@@ -8860,7 +8861,6 @@
 is_a: UBERON:0000023 ! wing
 intersection_of: UBERON:0000023 ! wing
 intersection_of: develops_from UBERON:0000939 ! imaginal disc
-relationship: develops_from UBERON:0000939 ! imaginal disc
 
 [Term]
 id: UBERON:0000985
@@ -10491,7 +10491,6 @@
 xref: VHOG:0000462
 xref: XAO:0003227
 xref: ZFA:0000056
-is_a: UBERON:0004185 ! endodermal part of digestive tract
 is_a: UBERON:0006562 ! pharynx
 relationship: develops_from UBERON:0009145 {source="EHDAA2"} ! pharyngeal region of foregut
 relationship: part_of UBERON:0001004 ! respiratory system
@@ -10744,7 +10743,6 @@
 xref: OpenCyc:Mx4rvq5O0JwpEbGdrcN5Y29ycA
 xref: UMLS:C0020629 {source="ncithesaurus:Hypopharynx"}
 xref: VHOG:0000445
-is_a: UBERON:0004119 ! endoderm-derived structure
 is_a: UBERON:0013522 ! subdivision of tube
 relationship: part_of UBERON:0001042 ! chordate pharynx
 
@@ -10809,7 +10807,8 @@
 def: "A tubule that extends from the posterior part of the digestive tract which absorbs solutes, water, and wastes from the surrounding hemolymph. Each tubule consists of a single layer of cells that is closed off at the distal end with the proximal end joining the alimentary canal at the junction between the midgut and hindgut[WP,modified]." [http://en.wikipedia.org/wiki/Malpighian_tubule_system]
 subset: efo_slim
 subset: uberon_slim
-synonym: "Malphigian tube" RELATED [BTO:0000810]
+synonym: "Malphigian tube" RELATED MISSPELLING [BTO:0000810]
+synonym: "Malpighian tube" RELATED [UBERON:cjm]
 synonym: "tuba Malpighii" RELATED [BTO:0000810]
 xref: BTO:0000810
 xref: EFO:0000243
@@ -11067,7 +11066,6 @@
 xref: UMLS:C0224521 {source="ncithesaurus:Facet_Joint"}
 xref: Zygapophysial:joint
 is_a: UBERON:0002217 ! synovial joint
-is_a: UBERON:0004120 ! mesoderm-derived structure
 relationship: part_of UBERON:0003861 ! neural arch
 
 [Term]
@@ -11141,7 +11139,6 @@
 xref: UMLS:C0007275 {source="ncithesaurus:External_Carotid_Artery"}
 xref: VHOG:0000265
 xref: XAO:0000345
-is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
 is_a: UBERON:0005396 {source="MA"} ! carotid artery segment
 is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
 relationship: develops_from UBERON:0001530 {source="EHDAA2"} ! common carotid artery plus branches
@@ -12144,7 +12141,6 @@
 xref: UMLS:C0021724 {source="ncithesaurus:Intercostal_Muscle"}
 xref: VHOG:0000903
 is_a: UBERON:0001630 ! muscle organ
-is_a: UBERON:0004120 ! mesoderm-derived structure
 is_a: UBERON:0005175 ! chest organ
 relationship: develops_from UBERON:0010970 {source="EHDAA2"} ! intercostal pre-muscle mass
 
@@ -12174,6 +12170,7 @@
 xref: UMLS:C0224362 {source="ncithesaurus:Musculus_Latissimus_Dorsi"}
 xref: VHOG:0000930
 is_a: UBERON:0001482 ! muscle of shoulder
+is_a: UBERON:0004120 ! mesoderm-derived structure
 is_a: UBERON:0034908 ! scapular muscle
 relationship: develops_from UBERON:0010982 {source="EHDAA2"} ! latissimus dorsi pre-muscle mass
 relationship: part_of UBERON:0008713 {source="EHDAA2"} ! pectoral girdle and thoracic body wall skeletal muscle
@@ -12532,6 +12529,7 @@
 xref: VHOG:0000853
 is_a: UBERON:0002377 ! muscle of neck
 is_a: UBERON:0003897 ! axial muscle
+is_a: UBERON:0004120 ! mesoderm-derived structure
 is_a: UBERON:0011364 ! cleidocephalicus muscle
 relationship: develops_from UBERON:0010987 ! sterno-mastoid pre-muscle mass
 
@@ -12557,6 +12555,7 @@
 xref: UMLS:C0584884 {source="ncithesaurus:Subscapularis"}
 xref: VHOG:0000850
 is_a: UBERON:0001482 ! muscle of shoulder
+is_a: UBERON:0004120 ! mesoderm-derived structure
 is_a: UBERON:0010891 ! pectoral complex muscle
 relationship: develops_from UBERON:0010993 ! subscapularis pre-muscle mass
 relationship: part_of UBERON:0003683 {source="Wikipedia"} ! rotator cuff
@@ -12606,7 +12605,6 @@
 xref: XAO:0003074
 xref: ZFA:0001559
 is_a: UBERON:0000075 ! subdivision of skeletal system
-is_a: UBERON:0004120 ! mesoderm-derived structure
 disjoint_from: UBERON:0008260 ! spine appendage
 relationship: part_of UBERON:0011138 {source="cjm"} ! postcranial axial skeletal system
 
@@ -12624,8 +12622,8 @@
 xref: OpenCyc:Mx4rv_EvQZwpEbGdrcN5Y29ycA
 xref: Vertebral:foramen
 is_a: UBERON:0004111 ! anatomical conduit
-is_a: UBERON:0004120 ! mesoderm-derived structure
 relationship: part_of UBERON:0006692 ! vertebral canal
+relationship: part_of UBERON:0010913 ! vertebral element
 
 [Term]
 id: UBERON:0001132
@@ -13826,6 +13824,7 @@
 xref: VHOG:0000852
 is_a: UBERON:0035809 ! serous cavity
 relationship: develops_from UBERON:0003887 {source="Wikipedia"} ! intraembryonic coelom
+relationship: part_of UBERON:0035820 ! peritoneal sac
 
 [Term]
 id: UBERON:0001180
@@ -14182,6 +14181,8 @@
 xref: MA:0002007
 xref: UMLS:C0226328 {source="ncithesaurus:Middle_Colic_Artery"}
 is_a: UBERON:0004573 ! systemic artery
+relationship: part_of UBERON:0001182 ! superior mesenteric artery
+relationship: part_of UBERON:0018255 ! jejunal artery
 
 [Term]
 id: UBERON:0001197
@@ -14198,6 +14199,8 @@
 xref: MA:0001970
 xref: UMLS:C0226323 {source="ncithesaurus:Ileo-colic_Artery"}
 is_a: UBERON:0004573 ! systemic artery
+relationship: part_of UBERON:0001182 ! superior mesenteric artery
+relationship: part_of UBERON:0018255 ! jejunal artery
 
 [Term]
 id: UBERON:0001198
@@ -14216,6 +14219,7 @@
 xref: UMLS:C0580876 {source="ncithesaurus:Superior_Suprarenal_Artery"}
 is_a: UBERON:0004573 ! systemic artery
 is_a: UBERON:0005624 ! suprarenal artery
+relationship: part_of UBERON:0012255 ! inferior phrenic artery
 
 [Term]
 id: UBERON:0001199
@@ -14736,6 +14740,7 @@
 xref: MA:0002181
 xref: OpenCyc:Mx4rvywYIpwpEbGdrcN5Y29ycA
 is_a: UBERON:0002017 ! portal vein
+relationship: part_of UBERON:0001138 ! superior mesenteric vein
 
 [Term]
 id: UBERON:0001219
@@ -14952,8 +14957,7 @@
 synonym: "corpusculum renis" RELATED LATIN [http://en.wikipedia.org/wiki/Renal_corpuscle]
 synonym: "cortical renal corpuscle" RELATED [MA:0000376]
 synonym: "kidney corpuscle" RELATED [http://en.wikipedia.org/wiki/Renal_corpuscle]
-synonym: "malphighian corpuscle" RELATED [MA:0000376]
-synonym: "Malphigian corpuscle" EXACT []
+synonym: "Malphigian corpuscle" EXACT MISSPELLING [MA:0000376]
 synonym: "Malpighian corpuscle" EXACT [ZFA:0005281]
 xref: :C33456
 xref: BTO:0000333
@@ -14987,7 +14991,8 @@
 synonym: "Bowmans capsule" EXACT [KUPO:0001001]
 synonym: "capsula glomerularis" EXACT LATIN []
 synonym: "capsula glomeruli" RELATED LATIN []
-synonym: "Malphigian capsule" RELATED [BTO:0002297]
+synonym: "Malphigian capsule" RELATED MISSPELLING [BTO:0002297]
+synonym: "Malpighian capsule" RELATED [UBERO:cjm]
 synonym: "Mueller capsule" RELATED [BTO:0002297]
 synonym: "Muellerian capsule" RELATED [BTO:0002297]
 synonym: "pronephric glomerular capsule" RELATED [TAO:0005310]
@@ -15451,6 +15456,7 @@
 is_a: UBERON:0000161 ! orifice
 is_a: UBERON:0004121 ! ectoderm-derived structure
 relationship: develops_from UBERON:0000931 ! proctodeum
+relationship: part_of UBERON:0001555 ! digestive tract
 
 [Term]
 id: UBERON:0001246
@@ -17048,6 +17054,7 @@
 xref: UMLS:C0227877 {source="ncithesaurus:Ovarian_Capsule"}
 is_a: UBERON:0003893 ! capsule
 is_a: UBERON:0005156 ! reproductive structure
+relationship: part_of UBERON:0000992 ! female gonad
 
 [Term]
 id: UBERON:0001308
@@ -17970,7 +17977,6 @@
 xref: Lacrimal:sac
 xref: MA:0001298
 xref: UMLS:C0229289 {source="ncithesaurus:Lacrimal_Sac"}
-is_a: UBERON:0004119 ! endoderm-derived structure
 is_a: UBERON:0004121 ! ectoderm-derived structure
 is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
 is_a: UBERON:0034944 ! zone of organ
@@ -18052,6 +18058,7 @@
 xref: UMLS:C0226401 {source="ncithesaurus:Inferior_Epigastric_Artery"}
 is_a: UBERON:0004573 ! systemic artery
 is_a: UBERON:0006349 ! epigastric artery
+relationship: part_of UBERON:0001308 ! external iliac artery
 
 [Term]
 id: UBERON:0001355
@@ -18068,6 +18075,7 @@
 xref: MA:0002027
 xref: UMLS:C0226455 {source="ncithesaurus:Deep_Femoral_Artery"}
 is_a: UBERON:0004573 ! systemic artery
+relationship: part_of UBERON:0002060 ! femoral artery
 relationship: part_of UBERON:0035551 ! deep vasculature
 
 [Term]
@@ -19383,6 +19391,8 @@
 [Term]
 id: UBERON:0001420
 name: subscapular vein
+def: "a vein formed by the confluence of the thoracodorsal and circumflex scapular veins and accompanying the subscapular artery to drain into the axillary vein." [http://www.medilexicon.com/medicaldictionary.php?t=97509]
+synonym: "vena subscapularis" EXACT LATIN []
 xref: FMA:23113
 xref: MA:0002224
 is_a: UBERON:0001638 ! vein
@@ -19430,6 +19440,7 @@
 intersection_of: UBERON:0001473 ! lymphatic vessel
 intersection_of: part_of UBERON:0001456 ! face
 relationship: part_of UBERON:0001456 ! face
+relationship: part_of UBERON:0011363 ! cranial lymph vasculature
 
 [Term]
 id: UBERON:0001423
@@ -19493,17 +19504,20 @@
 id: UBERON:0001425
 name: pectoral lymphatic vessel
 subset: vertebrate_core
-synonym: "PL" RELATED []
+synonym: "PL" RELATED ABBREVIATION []
 xref: FMA:234865
 xref: TAO:0005107
 xref: ZFA:0005107
 is_a: UBERON:0001473 ! lymphatic vessel
+intersection_of: UBERON:0001473 ! lymphatic vessel
+intersection_of: part_of UBERON:0001421 ! pectoral girdle region
+relationship: part_of UBERON:0001421 ! pectoral girdle region
 
 [Term]
 id: UBERON:0001426
 name: jugular lymphatic vessel
 subset: vertebrate_core
-synonym: "JL" RELATED []
+synonym: "JL" RELATED ABBREVIATION []
 synonym: "JLV" BROAD ABBREVIATION [ZFA:0005109]
 xref: FMA:234908
 xref: TAO:0005109
@@ -19995,6 +20009,7 @@
 is_a: UBERON:0006717 ! autopodial skeleton
 disjoint_from: UBERON:0001445 {source="lexical"} ! skeleton of pes
 relationship: part_of UBERON:0001440 {source="EHDAA2"} ! forelimb skeleton
+relationship: part_of UBERON:0002398 ! manus
 property_value: dc-contributor https://github.com/cmungall
 property_value: dc-contributor https://github.com/mellybelly
 
@@ -20068,6 +20083,7 @@
 xref: VSAO:0005021
 is_a: UBERON:0006717 ! autopodial skeleton
 relationship: part_of UBERON:0001441 {source="EHDAA2"} ! hindlimb skeleton
+relationship: part_of UBERON:0002387 ! pes
 property_value: dc-contributor https://github.com/cmungall
 property_value: dc-contributor https://github.com/mellybelly
 
@@ -20754,7 +20770,6 @@
 xref: MA:0001514
 xref: UMLS:C1182940 {source="ncithesaurus:Vertebral_Joint"}
 is_a: UBERON:0002216 {source="FMA"} ! symphysis
-is_a: UBERON:0004120 ! mesoderm-derived structure
 relationship: part_of UBERON:0001130 {source="FMA"} ! vertebral column
 
 [Term]
@@ -20963,6 +20978,7 @@
 xref: UMLS:C0224234 {source="ncithesaurus:Deltoid"}
 xref: VHOG:0000846
 is_a: UBERON:0001482 {source="FMA"} ! muscle of shoulder
+is_a: UBERON:0004120 ! mesoderm-derived structure
 is_a: UBERON:0034908 ! scapular muscle
 relationship: develops_from UBERON:0006219 {source="EHDAA2"} ! deltoid pre-muscle mass
 relationship: part_of UBERON:0008713 {source="EHDAA2"} ! pectoral girdle and thoracic body wall skeletal muscle
@@ -21013,6 +21029,7 @@
 xref: OpenCyc:Mx4rwJZqBJwpEbGdrcN5Y29ycA
 xref: UMLS:C0224232 {source="ncithesaurus:Teres_Major_Muscle"}
 xref: VHOG:0000750
+is_a: UBERON:0004120 ! mesoderm-derived structure
 is_a: UBERON:0010467 ! teres muscle
 relationship: develops_from UBERON:0010988 {source="EHDAA2"} ! teres major pre-muscle mass
 
@@ -21403,6 +21420,7 @@
 xref: MESH:D010369
 xref: UMLS:C0030747 {source="ncithesaurus:Pectoralis_Muscle"}
 is_a: UBERON:0003830 ! thoracic segment muscle
+is_a: UBERON:0004120 ! mesoderm-derived structure
 is_a: UBERON:0008196 {source="FMA"} ! muscle of pectoral girdle
 relationship: develops_from UBERON:0010984 ! pectoral pre-muscle mass
 relationship: part_of UBERON:0004464 {source="BTO"} ! musculature of thorax
@@ -21676,7 +21694,6 @@
 xref: http://www.snomedbrowser.com/Codes/Details/181300001
 xref: MA:0000475
 xref: VHOG:0001196
-is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
 is_a: UBERON:0001515 ! thoracic aorta
 is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
 relationship: develops_from UBERON:0003121 {notes="left arch 4 in human", source="embryology.ch"} ! pharyngeal arch artery 4
@@ -22151,7 +22168,6 @@
 xref: MESH:D017536
 xref: UMLS:C0162859 {source="ncithesaurus:Common_Carotid_Artery"}
 xref: VHOG:0000272
-is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
 is_a: UBERON:0004573 {source="FMA"} ! systemic artery
 is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
 relationship: develops_from UBERON:0004363 {source="Wikipedia"} ! pharyngeal arch artery
@@ -22210,7 +22226,6 @@
 xref: VHOG:0000267
 xref: XAO:0000366
 xref: ZFA:0005081
-is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
 is_a: UBERON:0003496 ! head blood vessel
 is_a: UBERON:0005396 {source="MA"} ! carotid artery segment
 is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
@@ -22599,6 +22614,7 @@
 xref: MA:0001998
 xref: UMLS:C0226495 {source="ncithesaurus:Medial_Tarsal_Artery"}
 is_a: UBERON:0001637 ! artery
+is_a: UBERON:0003521 ! pes blood vessel
 
 [Term]
 id: UBERON:0001554
@@ -22685,6 +22701,7 @@
 xref: OpenCyc:Mx4rtT2HwgJMEdyAAADggVbxzQ
 xref: VHOG:0000406
 is_a: UBERON:0000072 ! proximo-distal subdivision of respiratory tract
+is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
 
 [Term]
 id: UBERON:0001558
@@ -22890,9 +22907,9 @@
 xref: MA:0001768
 xref: MESH:D007821
 xref: UMLS:C0023054 {source="ncithesaurus:Laryngeal_Muscle"}
-is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
 is_a: UBERON:0002377 ! muscle of neck
 is_a: UBERON:0003831 ! respiratory system muscle
+is_a: UBERON:0004119 ! endoderm-derived structure
 intersection_of: UBERON:0014892 ! skeletal muscle organ
 intersection_of: part_of UBERON:0001737 ! larynx
 relationship: part_of UBERON:0004478 {source="prolog"} ! musculature of larynx
@@ -22957,6 +22974,7 @@
 xref: UMLS:C0224194 {source="ncithesaurus:Genioglossus"}
 xref: VHOG:0000847
 is_a: UBERON:0001575 {source="FMA"} ! extrinsic muscle of tongue
+is_a: UBERON:0004120 ! mesoderm-derived structure
 relationship: develops_from UBERON:0010059 {source="EHDAA2"} ! hypoglossal cord
 
 [Term]
@@ -23047,8 +23065,8 @@
 xref: http://www.snomedbrowser.com/Codes/Details/244788005
 xref: MA:0002327
 xref: VHOG:0000748
-is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
 is_a: UBERON:0000378 {is_inferred="true"} ! tongue muscle
+is_a: UBERON:0004120 ! mesoderm-derived structure
 relationship: develops_from UBERON:0010059 {source="EHDAA2"} ! hypoglossal cord
 relationship: part_of UBERON:0001723 ! tongue
 
@@ -23085,7 +23103,6 @@
 xref: MFMO:0000005
 xref: UMLS:C0015460 {source="ncithesaurus:Facial_Muscle"}
 xref: XAO:0001013
-is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
 is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
 is_a: UBERON:0015789 ! cranial or facial muscle
 disjoint_from: UBERON:0003681 ! masticatory muscle
@@ -23580,7 +23597,6 @@
 xref: MESH:D013719
 xref: UMLS:C0039529 {source="ncithesaurus:Tensor_Tympani"}
 xref: VHOG:0000698
-is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
 is_a: UBERON:0004113 ! muscle of auditory ossicle
 is_a: UBERON:0018544 ! trigeminal nerve muscle
 relationship: develops_from UBERON:0010935 ! tensor tympani pre-muscle condensation
@@ -23617,6 +23633,7 @@
 xref: TAO:0000511
 xref: VHOG:0000549
 xref: ZFA:0000511
+is_a: UBERON:0004120 ! mesoderm-derived structure
 is_a: UBERON:0004277 ! eye muscle
 is_a: UBERON:0010313 ! neural crest-derived structure
 is_a: UBERON:0010959 ! craniocervical muscle
@@ -23881,7 +23898,6 @@
 xref: MA:0002049
 xref: Sublingual:artery
 xref: UMLS:C0226106 {source="ncithesaurus:Sublingual_Artery"}
-is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
 is_a: UBERON:0003496 ! head blood vessel
 is_a: UBERON:0004573 ! systemic artery
 is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
@@ -23951,6 +23967,7 @@
 is_a: UBERON:0003496 ! head blood vessel
 is_a: UBERON:0004573 ! systemic artery
 is_a: UBERON:0013648 ! masseteric artery
+relationship: part_of UBERON:0001614 ! superficial temporal artery
 
 [Term]
 id: UBERON:0001616
@@ -23972,7 +23989,6 @@
 xref: MESH:D008438
 xref: OpenCyc:Mx4rwDDJ45wpEbGdrcN5Y29ycA
 xref: UMLS:C0024949 {source="ncithesaurus:Maxillary_Artery"}
-is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
 is_a: UBERON:0001637 ! artery
 is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
 
@@ -23990,10 +24006,10 @@
 xref: http://www.snomedbrowser.com/Codes/Details/147561008
 xref: MA:0002002
 xref: UMLS:C0226144 {source="ncithesaurus:Mental_Artery"}
-is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
 is_a: UBERON:0001637 ! artery
 is_a: UBERON:0003496 ! head blood vessel
 is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
+relationship: part_of UBERON:0014693 ! inferior alveolar artery
 
 [Term]
 id: UBERON:0001618
@@ -24009,9 +24025,9 @@
 xref: http://www.snomedbrowser.com/Codes/Details/148066005
 xref: MA:0001924
 xref: UMLS:C0226151 {source="ncithesaurus:Buccal_Artery"}
-is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
 is_a: UBERON:0001637 ! artery
 is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
+relationship: part_of UBERON:0001616 ! maxillary artery
 
 [Term]
 id: UBERON:0001619
@@ -24035,7 +24051,6 @@
 xref: Ophthalmic:artery
 xref: UMLS:C0029078 {source="ncithesaurus:Opthalmic_Artery"}
 xref: XAO:0000368
-is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
 is_a: UBERON:0003496 ! head blood vessel
 is_a: UBERON:0004573 ! systemic artery
 is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
@@ -24060,7 +24075,6 @@
 xref: MA:0002038
 xref: MESH:D012161
 xref: UMLS:C0035301 {source="ncithesaurus:Retinal_Artery"}
-is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure
 is_a: UBERON:0003496 ! head blood vessel
 is_a: UBERON:0004573 ! systemic artery
 is_a: UBERON:0010313 ! neural crest-derived structure
@@ -24108,7 +24122,6 @@
 xref: Lacrimal:artery
 xref: MA:0001988
 xref: UMLS:C0226171 {source="ncithesaurus:Lacrimal_Artery"}
-is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
 is_a: UBERON:0003496 ! head blood vessel
 is_a: UBERON:0004573 ! systemic artery
 is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
@@ -24150,7 +24163,6 @@
 xref: MESH:D020771
 xref: OpenCyc:Mx4rv8biO5wpEbGdrcN5Y29ycA
 xref: UMLS:C0149561 {source="ncithesaurus:Anterior_Cerebral_Artery"}
-is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
 is_a: UBERON:0003496 ! head blood vessel
 is_a: UBERON:0004449 ! cerebral artery
 is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
@@ -24213,7 +24225,6 @@
 xref: MESH:D020768
 xref: OpenCyc:Mx4rvh3qQ5wpEbGdrcN5Y29ycA
 xref: UMLS:C0149566 {source="ncithesaurus:Middle_Cerebral_Artery"}
-is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
 is_a: UBERON:0003496 ! head blood vessel
 is_a: UBERON:0004449 ! cerebral artery
 is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
@@ -24243,7 +24254,6 @@
 xref: TAO:0005001
 xref: UMLS:C0149559 {source="ncithesaurus:Posterior_Communicating_Artery"}
 xref: ZFA:0005001
-is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
 is_a: UBERON:0003496 ! head blood vessel
 is_a: UBERON:0004573 ! systemic artery
 is_a: UBERON:0006347 ! communicating artery
@@ -24271,7 +24281,7 @@
 xref: MA:0002463
 xref: MESH:A08.800.550.700.120.600.150
 xref: UMLS:C0007277 {source="ncithesaurus:Carotid_Body"}
-is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure
+is_a: UBERON:0004120 ! mesoderm-derived structure
 is_a: UBERON:0034979 ! nonchromaffin paraganglion
 relationship: part_of UBERON:0001530 ! common carotid artery plus branches
 
@@ -24586,6 +24596,7 @@
 xref: Transverse:sinuses
 is_a: UBERON:0003502 ! neck blood vessel
 is_a: UBERON:0017635 ! paired venous dural sinus
+relationship: part_of UBERON:0005475 ! sigmoid sinus
 
 [Term]
 id: UBERON:0001642
@@ -25097,7 +25108,6 @@
 xref: http://www.snomedbrowser.com/Codes/Details/152309009
 xref: MA:0002223
 xref: UMLS:C0226541 {source="ncithesaurus:Submental_Vein"}
-is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
 is_a: UBERON:0003496 ! head blood vessel
 is_a: UBERON:0003502 ! neck blood vessel
 is_a: UBERON:0009141 ! craniocervical region vein
@@ -25163,6 +25173,7 @@
 is_a: UBERON:0003496 ! head blood vessel
 is_a: UBERON:0003502 ! neck blood vessel
 is_a: UBERON:0009141 ! craniocervical region vein
+relationship: part_of UBERON:0001656 ! retromandibular vein
 
 [Term]
 id: UBERON:0001660
@@ -25518,7 +25529,6 @@
 xref: UMLS:C0037884 {source="ncithesaurus:Sphenoid_Bone"}
 is_a: UBERON:0002513 ! endochondral bone
 is_a: UBERON:0003462 ! facial bone
-is_a: UBERON:0004120 ! mesoderm-derived structure
 is_a: UBERON:0008193 {source="FMA"} ! pneumatized bone
 is_a: UBERON:0015060 ! sphenoid endochondral element
 relationship: develops_from UBERON:0009193 {source="cjm"} ! sphenoid cartilage element
@@ -25764,7 +25774,6 @@
 xref: MESH:D006928
 xref: UMLS:C0020417 {source="ncithesaurus:Hyoid_Bone"}
 xref: VHOG:0001325
-is_a: UBERON:0004119 ! endoderm-derived structure
 is_a: UBERON:0008001 {source="FMA"} ! irregular bone
 is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
 relationship: part_of UBERON:0010272 ! hyoid apparatus
@@ -25840,6 +25849,7 @@
 xref: VHOG:0000688
 is_a: UBERON:0001686 ! auditory ossicle bone
 is_a: UBERON:0002513 ! endochondral bone
+is_a: UBERON:0004119 ! endoderm-derived structure
 is_a: UBERON:0015016 ! stapes endochondral element
 disjoint_from: UBERON:0008283 ! columnella
 relationship: develops_from UBERON:0004368 {contradicted_by="doi:10.1111/j.1469-7580.2006.00524.x", source="classical definition"} ! Reichert's cartilage
@@ -26070,7 +26080,6 @@
 xref: MESH:D010579
 xref: UMLS:C1261761 {source="ncithesaurus:Ciliary_Process"}
 xref: VHOG:0001553
-is_a: UBERON:0004120 ! mesoderm-derived structure
 is_a: UBERON:0005913 ! zone of bone organ
 is_a: UBERON:0010313 ! neural crest-derived structure
 relationship: part_of UBERON:0001678 ! temporal bone
@@ -26306,7 +26315,6 @@
 xref: TAO:0001580
 xref: XAO:0003170
 xref: ZFA:0001580
-is_a: UBERON:0004120 ! mesoderm-derived structure
 is_a: UBERON:0011158 {source="FMA"} ! primary subdivision of skull
 relationship: develops_from UBERON:0004761 ! cartilaginous neurocranium
 relationship: part_of UBERON:0003128 ! cranium
@@ -26386,7 +26394,6 @@
 xref: UMLS:C0027432 {source="ncithesaurus:Nasal_Septum"}
 xref: VHOG:0000017
 is_a: UBERON:0003037 ! septum
-is_a: UBERON:0004120 ! mesoderm-derived structure
 is_a: UBERON:0010313 ! neural crest-derived structure
 relationship: develops_from UBERON:0009714 {source="EHDAA2-abduced"} ! intermaxillary process
 relationship: part_of UBERON:0006813 {source="AAO"} ! nasal skeleton
@@ -26469,6 +26476,7 @@
 is_a: UBERON:0010313 ! neural crest-derived structure
 is_a: UBERON:0010912 ! subdivision of skeleton
 relationship: part_of UBERON:0011156 {source="cjm"} ! facial skeleton
+relationship: part_of UBERON:0011595 ! jaw region
 
 [Term]
 id: UBERON:0001709
@@ -26522,7 +26530,6 @@
 xref: ncithesaurus:Lower_Jaw
 xref: VHOG:0000453
 is_a: UBERON:0000475 ! organism subdivision
-is_a: UBERON:0004119 ! endoderm-derived structure
 is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
 relationship: develops_from UBERON:0005867 {source="Mandibular:prominence"} ! mandibular prominence
 
@@ -26719,7 +26726,6 @@
 xref: Secondary:palate
 xref: UMLS:C0700374 {source="ncithesaurus:Palate"}
 xref: UMLS:C1519217 {source="ncithesaurus:Secondary_Palate"}
-is_a: UBERON:0004119 ! endoderm-derived structure
 is_a: UBERON:0007375 ! roof of mouth
 is_a: UBERON:0010313 ! neural crest-derived structure
 relationship: develops_from UBERON:0005619 {notes="fusion", source="http://www.indiana.edu/~anat550/hnanim/face/face.html"} ! secondary palatal shelf
@@ -26970,7 +26976,6 @@
 xref: XAO:0000446
 xref: ZFA:0005333
 is_a: UBERON:0000020 {source="GO"} ! sense organ
-is_a: UBERON:0004119 ! endoderm-derived structure
 is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
 is_a: UBERON:0013765 ! digestive system element
 relationship: develops_from UBERON:0008814 ! pharyngeal arch system
@@ -27030,7 +27035,6 @@
 xref: UMLS:C0226964 {source="ncithesaurus:Papilla_of_the_Tongue"}
 xref: UMLS:C1289183 {source="NIFSTD:birnlex_4102"}
 is_a: UBERON:0000064 ! organ part
-is_a: UBERON:0004119 ! endoderm-derived structure
 relationship: part_of UBERON:0005020 ! mucosa of tongue
 relationship: part_of UBERON:0009471 {source="FMA-modified"} ! dorsum of tongue
 
@@ -27170,6 +27174,7 @@
 is_a: UBERON:0000464 ! anatomical space
 relationship: develops_from UBERON:0001041 {source="XAO"} ! foregut
 relationship: part_of UBERON:0001007 {source="XAO"} ! digestive system
+relationship: part_of UBERON:0006562 ! pharynx
 
 [Term]
 id: UBERON:0001732
@@ -27247,7 +27252,6 @@
 xref: MESH:D014609
 xref: Palatine:uvula
 xref: UMLS:C0042173 {source="ncithesaurus:Uvula"}
-is_a: UBERON:0004119 ! endoderm-derived structure
 is_a: UBERON:0004529 ! anatomical projection
 is_a: UBERON:0010313 ! neural crest-derived structure
 disjoint_from: UBERON:0004078 ! cerebellum vermis lobule IX
@@ -27274,7 +27278,6 @@
 xref: Waldeyer's:ring
 is_a: UBERON:0001961 {source="MA"} ! mucosa-associated lymphoid tissue
 is_a: UBERON:0001962 ! gut-associated lymphoid tissue
-is_a: UBERON:0004119 ! endoderm-derived structure
 relationship: part_of UBERON:0001042 ! chordate pharynx
 
 [Term]
@@ -27307,7 +27310,6 @@
 xref: UMLS:C0038556 {source="ncithesaurus:Submandibular_Gland"}
 xref: VHOG:0000364
 is_a: UBERON:0001829 ! major salivary gland
-is_a: UBERON:0004119 ! endoderm-derived structure
 is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
 relationship: develops_from UBERON:0006298 ! submandibular gland primordium
 
@@ -27394,6 +27396,7 @@
 xref: UMLS:C0023050 {source="ncithesaurus:Laryngeal_Cartilage"}
 xref: VHOG:0001550
 is_a: UBERON:0003406 ! cartilage of respiratory system
+is_a: UBERON:0004119 ! endoderm-derived structure
 is_a: UBERON:0007844 {source="FMA"} ! cartilage element
 is_a: UBERON:0011004 ! pharyngeal arch cartilage
 intersection_of: UBERON:0007844 ! cartilage element
@@ -28251,6 +28254,7 @@
 is_a: UBERON:0010313 ! neural crest-derived structure
 is_a: UBERON:0015808 ! eye epithelium
 relationship: develops_from UBERON:0000076 {source="ISBN:0781772214"} ! external ectoderm
+relationship: part_of UBERON:0000964 ! cornea
 
 [Term]
 id: UBERON:0001773
@@ -28564,7 +28568,6 @@
 is_a: UBERON:0015808 ! eye epithelium
 intersection_of: UBERON:0001781 ! layer of retina
 intersection_of: immediate_transformation_of UBERON:0005424 ! presumptive retinal pigmented epithelium
-relationship: immediate_transformation_of UBERON:0005424 ! presumptive retinal pigmented epithelium
 
 [Term]
 id: UBERON:0001783
@@ -29197,6 +29200,7 @@
 is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
 relationship: develops_from UBERON:0001803 {source="Wikipedia"} ! epithelium of lens
 relationship: develops_from UBERON:0005614 {source="EHDAA2"} ! lens anterior epithelium
+relationship: part_of UBERON:0000965 ! lens of camera-type eye
 
 [Term]
 id: UBERON:0001805
@@ -29877,7 +29881,6 @@
 xref: VHOG:0000308
 is_a: UBERON:0000409 ! serous gland
 is_a: UBERON:0001829 ! major salivary gland
-is_a: UBERON:0004119 ! endoderm-derived structure
 is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
 is_a: UBERON:0012102 ! buccal salivary gland
 disjoint_from: UBERON:0013219 ! parotoid gland
@@ -29964,7 +29967,6 @@
 xref: VHOG:0001750
 xref: ZFA:0005226
 is_a: UBERON:0001833 ! lip
-is_a: UBERON:0004119 ! endoderm-derived structure
 is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
 intersection_of: UBERON:0001833 ! lip
 intersection_of: part_of UBERON:0001709 ! upper jaw region
@@ -29994,7 +29996,6 @@
 xref: UMLS:C0458583 {source="ncithesaurus:Lower_Lip"}
 xref: ZFA:0005225
 is_a: UBERON:0001833 ! lip
-is_a: UBERON:0004119 ! endoderm-derived structure
 is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
 intersection_of: UBERON:0001833 ! lip
 intersection_of: part_of UBERON:0001710 ! lower jaw region
@@ -30091,7 +30092,6 @@
 xref: UMLS:C0458699 {source="ncithesaurus:Osseous_Labyrinth"}
 xref: VHOG:0001219
 xref: XAO:0000193
-is_a: UBERON:0004120 ! mesoderm-derived structure
 is_a: UBERON:0010313 ! neural crest-derived structure
 is_a: UBERON:0034921 ! multi organ part structure
 relationship: part_of UBERON:0001694 {source="FMA", source="MA"} ! petrous part of temporal bone
@@ -30248,7 +30248,6 @@
 xref: VHOG:0000691
 xref: XAO:0000197
 xref: ZFA:0000374
-is_a: UBERON:0004120 ! mesoderm-derived structure
 is_a: UBERON:0010313 ! neural crest-derived structure
 is_a: UBERON:0034921 ! multi organ part structure
 relationship: part_of UBERON:0001839 {source="FMA", source="ncit", source="VHOG", source="XAO"} ! bony labyrinth
@@ -30703,7 +30702,6 @@
 xref: http://www.snomedbrowser.com/Codes/Details/362578000
 xref: MA:0001206
 xref: Scala:vestibuli
-is_a: UBERON:0004120 ! mesoderm-derived structure
 is_a: UBERON:0010313 ! neural crest-derived structure
 is_a: UBERON:0011060 {source="MA"} ! perilymphatic channel
 is_a: UBERON:0013685 ! foramen of skull
@@ -30722,7 +30720,6 @@
 xref: MA:0001205
 xref: MESH:D012533
 xref: Scala:tympani
-is_a: UBERON:0004120 ! mesoderm-derived structure
 is_a: UBERON:0010313 ! neural crest-derived structure
 is_a: UBERON:0011060 {source="MA"} ! perilymphatic channel
 is_a: UBERON:0013685 ! foramen of skull
@@ -34876,7 +34873,6 @@
 xref: Papillary:dermis
 xref: UMLS:C0221930 {source="ncithesaurus:Stratum_Papillare"}
 xref: UMLS:C0682598 {source="ncithesaurus:Papillary_Dermis"}
-is_a: UBERON:0004120 ! mesoderm-derived structure
 is_a: UBERON:0004121 ! ectoderm-derived structure
 is_a: UBERON:0013754 ! integumentary system layer
 relationship: part_of UBERON:0002067 ! dermis
@@ -34904,7 +34900,6 @@
 xref: Reticular:dermis
 xref: UMLS:C0682599 {source="ncithesaurus:Reticular_Dermis"}
 xref: UMLS:C1514988 {source="ncithesaurus:Stratum_Reticulare"}
-is_a: UBERON:0004120 ! mesoderm-derived structure
 is_a: UBERON:0004121 ! ectoderm-derived structure
 is_a: UBERON:0013754 ! integumentary system layer
 relationship: part_of UBERON:0002067 ! dermis
@@ -35107,7 +35102,6 @@
 xref: MA:0001508
 xref: UMLS:C1261194 {source="ncithesaurus:Joint_of_the_Rib"}
 is_a: UBERON:0000982 ! skeletal joint
-is_a: UBERON:0004120 ! mesoderm-derived structure
 relationship: part_of UBERON:0014478 {source="cjm"} ! rib skeletal system
 
 [Term]
@@ -35326,7 +35320,6 @@
 xref: UMLS:C0034052 {source="ncithesaurus:Pulmonary_Artery"}
 xref: VHOG:0000982
 xref: XAO:0004162
-is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
 is_a: UBERON:0001637 ! artery
 is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
 is_a: UBERON:0013768 ! great vessel of heart
@@ -35398,6 +35391,7 @@
 xref: UMLS:C0227637 {source="ncithesaurus:Renal_Capsule"}
 is_a: UBERON:0003567 ! abdomen connective tissue
 is_a: UBERON:0011824 ! fibrous connective tissue
+relationship: part_of UBERON:0002113 ! kidney
 
 [Term]
 id: UBERON:0002016
@@ -35425,7 +35419,6 @@
 xref: UMLS:C0034090 {source="ncithesaurus:Pulmonary_Vein"}
 xref: VHOG:0001133
 xref: XAO:0000394
-is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
 is_a: UBERON:0001638 ! vein
 is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
 is_a: UBERON:0013768 ! great vessel of heart
@@ -35726,14 +35719,15 @@
 synonym: "epidermis sensorial layer" RELATED [XAO:0000041]
 synonym: "epidermis stratum basale" EXACT []
 synonym: "epidermis stratum germinativum" RELATED []
-synonym: "Malpighian layer" RELATED [BTO:0000438]
-synonym: "rete Malphighii" EXACT []
+synonym: "Malpighian layer" BROAD [http://en.wikipedia.org/wiki/Malpighian_layer]
+synonym: "rete Malphighii" BROAD MISSPELLING []
+synonym: "rete Malpighii" BROAD []
 synonym: "stratum basale" BROAD []
 synonym: "stratum basalis of epidermis" EXACT []
 synonym: "stratum germinativum" EXACT []
 synonym: "stratum germinosum" BROAD []
 synonym: "stratum germinosum of epidermis" EXACT []
-synonym: "stratum Malphighi" EXACT []
+synonym: "stratum Malpighi" BROAD LATIN [http://en.wikipedia.org/wiki/Malpighian_layer]
 xref: :C33466
 xref: :C33623
 xref: AAO:0010598
@@ -35760,10 +35754,11 @@
 subset: pheno_slim
 synonym: "epidermis prickle cell layer" RELATED []
 synonym: "epidermis stratum spinosum" EXACT []
+synonym: "Malpighian layer" BROAD [http://en.wikipedia.org/wiki/Malpighian_layer]
 synonym: "prickle cell layer" RELATED [BTO:0000435]
 synonym: "prickle cell layer of epidermis" EXACT [FMA:67542]
 synonym: "squamous cell layer of epidermis" EXACT []
-synonym: "stratum Malphighii" EXACT []
+synonym: "stratum Malpighii" BROAD LATIN [http://en.wikipedia.org/wiki/Malpighian]
 synonym: "stratum spinosum" EXACT []
 xref: :C12850
 xref: BTO:0000435
@@ -36571,6 +36566,7 @@
 is_a: UBERON:0003893 ! capsule
 is_a: UBERON:0004120 ! mesoderm-derived structure
 is_a: UBERON:0010313 ! neural crest-derived structure
+relationship: part_of UBERON:0002369 ! adrenal gland
 
 [Term]
 id: UBERON:0002053
@@ -36646,6 +36642,7 @@
 xref: UMLS:C0226334 {source="ncithesaurus:Inferior_Suprarenal_Artery"}
 is_a: UBERON:0004573 ! systemic artery
 is_a: UBERON:0005624 ! suprarenal artery
+relationship: part_of UBERON:0001184 ! renal artery
 
 [Term]
 id: UBERON:0002057
@@ -36750,7 +36747,6 @@
 xref: MESH:D014338
 xref: OpenCyc:Mx4rquH9YKgNEdudWQACs5b6Bw
 xref: UMLS:C1519589 {source="ncithesaurus:Trancus_Arteriosus"}
-is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
 is_a: UBERON:0001637 {source="EHDAA2"} ! artery
 is_a: UBERON:0002050 {source="FMA"} ! embryonic structure
 is_a: UBERON:0003498 ! heart blood vessel
@@ -36949,7 +36945,6 @@
 xref: VHOG:0000108
 xref: XAO:0000217
 xref: ZFA:0001119
-is_a: UBERON:0004120 ! mesoderm-derived structure
 is_a: UBERON:0004121 ! ectoderm-derived structure
 is_a: UBERON:0004923 {source="FMA"} ! organ component layer
 is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
@@ -37107,9 +37102,8 @@
 xref: OpenCyc:Mx4rvVjOI5wpEbGdrcN5Y29ycA
 xref: UMLS:C0221971 {source="ncithesaurus:Hair_Follicle"}
 xref: VHOG:0001268
-is_a: UBERON:0000063 ! organ subunit
-is_a: UBERON:0004121 ! ectoderm-derived structure
 is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
+is_a: UBERON:0036150 ! skin appendage follicle
 relationship: develops_from UBERON:0005086 ! hair follicle placode
 relationship: part_of UBERON:0001003 {source="FMA"} ! skin epidermis
 relationship: part_of UBERON:0011932 {source="http://dx.doi.org/10.1016/j.cub.2008.12.005"} ! pilosebaceous unit
@@ -37176,6 +37170,7 @@
 is_a: UBERON:0000119 ! cell layer
 is_a: UBERON:0004121 ! ectoderm-derived structure
 is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
+relationship: part_of UBERON:0002074 ! hair shaft
 
 [Term]
 id: UBERON:0002077
@@ -37534,7 +37529,6 @@
 xref: VSAO:0000093
 xref: XAO:0003073
 xref: ZFA:0000317
-is_a: UBERON:0004120 ! mesoderm-derived structure
 is_a: UBERON:0010912 ! subdivision of skeleton
 relationship: part_of UBERON:0005944 ! axial skeleton plus cranial skeleton
 relationship: part_of UBERON:0011138 ! postcranial axial skeletal system
@@ -38460,6 +38454,7 @@
 xref: UMLS:C0229945 {source="ncithesaurus:Thymic_Capsule"}
 is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
 is_a: UBERON:0003893 ! capsule
+relationship: part_of UBERON:0002370 ! thymus
 
 [Term]
 id: UBERON:0002123
@@ -40480,6 +40475,7 @@
 xref: MA:0000739
 xref: UMLS:C0229699 {source="ncithesaurus:Lymph_Node_Capsule"}
 is_a: UBERON:0003893 ! capsule
+relationship: part_of UBERON:0000029 ! lymph node
 
 [Term]
 id: UBERON:0002195
@@ -40836,7 +40832,6 @@
 xref: MESH:D008371
 xref: OpenCyc:Mx4rvXOLAZwpEbGdrcN5Y29ycA
 xref: UMLS:C1710195 {source="ncithesaurus:Sternal_Manubrium"}
-is_a: UBERON:0004120 ! mesoderm-derived structure
 is_a: UBERON:0005181 ! thoracic segment organ
 is_a: UBERON:0010363 {source="ISBN10:0073040584"} ! endochondral element
 disjoint_from: UBERON:0006722 ! manubrium of malleus
@@ -40913,7 +40908,6 @@
 xref: MA:0001334
 xref: UMLS:C0043356 {source="ncithesaurus:Xiphoid_Process"}
 xref: Xiphoid:process
-is_a: UBERON:0004120 ! mesoderm-derived structure
 is_a: UBERON:4100000 ! skeletal element projection
 relationship: part_of UBERON:0000975 ! sternum
 
@@ -40932,7 +40926,6 @@
 xref: MA:0001333
 is_a: UBERON:0002513 ! endochondral bone
 is_a: UBERON:0003827 ! thoracic segment bone
-is_a: UBERON:0004120 ! mesoderm-derived structure
 relationship: develops_from UBERON:0006295 ! sternebral bone pre-cartilage condensation
 relationship: part_of UBERON:0000975 {source="MA"} ! sternum
 
@@ -41192,7 +41185,6 @@
 xref: TAO:0001738
 xref: UMLS:C0224548 {source="ncithesaurus:Fontanelle"}
 xref: ZFA:0005536
-is_a: UBERON:0004120 ! mesoderm-derived structure
 is_a: UBERON:0007651 {source="FMA"} ! anatomical junction
 relationship: part_of UBERON:0001703 {source="MA", source="ZFA"} ! neurocranium
 
@@ -41271,6 +41263,7 @@
 xref: Thoracic:cavity
 xref: UMLS:C0230139 {source="ncithesaurus:Thoracic_Cavity"}
 is_a: UBERON:0000464 ! anatomical space
+relationship: part_of UBERON:0000915 ! thoracic segment of trunk
 relationship: part_of UBERON:0002323 ! coelemic cavity lumen
 
 [Term]
@@ -41434,7 +41427,6 @@
 xref: http://www.snomedbrowser.com/Codes/Details/263358001
 xref: MA:0001415
 xref: UMLS:C0222806 {source="ncithesaurus:Rib_Head"}
-is_a: UBERON:0004120 ! mesoderm-derived structure
 is_a: UBERON:0005055 ! zone of long bone
 is_a: UBERON:0005913 {source="FMA"} ! zone of bone organ
 relationship: part_of UBERON:0010388 {source="http://www.ncbi.nlm.nih.gov/pubmed/15906248"} ! proximal segment of rib
@@ -41453,7 +41445,6 @@
 xref: http://www.snomedbrowser.com/Codes/Details/263361000
 xref: MA:0001416
 xref: UMLS:C0448161 {source="ncithesaurus:Rib_Shaft"}
-is_a: UBERON:0004120 ! mesoderm-derived structure
 is_a: UBERON:0005055 ! zone of long bone
 relationship: part_of UBERON:0010388 {source="http://www.ncbi.nlm.nih.gov/pubmed/15906248"} ! proximal segment of rib
 
@@ -41543,7 +41534,6 @@
 xref: MA:0001417
 xref: Tubercle:(rib)
 xref: UMLS:C0222809 {source="ncithesaurus:Rib_Tubercle"}
-is_a: UBERON:0004120 ! mesoderm-derived structure
 is_a: UBERON:0005813 ! tubercle
 is_a: UBERON:4100000 ! skeletal element projection
 intersection_of: UBERON:0005813 ! tubercle
@@ -41571,7 +41561,6 @@
 xref: MA:0000106
 xref: OpenCyc:Mx4rwP1g3pwpEbGdrcN5Y29ycA
 xref: UMLS:C0222787 {source="ncithesaurus:Costal_Cartilage"}
-is_a: UBERON:0004120 ! mesoderm-derived structure
 is_a: UBERON:0007844 ! cartilage element
 relationship: part_of UBERON:0002228 ! rib
 
@@ -41760,7 +41749,6 @@
 xref: TAO:0000567
 xref: VHOG:0000426
 xref: ZFA:0000567
-is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure
 is_a: UBERON:0002514 ! intramembranous bone
 is_a: UBERON:0008907 ! dermal bone
 is_a: UBERON:0011597 ! bone of upper jaw
@@ -42436,7 +42424,6 @@
 xref: VHOG:0001478
 xref: XAO:0004155
 xref: ZFA:0005045
-is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure
 is_a: UBERON:0001637 {source="ZFA"} ! artery
 is_a: UBERON:0003499 ! brain blood vessel
 is_a: UBERON:0005492 ! hyaloid vessel
@@ -42590,7 +42577,6 @@
 xref: MA:0001186
 xref: MESH:D014723
 xref: Vestibular:aqueduct
-is_a: UBERON:0004120 ! mesoderm-derived structure
 is_a: UBERON:0010313 ! neural crest-derived structure
 is_a: UBERON:0013685 ! foramen of skull
 relationship: part_of UBERON:0005236 ! osseus labyrinth vestibule
@@ -43091,7 +43077,6 @@
 xref: FMA:79789
 xref: MA:0002458
 xref: Scala:media
-is_a: UBERON:0004120 ! mesoderm-derived structure
 is_a: UBERON:0010313 ! neural crest-derived structure
 is_a: UBERON:0011060 {source="MA"} ! perilymphatic channel
 is_a: UBERON:0013685 ! foramen of skull
@@ -43894,7 +43879,6 @@
 xref: ZFA:0000155
 is_a: UBERON:0005423 ! developing anatomical structure
 is_a: UBERON:0007503 {source="EHDAA2"} ! epithelial vesicle
-is_a: UBERON:0012275 ! meso-epithelium
 relationship: develops_from UBERON:0003059 {source="ZFA"} ! presomitic mesoderm
 
 [Term]
@@ -44001,7 +43985,6 @@
 xref: Submandibular:duct
 xref: UMLS:C0227472 {source="ncithesaurus:Submandibular_Duct"}
 is_a: UBERON:0001837 ! duct of salivary gland
-is_a: UBERON:0004119 ! endoderm-derived structure
 is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
 intersection_of: UBERON:0001837 ! duct of salivary gland
 intersection_of: part_of UBERON:0001736 ! submandibular gland
@@ -44825,7 +44808,6 @@
 xref: OpenCyc:Mx4rvvmzqZwpEbGdrcN5Y29ycA
 xref: UMLS:C0013313 {source="ncithesaurus:Dura_Mater"}
 is_a: UBERON:0002360 ! meninx
-is_a: UBERON:0004120 ! mesoderm-derived structure
 relationship: immediate_transformation_of UBERON:0007647 {evidence="definitional"} ! ectomeninx
 
 [Term]
@@ -44857,7 +44839,6 @@
 xref: VHOG:0001146
 xref: XAO:0000212
 is_a: UBERON:0000094 {source="FMA"} ! membrane organ
-is_a: UBERON:0004119 ! endoderm-derived structure
 is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
 relationship: develops_from UBERON:0009213 {source="Wikipedia"} ! pharyngeal membrane of 1st arch
 relationship: part_of UBERON:0001756 {source="MA"} ! middle ear
@@ -45146,7 +45127,6 @@
 xref: VHOG:0001139
 is_a: UBERON:0001961 {source="FMA"} ! mucosa-associated lymphoid tissue
 is_a: UBERON:0001962 ! gut-associated lymphoid tissue
-is_a: UBERON:0004119 ! endoderm-derived structure
 disjoint_from: UBERON:0005351 ! paraflocculus
 relationship: part_of UBERON:0001735 {source="cjm"} ! tonsillar ring
 
@@ -45175,6 +45155,7 @@
 xref: UMLS:C0040421 {source="ncithesaurus:Palatine_Tonsil"}
 xref: VHOG:0001140
 is_a: UBERON:0002372 ! tonsil
+is_a: UBERON:0004119 ! endoderm-derived structure
 is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
 relationship: develops_from UBERON:0010023 {notes="the dorsal elongation of the second pouch endoderm of all mammals, with the exception of rodents, gives rise to the epithelial lining of palatine tonsils; in rodents, the ventral portion of the second pouch appears to degenerate whereas the remaining part is incorporated into the lateral border of the pharynx; it appears that rodents no longer require tonsils as their function is carried out by the NALT (Nose/Nasal-Associated Lymphoid Tissue) system in the upper respiratory tract", source="http://www.ncbi.nlm.nih.gov/pubmed/20144910", source="ISBN10:1607950324", source="MP:anna"} ! dorsal part of pharyngeal pouch 2
 relationship: dubious_for_taxon NCBITaxon:9989 {source="http://www.ncbi.nlm.nih.gov/pubmed/20144910"}
@@ -45269,6 +45250,7 @@
 xref: http://www.snomedbrowser.com/Codes/Details/244718003
 xref: MA:0000578
 xref: ZFA:0001652
+is_a: UBERON:0004120 ! mesoderm-derived structure
 is_a: UBERON:0010959 ! craniocervical muscle
 relationship: develops_from UBERON:0006904 {source="EHDAA2-abduced"} ! head mesenchyme from mesoderm
 relationship: part_of UBERON:0004461 {source="https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships"} ! musculature of head
@@ -45366,6 +45348,7 @@
 xref: UMLS:C0224361 {source="ncithesaurus:Trapezius_Muscle"}
 xref: VHOG:0000834
 is_a: UBERON:0001482 ! muscle of shoulder
+is_a: UBERON:0004120 ! mesoderm-derived structure
 is_a: UBERON:0010313 ! neural crest-derived structure
 relationship: develops_from UBERON:0010955 ! trapezius pre-muscle mass
 
@@ -45421,6 +45404,7 @@
 xref: XAO:0004128
 is_a: UBERON:0002461 ! anterior abdominal wall muscle
 is_a: UBERON:0003897 ! axial muscle
+is_a: UBERON:0004120 ! mesoderm-derived structure
 relationship: part_of UBERON:0006635 {source="VHOG"} ! anterior abdominal wall
 relationship: part_of UBERON:0008777 {source="XAO"} ! hypaxial musculature
 
@@ -45755,7 +45739,6 @@
 xref: UMLS:C0027437 {source="ncithesaurus:Nasolacrimal_Duct"}
 xref: VHOG:0000664
 is_a: UBERON:0000058 ! duct
-is_a: UBERON:0004119 ! endoderm-derived structure
 is_a: UBERON:0004121 ! ectoderm-derived structure
 is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
 relationship: develops_from UBERON:0006266 ! nasolacrimal groove
@@ -45911,7 +45894,6 @@
 xref: VHOG:0001021
 xref: VSAO:0000207
 xref: ZFA:0000270
-is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure
 is_a: UBERON:000251...
 
[truncated message content]

[Obo-svn-commit] SF.net SVN: obo:[5381] uberon/releases/2016-09-07/

[<cmu...@us...>]

Revision: 5381
          http://sourceforge.net/p/obo/svn/5381
Author:   cmungall
Date:     2016-09-08 14:42:39 +0000 (Thu, 08 Sep 2016)
Log Message:
-----------
new-release

Added Paths:
-----------
    uberon/releases/2016-09-07/

This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.

[Obo-svn-commit] SF.net SVN: obo:[5379] uberon/releases/2016-08-12/

[<cmu...@us...>]

Revision: 5379
          http://sourceforge.net/p/obo/svn/5379
Author:   cmungall
Date:     2016-08-14 21:47:28 +0000 (Sun, 14 Aug 2016)
Log Message:
-----------
new-release

Added Paths:
-----------
    uberon/releases/2016-08-12/

This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.

[Obo-svn-commit] SF.net SVN: obo:[5378] uberon/trunk

[<cmu...@us...>]

Revision: 5378
          http://sourceforge.net/p/obo/svn/5378
Author:   cmungall
Date:     2016-08-12 22:29:04 +0000 (Fri, 12 Aug 2016)
Log Message:
-----------
new release

Modified Paths:
--------------
    uberon/trunk/basic.obo
    uberon/trunk/basic.owl
    uberon/trunk/bridge/uberon-bridge-to-aao.obo
    uberon/trunk/bridge/uberon-bridge-to-aao.owl
    uberon/trunk/bridge/uberon-bridge-to-aeo.obo
    uberon/trunk/bridge/uberon-bridge-to-aeo.owl
    uberon/trunk/bridge/uberon-bridge-to-bila.obo
    uberon/trunk/bridge/uberon-bridge-to-bila.owl
    uberon/trunk/bridge/uberon-bridge-to-caro.obo
    uberon/trunk/bridge/uberon-bridge-to-caro.owl
    uberon/trunk/bridge/uberon-bridge-to-dhba.obo
    uberon/trunk/bridge/uberon-bridge-to-dhba.owl
    uberon/trunk/bridge/uberon-bridge-to-dmba.obo
    uberon/trunk/bridge/uberon-bridge-to-dmba.owl
    uberon/trunk/bridge/uberon-bridge-to-efo.obo
    uberon/trunk/bridge/uberon-bridge-to-efo.owl
    uberon/trunk/bridge/uberon-bridge-to-ehdaa.obo
    uberon/trunk/bridge/uberon-bridge-to-ehdaa.owl
    uberon/trunk/bridge/uberon-bridge-to-ehdaa2.obo
    uberon/trunk/bridge/uberon-bridge-to-ehdaa2.owl
    uberon/trunk/bridge/uberon-bridge-to-emapa.obo
    uberon/trunk/bridge/uberon-bridge-to-emapa.owl
    uberon/trunk/bridge/uberon-bridge-to-fbbt.obo
    uberon/trunk/bridge/uberon-bridge-to-fbbt.owl
    uberon/trunk/bridge/uberon-bridge-to-fbdv.obo
    uberon/trunk/bridge/uberon-bridge-to-fbdv.owl
    uberon/trunk/bridge/uberon-bridge-to-fma.obo
    uberon/trunk/bridge/uberon-bridge-to-fma.owl
    uberon/trunk/bridge/uberon-bridge-to-go.obo
    uberon/trunk/bridge/uberon-bridge-to-go.owl
    uberon/trunk/bridge/uberon-bridge-to-hao.obo
    uberon/trunk/bridge/uberon-bridge-to-hao.owl
    uberon/trunk/bridge/uberon-bridge-to-hba.obo
    uberon/trunk/bridge/uberon-bridge-to-hba.owl
    uberon/trunk/bridge/uberon-bridge-to-ma.obo
    uberon/trunk/bridge/uberon-bridge-to-ma.owl
    uberon/trunk/bridge/uberon-bridge-to-mba.obo
    uberon/trunk/bridge/uberon-bridge-to-mba.owl
    uberon/trunk/bridge/uberon-bridge-to-mfo.obo
    uberon/trunk/bridge/uberon-bridge-to-mfo.owl
    uberon/trunk/bridge/uberon-bridge-to-og.obo
    uberon/trunk/bridge/uberon-bridge-to-og.owl
    uberon/trunk/bridge/uberon-bridge-to-pba.obo
    uberon/trunk/bridge/uberon-bridge-to-pba.owl
    uberon/trunk/bridge/uberon-bridge-to-sctid.obo
    uberon/trunk/bridge/uberon-bridge-to-sctid.owl
    uberon/trunk/bridge/uberon-bridge-to-spd.obo
    uberon/trunk/bridge/uberon-bridge-to-spd.owl
    uberon/trunk/bridge/uberon-bridge-to-tads.obo
    uberon/trunk/bridge/uberon-bridge-to-tads.owl
    uberon/trunk/bridge/uberon-bridge-to-tao.obo
    uberon/trunk/bridge/uberon-bridge-to-tao.owl
    uberon/trunk/bridge/uberon-bridge-to-tgma.obo
    uberon/trunk/bridge/uberon-bridge-to-tgma.owl
    uberon/trunk/bridge/uberon-bridge-to-vsao.obo
    uberon/trunk/bridge/uberon-bridge-to-vsao.owl
    uberon/trunk/bridge/uberon-bridge-to-wbbt.obo
    uberon/trunk/bridge/uberon-bridge-to-wbbt.owl
    uberon/trunk/bridge/uberon-bridge-to-wbls.obo
    uberon/trunk/bridge/uberon-bridge-to-wbls.owl
    uberon/trunk/bridge/uberon-bridge-to-xao.obo
    uberon/trunk/bridge/uberon-bridge-to-xao.owl
    uberon/trunk/bridge/uberon-bridge-to-zfa.obo
    uberon/trunk/bridge/uberon-bridge-to-zfa.owl
    uberon/trunk/bridge/uberon-bridge-to-zfs.obo
    uberon/trunk/bridge/uberon-bridge-to-zfs.owl
    uberon/trunk/chebi_import.owl
    uberon/trunk/cl_import.owl
    uberon/trunk/composite-metazoan-basic.obo
    uberon/trunk/composite-metazoan.obo
    uberon/trunk/composite-metazoan.owl
    uberon/trunk/composite-vertebrate.obo
    uberon/trunk/composite-vertebrate.owl
    uberon/trunk/core.obo
    uberon/trunk/core.owl
    uberon/trunk/diffs/uberon-diff.md
    uberon/trunk/ext.obo
    uberon/trunk/ext.owl
    uberon/trunk/go_import.owl
    uberon/trunk/homology.owl
    uberon/trunk/merged.obo
    uberon/trunk/merged.owl
    uberon/trunk/ncbitaxon_import.owl
    uberon/trunk/pato_import.owl
    uberon/trunk/pr_import.owl
    uberon/trunk/reports/stages-human-report.tsv
    uberon/trunk/reports/stages-metazoan-report.tsv
    uberon/trunk/reports/stages-mouse-report.tsv
    uberon/trunk/reports/stages-xenopus-report.tsv
    uberon/trunk/subsets/amniote-basic.obo
    uberon/trunk/subsets/amniote-basic.owl
    uberon/trunk/subsets/appendicular-minimal.obo
    uberon/trunk/subsets/cumbo.obo
    uberon/trunk/subsets/digestive-minimal.obo
    uberon/trunk/subsets/efo-slim.obo
    uberon/trunk/subsets/efo-slim.owl
    uberon/trunk/subsets/euarchontoglires-basic.obo
    uberon/trunk/subsets/euarchontoglires-basic.owl
    uberon/trunk/subsets/life-stages-composite.obo
    uberon/trunk/subsets/mouse-view.owl
    uberon/trunk/subsets/musculoskeletal-minimal.obo
    uberon/trunk/subsets/nervous-minimal.obo
    uberon/trunk/subsets/uberon-with-isa-for-FMA-MA-ZFA.obo
    uberon/trunk/uberon.obo
    uberon/trunk/uberon.owl

Modified: uberon/trunk/basic.obo
===================================================================
--- uberon/trunk/basic.obo	2016-07-30 00:03:28 UTC (rev 5377)
+++ uberon/trunk/basic.obo	2016-08-12 22:29:04 UTC (rev 5378)
@@ -1,6 +1,6 @@
 format-version: 1.2
-data-version: uberon/releases/2016-07-14/basic.owl
-date: 14:07:2016 20:35
+data-version: uberon/releases/2016-08-12/basic.owl
+date: 12:08:2016 08:17
 saved-by: cjm
 subsetdef: cumbo "CUMBO"
 subsetdef: cyclostome_subset "cyclostome structures"
@@ -43,7 +43,7 @@
 default-namespace: uberon
 remark: Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/TEMP>) VersionIRI(<null>))) [Axioms: 437 Logical Axioms: 0]
 remark: Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/uberon-bridge-to-bfo.owl>) VersionIRI(<null>))) [Axioms: 20 Logical Axioms: 9]
-remark: Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/uberon/ext.owl>) VersionIRI(<null>))) [Axioms: 25779 Logical Axioms: 4719]
+remark: Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/uberon/ext.owl>) VersionIRI(<null>))) [Axioms: 25782 Logical Axioms: 4722]
 treat-xrefs-as-equivalent: AEO
 treat-xrefs-as-equivalent: BILA
 treat-xrefs-as-equivalent: BSPO
@@ -59805,8 +59805,8 @@
 name: anterior spinocerebellar tract
 def: "Runs through the ventrolateral surface of the spinal cord. It enters the cerebellum through the superior cerebellar peduncle. It crosses the midline at the segmental level and recrosses in the cerebellum. Its terminals are distributed in the cerebellar anterior lobe, preferentially in the ipsilateral intermediate cortex. Rostrally, it extends to lobule II." [NIFSTD:birnlex_848]
 subset: uberon_slim
-synonym: "gower's tract" EXACT [NIFSTD:birnlex_848]
-synonym: "gowers' tract" EXACT [FMA:72642]
+synonym: "Gower's tract" EXACT [NIFSTD:birnlex_848]
+synonym: "Gowers' tract" EXACT [FMA:72642]
 synonym: "tractus spinocerebellaris anterior" RELATED LATIN [NeuroNames:808]
 synonym: "tractus spinocerebellaris ventralis" RELATED LATIN [NeuroNames:808]
 synonym: "ventral spinocerebellar tract" EXACT [FMA:72642]
@@ -59825,7 +59825,7 @@
 xref: MBA:866
 xref: UMLS:C0175561 {source="NIFSTD:birnlex_848"}
 is_a: UBERON:0007702 ! tract of brain
-relationship: part_of UBERON:0001896 ! medulla oblongata
+relationship: part_of UBERON:0001896 {source="FMA"} ! medulla oblongata
 relationship: part_of UBERON:0005413 ! spinocerebellar tract
 
 [Term]
@@ -93156,7 +93156,7 @@
 is_a: UBERON:0004120 ! mesoderm-derived structure
 intersection_of: UBERON:0001285 ! nephron
 intersection_of: part_of UBERON:0000081 ! metanephros
-relationship: develops_from UBERON:0003220 {source="Wikipedia"} ! metanephric mesenchyme
+relationship: develops_from UBERON:0003220 {source="http://en.wikipedia.org/wiki/Nephron"} ! metanephric mesenchyme
 relationship: immediate_transformation_of UBERON:0010535 {source="Bgee:AN"} ! primitive metanephric nephron
 relationship: part_of UBERON:0000081 ! metanephros
 
@@ -105009,7 +105009,6 @@
 synonym: "Brodmann area 35" EXACT [NIFSTD:birnlex_1768]
 synonym: "Brodmann area 35, perirhinal" EXACT [NIFSTD:birnlex_1768]
 synonym: "Brodmann's area 35" EXACT [FMA:68632]
-synonym: "Brodmann.35" EXACT [NIFSTD:birnlex_1768]
 synonym: "perirhinal area 35" EXACT [FMA:68632]
 xref: birnlex:1768
 xref: Brodmann_area:35
@@ -105033,7 +105032,6 @@
 synonym: "BA36" EXACT ABBREVIATION []
 synonym: "Brodmann (1909) area 36" EXACT [NIFSTD:birnlex_1769]
 synonym: "Brodmann area 36" EXACT [NIFSTD:birnlex_1769]
-synonym: "Brodmann.36" EXACT [NIFSTD:birnlex_1769]
 synonym: "ectorhinal" EXACT [NIFSTD:birnlex_1769]
 synonym: "ectorhinal area 36" EXACT [FMA:68633]
 xref: birnlex:1769
@@ -151227,7 +151225,6 @@
 synonym: "Brodmann (1909) area 10" EXACT [NIFSTD:birnlex_1741]
 synonym: "Brodmann area 10" EXACT [FMA:68607]
 synonym: "Brodmann area 10, frontoplar" EXACT [NIFSTD:birnlex_1741]
-synonym: "Brodmann.10" EXACT [NIFSTD:birnlex_1741]
 synonym: "lateral orbital area" EXACT [FMA:68607]
 synonym: "rostral sulcus" RELATED [NeuroNames:76]
 synonym: "sulcus rectus" RELATED LATIN [NeuroNames:76]
@@ -179735,7 +179732,7 @@
 xref: http://en.wikipedia.org/wiki/Small_cardiac_vein
 xref: http://linkedlifedata.com/resource/umls/id/C0226661
 xref: http://www.snomedbrowser.com/Codes/Details/277730007
-is_a: UBERON:0004148 {source="FMA"} ! cardiac vein
+is_a: UBERON:0004148 {source="ncithesaurus"} ! cardiac vein
 
 [Term]
 id: UBERON:0035377
@@ -183127,6 +183124,32 @@
 is_a: UBERON:0003831 ! respiratory system muscle
 
 [Term]
+id: UBERON:0036072
+name: respiratory primordium epithelium
+xref: EHDAA2:0004070
+is_a: UBERON:0004185 ! endodermal part of digestive tract
+is_a: UBERON:0005911 ! endo-epithelium
+is_a: UBERON:0007499 ! epithelial sac
+is_a: UBERON:0009854 ! digestive tract diverticulum
+is_a: UBERON:0015833 ! foregut epithelium
+intersection_of: UBERON:0007499 ! epithelial sac
+intersection_of: part_of UBERON:0008947 ! respiratory primordium
+relationship: develops_from UBERON:0007690 {source="EHDAA2"} ! early pharyngeal endoderm
+relationship: part_of UBERON:0008947 ! respiratory primordium
+
+[Term]
+id: UBERON:0036073
+name: respiratory primordium mesenchyme
+synonym: "respiratory primordium associated mesenchyme" EXACT [EHDAA2:0004071]
+xref: EHDAA2:0004071
+is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
+is_a: UBERON:0003104 ! mesenchyme
+intersection_of: UBERON:0003104 ! mesenchyme
+intersection_of: part_of UBERON:0008947 ! respiratory primordium
+relationship: develops_from UBERON:0004873 {source="EHDAA2"} ! splanchnopleure
+relationship: part_of UBERON:0008947 ! respiratory primordium
+
+[Term]
 id: UBERON:1000000
 name: chin ventral margin
 def: "Subdivision of the head consisting of the area along the lower edge of the chin." [https://github.com/obophenotype/uberon/issues/34, UBERON:EJS]
@@ -195194,6 +195217,8 @@
 name: parapophysis + rib of vertebra 3
 namespace: uberon/phenoscape-anatomy
 is_a: UBERON:0002513 ! endochondral bone
+is_a: UBERON:0004120 ! mesoderm-derived structure
+relationship: part_of UBERON:2001169 ! vertebral element 3
 created_by: teleost_anatomy_curators
 
 [Term]
@@ -195201,6 +195226,9 @@
 name: parapophysis + rib of vertebra 3 + rib of vertebra 4
 namespace: uberon/phenoscape-anatomy
 is_a: UBERON:0002513 ! endochondral bone
+is_a: UBERON:0004120 ! mesoderm-derived structure
+relationship: part_of UBERON:2001169 ! vertebral element 3
+relationship: part_of UBERON:2001170 ! vertebral element 4
 created_by: teleost_anatomy_curators
 
 [Term]
@@ -206689,7 +206717,7 @@
 
 [Term]
 id: UBERON:3010127
-name: fringe on postaxial edge of Finger IV
+name: fringe on postaxial edge of finger IV
 namespace: uberon/phenoscape-anatomy
 comment: Kok & Castroviejo-Fisher (2008) Zootaxa.
 is_a: UBERON:3010123 ! finger fringes
@@ -206848,7 +206876,7 @@
 
 [Term]
 id: UBERON:3010166
-name: fringe on postaxial edge of Toe V
+name: fringe on postaxial edge of toe V
 namespace: uberon/phenoscape-anatomy
 comment: Kok & Castroviejo-Fisher (2008) Zootaxa.
 is_a: UBERON:3010124 ! toe fringes
@@ -209612,7 +209640,7 @@
 
 [Term]
 id: UBERON:3010836
-name: Posterolateral Supplementary Element
+name: posterolateral supplementary element
 namespace: uberon/phenoscape-anatomy
 def: "A muscle slip arising from the ventral surface of the mandible by means of the ligament near the site of mandibular articulation. The fibers pass anteromedially and attach upon the ventral surfaces of the principal element of the m. intermandibularis (Tyler, 1971)." [AAO:EJS]
 is_a: UBERON:0010931 ! intermandibularis
@@ -209620,7 +209648,7 @@
 
 [Term]
 id: UBERON:3010837
-name: Apical Supplementary Element
+name: apical supplementary element
 namespace: uberon/phenoscape-anatomy
 def: "A muscle slip arising from the lingual surface of the mandible on each side of the m. submentalis. The fibers pass posteromedially and attach upon the median raphe of the principal element (Tyler, 1971)." [AAO:EJS]
 is_a: UBERON:0010931 ! intermandibularis
@@ -209628,7 +209656,7 @@
 
 [Term]
 id: UBERON:3010838
-name: Anterolateral Supplementary Element
+name: anterolateral supplementary element
 namespace: uberon/phenoscape-anatomy
 def: "A muscle slip arising from the lingual surface of the mandible on the anterior portion of the bone. The fibers pass anteriorly, parallel to the mandible, and attach upon the ventral surface of the m. submentalis (Tyler, 1971)." [AAO:EJS]
 is_a: UBERON:0010931 ! intermandibularis
@@ -212462,7 +212490,7 @@
 [Term]
 id: UBERON:4200206
 name: internal rim of coracoid foramen
-synonym: "The internal part of the rim denoting the coracoid foramen. " EXACT []
+def: "The internal part of the rim denoting the coracoid foramen." []
 is_a: UBERON:2001737 ! coracoid foramen
 
 [Term]

Modified: uberon/trunk/basic.owl
===================================================================
--- uberon/trunk/basic.owl	2016-07-30 00:03:28 UTC (rev 5377)
+++ uberon/trunk/basic.owl	2016-08-12 22:29:04 UTC (rev 5378)
@@ -16,7 +16,7 @@
      xmlns:foaf="http://xmlns.com/foaf/0.1/"
      xmlns:dc="http://purl.org/dc/elements/1.1/">
     <owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/basic.owl">
-        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/releases/2016-07-14/basic.owl"/>
+        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/releases/2016-08-12/basic.owl"/>
         <dc:contributor rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Lydie Lane</dc:contributor>
         <dc:contributor rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Paula Mabee</dc:contributor>
         <doap:bug-database rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">https://github.com/obophenotype/uberon/issues/</doap:bug-database>
@@ -41,6 +41,7 @@
         <dc:source rdf:datatype="http://www.w3.org/2001/XMLSchema#string">ISBN10:1588900649 Color Atlas and Textbook of Human Anatomy: Nervous system and sensory organs By Werner Kahle, Michael Frotscher</dc:source>
         <dc:contributor rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Rebecca Foulger</dc:contributor>
         <foaf:homepage rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://uberon.org</foaf:homepage>
+        <rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Includes Ontology(OntologyID(OntologyIRI(&lt;http://purl.obolibrary.org/obo/uberon/ext.owl&gt;) VersionIRI(&lt;null&gt;))) [Axioms: 25782 Logical Axioms: 4722]</rdfs:comment>
         <oboInOwl:treat-xrefs-as-reverse-genus-differentia rdf:datatype="http://www.w3.org/2001/XMLSchema#string">DHBA part_of NCBITaxon:9606</oboInOwl:treat-xrefs-as-reverse-genus-differentia>
         <dc:source rdf:resource="http://uri.neuinfo.org/nif/nifstd"/>
         <oboInOwl:treat-xrefs-as-reverse-genus-differentia rdf:datatype="http://www.w3.org/2001/XMLSchema#string">EMAPA part_of NCBITaxon:10090</oboInOwl:treat-xrefs-as-reverse-genus-differentia>
@@ -109,7 +110,6 @@
         <dc:contributor rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Bill Bug</dc:contributor>
         <dc:creator rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Wasila Dahdul</dc:creator>
         <dc:contributor rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Catherine Leroy</dc:contributor>
-        <rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Includes Ontology(OntologyID(OntologyIRI(&lt;http://purl.obolibrary.org/obo/uberon/ext.owl&gt;) VersionIRI(&lt;null&gt;))) [Axioms: 25779 Logical Axioms: 4719]</rdfs:comment>
         <dc:source rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PMID:16417468 Forgotten and novel aspects in pancreas development, Pieler and Chen</dc:source>
         <oboInOwl:treat-xrefs-as-reverse-genus-differentia rdf:datatype="http://www.w3.org/2001/XMLSchema#string">WBls part_of NCBITaxon:6237</oboInOwl:treat-xrefs-as-reverse-genus-differentia>
         <oboInOwl:treat-xrefs-as-reverse-genus-differentia rdf:datatype="http://www.w3.org/2001/XMLSchema#string">FBdv part_of NCBITaxon:7227</oboInOwl:treat-xrefs-as-reverse-genus-differentia>
@@ -211875,8 +211875,8 @@
         <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">MBA:866</oboInOwl:hasDbXref>
         <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">UMLS:C0175561</oboInOwl:hasDbXref>
         <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=808</oboInOwl:hasDbXref>
-        <oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">gower&apos;s tract</oboInOwl:hasExactSynonym>
-        <oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">gowers&apos; tract</oboInOwl:hasExactSynonym>
+        <oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Gower&apos;s tract</oboInOwl:hasExactSynonym>
+        <oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Gowers&apos; tract</oboInOwl:hasExactSynonym>
         <oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">ventral spinocerebellar tract</oboInOwl:hasExactSynonym>
         <oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">uberon</oboInOwl:hasOBONamespace>
         <oboInOwl:hasRelatedSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">tractus spinocerebellaris anterior</oboInOwl:hasRelatedSynonym>
@@ -211896,6 +211896,17 @@
     </owl:Axiom>
     <owl:Axiom>
         <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/UBERON_0002987"/>
+        <owl:annotatedProperty rdf:resource="http://www.w3.org/2000/01/rdf-schema#subClassOf"/>
+        <owl:annotatedTarget>
+            <owl:Restriction>
+                <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
+                <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_0001896"/>
+            </owl:Restriction>
+        </owl:annotatedTarget>
+        <oboInOwl:source rdf:datatype="http://www.w3.org/2001/XMLSchema#string">FMA</oboInOwl:source>
+    </owl:Axiom>
+    <owl:Axiom>
+        <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/UBERON_0002987"/>
         <owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
         <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Runs through the ventrolateral surface of the spinal cord. It enters the cerebellum through the superior cerebellar peduncle. It crosses the midline at the segmental level and recrosses in the cerebellum. Its terminals are distributed in the cerebellar anterior lobe, preferentially in the ipsilateral intermediate cortex. Rostrally, it extends to lobule II.</owl:annotatedTarget>
         <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">NIFSTD:birnlex_848</oboInOwl:hasDbXref>
@@ -211921,13 +211932,13 @@
     <owl:Axiom>
         <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/UBERON_0002987"/>
         <owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"/>
-        <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">gower&apos;s tract</owl:annotatedTarget>
+        <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Gower&apos;s tract</owl:annotatedTarget>
         <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">NIFSTD:birnlex_848</oboInOwl:hasDbXref>
     </owl:Axiom>
     <owl:Axiom>
         <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/UBERON_0002987"/>
         <owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"/>
-        <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">gowers&apos; tract</owl:annotatedTarget>
+        <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Gowers&apos; tract</owl:annotatedTarget>
         <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">FMA:72642</oboInOwl:hasDbXref>
     </owl:Axiom>
     <owl:Axiom>
@@ -396099,7 +396110,6 @@
         <oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Brodmann area 35</oboInOwl:hasExactSynonym>
         <oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Brodmann area 35, perirhinal</oboInOwl:hasExactSynonym>
         <oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Brodmann&apos;s area 35</oboInOwl:hasExactSynonym>
-        <oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Brodmann.35</oboInOwl:hasExactSynonym>
         <oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">area 35 of Brodmann</oboInOwl:hasExactSynonym>
         <oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">area 35 of Brodmann-1909</oboInOwl:hasExactSynonym>
         <oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">area perirhinalis</oboInOwl:hasExactSynonym>
@@ -396183,12 +396193,6 @@
     <owl:Axiom>
         <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/UBERON_0006102"/>
         <owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"/>
-        <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Brodmann.35</owl:annotatedTarget>
-        <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">NIFSTD:birnlex_1768</oboInOwl:hasDbXref>
-    </owl:Axiom>
-    <owl:Axiom>
-        <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/UBERON_0006102"/>
-        <owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"/>
         <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">area 35 of Brodmann</owl:annotatedTarget>
         <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">FMA:68632</oboInOwl:hasDbXref>
     </owl:Axiom>
@@ -396236,7 +396240,6 @@
         <oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">BA36</oboInOwl:hasExactSynonym>
         <oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Brodmann (1909) area 36</oboInOwl:hasExactSynonym>
         <oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Brodmann area 36</oboInOwl:hasExactSynonym>
-        <oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Brodmann.36</oboInOwl:hasExactSynonym>
         <oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">area 36 of Brodmann</oboInOwl:hasExactSynonym>
         <oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">area 36 of Brodmann-1909</oboInOwl:hasExactSynonym>
         <oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">area ectorhinalis</oboInOwl:hasExactSynonym>
@@ -396309,12 +396312,6 @@
     <owl:Axiom>
         <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/UBERON_0006104"/>
         <owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"/>
-        <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Brodmann.36</owl:annotatedTarget>
-        <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">NIFSTD:birnlex_1769</oboInOwl:hasDbXref>
-    </owl:Axiom>
-    <owl:Axiom>
-        <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/UBERON_0006104"/>
-        <owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"/>
         <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">area 36 of Brodmann</owl:annotatedTarget>
         <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">FMA:68633</oboInOwl:hasDbXref>
     </owl:Axiom>
@@ -573861,7 +573858,6 @@
         <oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Brodmann (1909) area 10</oboInOwl:hasExactSynonym>
         <oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Brodmann area 10</oboInOwl:hasExactSynonym>
         <oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Brodmann area 10, frontoplar</oboInOwl:hasExactSynonym>
-        <oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Brodmann.10</oboInOwl:hasExactSynonym>
         <oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">area 10 of Brodmann</oboInOwl:hasExactSynonym>
         <oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">area 10 of Brodmann-1909</oboInOwl:hasExactSynonym>
         <oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">area frontopolaris</oboInOwl:hasExactSynonym>
@@ -573932,12 +573928,6 @@
     <owl:Axiom>
         <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/UBERON_0013541"/>
         <owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"/>
-        <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Brodmann.10</owl:annotatedTarget>
-        <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">NIFSTD:birnlex_1741</oboInOwl:hasDbXref>
-    </owl:Axiom>
-    <owl:Axiom>
-        <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/UBERON_0013541"/>
-        <owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"/>
         <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">area 10 of Brodmann</owl:annotatedTarget>
         <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">FMA:68607</oboInOwl:hasDbXref>
     </owl:Axiom>
@@ -690437,6 +690427,110 @@
     
 
 
+    <!-- http://purl.obolibrary.org/obo/UBERON_0036072 -->
+
+    <owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0036072">
+        <owl:equivalentClass>
+            <owl:Class>
+                <owl:intersectionOf rdf:parseType="Collection">
+                    <rdf:Description rdf:about="http://purl.obolibrary.org/obo/UBERON_0007499"/>
+                    <owl:Restriction>
+                        <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
+                        <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_0008947"/>
+                    </owl:Restriction>
+                </owl:intersectionOf>
+            </owl:Class>
+        </owl:equivalentClass>
+        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0004185"/>
+        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0005911"/>
+        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0007499"/>
+        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0009854"/>
+        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0015833"/>
+        <rdfs:subClassOf>
+            <owl:Restriction>
+                <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
+                <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_0008947"/>
+            </owl:Restriction>
+        </rdfs:subClassOf>
+        <rdfs:subClassOf>
+            <owl:Restriction>
+                <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0002202"/>
+                <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_0007690"/>
+            </owl:Restriction>
+        </rdfs:subClassOf>
+        <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">EHDAA2:0004070</oboInOwl:hasDbXref>
+        <oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">uberon</oboInOwl:hasOBONamespace>
+        <oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">UBERON:0036072</oboInOwl:id>
+        <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">respiratory primordium epithelium</rdfs:label>
+    </owl:Class>
+    <owl:Axiom>
+        <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/UBERON_0036072"/>
+        <owl:annotatedProperty rdf:resource="http://www.w3.org/2000/01/rdf-schema#subClassOf"/>
+        <owl:annotatedTarget>
+            <owl:Restriction>
+                <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0002202"/>
+                <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_0007690"/>
+            </owl:Restriction>
+        </owl:annotatedTarget>
+        <oboInOwl:source rdf:datatype="http://www.w3.org/2001/XMLSchema#string">EHDAA2</oboInOwl:source>
+    </owl:Axiom>
+    
+
+
+    <!-- http://purl.obolibrary.org/obo/UBERON_0036073 -->
+
+    <owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0036073">
+        <owl:equivalentClass>
+            <owl:Class>
+                <owl:intersectionOf rdf:parseType="Collection">
+                    <rdf:Description rdf:about="http://purl.obolibrary.org/obo/UBERON_0003104"/>
+                    <owl:Restriction>
+                        <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
+                        <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_0008947"/>
+                    </owl:Restriction>
+                </owl:intersectionOf>
+            </owl:Class>
+        </owl:equivalentClass>
+        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000077"/>
+        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0003104"/>
+        <rdfs:subClassOf>
+            <owl:Restriction>
+                <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
+                <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_0008947"/>
+            </owl:Restriction>
+        </rdfs:subClassOf>
+        <rdfs:subClassOf>
+            <owl:Restriction>
+                <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0002202"/>
+                <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_0004873"/>
+            </owl:Restriction>
+        </rdfs:subClassOf>
+        <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">EHDAA2:0004071</oboInOwl:hasDbXref>
+        <oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">respiratory primordium associated mesenchyme</oboInOwl:hasExactSynonym>
+        <oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">uberon</oboInOwl:hasOBONamespace>
+        <oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">UBERON:0036073</oboInOwl:id>
+        <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">respiratory primordium mesenchyme</rdfs:label>
+    </owl:Class>
+    <owl:Axiom>
+        <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/UBERON_0036073"/>
+        <owl:annotatedProperty rdf:resource="http://www.w3.org/2000/01/rdf-schema#subClassOf"/>
+        <owl:annotatedTarget>
+            <owl:Restriction>
+                <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0002202"/>
+                <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_0004873"/>
+            </owl:Restriction>
+        </owl:annotatedTarget>
+        <oboInOwl:source rdf:datatype="http://www.w3.org/2001/XMLSchema#string">EHDAA2</oboInOwl:source>
+    </owl:Axiom>
+    <owl:Axiom>
+        <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/UBERON_0036073"/>
+        <owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"/>
+        <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">respiratory primordium associated mesenchyme</owl:annotatedTarget>
+        <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">EHDAA2:0004071</oboInOwl:hasDbXref>
+    </owl:Axiom>
+    
+
+
     <!-- http://purl.obolibrary.org/obo/UBERON_1000000 -->
 
     <owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_1000000">
@@ -721076,6 +721170,13 @@
 
     <owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_2001882">
         <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0002513"/>
+        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0004120"/>
+        <rdfs:subClassOf>
+            <owl:Restriction>
+                <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
+                <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_2001169"/>
+            </owl:Restriction>
+        </rdfs:subClassOf>
         <core1:provenance_notes rdf:datatype="http://www.w3.org/2001/XMLSchema#string">This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon</core1:provenance_notes>
         <oboInOwl:created_by rdf:datatype="http://www.w3.org/2001/XMLSchema#string">teleost_anatomy_curators</oboInOwl:created_by>
         <oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">uberon/phenoscape-anatomy</oboInOwl:hasOBONamespace>
@@ -721088,6 +721189,19 @@
 
     <owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_2001883">
         <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0002513"/>
+        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0004120"/>
+        <rdfs:subClassOf>
+            <owl:Restriction>
+                <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
+                <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_2001169"/>
+            </owl:Restriction>
+        </rdfs:subClassOf>
+        <rdfs:subClassOf>
+            <owl:Restriction>
+                <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
+                <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_2001170"/>
+            </owl:Restriction>
+        </rdfs:subClassOf>
         <core1:provenance_notes rdf:datatype="http://www.w3.org/2001/XMLSchema#string">This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon</core1:provenance_notes>
         <oboInOwl:created_by rdf:datatype="http://www.w3.org/2001/XMLSchema#string">teleost_anatomy_curators</oboInOwl:created_by>
         <oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">uberon/phenoscape-anatomy</oboInOwl:hasOBONamespace>
@@ -750471,7 +750585,7 @@
         <oboInOwl:created_by rdf:datatype="http://www.w3.org/2001/XMLSchema#string">amphibian_anatomy_curators</oboInOwl:created_by>
         <oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">uberon/phenoscape-anatomy</oboInOwl:hasOBONamespace>
         <rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Kok &amp; Castroviejo-Fisher (2008) Zootaxa.</rdfs:comment>
-        <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">fringe on postaxial edge of Finger IV</rdfs:label>
+        <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">fringe on postaxial edge of finger IV</rdfs:label>
     </owl:Class>
     
 
@@ -750819,7 +750933,7 @@
         <oboInOwl:created_by rdf:datatype="http://www.w3.org/2001/XMLSchema#string">amphibian_anatomy_curators</oboInOwl:created_by>
         <oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">uberon/phenoscape-anatomy</oboInOwl:hasOBONamespace>
         <rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Kok &amp; Castroviejo-Fisher (2008) Zootaxa.</rdfs:comment>
-        <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">fringe on postaxial edge of Toe V</rdfs:label>
+        <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">fringe on postaxial edge of toe V</rdfs:label>
     </owl:Class>
     
 
@@ -757135,7 +757249,7 @@
         <core1:provenance_notes rdf:datatype="http://www.w3.org/2001/XMLSchema#string">This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon</core1:provenance_notes>
         <oboInOwl:created_by rdf:datatype="http://www.w3.org/2001/XMLSchema#string">amphibian_anatomy_curators</oboInOwl:created_by>
         <oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">uberon/phenoscape-anatomy</oboInOwl:hasOBONamespace>
-        <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Posterolateral Supplementary Element</rdfs:label>
+        <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">posterolateral supplementary element</rdfs:label>
     </owl:Class>
     <owl:Axiom>
         <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/UBERON_3010836"/>
@@ -757154,7 +757268,7 @@
         <core1:provenance_notes rdf:datatype="http://www.w3.org/2001/XMLSchema#string">This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon</core1:provenance_notes>
         <oboInOwl:created_by rdf:datatype="http://www.w3.org/2001/XMLSchema#string">amphibian_anatomy_curators</oboInOwl:created_by>
         <oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">uberon/phenoscape-anatomy</oboInOwl:hasOBONamespace>
-        <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Apical Supplementary Element</rdfs:label>
+        <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">apical supplementary element</rdfs:label>
     </owl:Class>
     <owl:Axiom>
         <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/UBERON_3010837"/>
@@ -757173,7 +757287,7 @@
         <core1:provenance_notes rdf:datatype="http://www.w3.org/2001/XMLSchema#string">This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon</core1:provenance_notes>
         <oboInOwl:created_by rdf:datatype="http://www.w3.org/2001/XMLSchema#string">amphibian_anatomy_curators</oboInOwl:created_by>
         <oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">uberon/phenoscape-anatomy</oboInOwl:hasOBONamespace>
-        <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Anterolateral Supplementary Element</rdfs:label>
+        <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">anterolateral supplementary element</rdfs:label>
     </owl:Class>
     <owl:Axiom>
         <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/UBERON_3010838"/>
@@ -763176,7 +763290,7 @@
 
     <owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_4200206">
         <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_2001737"/>
-        <oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">The internal part of the rim denoting the coracoid foramen. </oboInOwl:hasExactSynonym>
+        <obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">The internal part of the rim denoting the coracoid foramen.</obo:IAO_0000115>
         <rdfs:label xml:lang="en">internal rim of coracoid foramen</rdfs:label>
     </owl:Class>
     
@@ -770518,6 +770632,24 @@
             </owl:Restriction>
         </owl:equivalentClass>
     </owl:Class>
+    <owl:Class>
+        <owl:unionOf rdf:parseType="Collection">
+            <owl:Restriction>
+                <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
+                <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_0036072"/>
+            </owl:Restriction>
+            <owl:Restriction>
+                <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
+                <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_0036073"/>
+            </owl:Restriction>
+        </owl:unionOf>
+        <owl:equivalentClass>
+            <owl:Restriction>
+                <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
+                <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_0008947"/>
+            </owl:Restriction>
+        </owl:equivalentClass>
+    </owl:Class>
     <rdf:Description>
         <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#AllDisjointClasses"/>
         <owl:members rdf:parseType="Collection">
@@ -770730,6 +770862,16 @@
             </owl:Restriction>
         </owl:disjointWith>
     </owl:Restriction>
+    <owl:Restriction>
+        <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
+        <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_0036072"/>
+        <owl:disjointWith>
+            <owl:Restriction>
+                <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
+                <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_0036073"/>
+            </owl:Restriction>
+        </owl:disjointWith>
+    </owl:Restriction>
 </rdf:RDF>
 
 

Modified: uberon/trunk/bridge/uberon-bridge-to-aao.obo
===================================================================
--- uberon/trunk/bridge/uberon-bridge-to-aao.obo	2016-07-30 00:03:28 UTC (rev 5377)
+++ uberon/trunk/bridge/uberon-bridge-to-aao.obo	2016-08-12 22:29:04 UTC (rev 5378)
@@ -1,5 +1,5 @@
 ontology: uberon/bridge/uberon-bridge-to-aao
-data-version: 2016-07-14
+data-version: 2016-08-12
 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI
 property_value: dc-title "Uberon bridge to aao" xsd:string
 property_value: dc-description "Equivalence axioms between AAO and Uberon. Note that AAO is in the process of being merged into the core Uberon, so this mapping will become deprecated" xsd:string

Modified: uberon/trunk/bridge/uberon-bridge-to-aao.owl
===================================================================
--- uberon/trunk/bridge/uberon-bridge-to-aao.owl	2016-07-30 00:03:28 UTC (rev 5377)
+++ uberon/trunk/bridge/uberon-bridge-to-aao.owl	2016-08-12 22:29:04 UTC (rev 5378)
@@ -13,7 +13,7 @@
      xmlns:foaf="http://xmlns.com/foaf/0.1/"
      xmlns:dc="http://purl.org/dc/elements/1.1/">
     <owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-aao.owl">
-        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-aao/2016-07-14/uberon/bridge/uberon-bridge-to-aao.owl"/>
+        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-aao/2016-08-12/uberon/bridge/uberon-bridge-to-aao.owl"/>
         <terms:references rdf:resource="http://purl.obolibrary.org/obo/aao.owl"/>
         <rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://purl.obolibrary.org/obo/uberon/references/reference_0000026</rdfs:seeAlso>
         <dc:contributor rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Paula Mabee</dc:contributor>

Modified: uberon/trunk/bridge/uberon-bridge-to-aeo.obo
===================================================================
--- uberon/trunk/bridge/uberon-bridge-to-aeo.obo	2016-07-30 00:03:28 UTC (rev 5377)
+++ uberon/trunk/bridge/uberon-bridge-to-aeo.obo	2016-08-12 22:29:04 UTC (rev 5378)
@@ -1,5 +1,5 @@
 ontology: uberon/bridge/uberon-bridge-to-aeo
-data-version: 2016-07-14
+data-version: 2016-08-12
 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI
 
 [Term]

Modified: uberon/trunk/bridge/uberon-bridge-to-aeo.owl
===================================================================
--- uberon/trunk/bridge/uberon-bridge-to-aeo.owl	2016-07-30 00:03:28 UTC (rev 5377)
+++ uberon/trunk/bridge/uberon-bridge-to-aeo.owl	2016-08-12 22:29:04 UTC (rev 5378)
@@ -13,7 +13,7 @@
      xmlns:foaf="http://xmlns.com/foaf/0.1/"
      xmlns:dc="http://purl.org/dc/elements/1.1/">
     <owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-aeo.owl">
-        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-aeo/2016-07-14/uberon/bridge/uberon-bridge-to-aeo.owl"/>
+        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-aeo/2016-08-12/uberon/bridge/uberon-bridge-to-aeo.owl"/>
         <rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://purl.obolibrary.org/obo/uberon/references/reference_0000026</rdfs:seeAlso>
     </owl:Ontology>
     

Modified: uberon/trunk/bridge/uberon-bridge-to-bila.obo
===================================================================
--- uberon/trunk/bridge/uberon-bridge-to-bila.obo	2016-07-30 00:03:28 UTC (rev 5377)
+++ uberon/trunk/bridge/uberon-bridge-to-bila.obo	2016-08-12 22:29:04 UTC (rev 5378)
@@ -1,5 +1,5 @@
 ontology: uberon/bridge/uberon-bridge-to-bila
-data-version: 2016-07-14
+data-version: 2016-08-12
 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI
 
 [Term]

Modified: uberon/trunk/bridge/uberon-bridge-to-bila.owl
===================================================================
--- uberon/trunk/bridge/uberon-bridge-to-bila.owl	2016-07-30 00:03:28 UTC (rev 5377)
+++ uberon/trunk/bridge/uberon-bridge-to-bila.owl	2016-08-12 22:29:04 UTC (rev 5378)
@@ -13,7 +13,7 @@
      xmlns:foaf="http://xmlns.com/foaf/0.1/"
      xmlns:dc="http://purl.org/dc/elements/1.1/">
     <owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-bila.owl">
-        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-bila/2016-07-14/uberon/bridge/uberon-bridge-to-bila.owl"/>
+        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-bila/2016-08-12/uberon/bridge/uberon-bridge-to-bila.owl"/>
         <rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://purl.obolibrary.org/obo/uberon/references/reference_0000026</rdfs:seeAlso>
     </owl:Ontology>
     

Modified: uberon/trunk/bridge/uberon-bridge-to-caro.obo
===================================================================
--- uberon/trunk/bridge/uberon-bridge-to-caro.obo	2016-07-30 00:03:28 UTC (rev 5377)
+++ uberon/trunk/bridge/uberon-bridge-to-caro.obo	2016-08-12 22:29:04 UTC (rev 5378)
@@ -1,5 +1,5 @@
 ontology: uberon/bridge/uberon-bridge-to-caro
-data-version: 2016-07-14
+data-version: 2016-08-12
 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI
 
 [Term]

Modified: uberon/trunk/bridge/uberon-bridge-to-caro.owl
===================================================================
--- uberon/trunk/bridge/uberon-bridge-to-caro.owl	2016-07-30 00:03:28 UTC (rev 5377)
+++ uberon/trunk/bridge/uberon-bridge-to-caro.owl	2016-08-12 22:29:04 UTC (rev 5378)
@@ -13,7 +13,7 @@
      xmlns:foaf="http://xmlns.com/foaf/0.1/"
      xmlns:dc="http://purl.org/dc/elements/1.1/">
     <owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-caro.owl">
-        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-caro/2016-07-14/uberon/bridge/uberon-bridge-to-caro.owl"/>
+        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-caro/2016-08-12/uberon/bridge/uberon-bridge-to-caro.owl"/>
         <rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://purl.obolibrary.org/obo/uberon/references/reference_0000026</rdfs:seeAlso>
     </owl:Ontology>
     

Modified: uberon/trunk/bridge/uberon-bridge-to-dhba.obo
===================================================================
--- uberon/trunk/bridge/uberon-bridge-to-dhba.obo	2016-07-30 00:03:28 UTC (rev 5377)
+++ uberon/trunk/bridge/uberon-bridge-to-dhba.obo	2016-08-12 22:29:04 UTC (rev 5378)
@@ -1,5 +1,5 @@
 ontology: uberon/bridge/uberon-bridge-to-dhba
-data-version: 2016-07-14
+data-version: 2016-08-12
 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI
 
 [Term]

Modified: uberon/trunk/bridge/uberon-bridge-to-dhba.owl
===================================================================
--- uberon/trunk/bridge/uberon-bridge-to-dhba.owl	2016-07-30 00:03:28 UTC (rev 5377)
+++ uberon/trunk/bridge/uberon-bridge-to-dhba.owl	2016-08-12 22:29:04 UTC (rev 5378)
@@ -13,7 +13,7 @@
      xmlns:foaf="http://xmlns.com/foaf/0.1/"
      xmlns:dc="http://purl.org/dc/elements/1.1/">
     <owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-dhba.owl">
-        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-dhba/2016-07-14/uberon/bridge/uberon-bridge-to-dhba.owl"/>
+        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-dhba/2016-08-12/uberon/bridge/uberon-bridge-to-dhba.owl"/>
         <rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://purl.obolibrary.org/obo/uberon/references/reference_0000026</rdfs:seeAlso>
     </owl:Ontology>
     

Modified: uberon/trunk/bridge/uberon-bridge-to-dmba.obo
===================================================================
--- uberon/trunk/bridge/uberon-bridge-to-dmba.obo	2016-07-30 00:03:28 UTC (rev 5377)
+++ uberon/trunk/bridge/uberon-bridge-to-dmba.obo	2016-08-12 22:29:04 UTC (rev 5378)
@@ -1,5 +1,5 @@
 ontology: uberon/bridge/uberon-bridge-to-dmba
-data-version: 2016-07-14
+data-version: 2016-08-12
 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI
 
 [Term]

Modified: uberon/trunk/bridge/uberon-bridge-to-dmba.owl
===================================================================
--- uberon/trunk/bridge/uberon-bridge-to-dmba.owl	2016-07-30 00:03:28 UTC (rev 5377)
+++ uberon/trunk/bridge/uberon-bridge-to-dmba.owl	2016-08-12 22:29:04 UTC (rev 5378)
@@ -13,7 +13,7 @@
      xmlns:foaf="http://xmlns.com/foaf/0.1/"
      xmlns:dc="http://purl.org/dc/elements/1.1/">
     <owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-dmba.owl">
-        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-dmba/2016-07-14/uberon/bridge/uberon-bridge-to-dmba.owl"/>
+        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-dmba/2016-08-12/uberon/bridge/uberon-bridge-to-dmba.owl"/>
         <rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://purl.obolibrary.org/obo/uberon/references/reference_0000026</rdfs:seeAlso>
     </owl:Ontology>
     

Modified: uberon/trunk/bridge/uberon-bridge-to-efo.obo
===================================================================
--- uberon/trunk/bridge/uberon-bridge-to-efo.obo	2016-07-30 00:03:28 UTC (rev 5377)
+++ uberon/trunk/bridge/uberon-bridge-to-efo.obo	2016-08-12 22:29:04 UTC (rev 5378)
@@ -1,5 +1,5 @@
 ontology: uberon/bridge/uberon-bridge-to-efo
-data-version: 2016-07-14
+data-version: 2016-08-12
 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI
 
 [Term]

Modified: uberon/trunk/bridge/uberon-bridge-to-efo.owl
===================================================================
--- uberon/trunk/bridge/uberon-bridge-to-efo.owl	2016-07-30 00:03:28 UTC (rev 5377)
+++ uberon/trunk/bridge/uberon-bridge-to-efo.owl	2016-08-12 22:29:04 UTC (rev 5378)
@@ -13,7 +13,7 @@
      xmlns:foaf="http://xmlns.com/foaf/0.1/"
      xmlns:dc="http://purl.org/dc/elements/1.1/">
     <owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-efo.owl">
-        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-efo/2016-07-14/uberon/bridge/uberon-bridge-to-efo.owl"/>
+        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-efo/2016-08-12/uberon/bridge/uberon-bridge-to-efo.owl"/>
         <rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://purl.obolibrary.org/obo/uberon/references/reference_0000026</rdfs:seeAlso>
     </owl:Ontology>
     

Modified: uberon/trunk/bridge/uberon-bridge-to-ehdaa.obo
===================================================================
--- uberon/trunk/bridge/uberon-bridge-to-ehdaa.obo	2016-07-30 00:03:28 UTC (rev 5377)
+++ uberon/trunk/bridge/uberon-bridge-to-ehdaa.obo	2016-08-12 22:29:04 UTC (rev 5378)
@@ -1,5 +1,5 @@
 ontology: uberon/bridge/uberon-bridge-to-ehdaa
-data-version: 2016-07-14
+data-version: 2016-08-12
 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI
 
 [Term]

Modified: uberon/trunk/bridge/uberon-bridge-to-ehdaa.owl
===================================================================
--- uberon/trunk/bridge/uberon-bridge-to-ehdaa.owl	2016-07-30 00:03:28 UTC (rev 5377)
+++ uberon/trunk/bridge/uberon-bridge-to-ehdaa.owl	2016-08-12 22:29:04 UTC (rev 5378)
@@ -13,7 +13,7 @@
      xmlns:foaf="http://xmlns.com/foaf/0.1/"
      xmlns:dc="http://purl.org/dc/elements/1.1/">
     <owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-ehdaa.owl">
-        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-ehdaa/2016-07-14/uberon/bridge/uberon-bridge-to-ehdaa.owl"/>
+        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-ehdaa/2016-08-12/uberon/bridge/uberon-bridge-to-ehdaa.owl"/>
         <rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://purl.obolibrary.org/obo/uberon/references/reference_0000026</rdfs:seeAlso>
     </owl:Ontology>
     

Modified: uberon/trunk/bridge/uberon-bridge-to-ehdaa2.obo
===================================================================
--- uberon/trunk/bridge/uberon-bridge-to-ehdaa2.obo	2016-07-30 00:03:28 UTC (rev 5377)
+++ uberon/trunk/bridge/uberon-bridge-to-ehdaa2.obo	2016-08-12 22:29:04 UTC (rev 5378)
@@ -1,5 +1,5 @@
 ontology: uberon/bridge/uberon-bridge-to-ehdaa2
-data-version: 2016-07-14
+data-version: 2016-08-12
 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI
 property_value: dc-title "Uberon bridge to ehdaa2" xsd:string
 property_value: dc-description "Equivalence axioms between EHDAA2 and Uberon. EHDAA2 replaces EHDAA" xsd:string
@@ -8877,6 +8877,18 @@
 intersection_of: part_of NCBITaxon:9606
 
 [Term]
+id: EHDAA2:0004070 ! 
+property_value: IAO:0000589 "respiratory primordium epithelium (embryonic human)" xsd:string
+intersection_of: UBERON:0036072 ! respiratory primordium epithelium
+intersection_of: part_of NCBITaxon:9606
+
+[Term]
+id: EHDAA2:0004071 ! 
+property_value: IAO:0000589 "respiratory primordium mesenchyme (embryonic human)" xsd:string
+intersection_of: UBERON:0036073 ! respiratory primordium mesenchyme
+intersection_of: part_of NCBITaxon:9606
+
+[Term]
 id: EHDAA2:ENTITY
 name: EHDAA2 entity
 intersection_of: UBERON:0001062 ! anatomical entity

Modified: uberon/trunk/bridge/uberon-bridge-to-ehdaa2.owl
===================================================================
--- uberon/trunk/bridge/uberon-bridge-to-ehdaa2.owl	2016-07-30 00:03:28 UTC (rev 5377)
+++ uberon/trunk/bridge/uberon-bridge-to-ehdaa2.owl	2016-08-12 22:29:04 UTC (rev 5378)
@@ -13,7 +13,7 @@
      xmlns:foaf="http://xmlns.com/foaf/0.1/"
      xmlns:dc="http://purl.org/dc/elements/1.1/">
     <owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-ehdaa2.owl">
-        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-ehdaa2/2016-07-14/uberon/bridge/uberon-bridge-to-ehdaa2.owl"/>
+        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-ehdaa2/2016-08-12/uberon/bridge/uberon-bridge-to-ehdaa2.owl"/>
         <dc:contributor rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Jonathan Bard</dc:contributor>
         <rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://purl.obolibrary.org/obo/uberon/references/reference_0000026</rdfs:seeAlso>
         <terms:references rdf:resource="http://purl.obolibrary.org/obo/uberon.owl"/>
@@ -26074,6 +26074,46 @@
     
 
 
+    <!-- http://purl.obolibrary.org/obo/EHDAA2_0004070 -->
+
+    <owl:Class rdf:about="http://purl.obolibrary.org/obo/EHDAA2_0004070">
+        <owl:equivalentClass>
+            <owl:Class>
+                <owl:intersectionOf rdf:parseType="Collection">
+                    <rdf:Description rdf:about="http://purl.obolibrary.org/obo/UBERON_0036072"/>
+                    <owl:Restriction>
+                        <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
+                        <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_9606"/>
+                    </owl:Restriction>
+                </owl:intersectionOf>
+            </owl:Class>
+        </owl:equivalentClass>
+        <obo:IAO_0000589 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">respiratory primordium epithelium (embryonic human)</obo:IAO_0000589>
+        <oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">EHDAA2:0004070</oboInOwl:id>
+    </owl:Class>
+    
+
+
+    <!-- http://purl.obolibrary.org/obo/EHDAA2_0004071 -->
+
+    <owl:Class rdf:about="http://purl.obolibrary.org/obo/EHDAA2_0004071">
+        <owl:equivalentClass>
+            <owl:Class>
+                <owl:intersectionOf rdf:parseType="Collection">
+                    <rdf:Description rdf:about="http://purl.obolibrary.org/obo/UBERON_0036073"/>
+                    <owl:Restriction>
+                        <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
+                        <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_9606"/>
+                    </owl:Restriction>
+                </owl:intersectionOf>
+            </owl:Class>
+        </owl:equivalentClass>
+        <obo:IAO_0000589 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">respiratory primordium mesenchyme (embryonic human)</obo:IAO_0000589>
+        <oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">EHDAA2:0004071</oboInOwl:id>
+    </owl:Class>
+    
+
+
     <!-- http://purl.obolibrary.org/obo/EHDAA2_0004072 -->
 
     <owl:Class rdf:about="http://purl.obolibrary.org/obo/EHDAA2_0004072">
@@ -38511,6 +38551,18 @@
     <!-- http://p...
 
[truncated message content]

[Obo-svn-commit] SF.net SVN: obo:[5377] uberon/trunk/subsets/mouse-view.obo

[<cmu...@us...>]

Revision: 5377
          http://sourceforge.net/p/obo/svn/5377
Author:   cmungall
Date:     2016-07-30 00:03:28 +0000 (Sat, 30 Jul 2016)
Log Message:
-----------
new

Added Paths:
-----------
    uberon/trunk/subsets/mouse-view.obo

Added: uberon/trunk/subsets/mouse-view.obo
===================================================================
--- uberon/trunk/subsets/mouse-view.obo	                        (rev 0)
+++ uberon/trunk/subsets/mouse-view.obo	2016-07-30 00:03:28 UTC (rev 5377)
@@ -0,0 +1,296523 @@
+format-version: 1.2
+subsetdef: cumbo "CUMBO"
+subsetdef: cyclostome_subset "cyclostome structures"
+subsetdef: defined_by_cytoarchitecture "brain region defined by cyto-architecture"
+subsetdef: defined_by_ordinal_series "classes that are defined by relative position counting from first in a series of elements along an axis in an individual organism rather than by strict homology"
+subsetdef: developmental_classification "developmental_classification"
+subsetdef: dubious_grouping "Indicates that subclasses in AOs may be inappropriately linked"
+subsetdef: early_development "A class that represents an early developmental structure, like a blastocyst. This part of the ontology is undergoing review to remove inappropriate grouping classes."
+subsetdef: efo_slim "EFO slim"
+subsetdef: emapa_ehdaa2 "derived from the union of EHDAA2 and EMAPA - still to be checked"
+subsetdef: feed_aligned "subset of classes that have logical defs text defs and synonyms aligned with FEED"
+subsetdef: functional_classification "functional_classification"
+subsetdef: granular_stage ""
+subsetdef: grouping_class "Subset consisting of classes creating for grouping purposes"
+subsetdef: homology_grouping "A grouping class that depends on an assumption of homology between subclasses"
+subsetdef: inconsistent_with_fma "classes that have some inconsistency with FMA"
+subsetdef: major_organ "somewhat fuzzy grouping for analysis purposes, currently composed of something like: liver, heart, skeletal, kidney, bladder, brain, skin, mouth, esophagus, stomach, small intestine, large intestines, trachea nose, lungs, brain, spinal cord,  peripheral nerves, kidneys, ureters, bladder, urethra, gonads"
+subsetdef: metazoa_core "core classes typically found across metazoa. one purpose is to create a rough set of terms that could be used to start a new metazoan AO. Note this subset is not yet fully fleshed out"
+subsetdef: non_informative "abstract class brought in to group ontology classes but not informative"
+subsetdef: organ_slim "organs, excluding individual muscles and skeletal elements"
+subsetdef: pheno_slim "Phenotype slim"
+subsetdef: phenotype_rcn "A subset specifically created for the 2012 Phenotype RCN meeting. Includes some human-specific terms that may eventually be removed when they are adequately represented with part of relationships in FMA"
+subsetdef: uberon_slim "Uberon slim - subset that excludes obscure terms and deep compositional terms"
+subsetdef: ubprop:upper_level "abstract upper-level terms not directly useful for analysis"
+subsetdef: unverified_taxonomic_grouping "Indicates that the class encompasses classes from other AOs that have not been verified"
+subsetdef: upper_level "abstract upper-level terms not directly useful for analysis"
+subsetdef: vertebrate_core "core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO"
+synonymtypedef: ABBREVIATION "abbreviation"
+synonymtypedef: COMPARATIVE_PREFERRED "preferred term in the context of comparative anatomy"
+synonymtypedef: DEPRECATED "A historic synonym, no longer encouraged"
+synonymtypedef: DEVELOPMENTAL "developmental term"
+synonymtypedef: DUBIOUS "dubious or contested synonym"
+synonymtypedef: HOMOLOGY "a synonym made on the basis of a possibly homologous structure in another species"
+synonymtypedef: HUMAN_PREFERRED "preferred term when talking about an instance of this class in Homo sapiens"
+synonymtypedef: INCONSISTENT "indicates that a synonym is used in an inconsistent or confusing way, typically between species"
+synonymtypedef: LATIN "latin term"
+synonymtypedef: NON_AMNIOTE "synonym that is inappropriate for amniotes"
+synonymtypedef: NON_MAMMAL "synonym that is inappropriate for mammals"
+synonymtypedef: PENDING_REVIEW "expert consultation and attribution required"
+synonymtypedef: PLURAL "plural term"
+synonymtypedef: SENSU "taxonomic disambiguation"
+remark: Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/emapa.owl>) VersionIRI(<http://purl.obolibrary.org/obo/emapa/releases/2016-05-13/emapa.owl>))) [Axioms: 32985 Logical Axioms: 19168]
+remark: Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-emapa.owl>) VersionIRI(<http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-emapa/2014-05-27/uberon/bridge/cl-bridge-to-emapa.owl>))) [Axioms: 166 Logical Axioms: 13]
+remark: Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-emapa.owl>) VersionIRI(<http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-emapa/2016-07-29/uberon/bridge/uberon-bridge-to-emapa.owl>))) [Axioms: 17979 Logical Axioms: 3591]
+remark: Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/uberon/chebi_import.owl>) VersionIRI(<http://purl.obolibrary.org/obo/uberon/releases/2016-07-14/chebi_import.owl>))) [Axioms: 620 Logical Axioms: 262]
+remark: Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/uberon/cl_import.owl>) VersionIRI(<http://purl.obolibrary.org/obo/uberon/releases/2016-07-14/cl_import.owl>))) [Axioms: 23056 Logical Axioms: 5063]
+remark: Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/uberon/contexts/context-mouse.owl>) VersionIRI(<null>))) [Axioms: 2 Logical Axioms: 2]
+remark: Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/uberon/envo_import.owl>) VersionIRI(<http://purl.obolibrary.org/obo/uberon/releases/2013-10-21/envo_import.owl>))) [Axioms: 28 Logical Axioms: 7]
+remark: Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/uberon/ext.owl>) VersionIRI(<http://purl.obolibrary.org/obo/uberon/releases/2014-05-17/ext.owl>))) [Axioms: 2327 Logical Axioms: 1383]
+remark: Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/uberon/ext.owl>) VersionIRI(<http://purl.obolibrary.org/obo/uberon/releases/2016-07-29/ext.owl>))) [Axioms: 262041 Logical Axioms: 56899]
+remark: Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/uberon/go_import.owl>) VersionIRI(<http://purl.obolibrary.org/obo/uberon/releases/2016-07-14/go_import.owl>))) [Axioms: 6651 Logical Axioms: 3966]
+remark: Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/uberon/nbo_import.owl>) VersionIRI(<http://purl.obolibrary.org/obo/uberon/releases/2013-10-21/nbo_import.owl>))) [Axioms: 30 Logical Axioms: 9]
+remark: Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/uberon/ncbitaxon_import.owl>) VersionIRI(<http://purl.obolibrary.org/obo/uberon/releases/2016-07-14/ncbitaxon_import.owl>))) [Axioms: 1883 Logical Axioms: 1059]
+remark: Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/uberon/pato_import.owl>) VersionIRI(<http://purl.obolibrary.org/obo/uberon/releases/2016-07-14/pato_import.owl>))) [Axioms: 315 Logical Axioms: 105]
+remark: Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/uberon/pr_import.owl>) VersionIRI(<http://purl.obolibrary.org/obo/uberon/releases/2016-07-14/pr_import.owl>))) [Axioms: 42 Logical Axioms: 13]
+remark: Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/uberon/ro_import.owl>) VersionIRI(<null>))) [Axioms: 615 Logical Axioms: 217]
+ontology: uberon/bridge/collected-mouse
+
+[Term]
+id: BFO:0000004
+
+[Term]
+id: BFO:0000015
+
+[Term]
+id: BFO:0000030
+name: object
+is_a: BFO:0000040 ! material entity
+
+[Term]
+id: BFO:0000040
+name: material entity
+is_a: BFO:0000004
+
+[Term]
+id: BFO:0000141
+is_a: BFO:0000004
+
+[Term]
+id: CHEBI:15440
+name: squalene
+is_a: CHEBI:35191 ! triterpene
+
+[Term]
+id: CHEBI:16247
+name: phospholipid
+is_a: CHEBI:18059 ! lipid
+is_a: CHEBI:25703 ! organic phosphate
+is_a: CHEBI:37734 ! phosphoric ester
+
+[Term]
+id: CHEBI:16526
+name: carbon dioxide
+is_a: CHEBI:23014 ! carbon oxide
+is_a: CHEBI:64708 ! one-carbon compound
+
+[Term]
+id: CHEBI:16646
+name: carbohydrate
+is_a: CHEBI:78616 ! carbohydrates and carbohydrate derivatives
+
+[Term]
+id: CHEBI:16990
+name: bilirubin
+is_a: CHEBI:35692 ! dicarboxylic acid
+is_a: CHEBI:36735 ! biladienes
+
+[Term]
+id: CHEBI:17029
+name: chitin
+is_a: CHEBI:21638 ! N-acylglucosamine
+is_a: CHEBI:22506 ! aminoglycan
+
+[Term]
+id: CHEBI:17089
+name: glycoprotein
+is_a: CHEBI:33837 ! conjugated protein
+is_a: CHEBI:63299 ! carbohydrate derivative
+
+[Term]
+id: CHEBI:17761
+name: ceramide
+is_a: CHEBI:26739 ! sphingolipid
+is_a: CHEBI:37622 ! carboxamide
+
+[Term]
+id: CHEBI:18059
+name: lipid
+is_a: CHEBI:50860 ! organic molecular entity
+
+[Term]
+id: CHEBI:18085
+name: glycosaminoglycan
+is_a: CHEBI:22506 ! aminoglycan
+
+[Term]
+id: CHEBI:18154
+name: polysaccharide
+is_a: CHEBI:16646 ! carbohydrate
+is_a: CHEBI:33694 ! biomacromolecule
+
+[Term]
+id: CHEBI:18246
+name: (1->4)-beta-D-glucan
+is_a: CHEBI:28793 ! beta-D-glucan
+
+[Term]
+id: CHEBI:21638
+name: N-acylglucosamine
+is_a: CHEBI:21656 ! N-acyl-hexosamine
+is_a: CHEBI:24271 ! glucosamines
+
+[Term]
+id: CHEBI:21656
+name: N-acyl-hexosamine
+is_a: CHEBI:24586 ! hexosamine
+
+[Term]
+id: CHEBI:22506
+name: aminoglycan
+is_a: CHEBI:35352 ! organonitrogen compound
+is_a: CHEBI:65212 ! polysaccharide derivative
+
+[Term]
+id: CHEBI:22868
+name: bile salt
+is_a: CHEBI:36078 ! cholanoid
+is_a: CHEBI:38700 ! organic sodium salt
+
+[Term]
+id: CHEBI:22985
+name: calcium molecular entity
+is_a: CHEBI:33299 ! alkaline earth molecular entity
+
+[Term]
+id: CHEBI:23014
+name: carbon oxide
+is_a: CHEBI:25701 ! organic oxide
+is_a: CHEBI:36963 ! organooxygen compound
+
+[Term]
+id: CHEBI:23016
+name: carbonates
+is_a: CHEBI:36963 ! organooxygen compound
+
+[Term]
+id: CHEBI:23044
+name: carotenoid
+is_a: CHEBI:26935 ! tetraterpenoid
+
+[Term]
+id: CHEBI:23045
+name: carotenol
+is_a: CHEBI:27325 ! xanthophyll
+
+[Term]
+id: CHEBI:23079
+name: cerebroside
+is_a: CHEBI:17761 ! ceramide
+is_a: CHEBI:25513 ! neutral glycosphingolipid
+
+[Term]
+id: CHEBI:23213
+name: choline ester
+is_a: CHEBI:35701 ! ester
+
+[Term]
+id: CHEBI:23217
+name: cholines
+is_a: CHEBI:35267 ! quaternary ammonium ion
+
+[Term]
+id: CHEBI:23367
+name: molecular entity
+is_a: BFO:0000030 ! object
+is_a: CHEBI:24431 ! chemical entity
+
+[Term]
+id: CHEBI:24271
+name: glucosamines
+is_a: CHEBI:24586 ! hexosamine
+
+[Term]
+id: CHEBI:24402
+name: glycosphingolipid
+is_a: CHEBI:26739 ! sphingolipid
+is_a: CHEBI:33563 ! glycolipid
+
+[Term]
+id: CHEBI:24431
+name: chemical entity
+
+[Term]
+id: CHEBI:24532
+name: organic heterocyclic compound
+is_a: CHEBI:33285 ! heteroorganic entity
+is_a: CHEBI:33832 ! organic cyclic compound
+is_a: CHEBI:5686 ! heterocyclic compound
+
+[Term]
+id: CHEBI:24586
+name: hexosamine
+is_a: CHEBI:60926 ! amino monosaccharide
+
+[Term]
+id: CHEBI:24632
+name: hydrocarbon
+is_a: CHEBI:33245 ! organic fundamental parent
+
+[Term]
+id: CHEBI:24651
+name: hydroxides
+is_a: CHEBI:25806 ! oxygen molecular entity
+is_a: CHEBI:33608 ! hydrogen molecular entity
+is_a: CHEBI:37577 ! heteroatomic molecular entity
+
+[Term]
+id: CHEBI:24833
+name: oxoacid
+is_a: CHEBI:24651 ! hydroxides
+
+[Term]
+id: CHEBI:24866
+name: salt
+is_a: CHEBI:37577 ! heteroatomic molecular entity
+
+[Term]
+id: CHEBI:24868
+name: organic salt
+is_a: CHEBI:24866 ! salt
+
+[Term]
+id: CHEBI:24870
+name: ion
+is_a: CHEBI:23367 ! molecular entity
+
+[Term]
+id: CHEBI:24913
+name: isoprenoid
+is_a: CHEBI:18059 ! lipid
+
+[Term]
+id: CHEBI:25046
+name: linear tetrapyrrole
+is_a: CHEBI:26932 ! tetrapyrrole
+
+[Term]
+id: CHEBI:25367
+name: molecule
+is_a: CHEBI:36357 ! polyatomic entity
+
+[Term]
+id: CHEBI:25513
+name: neutral glycosphingolipid
+is_a: CHEBI:24402 ! glycosphingolipid
+
+[Term]
+id: CHEBI:25585
+name: nonmetal atom
+is_a: CHEBI:33250 ! atom
+
+[Term]
+id: CHEBI:25701
+name: organic oxide
+is_a: CHEBI:25741 ! oxide
+
+[Term]
+id: CHEBI:25703
+name: organic phosphate
+is_a: CHEBI:25710 ! organophosphorus compound
+is_a: CHEBI:26020 ! phosphate
+
+[Term]
+id: CHEBI:25704
+name: organic sulfate
+is_a: CHEBI:26820 ! sulfates
+is_a: CHEBI:33261 ! organosulfur compound
+
+[Term]
+id: CHEBI:25710
+name: organophosphorus compound
+is_a: CHEBI:26082 ! phosphorus molecular entity
+is_a: CHEBI:33285 ! heteroorganic entity
+
+[Term]
+id: CHEBI:25741
+name: oxide
+is_a: CHEBI:25806 ! oxygen molecular entity
+is_a: CHEBI:37577 ! heteroatomic molecular entity
+
+[Term]
+id: CHEBI:25805
+name: oxygen atom
+is_a: CHEBI:25585 ! nonmetal atom
+is_a: CHEBI:33303 ! chalcogen
+
+[Term]
+id: CHEBI:25806
+name: oxygen molecular entity
+is_a: CHEBI:33304 ! chalcogen molecular entity
+
+[Term]
+id: CHEBI:26020
+name: phosphate
+is_a: CHEBI:26079 ! phosphoric acid derivative
+
+[Term]
+id: CHEBI:26079
+name: phosphoric acid derivative
+is_a: CHEBI:36359 ! phosphorus oxoacid derivative
+
+[Term]
+id: CHEBI:26082
+name: phosphorus molecular entity
+is_a: CHEBI:33302 ! pnictogen molecular entity
+
+[Term]
+id: CHEBI:26214
+name: porphyrins
+is_a: CHEBI:36309 ! cyclic tetrapyrrole
+
+[Term]
+id: CHEBI:26469
+name: quaternary nitrogen compound
+is_a: CHEBI:35352 ! organonitrogen compound
+
+[Term]
+id: CHEBI:26712
+name: sodium molecular entity
+is_a: CHEBI:33296 ! alkali metal molecular entity
+
+[Term]
+id: CHEBI:26714
+name: sodium salt
+is_a: CHEBI:26712 ! sodium molecular entity
+is_a: CHEBI:35479 ! alkali metal salt
+
+[Term]
+id: CHEBI:26739
+name: sphingolipid
+is_a: CHEBI:18059 ! lipid
+is_a: CHEBI:35352 ! organonitrogen compound
+is_a: CHEBI:36963 ! organooxygen compound
+
+[Term]
+id: CHEBI:26819
+name: sulfuric ester
+is_a: CHEBI:35701 ! ester
+is_a: CHEBI:37826 ! sulfuric acid derivative
+
+[Term]
+id: CHEBI:26820
+name: sulfates
+is_a: CHEBI:37826 ! sulfuric acid derivative
+
+[Term]
+id: CHEBI:26835
+name: sulfur molecular entity
+is_a: CHEBI:33304 ! chalcogen molecular entity
+
+[Term]
+id: CHEBI:26873
+name: terpenoid
+is_a: CHEBI:24913 ! isoprenoid
+
+[Term]
+id: CHEBI:26932
+name: tetrapyrrole
+is_a: CHEBI:33833 ! heteroarene
+is_a: CHEBI:38077 ! polypyrrole
+
+[Term]
+id: CHEBI:26935
+name: tetraterpenoid
+is_a: CHEBI:26873 ! terpenoid
+
+[Term]
+id: CHEBI:27325
+name: xanthophyll
+is_a: CHEBI:23044 ! carotenoid
+
+[Term]
+id: CHEBI:27369
+name: zwitterion
+is_a: CHEBI:51151 ! dipolar compound
+
+[Term]
+id: CHEBI:27547
+name: zeaxanthin
+is_a: CHEBI:23045 ! carotenol
+
+[Term]
+id: CHEBI:28793
+name: beta-D-glucan
+is_a: CHEBI:37163 ! glucan
+
+[Term]
+id: CHEBI:28838
+name: lutein
+is_a: CHEBI:23045 ! carotenol
+
+[Term]
+id: CHEBI:28963
+name: amino sugar
+is_a: CHEBI:63299 ! carbohydrate derivative
+
+[Term]
+id: CHEBI:32988
+name: amide
+is_a: CHEBI:51143 ! nitrogen molecular entity
+
+[Term]
+id: CHEBI:3311
+name: calcium carbonate
+is_a: CHEBI:35156 ! calcium salt
+is_a: CHEBI:46721 ! carbonate salt
+is_a: CHEBI:64708 ! one-carbon compound
+
+[Term]
+id: CHEBI:33241
+name: oxoacid derivative
+is_a: CHEBI:37577 ! heteroatomic molecular entity
+
+[Term]
+id: CHEBI:33245
+name: organic fundamental parent
+is_a: CHEBI:37175 ! organic hydride
+is_a: CHEBI:50860 ! organic molecular entity
+
+[Term]
+id: CHEBI:33250
+name: atom
+is_a: CHEBI:24431 ! chemical entity
+
+[Term]
+id: CHEBI:33256
+name: primary amide
+is_a: CHEBI:32988 ! amide
+
+[Term]
+id: CHEBI:33261
+name: organosulfur compound
+is_a: CHEBI:26835 ! sulfur molecular entity
+is_a: CHEBI:36962 ! organochalcogen compound
+
+[Term]
+id: CHEBI:33285
+name: heteroorganic entity
+is_a: CHEBI:50860 ! organic molecular entity
+
+[Term]
+id: CHEBI:33296
+name: alkali metal molecular entity
+is_a: CHEBI:33674 ! s-block molecular entity
+
+[Term]
+id: CHEBI:33299
+name: alkaline earth molecular entity
+is_a: CHEBI:33674 ! s-block molecular entity
+
+[Term]
+id: CHEBI:33302
+name: pnictogen molecular entity
+is_a: CHEBI:33675 ! p-block molecular entity
+
+[Term]
+id: CHEBI:33303
+name: chalcogen
+is_a: CHEBI:33560 ! p-block element atom
+
+[Term]
+id: CHEBI:33304
+name: chalcogen molecular entity
+is_a: CHEBI:33675 ! p-block molecular entity
+
+[Term]
+id: CHEBI:33318
+name: main group element atom
+is_a: CHEBI:33250 ! atom
+
+[Term]
+id: CHEBI:33424
+name: sulfur oxoacid derivative
+is_a: CHEBI:26835 ! sulfur molecular entity
+is_a: CHEBI:33241 ! oxoacid derivative
+
+[Term]
+id: CHEBI:33560
+name: p-block element atom
+is_a: CHEBI:33318 ! main group element atom
+
+[Term]
+id: CHEBI:33563
+name: glycolipid
+is_a: CHEBI:35740 ! liposaccharide
+
+[Term]
+id: CHEBI:33575
+name: carboxylic acid
+is_a: CHEBI:35605 ! carbon oxoacid
+is_a: CHEBI:36586 ! carbonyl compound
+is_a: CHEBI:64709 ! organic acid
+
+[Term]
+id: CHEBI:33579
+name: main group molecular entity
+is_a: CHEBI:23367 ! molecular entity
+
+[Term]
+id: CHEBI:33582
+name: carbon group molecular entity
+is_a: CHEBI:33675 ! p-block molecular entity
+
+[Term]
+id: CHEBI:33595
+name: cyclic compound
+is_a: CHEBI:25367 ! molecule
+
+[Term]
+id: CHEBI:33608
+name: hydrogen molecular entity
+is_a: CHEBI:33674 ! s-block molecular entity
+
+[Term]
+id: CHEBI:33635
+name: polycyclic compound
+is_a: CHEBI:33595 ! cyclic compound
+
+[Term]
+id: CHEBI:33655
+name: aromatic compound
+is_a: CHEBI:33595 ! cyclic compound
+
+[Term]
+id: CHEBI:33659
+name: organic aromatic compound
+is_a: CHEBI:33655 ! aromatic compound
+is_a: CHEBI:33832 ! organic cyclic compound
+
+[Term]
+id: CHEBI:33674
+name: s-block molecular entity
+is_a: CHEBI:33579 ! main group molecular entity
+
+[Term]
+id: CHEBI:33675
+name: p-block molecular entity
+is_a: CHEBI:33579 ! main group molecular entity
+
+[Term]
+id: CHEBI:33692
+name: hydrides
+is_a: CHEBI:33608 ! hydrogen molecular entity
+is_a: CHEBI:37577 ! heteroatomic molecular entity
+
+[Term]
+id: CHEBI:33694
+name: biomacromolecule
+is_a: CHEBI:33839 ! macromolecule
+is_a: CHEBI:50860 ! organic molecular entity
+
+[Term]
+id: CHEBI:33695
+name: information biomacromolecule
+is_a: CHEBI:33694 ! biomacromolecule
+
+[Term]
+id: CHEBI:33702
+name: polyatomic cation
+is_a: CHEBI:36358 ! polyatomic ion
+is_a: CHEBI:36916 ! cation
+
+[Term]
+id: CHEBI:33832
+name: organic cyclic compound
+is_a: CHEBI:33595 ! cyclic compound
+is_a: CHEBI:72695 ! organic molecule
+
+[Term]
+id: CHEBI:33833
+name: heteroarene
+is_a: CHEBI:24532 ! organic heterocyclic compound
+is_a: CHEBI:33659 ! organic aromatic compound
+
+[Term]
+id: CHEBI:33837
+name: conjugated protein
+is_a: CHEBI:36080 ! protein
+
+[Term]
+id: CHEBI:33839
+name: macromolecule
+is_a: CHEBI:36357 ! polyatomic entity
+
+[Term]
+id: CHEBI:35156
+name: calcium salt
+is_a: CHEBI:22985 ! calcium molecular entity
+is_a: CHEBI:36364 ! alkaline earth salt
+
+[Term]
+id: CHEBI:35186
+name: terpene
+is_a: CHEBI:24632 ! hydrocarbon
+is_a: CHEBI:24913 ! isoprenoid
+
+[Term]
+id: CHEBI:35191
+name: triterpene
+is_a: CHEBI:35186 ! terpene
+
+[Term]
+id: CHEBI:35267
+name: quaternary ammonium ion
+is_a: CHEBI:35274 ! ammonium ion
+
+[Term]
+id: CHEBI:35274
+name: ammonium ion
+is_a: CHEBI:33702 ! polyatomic cation
+is_a: CHEBI:51143 ! nitrogen molecular entity
+
+[Term]
+id: CHEBI:35281
+name: onium betaine
+is_a: CHEBI:27369 ! zwitterion
+
+[Term]
+id: CHEBI:35284
+name: ammonium betaine
+is_a: CHEBI:26469 ! quaternary nitrogen compound
+is_a: CHEBI:35281 ! onium betaine
+
+[Term]
+id: CHEBI:35341
+name: steroid
+is_a: CHEBI:18059 ! lipid
+is_a: CHEBI:51958 ! organic polycyclic compound
+
+[Term]
+id: CHEBI:35352
+name: organonitrogen compound
+is_a: CHEBI:33285 ! heteroorganic entity
+is_a: CHEBI:51143 ! nitrogen molecular entity
+
+[Term]
+id: CHEBI:35479
+name: alkali metal salt
+is_a: CHEBI:24866 ! salt
+is_a: CHEBI:33296 ! alkali metal molecular entity
+
+[Term]
+id: CHEBI:35507
+name: natural product fundamental parent
+is_a: CHEBI:33245 ! organic fundamental parent
+
+[Term]
+id: CHEBI:35605
+name: carbon oxoacid
+is_a: CHEBI:24833 ! oxoacid
+is_a: CHEBI:36963 ! organooxygen compound
+
+[Term]
+id: CHEBI:35692
+name: dicarboxylic acid
+is_a: CHEBI:33575 ! carboxylic acid
+
+[Term]
+id: CHEBI:35701
+name: ester
+is_a: CHEBI:36963 ! organooxygen compound
+
+[Term]
+id: CHEBI:35722
+name: sulfated glycosaminoglycan
+is_a: CHEBI:18085 ! glycosaminoglycan
+is_a: CHEBI:35724 ! carbohydrate sulfate
+
+[Term]
+id: CHEBI:35724
+name: carbohydrate sulfate
+is_a: CHEBI:25704 ! organic sulfate
+is_a: CHEBI:26819 ! sulfuric ester
+is_a: CHEBI:63299 ! carbohydrate derivative
+
+[Term]
+id: CHEBI:35740
+name: liposaccharide
+is_a: CHEBI:18059 ! lipid
+is_a: CHEBI:63299 ! carbohydrate derivative
+
+[Term]
+id: CHEBI:35786
+name: phosphosphingolipid
+is_a: CHEBI:16247 ! phospholipid
+is_a: CHEBI:26739 ! sphingolipid
+
+[Term]
+id: CHEBI:35794
+name: tetrapyrrole fundamental parent
+is_a: CHEBI:26932 ! tetrapyrrole
+is_a: CHEBI:35507 ! natural product fundamental parent
+
+[Term]
+id: CHEBI:36078
+name: cholanoid
+is_a: CHEBI:35341 ! steroid
+
+[Term]
+id: CHEBI:36080
+name: protein
+is_a: CHEBI:33695 ! information biomacromolecule
+
+[Term]
+id: CHEBI:36277
+name: bile acid salt
+is_a: CHEBI:24868 ! organic salt
+is_a: CHEBI:36078 ! cholanoid
+
+[Term]
+id: CHEBI:36309
+name: cyclic tetrapyrrole
+is_a: CHEBI:26932 ! tetrapyrrole
+is_a: CHEBI:47882 ! cyclic polypyrrole
+
+[Term]
+id: CHEBI:36357
+name: polyatomic entity
+is_a: CHEBI:23367 ! molecular entity
+
+[Term]
+id: CHEBI:36358
+name: polyatomic ion
+is_a: CHEBI:24870 ! ion
+is_a: CHEBI:36357 ! polyatomic entity
+
+[Term]
+id: CHEBI:36359
+name: phosphorus oxoacid derivative
+is_a: CHEBI:33241 ! oxoacid derivative
+is_a: CHEBI:36360 ! phosphorus oxoacids and derivatives
+
+[Term]
+id: CHEBI:36360
+name: phosphorus oxoacids and derivatives
+is_a: CHEBI:26082 ! phosphorus molecular entity
+
+[Term]
+id: CHEBI:36364
+name: alkaline earth salt
+is_a: CHEBI:24866 ! salt
+is_a: CHEBI:33299 ! alkaline earth molecular entity
+
+[Term]
+id: CHEBI:36498
+name: galactosylceramide
+is_a: CHEBI:23079 ! cerebroside
+is_a: CHEBI:5254 ! galactolipid
+is_a: CHEBI:62941 ! glycosylceramide
+
+[Term]
+id: CHEBI:36586
+name: carbonyl compound
+is_a: CHEBI:36587 ! organic oxo compound
+is_a: CHEBI:36963 ! organooxygen compound
+
+[Term]
+id: CHEBI:36587
+name: organic oxo compound
+is_a: CHEBI:72695 ! organic molecule
+
+[Term]
+id: CHEBI:36700
+name: phosphocholines
+is_a: CHEBI:23213 ! choline ester
+is_a: CHEBI:23217 ! cholines
+is_a: CHEBI:25703 ! organic phosphate
+is_a: CHEBI:37734 ! phosphoric ester
+
+[Term]
+id: CHEBI:36735
+name: biladienes
+is_a: CHEBI:25046 ! linear tetrapyrrole
+
+[Term]
+id: CHEBI:36916
+name: cation
+is_a: CHEBI:24870 ! ion
+
+[Term]
+id: CHEBI:36962
+name: organochalcogen compound
+is_a: CHEBI:33285 ! heteroorganic entity
+is_a: CHEBI:33304 ! chalcogen molecular entity
+
+[Term]
+id: CHEBI:36963
+name: organooxygen compound
+is_a: CHEBI:25806 ! oxygen molecular entity
+is_a: CHEBI:36962 ! organochalcogen compound
+
+[Term]
+id: CHEBI:37163
+name: glucan
+is_a: CHEBI:37164 ! homopolysaccharide
+
+[Term]
+id: CHEBI:37164
+name: homopolysaccharide
+is_a: CHEBI:18154 ! polysaccharide
+
+[Term]
+id: CHEBI:37175
+name: organic hydride
+is_a: CHEBI:33692 ! hydrides
+
+[Term]
+id: CHEBI:37395
+name: mucopolysaccharide
+is_a: CHEBI:18085 ! glycosaminoglycan
+
+[Term]
+id: CHEBI:37397
+name: chondroitin sulfate
+is_a: CHEBI:35722 ! sulfated glycosaminoglycan
+is_a: CHEBI:37395 ! mucopolysaccharide
+
+[Term]
+id: CHEBI:37577
+name: heteroatomic molecular entity
+is_a: CHEBI:36357 ! polyatomic entity
+
+[Term]
+id: CHEBI:37622
+name: carboxamide
+is_a: CHEBI:33256 ! primary amide
+is_a: CHEBI:35352 ! organonitrogen compound
+is_a: CHEBI:36963 ! organooxygen compound
+
+[Term]
+id: CHEBI:37734
+name: phosphoric ester
+is_a: CHEBI:26079 ! phosphoric acid derivative
+is_a: CHEBI:35701 ! ester
+
+[Term]
+id: CHEBI:37826
+name: sulfuric acid derivative
+is_a: CHEBI:33424 ! sulfur oxoacid derivative
+
+[Term]
+id: CHEBI:38077
+name: polypyrrole
+is_a: CHEBI:38101 ! organonitrogen heterocyclic compound
+
+[Term]
+id: CHEBI:38101
+name: organonitrogen heterocyclic compound
+is_a: CHEBI:24532 ! organic heterocyclic compound
+is_a: CHEBI:35352 ! organonitrogen compound
+
+[Term]
+id: CHEBI:38700
+name: organic sodium salt
+is_a: CHEBI:24868 ! organic salt
+is_a: CHEBI:26714 ! sodium salt
+
+[Term]
+id: CHEBI:39022
+name: inclusion compound
+is_a: CHEBI:50967 ! non-covalently-bound molecular entity
+
+[Term]
+id: CHEBI:39024
+name: clathrate compound
+is_a: CHEBI:39022 ! inclusion compound
+
+[Term]
+id: CHEBI:46662
+name: mineral
+is_a: CHEBI:59999 ! chemical substance
+
+[Term]
+id: CHEBI:46721
+name: carbonate salt
+is_a: CHEBI:23016 ! carbonates
+
+[Term]
+id: CHEBI:46723
+name: phosphate mineral
+is_a: CHEBI:46662 ! mineral
+
+[Term]
+id: CHEBI:47882
+name: cyclic polypyrrole
+is_a: CHEBI:38077 ! polypyrrole
+
+[Term]
+id: CHEBI:50860
+name: organic molecular entity
+is_a: CHEBI:33582 ! carbon group molecular entity
+
+[Term]
+id: CHEBI:50967
+name: non-covalently-bound molecular entity
+is_a: CHEBI:36357 ! polyatomic entity
+
+[Term]
+id: CHEBI:51143
+name: nitrogen molecular entity
+is_a: CHEBI:33302 ! pnictogen molecular entity
+
+[Term]
+id: CHEBI:51151
+name: dipolar compound
+is_a: CHEBI:72695 ! organic molecule
+
+[Term]
+id: CHEBI:51958
+name: organic polycyclic compound
+is_a: CHEBI:33635 ! polycyclic compound
+is_a: CHEBI:33832 ! organic cyclic compound
+
+[Term]
+id: CHEBI:52254
+name: apatite
+is_a: CHEBI:46723 ! phosphate mineral
+
+[Term]
+id: CHEBI:52255
+name: hydroxylapatite
+is_a: CHEBI:52254 ! apatite
+
+[Term]
+id: CHEBI:5254
+name: galactolipid
+is_a: CHEBI:33563 ! glycolipid
+
+[Term]
+id: CHEBI:5686
+name: heterocyclic compound
+is_a: CHEBI:33595 ! cyclic compound
+
+[Term]
+id: CHEBI:59999
+name: chemical substance
+is_a: CHEBI:24431 ! chemical entity
+
+[Term]
+id: CHEBI:60924
+name: keratan sulfate
+is_a: CHEBI:35722 ! sulfated glycosaminoglycan
+is_a: CHEBI:37395 ! mucopolysaccharide
+
+[Term]
+id: CHEBI:60926
+name: amino monosaccharide
+is_a: CHEBI:28963 ! amino sugar
+
+[Term]
+id: CHEBI:62941
+name: glycosylceramide
+is_a: CHEBI:17761 ! ceramide
+is_a: CHEBI:24402 ! glycosphingolipid
+
+[Term]
+id: CHEBI:63299
+name: carbohydrate derivative
+is_a: CHEBI:78616 ! carbohydrates and carbohydrate derivatives
+
+[Term]
+id: CHEBI:64583
+name: sphingomyelin
+is_a: CHEBI:35284 ! ammonium betaine
+is_a: CHEBI:35786 ! phosphosphingolipid
+is_a: CHEBI:36700 ! phosphocholines
+is_a: CHEBI:37622 ! carboxamide
+
+[Term]
+id: CHEBI:64708
+name: one-carbon compound
+is_a: CHEBI:50860 ! organic molecular entity
+
+[Term]
+id: CHEBI:64709
+name: organic acid
+is_a: CHEBI:50860 ! organic molecular entity
+
+[Term]
+id: CHEBI:6495
+name: lipoprotein
+is_a: CHEBI:33837 ! conjugated protein
+is_a: CHEBI:39024 ! clathrate compound
+
+[Term]
+id: CHEBI:65212
+name: polysaccharide derivative
+is_a: CHEBI:33694 ! biomacromolecule
+is_a: CHEBI:63299 ! carbohydrate derivative
+
+[Term]
+id: CHEBI:72695
+name: organic molecule
+is_a: CHEBI:25367 ! molecule
+is_a: CHEBI:50860 ! organic molecular entity
+
+[Term]
+id: CHEBI:78616
+name: carbohydrates and carbohydrate derivatives
+is_a: CHEBI:36963 ! organooxygen compound
+
+[Term]
+id: CHEBI:8337
+name: porphyrin
+is_a: CHEBI:26214 ! porphyrins
+is_a: CHEBI:35794 ! tetrapyrrole fundamental parent
+
+[Term]
+id: CL:0000000
+name: cell
+namespace: cell
+def: "A material entity of anatomical origin (part of or deriving from an organism) that has as its parts a maximally connected cell compartment surrounded by a plasma membrane." [CARO:mah]
+comment: The definition of cell is intended to represent all cells, and thus a cell is defined as a material entity and not an anatomical structure, which implies that it is part of an organism (or the entirety of one).
+subset: ubprop:upper_level
+xref: CALOHA:TS-2035
+xref: FMA:68646
+xref: GO:0005623
+xref: KUPO:0000002
+xref: VHOG:0001533
+xref: WBbt:0004017
+xref: XAO:0003012
+is_a: GO:0005575 ! cellular_component
+
+[Term]
+id: CL:0000001
+name: primary cultured cell
+namespace: cell
+def: "A cultured cell that is freshly isolated from a organismal source, or derives in culture from such a cell prior to the culture being passaged." [ReO:mhb]
+comment: Covers cells actively being cultured or stored in a quiescent state for future use.
+synonym: "primary cell culture cell" EXACT []
+synonym: "primary cell line cell" RELATED []
+synonym: "unpassaged cultured cell" EXACT []
+xref: BTO:0002290
+is_a: CL:0000010 ! cultured cell
+
+[Term]
+id: CL:0000002
+name: obsolete immortal cell line cell
+namespace: cell
+def: "OBSOLETE: A cell line cell that is expected to be capable of an unlimited number of divisions, and is thus able to support indefinite growth/propagation in vitro as part of a immortal cell line." [ReO:mhb]
+comment: Obsoleted in July 2013 and replaced by the CLO 'immortal cell line cell' class, as a result of CLO-OBI-CL alignment efforts.\n\nCovers cells actively being cultured or stored in a quiescent state for future use.
+synonym: "continuous cell line cell" EXACT []
+synonym: "permanent cell line cell" EXACT []
+is_obsolete: true
+replaced_by: CLO:0000019
+
+[Term]
+id: CL:0000003
+name: native cell
+namespace: cell
+def: "A cell that is found in a natural setting, which includes multicellular organism cells 'in vivo' (i.e. part of an organism), and unicellular organisms 'in environment' (i.e. part of a natural environment)." [CARO:mah]
+comment: To accommodate unicellular organisms better, 'cell in vivo' has been re-labeled 'native cell' to better represent its intended meaning - that is, that it is a cell in the context of a multicellular organism or in a natural environment. 'Native' is intended to contrast with 'in vitro', which refers to cells or other biological entities that have been intentionally placed in a controlled, non-natural setting for the purpose of study or manipulation. (MAH 1.12.12).
+subset: ubprop:upper_level
+synonym: "cell in vivo" NARROW []
+xref: CARO:0000013
+is_a: CL:0000000 ! cell
+is_a: GO:0005623 ! cell
+
+[Term]
+id: CL:0000004
+name: obsolete cell by organism
+namespace: cell
+def: "OBSOLETE: A classification of cells by the organisms within which they are contained." [FB:ma]
+comment: This term was made obsolete because there is no difference in meaning between it and 'cell', as any cell can be classified by its species. If you have used this term in annotation, please replace it with cell (CL:0000000), native cell (CL:0000003), or cell in vitro (CL:0001034) as appropriate.
+is_obsolete: true
+consider: CL:0000000
+consider: CL:0000003
+consider: CL:0001034
+
+[Term]
+id: CL:0000005
+name: fibroblast neural crest derived
+namespace: cell
+is_a: CL:0000057 ! fibroblast
+relationship: develops_from CL:0000008 ! migratory cranial neural crest cell
+relationship: develops_from CL:0000333 ! migratory neural crest cell
+
+[Term]
+id: CL:0000006
+name: neuronal receptor cell
+namespace: cell
+synonym: "neuronal receptor cell (sensu Animalia)" EXACT []
+is_a: CL:0000101 ! sensory neuron
+is_a: CL:0000197 ! receptor cell
+relationship: capable_of GO:0050906 ! detection of stimulus involved in sensory perception
+
+[Term]
+id: CL:0000007
+name: early embryonic cell
+namespace: cell
+def: "A cell found in the embryo before the formation of all the gem layers is complete." [GOC:tfm]
+is_a: CL:0002321 ! embryonic cell
+
+[Term]
+id: CL:0000008
+name: migratory cranial neural crest cell
+namespace: cell
+is_a: CL:0000333 ! migratory neural crest cell
+
+[Term]
+id: CL:0000009
+name: obsolete fusiform initial
+namespace: cell
+alt_id: CL:0000274
+def: "Obsolete. Use PO:0000079 from Plant Ontology instead. An elongated cell with approximately wedge-shaped ends, found in the vascular cambium, which gives rise to the elements of the axial system in the secondary vascular tissues." [ISBN:0471245208]
+comment: replaced_by: PO:0000079
+synonym: "xylem initial" RELATED []
+synonym: "xylem mother cell" RELATED []
+is_obsolete: true
+
+[Term]
+id: CL:0000010
+name: cultured cell
+namespace: cell
+def: "A cell in vitro that is or has been maintained or propagated as part of a cell culture." [ReO:mhb]
+comment: Note that this class was re-labeled to 'cultured cell' instead of 'cell line cell', as it intent was clarified to cover any cultured cells of multicellular and unicellular organisms. This includes cells actively being cultured, or cells that have been cultured but are stored in a quiescent state for future use. In having been cultured, cells must establish homeostasis and often replicate in a foreign environment. Accomodation of this stress initiates a selection of cells fit for such challenges, wherein necessary adaptive biochemical and.or genetic changes can occur. These changes can set them apart from the in vivo cells from which they derive, and such changes will typically accumulate and change over increasing time in culture.
+is_a: CL:0000578 ! experimentally modified cell in vitro
+
+[Term]
+id: CL:0000011
+name: migratory trunk neural crest cell
+namespace: cell
+is_a: CL:0000333 ! migratory neural crest cell
+
+[Term]
+id: CL:0000012
+name: obsolete cell by class
+namespace: cell
+comment: This term was made obsolete because there is no difference in meaning between it and 'cell', as any cell can be classified. If you have used this term in annotation, please replace it with cell (CL:0000000), native cell (CL:0000003), or cell in vitro (CL:0001034) as appropriate.
+is_obsolete: true
+consider: CL:0000000
+consider: CL:0000003
+consider: CL:0001034
+
+[Term]
+id: CL:0000013
+name: obsolete dentine secreting cell
+namespace: cell
+is_obsolete: true
+consider: CL:0000140
+
+[Term]
+id: CL:0000014
+name: germ line stem cell
+namespace: cell
+synonym: "germline stem cell" EXACT []
+is_a: CL:0000034 {is_inferred="true"} ! stem cell
+is_a: CL:0000039 {is_inferred="true"} ! germ line cell
+relationship: capable_of GO:0017145 ! stem cell division
+
+[Term]
+id: CL:0000015
+name: male germ cell
+namespace: cell
+xref: FMA:72290
+xref: MA:0002765
+xref: ncithesaurus:Spermatogenic_Cell
+xref: VHOG:0001531
+is_a: CL:0000586 {is_inferred="true"} ! germ cell
+relationship: capable_of GO:0007283 ! spermatogenesis
+
+[Term]
+id: CL:0000016
+name: male germ line stem cell
+namespace: cell
+is_a: CL:0000014 ! germ line stem cell
+is_a: CL:0000015 ! male germ cell
+
+[Term]
+id: CL:0000017
+name: spermatocyte
+namespace: cell
+def: "A male germ cell that develops from spermatogonia. The euploid primary spermatocytes undergo meiosis and give rise to the haploid secondary spermatocytes which in turn give rise to spermatids." [GOC:tfm, MESH:A05.360.490.890.880]
+xref: BTO:0001275
+xref: CALOHA:TS-0951
+xref: EMAPA:31484
+xref: FBbt:00004936
+xref: FMA:84049
+xref: WBbt:0006799
+is_a: CL:0000015 {is_inferred="true"} ! male germ cell
+relationship: develops_from CL:0000020 ! spermatogonium
+relationship: existence_starts_during_or_after MmusDv:0000036 {gci_relation="part_of", gci_filler="NCBITaxon:10090"} ! Theiler stage 27
+
+[Term]
+id: CL:0000018
+name: spermatid
+namespace: cell
+def: "A male germ cell that develops from the haploid secondary spermatocytes. Without further division, spermatids undergo structural changes and give rise to spermatozoa." [MESH:A05.360.490.890.860]
+synonym: "nematoblast" EXACT []
+xref: BTO:0001274
+xref: CALOHA:TS-0950
+xref: EMAPA:31486
+xref: FBbt:00004942
+xref: FMA:72294
+xref: WBbt:0006800
+is_a: CL:0000015 {is_inferred="true"} ! male germ cell
+is_a: CL:0000413 ! haploid cell
+relationship: develops_from CL:0000657 ! secondary spermatocyte
+
+[Term]
+id: CL:0000019
+name: sperm
+namespace: cell
+def: "A mature male germ cell that develops from a spermatid." [GOC:tfm, MESH:A05.360.490.890]
+synonym: "sperm cell" EXACT []
+synonym: "spermatozoid" EXACT []
+synonym: "spermatozoon" EXACT []
+xref: BTO:0001277
+xref: BTO:0002046
+xref: CALOHA:TS-0949
+xref: FBbt:00004954
+xref: FMA:67338
+xref: WBbt:0006798
+is_a: CL:0000064 ! ciliated cell
+is_a: CL:0000219 ! motile cell
+is_a: CL:0000408 {is_inferred="true"} ! male gamete
+relationship: capable_of GO:0030317 ! sperm motility
+relationship: capable_of GO:0048240 ! sperm capacitation
+relationship: develops_from CL:0000018 ! spermatid
+
+[Term]
+id: CL:0000020
+name: spermatogonium
+namespace: cell
+def: "An euploid male germ cell of an early stage of spermatogenesis." [MESH:A05.360.490.890.900]
+xref: BTO:0000958
+xref: CALOHA:TS-2193
+xref: EMAPA:31482
+xref: FBbt:00004935
+xref: FMA:72291
+is_a: CL:0000015 ! male germ cell
+relationship: existence_starts_during_or_after MmusDv:0000036 {gci_relation="part_of", gci_filler="NCBITaxon:10090"} ! Theiler stage 27
+
+[Term]
+id: CL:0000021
+name: female germ cell
+namespace: cell
+def: "Female germ cell is a germ cell that supports female gamete production." [GOC:tfm, PMID:11023867, PMID:20454446]
+xref: MA:0000388
+xref: ncithesaurus:Egg
+xref: VHOG:0001530
+is_a: CL:0000586 {is_inferred="true"} ! germ cell
+relationship: capable_of GO:0048477 ! oogenesis
+
+[Term]
+id: CL:0000022
+name: female germ line stem cell
+namespace: cell
+is_a: CL:0000014 {is_inferred="true"} ! germ line stem cell
+is_a: CL:0000021 {is_inferred="true"} ! female germ cell
+relationship: capable_of GO:0017145 ! stem cell division
+
+[Term]
+id: CL:0000023
+name: oocyte
+namespace: cell
+def: "A female germ cell that has entered meiosis." [GOC:tfm, ISBN:0721662544]
+synonym: "oogonium" RELATED []
+xref: BTO:0000964
+xref: CALOHA:TS-0711
+xref: FBbt:00004886
+xref: FMA:18644
+xref: WBbt:0006797
+is_a: CL:0000021 {is_inferred="true"} ! female germ cell
+
+[Term]
+id: CL:0000024
+name: oogonial cell
+namespace: cell
+def: "An undifferentiated germ cell that proliferates rapidly and gives rise to oocytes." [GOC:tfm, ISBN:0721662544]
+xref: FMA:83673
+is_a: CL:0000021 {is_inferred="true"} ! female germ cell
+relationship: develops_from CL:0000670 ! primordial germ cell
+
+[Term]
+id: CL:0000025
+name: egg cell
+namespace: cell
+def: "A female gamete where meiosis has progressed to metaphase II and is able to participate in fertilization." [GOC:tfm, ISBN:0721662544]
+synonym: "mature oocyte" EXACT []
+synonym: "ovum" EXACT []
+xref: BTO:0000369
+xref: BTO:0003801
+xref: CALOHA:TS-2191
+xref: FBbt:00057012
+xref: FMA:67343
+xref: MA:0000388
+is_a: CL:0000675 {is_inferred="true"} ! female gamete
+relationship: develops_from CL:0000023 ! oocyte
+
+[Term]
+id: CL:0000026
+name: invertebrate nurse cell
+namespace: cell
+def: "A germline cell that contributes to the development of the oocyte by transferring cytoplasm directly to oocyte." [GOC:tfm, PMID:15848391]
+synonym: "nurse cell" RELATED []
+xref: BTO:0000953
+xref: FBbt:00004878
+is_a: CL:0000039 ! germ line cell
+is_a: CL:0000412 ! polyploid cell
+relationship: develops_from CL:0000722 ! cystoblast
+
+[Term]
+id: CL:0000027
+name: smooth muscle cell neural crest derived
+namespace: cell
+is_a: CL:0000192 {is_inferred="true"} ! smooth muscle cell
+relationship: develops_from CL:0000008 ! migratory cranial neural crest cell
+relationship: develops_from CL:0000333 ! migratory neural crest cell
+
+[Term]
+id: CL:0000028
+name: CNS neuron (sensu Nematoda and Protostomia)
+namespace: cell
+is_a: CL:2000029 ! central nervous system neuron
+relationship: develops_from CL:0000338 ! neuroblast (sensu Nematoda and Protostomia)
+relationship: part_of UBERON:0001017 ! central nervous system
+
+[Term]
+id: CL:0000029
+name: neuron neural crest derived
+namespace: cell
+is_a: CL:0000540 {is_inferred="true"} ! neuron
+relationship: develops_from CL:0000333 ! migratory neural crest cell
+relationship: develops_from CL:0002676 ! neural crest derived neuroblast
+
+[Term]
+id: CL:0000030
+name: glioblast
+namespace: cell
+xref: FBbt:00005145
+is_a: CL:0000055 ! non-terminally differentiated cell
+relationship: develops_from CL:0000133 ! neurectodermal cell
+
+[Term]
+id: CL:0000031
+name: neuroblast
+namespace: cell
+def: "A cell that will develop into a neuron often after a migration phase." [http://en.wikipedia.org/wiki/Neuroblast] {editor="GOC:NV"}
+xref: BTO:0000930
+xref: FBbt:00005146
+xref: FMA:70563
+is_a: CL:0000047 ! neuronal stem cell
+is_a: CL:0000055 ! non-terminally differentiated cell
+
+[Term]
+id: CL:0000032
+name: neuroplacodal cell
+namespace: cell
+def: "A cell of a platelike structure, especially a thickened plate of ectoderm in the early embryo, from which a sense organ develops." [GOC:tfm, ISBN:0618947256]
+synonym: "neural placode cell" EXACT []
+is_a: BFO:0000004
+is_a: CL:0002321 ! embryonic cell
+relationship: develops_from CL:0000114 ! surface ectodermal cell
+
+[Term]
+id: CL:0000033
+name: apocrine cell
+namespace: cell
+def: "An apocrine cell is a secretory cell characterized loss of part of the cytoplasm during the process of secretion - secretions are budded off through the plasma membrane producing membrane bound vesicles containing the secreted substance." [GOC:tfm, ISBN:0721662544]
+is_a: CL:0000151 ! secretory cell
+
+[Term]
+id: CL:0000034
+name: stem cell
+namespace: cell
+def: "A relatively undifferentiated cell that retains the ability to divide and proliferate throughout life to provide progenitor cells that can differentiate into specialized cells." [GOC:tfm, MESH:A11.872]
+xref: CALOHA:TS-2086
+xref: FMA:63368
+is_a: CL:0011115 ! precursor cell
+relationship: capable_of GO:0017145 ! stem cell division
+relationship: capable_of GO:0030154 ! cell differentiation
+
+[Term]
+id: CL:0000035
+name: single fate stem cell
+namespace: cell
+def: "A stem cell that self-renews as well as give rise to a single mature cell type." [GOC:tfm]
+synonym: "unipotent stem cell" EXACT []
+synonym: "unipotential stem cell" EXACT []
+xref: FMA:70569
+is_a: CL:0000723 ! somatic stem cell
+relationship: capable_of GO:0017145 ! stem cell division
+
+[Term]
+id: CL:0000036
+name: epithelial fate stem cell
+namespace: cell
+is_a: CL:0000035 ! single fate stem cell
+
+[Term]
+id: CL:0000037
+name: hematopoietic stem cell
+namespace: cell
+def: "A stem cell from which all cells of the lymphoid and myeloid lineages develop, including blood cells and cells of the immune system. Hematopoietic stem cells lack cell markers of effector cells (lin-negative). Lin-negative is defined by lacking one or more of the following cell surface markers: CD2, CD3 epsilon, CD4, CD5 ,CD8 alpha chain, CD11b, CD14, CD19, CD20, CD56, ly6G, ter119." [GOC:add, GOC:dsd, GOC:tfm, http://en.wikipedia.org/wiki/Hematopoietic_stem_cell, PMID:19022770]
+comment: Markers differ between species, and two sets of markers have been described for mice. HSCs are reportedly CD34-positive, CD45-positive, CD48-negative, CD150-positive, CD133-positive, and CD244-negative.
+synonym: "blood forming stem cell" EXACT []
+synonym: "colony forming unit hematopoietic" RELATED []
+synonym: "hemopoietic stem cell" EXACT []
+synonym: "HSC" EXACT []
+xref: BTO:0000725
+xref: CALOHA:TS-0448
+xref: FMA:70337
+xref: FMA:86475
+xref: VHOG:0001485
+is_a: CL:0000723 ! somatic stem cell
+is_a: CL:0008001 ! hematopoietic precursor cell
+relationship: develops_from CL:0000566 ! angioblastic mesenchymal cell
+
+[Term]
+id: CL:0000038
+name: erythroid progenitor cell
+namespace: cell
+def: "A progenitor cell committed to the erythroid lineage." [GOC:add, ISBN:0721601464]
+synonym: "BFU-E" RELATED []
+synonym: "blast forming unit erythroid" RELATED []
+synonym: "burst forming unit erythroid" RELATED []
+synonym: "CFU-E" RELATED []
+synonym: "colony forming unit erythroid" RELATED []
+synonym: "erythroid stem cell" RELATED []
+xref: BTO:0004911
+is_a: CL:0000764 ! erythroid lineage cell
+is_a: CL:0000839 {is_inferred="true"} ! myeloid lineage restricted progenitor cell
+relationship: develops_from CL:0000050 ! megakaryocyte-erythroid progenitor cell
+
+[Term]
+id: CL:0000039
+name: germ line cell
+namespace: cell
+def: "A cell that is within the developmental lineage of gametes and is able to pass along its genetic material to offspring." [GOC:tfm, ISBN:0721662544]
+comment: Originally this term had some plant germ line cell children.
+subset: ubprop:upper_level
+is_a: BFO:0000004
+is_a: BFO:0000040 ! material entity
+is_a: CL:0000548 ! animal cell
+relationship: capable_of GO:0022414 ! reproductive process
+
+[Term]
+id: CL:0000040
+name: monoblast
+namespace: cell
+def: "A myeloid progenitor cell committed to the monocyte lineage. This cell is CD11b-positive, has basophilic cytoplasm, euchromatin, and the presence of a nucleolus." [GOC:add, http://en.wikipedia.org/wiki/Monoblast, http://www.copewithcytokines.de, PMID:1104740]
+comment: Morphology: mononuclear cell, diameter 12-20 _M, non-granular, N/C ratio 3/1 - 4/1; markers: CD11b (shared with many other myeloid cells); location: Adult: bone marrow; fetal: liver, Yolk Sac; role or process: hematopoiesis, monocyte development; lineage: hematopoietic, myeloid.
+synonym: "CFU-M" RELATED []
+synonym: "colony forming unit macrophage" RELATED []
+synonym: "colony forming unit monocyte" RELATED []
+synonym: "monocyte stem cell" RELATED []
+xref: CALOHA:TS-1195
+xref: FMA:83553
+is_a: CL:0000763 ! myeloid cell
+is_a: CL:0002194 {is_inferred="true"} ! monopoietic cell
+relationship: develops_from CL:0002009 ! macrophage dendritic cell progenitor
+
+[Term]
+id: CL:0000041
+name: mature eosinophil
+namespace: cell
+def: "A fully differentiated eosinophil, a granular leukocyte with a nucleus that usually has two lobes connected by one or more slender threads, and cytoplasm containing coarse, round granules that are uniform in size and which can be stained by the dye eosin. Cells are also differentiated from other granulocytes by a small nuclear-to-cytoplasm ratio (1:3). This cell type is CD49d-positive." [GOC:add, GOC:dsd, GOC:tfm, http://www.cap.org, ISBN:0721601464]
+comment: Eosinophils are CD125-positive (IL-5R), GM-CSFR-positive, IL-3R-positive, VLA4-positive. They can also express MHC Class I & II, CD4, CD9, CD11a, CD11b, CD11c, CD13, CD15, CD16, CD17, CD18, CD24, CD25,CD28, CD29, CD32, CD33, CD35, CD37, CD39, CD43, CD44, CD45, CD45RB, CD45RO, CD46, CD47, CD48, CD49d, CD49f, CD50, CD52, CD53, CD54, CD55, CD58, CD59, CD62L, CD63, CD65, CD66, CD69, CD71, CD76, CD80, CD81, CD82, CD86, CD87, CD88, CD89, CD92, CD95, CD97, CD98, CD99, CD100, CD101, CD116, CD117, CD119, CD120, CD123, CD124, CD125, CD131, CD137, CD139, CD148, CD149, CD151, CD153, CD156, CD162, CD161, CD162, CD165, CD174, CD182, CD183, CD191, CD192, CD193, CD196, CD213, IL9R, ad integrin, beta-7 integrin, FceRI, IL13Ra1, TGFbR, PAFR, LTB4R, C3aR, CystLT1R, CystLT2R, fMLPR, CRTH2 (PGD2 receptor), histamine 4R, IDO, KYN, PAR-2, Siglec-8, Siglec-10, LIR1, LIR2, LIR3, LIR7, TLR7, TLR8, and VLA-4. Eosinophils can also secrete CXCL1, eotaxin-1, GM-CSF, IL-2, IL-3, IL-4, IL-5, IL-6, IL-8, IL-10, IL-12, IL-13, IL-16, IL-18, IFN-gamma, LTC4, MIP-1alpha, NGF, PAF, RANTES, substance P, TGF-alpha, TGF-beta, TNF-alpha, and VIP.
+synonym: "mature eosinocyte" EXACT []
+synonym: "mature eosinophil leucocyte" EXACT []
+synonym: "mature eosinophil leukocyte" EXACT []
+synonym: "polymorphonuclear leucocyte" BROAD []
+synonym: "polymorphonuclear leukocyte" BROAD []
+is_a: CL:0000771 {is_inferred="true"} ! eosinophil
+is_a: CL:0002242 ! nucleate cell
+relationship: develops_from CL:0000774 ! band form eosinophil
+
+[Term]
+id: CL:0000042
+name: neutrophilic myeloblast
+namespace: cell
+def: "A myeloblast committed to the neutrophil lineage. This cell type is GATA-1 positive, C/EBPa-positive, AML-1-positive, c-myb-positive and has low expression of PU.1 transcription factor." [GOC:add, ISBN:0721601464, PMID:12560239, PMID:15514007]
+comment: These cells are CD11b-negative, CD15-negative, CD16-negative, CD35-negative, CD49d-positive, CD68-positive, lactotransferrin-negative, and fMLP receptor-negative. They are found in the Band 3 fraction.
+synonym: "neutrophilic granuloblast" RELATED []
+is_a: CL:0000834 ! neutrophil progenitor cell
+is_a: CL:0000835 {is_inferred="true"} ! myeloblast
+relationship: develops_from CL:0000834 ! neutrophil progenitor cell
+
+[Term]
+id: CL:0000043
+name: mature basophil
+namespace: cell
+alt_id: CL:0000739
+def: "A fully differentiated basophil, a granular leukocyte with an irregularly shaped, pale-staining nucleus that is partially constricted into two lobes, and with cytoplasm that contains coarse granules of variable size. Basophils contain vasoactive amines such as histamine and serotonin, which are released on appropriate stimulation." [GOC:add, GOC:dsd, GOC:tfm, http://www.cap.org, ISBN:0721601464, PMID:18466030, PMID:19231594, PMID:20837449]
+comment: Mature basophils are also capable of producing IL-3, IL-5, IL-6, IL-8, IL-13, IL-25, CCL22, tslp, vegf, and LTC4.
+synonym: "mature basophil leucocyte" EXACT []
+synonym: "mature basophil leukocyte" EXACT []
+synonym: "polymorphonuclear leucocyte" BROAD []
+synonym: "polymorphonuclear leukocyte" BROAD []
+xref: BTO:0001026
+xref: CALOHA:TS-0688
+is_a: CL:0000767 {is_inferred="true"} ! basophil
+is_a: CL:0002242 ! nucleate cell
+is_a: CL:0002274 ! histamine secreting cell
+relationship: capable_of GO:0002351 ! serotonin production involved in inflammatory response
+relationship: capable_of GO:0008015 ! blood circulation
+relationship: develops_from CL:0000770 ! band form basophil
+
+[Term]
+id: CL:0000045
+name: obsolete thymus processed stem cell
+namespace: cell
+def: "OBSOLETE (was not defined before being made obsolete)." []
+comment: Consider using term 'pro-T cell ; CL:0000827' or the term 'thymocyte ; CL:0000893' or one of its children instead.
+is_obsolete: true
+
+[Term]
+id: CL:0000046
+name: obsolete bursa processed stem cell
+namespace: cell
+def: "OBSOLETE (was not defined before being made obsolete)." []
+comment: Consider using term 'pro-B cell ; CL:0000826' or the term 'immature B cell ; CL:0000816 or one of its children instead.
+is_obsolete: true
+
+[Term]
+id: CL:0000047
+name: neuronal stem cell
+namespace: cell
+def: "Neural stem cell is characterized as an undifferentiated cell that originates from the neuroectoderm and has the capacity both to perpetually self-renew without differentiating and to generate multiple types of lineage-restricted progenitors." [GOC:tfm, http://en.wikipedia.org/wiki/Neural_stem_cell, MESH:D058953, PMID:15247488]
+synonym: "neural stem cell" EXACT []
+synonym: "NSC" EXACT []
+xref: BTO:0002881
+xref: CALOHA:TS-2360
+xref: FMA:86684
+is_a: CL:0000048 {is_inferred="true"} ! multi fate stem cell
+is_a: CL:0002319 ! neural cell
+relationship: develops_from CL:0000133 ! neurectodermal cell
+relationship: part_of UBERON:0001017 ! central nervous system
+
+[Term]
+id: CL:0000048
+name: multi fate stem cell
+namespace: cell
+def: "A stem cell that can give rise to multiple lineages of cells." [GOC:add]
+synonym: "multi-fate stem cell" EXACT []
+synonym: "multifate stem cell" EXACT []
+synonym: "multipotent cell" EXACT []
+synonym: "multipotent stem cell" EXACT []
+xref: FMA:84789
+is_a: CL:0000034 ! stem cell
+is_a: CL:0002371 ! somatic cell
+relationship: capable_of GO:0017145 ! stem cell division
+
+[Term]
+id: CL:0000049
+name: common myeloid progenitor
+namespace: cell
+def: "A progenitor cell committed to myeloid lineage, including the megakaryocyte and erythroid lineages." [GOC:add, ISBN:0878932437, MESH:D023461]
+comment: This cell type is intended to be compatible with any vertebrate common myeloid progenitor.  For mammalian CMP known to be CD34-positive, please use the term 'common myeloid progenitor, CD34-positive' (CL_0001059).
+synonym: "CFU-GEMM" RELATED [ISBN:0878932437]
+synonym: "CFU-S" RELATED [ISBN:0878932437]
+synonym: "CMP" EXACT [ISBN:0878932437]
+synonym: "colony forming unit granulocyte, erythrocyte, macrophage, and megakaryocyte" RELATED [ISBN:0878932437]
+synonym: "common myeloid precursor" EXACT []
+synonym: "multipotential myeloid stem cell" RELATED [ISBN:0878932437]
+synonym: "myeloid stem cell" RELATED [ISBN:0878932437]
+synonym: "pluripotent stem cell (bone marrow)" RELATED [ISBN:0878932437]
+xref: BTO:0004730
+is_a: CL:0002032 {is_inferred="true"} ! hematopoietic oligopotent progenitor cell
+
+[Term]
+id: CL:0000050
+name: megakaryocyte-erythroid progenitor cell
+namespace: cell
+def: "A progenitor cell committed to the megakaryocyte and erythroid lineages." [GOC:add, GOC:dsd, GOC:tfm, http://en.wikipedia.org/wiki/Megakaryocyte-erythroid_progenitor_cell, MESH:D055015, PMID:16647566]
+comment: MEPs are reportedly CD19-negative, CD34-negative, CD45RA-negative, CD110-positive, CD117-positive, and SCA1-negative and reportedly express the transcription factors GATA-1 and NF-E2.
+synonym: "CFU-EM" EXACT []
+synonym: "CFU-MegE" EXACT []
+synonym: "colony forming unit erythroid megakaryocyte" EXACT []
+synonym: "Meg/E progenitor" EXACT []
+synonym: "megakaryocyte/erythrocyte progenitor" EXACT []
+synonym: "megakaryocyte/erythroid progenitor cell" EXACT []
+synonym: "MEP" EXACT []
+is_a: CL:0000763 ! myeloid cell
+is_a: CL:0002032 {is_inferred="true"} ! hematopoietic oligopotent progenitor cell
+is_a: CL:0011115 ! precursor cell
+relationship: develops_from CL:0000049 ! common myeloid progenitor
+
+[Term]
+id: CL:0000051
+name: common lymphoid progenitor
+namespace: cell
+alt_id: CL:0000044
+def: "A oligopotent progenitor cell committed to the lymphoid lineage." [GOC:add, GOC:dsd, GOC:tfm, PMID:10407577, PMID:16551251]
+comment: CLP are CD7-positive, CD10-positive, CD19-negative, CD34-positive, CD45RA-positive, CD79a-negative, CD127-positive, AA4.1-positive, RAG-negative, Sca-1-low, sIgM-negative, sIgD-negative, TdT-negative, Vpre-B-negative, and pre-BCR-negative. Expression of transcription factors include E2A-positive, EBF-positive, Ikaros-negative, PU.1-negative, and Pax5-negative.
+synonym: "CLP" EXACT []
+synonym: "committed lymphopoietic stem cell" RELATED []
+synonym: "common lymphocyte precursor" EXACT []
+synonym: "common lymphocyte progenitor" EXACT []
+synonym: "common lymphoid precursor" EXACT []
+synonym: "early lymphocyte progenitor" RELATED []
+synonym: "ELP" RELATED []
+synonym: "lymphoid stem cell" RELATED []
+synonym: "lymphopoietic stem cell" RELATED []
+is_a: CL:0002032 {is_inferred="true"} ! hematopoietic oligopotent progenitor cell
+is_a: CL:0011115 ! precursor cell
+relationship: capable_of GO:0030098 ! lymphocyte differentiation
+
+[Term]
+id: CL:0000052
+name: totipotent stem cell
+namespace: cell
+def: "A stem cell from which all cells of the body can form." [GOC:add, GOC:tfm]
+synonym: "totipotential stem cell" EXACT []
+xref: FMA:84790
+is_a: CL:0000723 ! somatic stem cell
+
+[Term]
+id: CL:0000054
+name: bone matrix secreting cell
+namespace: cell
+is_a: CL:0000151 ! secretory cell
+
+[Term]
+id: CL:0000055
+name: non-terminally differentiated cell
+namespace: cell
+def: "A precursor cell with a limited number of potential fates." [SANBI:mhl]
+comment: define using PATO mulit-potent or oligopotent?
+synonym: "blast cell" EXACT []
+xref: BTO:0000125
+xref: FMA:84782
+is_a: CL:0011115 ! precursor cell
+relationship: capable_of GO:0030154 ! cell differentiation
+
+[Term]
+id: CL:0000056
+name: myoblast
+namespace: cell
+def: "A cell that is commited to differentiating into a muscle cell.  Embryonic myoblasts develop from the mesoderm. They undergo proliferation, migrate to their various sites, and then differentiate into the appropriate form of myocytes.  Myoblasts also occur as transient populations of cells in muscles undergoing repair." [GOC:tfm, MESH:A11.635, PMID:21849021]
+xref: BTO:0000222
+xref: CALOHA:TS-0650
+xref: FBbt:00005083
+xref: FMA:70335
+xref: VHOG:0001529
+is_a: CL:0000680 ! muscle precursor cell
+
+[Term]
+id: CL:0000057
+name: fibroblast
+namespace: cell
+def: "A connective tissue cell which secretes an extracellular matrix rich in collagen and other macromolecules. Flattened and irregular in outline with branching processes; appear fusiform or spindle-shaped." [http://en.wikipedia.org/wiki/Fibroblast, ISBN:0517223651, MESH:A11.329.228, MESH:D005347]
+comment: These cells may be vimentin-positive, fibronectin-positive, fsp1-positive, MMP-1-positive, collagen I-positive, collagen III-positive, and alpha-SMA-negative.
+xref: BTO:0000452
+xref: CALOHA:TS-0362
+xref: FMA:63877
+xref: VHOG:0001482
+is_a: BFO:0000004
+is_a: CL:0002320 ! connective tissue cell
+relationship: develops_from CL:0000134 ! mesenchymal stem cell
+
+[Term]
+id: CL:0000058
+name: chondroblast
+namespace: cell
+def: "Skeletogenic cell that is typically non-terminally differentiated, secretes an avascular, GAG rich matrix; is not buried in cartilage tissue matrix, retains the ability to divide, located adjacent to cartilage tissue (including within the perichondrium), and develops from prechondroblast (and thus prechondrogenic) cell." [GO_REF:0000034, GOC:tfm, ISBN:0618947256]
+synonym: "chrondoplast" EXACT []
+xref: BTO:0003607
+xref: FMA:66783
+is_a: CL:0000055 ! non-terminally differentiated cell
+is_a: CL:0002320 ! connective tissue cell
+relationship: develops_from CL:0007009 ! prechondroblast
+
+[Term]
+id: CL:0000059
+name: ameloblast
+namespace: cell
+alt_id: CL:0000053
+alt_id: CL:0000139
+def: "Skeletogenic cell that produces enamel, overlies the odontogenic papilla, and arises from the differentiation of a preameloblast cell." [GO_REF:0000034, GOC:tfm, MESH:A11.436.107]
+comment: non-encoded relationship from VSAO produces VSAO:0000066
+synonym: "amelocyte" EXACT []
+synonym: "enamel secreting cell" EXACT []
+xref: BTO:0001663
+xref: FMA:70576
+is_a: CL:0000146 ! simple columnar epithelial cell
+is_a: CL:0000151 ! secretory cell
+is_a: CL:0002077 ! ecto-epithelial cell
+relationship: develops_from CL:0007000 ! preameloblast
+relationship: part_of UBERON:0005176 ! tooth enamel organ
+
+[Term]
+id: CL:0000060
+name: odontoblast
+namespace: cell
+def: "Skeletogenic cell that secretes dentine matrix, is derived from the odontogenic papilla, and develops from a preodontoblast cell." [GO_REF:0000034, ISBN:0618947256]
+comment: legacy def: One of the cells forming the outer surface of dental pulp that produces tooth dentin.
+xref: BTO:0001769
+xref: CALOHA:TS-0696
+xref: FMA:62999
+is_a: CL:0000055 ! non-terminally differentiated cell
+is_a: CL:0000710 ! neurecto-epithelial cell
+is_a: CL:0002159 ! general ecto-epithelial cell
+relationship: develops_from CL:0007003 ! preodontoblast
+relationship: part_of UBERON:0005176 ! tooth enamel organ
+
+[Term]
+id: CL:0000061
+name: cementoblast
+namespace: cell
+alt_id: CL:0000859
+def: "Skeletogenic cell that produces cementum (a bony substance that covers the root of a tooth), is part of the odontogenic papilla, and develops from a precementoblast cell." [GO_REF:0000034, ISBN:0781733901]
+comment: Legacy def: A cell of ectomesenchymal origin that aids in the formation the cementum layer on the roots of teeth.
+synonym: "cementum secreting cell" EXACT []
+xref: CALOHA:TS-1164
+xref: FMA:63002
+is_a: CL:0000062 ! osteoblast
+is_a: CL:0000151 ! secretory cell
+relationship: develops_from CL:0007002 ! precementoblast
+relationship: part_of UBERON:0005176 ! tooth enamel organ
+
+[Term]
+id: CL:0000062
+name: osteoblast
+namespace: cell
+def: "Skeletogenic cell that secretes osteoid, is capable of producing mineralized (hydroxyapatite) matrix, is located adjacent to or within osteoid tissue, and arises from the transformation of a preosteoblast cell." [GO_REF:0000034, MESH:A11.329.629]
+comment: non-encoded relationships from VSAO - capable_of_producing VSAO:0000020
+xref: BTO:0001593
+xref: CALOHA:TS-0720
+xref: FMA:66780
+is_a: CL:0000055 ! non-terminally differentiated cell
+is_a: CL:0002320 ! connective tissue cell
+relationship: develops_from CL:0007010 ! preosteoblast
+
+[Term]
+id: CL:0000063
+name: obsolete cell by histology
+namespace: cell
+def: "OBSOLETE: A classification of cells by their microscopic appearance." [FB:ma, GOC:tfm]
+comment: This term was made obsolete because there is no difference in meaning between it and 'cell', as any cell can be classified by its microscopic appearance. If you have used this term in annotation, please replace it with cell (CL:0000000), native cell (CL:0000003), or cell in vitro (CL:0001034) as appropriate.
+is_obsolete: true
+consider: CL:0000000
+cons...
 
[truncated message content]

[Obo-svn-commit] SF.net SVN: obo:[5376] uberon/trunk/subsets/mouse-view.owl

[<cmu...@us...>]

Revision: 5376
          http://sourceforge.net/p/obo/svn/5376
Author:   cmungall
Date:     2016-07-29 23:56:19 +0000 (Fri, 29 Jul 2016)
Log Message:
-----------
new

Added Paths:
-----------
    uberon/trunk/subsets/mouse-view.owl

Added: uberon/trunk/subsets/mouse-view.owl
===================================================================
--- uberon/trunk/subsets/mouse-view.owl	                        (rev 0)
+++ uberon/trunk/subsets/mouse-view.owl	2016-07-29 23:56:19 UTC (rev 5376)
@@ -0,0 +1,336034 @@
+Prefix(:=<http://purl.obolibrary.org/obo/uberon/bridge/collected-mouse.owl#>)
+Prefix(dc:=<http://purl.org/dc/elements/1.1/>)
+Prefix(obo:=<http://www.geneontology.org/formats/oboInOwl#http://purl.obolibrary.org/obo/>)
+Prefix(owl:=<http://www.w3.org/2002/07/owl#>)
+Prefix(rdf:=<http://www.w3.org/1999/02/22-rdf-syntax-ns#>)
+Prefix(xml:=<http://www.w3.org/XML/1998/namespace>)
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[truncated message content]

[Obo-svn-commit] SF.net SVN: obo:[5373] uberon/releases/2016-05-11/

[<cmu...@us...>]

Revision: 5373
          http://sourceforge.net/p/obo/svn/5373
Author:   cmungall
Date:     2016-05-12 03:06:24 +0000 (Thu, 12 May 2016)
Log Message:
-----------
new-release

Added Paths:
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[Obo-svn-commit] SF.net SVN: obo:[5371] uberon/releases/2016-04-19/trunk/

[<cmu...@us...>]

Revision: 5371
          http://sourceforge.net/p/obo/svn/5371
Author:   cmungall
Date:     2016-04-20 22:53:10 +0000 (Wed, 20 Apr 2016)
Log Message:
-----------
new-release

Added Paths:
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    uberon/releases/2016-04-19/trunk/

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[Obo-svn-commit] SF.net SVN: obo:[5370] uberon/releases/2016-04-19/

[<cmu...@us...>]

Revision: 5370
          http://sourceforge.net/p/obo/svn/5370
Author:   cmungall
Date:     2016-04-20 19:08:05 +0000 (Wed, 20 Apr 2016)
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-----------
new-release

Added Paths:
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    uberon/releases/2016-04-19/

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[Obo-svn-commit] SF.net SVN: obo:[5368] uberon/releases/2016-01-26/

[<cmu...@us...>]

Revision: 5368
          http://sourceforge.net/p/obo/svn/5368
Author:   cmungall
Date:     2016-01-29 07:23:32 +0000 (Fri, 29 Jan 2016)
Log Message:
-----------
new-release

Added Paths:
-----------
    uberon/releases/2016-01-26/

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[Obo-svn-commit] SF.net SVN: obo:[5366] uberon/releases/2015-11-19/

[<cmu...@us...>]

Revision: 5366
          http://sourceforge.net/p/obo/svn/5366
Author:   cmungall
Date:     2015-11-20 07:28:29 +0000 (Fri, 20 Nov 2015)
Log Message:
-----------
new-release

Added Paths:
-----------
    uberon/releases/2015-11-19/

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[Obo-svn-commit] SF.net SVN: obo:[5364] uberon/releases/2015-09-27/

[<cmu...@us...>]

Revision: 5364
          http://sourceforge.net/p/obo/svn/5364
Author:   cmungall
Date:     2015-09-30 15:35:37 +0000 (Wed, 30 Sep 2015)
Log Message:
-----------
new-release

Added Paths:
-----------
    uberon/releases/2015-09-27/

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[Obo-svn-commit] SF.net SVN: obo:[5362] uberon/releases/2015-08-11/

[<cmu...@us...>]

Revision: 5362
          http://sourceforge.net/p/obo/svn/5362
Author:   cmungall
Date:     2015-08-12 18:57:42 +0000 (Wed, 12 Aug 2015)
Log Message:
-----------
new-release

Added Paths:
-----------
    uberon/releases/2015-08-11/

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[Obo-svn-commit] SF.net SVN: obo:[5360] uberon/releases/2015-07-24/

[<cmu...@us...>]

Revision: 5360
          http://sourceforge.net/p/obo/svn/5360
Author:   cmungall
Date:     2015-07-28 03:50:57 +0000 (Tue, 28 Jul 2015)
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Added Paths:
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[Obo-svn-commit] SF.net SVN: obo:[5358] uberon/releases/2015-06-22/

[<cmu...@us...>]

Revision: 5358
          http://sourceforge.net/p/obo/svn/5358
Author:   cmungall
Date:     2015-06-23 02:56:48 +0000 (Tue, 23 Jun 2015)
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new-release

Added Paths:
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    uberon/releases/2015-06-22/

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[Obo-svn-commit] SF.net SVN: obo:[5356] uberon/releases/2015-05-25/

[<cmu...@us...>]

Revision: 5356
          http://sourceforge.net/p/obo/svn/5356
Author:   cmungall
Date:     2015-05-25 22:29:02 +0000 (Mon, 25 May 2015)
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Added Paths:
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[Obo-svn-commit] SF.net SVN: obo:[5354] phenotype-commons/annotations/OMIM/by-disease

[<koe...@us...>]

Revision: 5354
          http://sourceforge.net/p/obo/svn/5354
Author:   koehlers
Date:     2015-04-26 12:56:14 +0000 (Sun, 26 Apr 2015)
Log Message:
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removed test folders

Removed Paths:
-------------
    phenotype-commons/annotations/OMIM/by-disease/common-diseases/
    phenotype-commons/annotations/OMIM/by-disease/rare-diseases/

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[Obo-svn-commit] SF.net SVN: obo:[5353] phenotype-commons/annotations/OMIM/by-disease/ rare-diseases/test12/OMIM-106190.tab

[<koe...@us...>]

Revision: 5353
          http://sourceforge.net/p/obo/svn/5353
Author:   koehlers
Date:     2015-04-25 05:47:47 +0000 (Sat, 25 Apr 2015)
Log Message:
-----------


Added Paths:
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    phenotype-commons/annotations/OMIM/by-disease/rare-diseases/test12/OMIM-106190.tab

Copied: phenotype-commons/annotations/OMIM/by-disease/rare-diseases/test12/OMIM-106190.tab (from rev 5350, phenotype-commons/annotations/OMIM/by-disease/annotated/OMIM-106190.tab)
===================================================================
--- phenotype-commons/annotations/OMIM/by-disease/rare-diseases/test12/OMIM-106190.tab	                        (rev 0)
+++ phenotype-commons/annotations/OMIM/by-disease/rare-diseases/test12/OMIM-106190.tab	2015-04-25 05:47:47 UTC (rev 5353)
@@ -0,0 +1,7 @@
+Disease ID	Disease Name	Gene ID	Gene Name	Genotype	Gene Symbol(s)	Phenotype ID	Phenotype Name	Age of Onset ID	Age of Onset Name	Evidence ID	Evidence Name	Frequency	Sex ID	Sex Name	Negation ID	Negation Name	Description	Pub	Assigned by	Date Created	
+OMIM:106190	ANHIDROSIS, FAMILIAL GENERALIZED, WITH NORMAL SWEAT GLANDS					HP:0000006	Autosomal dominant inheritance			IEA	IEA							OMIM:106190	HPO	17.02.2009	
+OMIM:106190	ANHIDROSIS, FAMILIAL GENERALIZED, WITH NORMAL SWEAT GLANDS					HP:0007459	Generalized anhidrosis			TAS	TAS							OMIM:106190	HPO:skoehler	17.02.2009	
+OMIM:106190	ANHIDROSIS, FAMILIAL GENERALIZED, WITH NORMAL SWEAT GLANDS					HP:0002046	Heat intolerance			TAS	TAS							OMIM:106190	HPO:skoehler	05.08.2012	
+OMIM:106190	ANHIDROSIS, FAMILIAL GENERALIZED, WITH NORMAL SWEAT GLANDS					HP:0000970	Anhidrosis			IEA	IEA						Disease name contained:anhidrosis, familial generaliz	OMIM:106190	HPO:skoehler	27.01.2015
+OMIM:106190	#106190 ANHIDROSIS, ISOLATED, WITH NORMAL SWEAT GLANDS; ANHD;;DANN-EPSTEIN-SOHAR SYNDROME					HP:0001507	Growth abnormality			IEA	IEA				NOT	NOT	OMIM-CS:GROWTH_OTHER > NORMAL GROWTH	OMIM:106190	HPO:skoehler	05.04.2015
+OMIM:106190	#106190 ANHIDROSIS, ISOLATED, WITH NORMAL SWEAT GLANDS; ANHD;;DANN-EPSTEIN-SOHAR SYNDROME					HP:0001595	Abnormality of the hair			IEA	IEA				NOT	NOT	OMIM-CS:SKIN, NAILS, HAIR_HAIR > NO HAIR ABNORMALITY	OMIM:106190	HPO:skoehler	05.04.2015

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[Obo-svn-commit] SF.net SVN: obo:[5352] phenotype-commons/annotations/OMIM/by-disease/ rare-diseases/test12/

[<koe...@us...>]

Revision: 5352
          http://sourceforge.net/p/obo/svn/5352
Author:   koehlers
Date:     2015-04-25 05:43:38 +0000 (Sat, 25 Apr 2015)
Log Message:
-----------


Added Paths:
-----------
    phenotype-commons/annotations/OMIM/by-disease/rare-diseases/test12/

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