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[Obo-svn-commit] SF.net SVN: obo: [1134] phenote/trunk/doc/phenote-website/phenote.html
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From: <mg...@us...> - 2007-11-06 15:43:48
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Revision: 1134
http://obo.svn.sourceforge.net/obo/?rev=1134&view=rev
Author: mgibson
Date: 2007-11-06 07:43:50 -0800 (Tue, 06 Nov 2007)
Log Message:
-----------
added 1.5-beta1 to unofficial phenote page
Modified Paths:
--------------
phenote/trunk/doc/phenote-website/phenote.html
Modified: phenote/trunk/doc/phenote-website/phenote.html
===================================================================
--- phenote/trunk/doc/phenote-website/phenote.html 2007-11-06 15:18:51 UTC (rev 1133)
+++ phenote/trunk/doc/phenote-website/phenote.html 2007-11-06 15:43:50 UTC (rev 1134)
@@ -1,62 +1,101 @@
<!DOCTYPE html PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN">
-<html><head>
+<html>
+<head>
+
+
<meta content="text/html; charset=ISO-8859-1" http-equiv="content-type">
- <title>Phenote</title></head>
+
+ <title>Phenote</title>
+</head>
+
<body>
+
<h1 style="text-align: left;"><span style="font-weight: bold;"></span>Phenote<br>
+
</h1>
+
<br>
+
Phenote is a tool to annotate phenotypes using the Entity Quality
paradigm. It takes advantage of
ontologies. It uses term completion to allow curators quick access to
the ontology terms they want to use. <br>
+
<br>
+<a href="1.5-beta1/phenote.jnlp">Phenote 1.5-beta1</a><br>
+
<a href="1.4/phenote.jnlp">Phenote 1.4</a><br>
+
<br>
+
<br>
+
After phenote downloads the java jar files (takes a while) it will ask
you what configuration you would like to use, fly, zfin, human,worm,birn....<br>
+
<br>
+
<a href="phenote-release-notes.shtml">Phenote Release Notes and old
webstart releases</a><br>
+
Please see the release notes for recent changes.<br>
+
<br>
+
Zebrafish requires
components of phenote(to plug into their non-public
website), not a full web app. Here is a proof of concept of some of
those
components:<br>
+
<br>
+
<a href="http://reaper.lbl.gov/phenote/html/ncbo.html">Webby
Phenote(components used by Zfin)</a><br>
+
<br>
+
Webby phenote is a collaboration with Sohel Merchant at dictyBase, and Christian Pich & Kevin Schaper at zfin.
Here is what Dicty has done:<br>
+
<br>
+
<a href="http://165.124.152.194/db/cgi-bin/dictyBase/curation/phenotypeCuration.pl">DictyBase
webby phenote</a><br>
+
<br>
+
<br>
+
We would love to get your feedback! Please report any bugs (ideally through the <a href="https://sourceforge.net/tracker/?group_id=76834&atid=887913">bug
tracker</a>) and let us know what you
think (email:<a href="mailto:mg...@be..."> mg...@be...</a>, email list: <a href="mailto:obo...@li...">obo...@li...</a>).<br>
+
<br>
+
<h4>Phenote links:<br>
+
</h4>
+
<a href="https://lists.sourceforge.net/lists/listinfo/obo-phenote">Phenote
email list</a><br>
+
<a href="https://sourceforge.net/tracker/?group_id=76834&atid=887913">Phenote
bug tracker</a><br>
+
<a href="https://lists.sourceforge.net/lists/listinfo/obo-phenote-bug-tracker">Bug
tracker email list</a><br>
+
<a href="https://sourceforge.net/svn/?group_id=76834">Phenote source
code (obo sourceforge svn)</a><br>
+
<a href="https://lists.sourceforge.net/lists/listinfo/obo-svn-commit">Phenote
svn commit email list</a><br>
+
<a href="http://wiki.dictybase.org/dictywiki/index.php/Phenotype_Curation_Tool_Documentation#Usage">Dicty
webby phenote wiki developer docs</a><br>
@@ -72,6 +111,7 @@
+
<a href="http://www.bioontology.org/wiki-internal/index.php/Phenotype_Annotation_Tool">Phenote
ncbo internal wiki (ncbo folk only)</a><br>
@@ -82,6 +122,7 @@
+
<a href="developer-docs/dataadapter.html">Phenote dataadapter developer doc</a><br>
@@ -89,6 +130,7 @@
+
<a href="developer-docs/developer-docs.html">More developer docs</a><br>
@@ -103,6 +145,7 @@
+
<br>
@@ -117,6 +160,7 @@
+
<br>
@@ -131,6 +175,7 @@
+
If the Phenote webstart link fails to do anything, then there are
probably problems
with webstart and/or java(has to be jdk 1.5). Take a look at the <a href="webstart-troubleshooting.html">webstart troubleshooting</a><br>
@@ -147,6 +192,7 @@
+
page.<br>
@@ -161,6 +207,7 @@
+
<br>
@@ -175,6 +222,7 @@
+
Click here for <a href="phenote-java-requirements.html">phenote java
requirements</a><br>
@@ -190,6 +238,7 @@
+
<br>
@@ -204,6 +253,7 @@
+
<br>
@@ -218,6 +268,7 @@
+
<br>
@@ -232,6 +283,7 @@
+
Old releases: <br>
@@ -246,7 +298,9 @@
+
<a href="1.4-beta3/phenote.jnlp">Phenote 1.4-beta3</a><br>
+
<a href="1.4-beta2/phenote.jnlp">Phenote 1.4-beta2</a><br>
@@ -260,22 +314,27 @@
+
<a href="1.3/phenote.jnlp">Phenote 1.3</a><br>
+
<a href="1.3-beta1/phenote.jnlp">Phenote 1.3-beta1</a><br>
+
<a href="1.2/phenote.jnlp">Phenote 1.2</a><br>
+
<a href="1.1/phenote.jnlp">Phenote 1.1</a><br>
+
<a href="1.0/phenote-flybase.jnlp">Phenote 1.0 for fly</a><br>
@@ -290,6 +349,7 @@
+
<a href="1.0/phenote-zfin.jnlp">Phenote 1.0 for zfin</a><br>
@@ -303,6 +363,7 @@
+
<a href="1.0/phenote-human.jnlp">Phenote 1.0 for human</a><br>
@@ -314,6 +375,7 @@
+
<br>
@@ -328,6 +390,7 @@
+
<a href="0.9/phenote-flybase.jnlp">Phenote 0.9 for fly</a><br>
@@ -342,6 +405,7 @@
+
<a href="0.9/phenote-zfin.jnlp">Phenote (standalone) 0.9 for zfin</a><br>
@@ -355,6 +419,7 @@
+
<br>
@@ -368,6 +433,7 @@
+
<a href="0.8/phenote-flybase.jnlp">Phenote 0.8 for fly.</a><br>
@@ -382,6 +448,7 @@
+
<a href="0.8/phenote-zfin.jnlp">Phenote (standalone) 0.8 for zfin</a><br>
@@ -396,6 +463,7 @@
+
<br>
@@ -410,6 +478,7 @@
+
<a href="0.7/phenote-flybase.jnlp">Phenote 0.7 for fly.</a><br>
@@ -424,6 +493,7 @@
+
<a href="0.7/phenote-zfin.jnlp">Phenote (standalone) 0.7 for zfin</a><br>
@@ -438,6 +508,7 @@
+
<br>
@@ -452,6 +523,7 @@
+
<a href="0.6/phenote-flybase.jnlp">Phenote 0.6 with fly anatomy</a><br>
@@ -466,6 +538,7 @@
+
<br>
@@ -480,6 +553,7 @@
+
<a href="0.6/phenote-zfin.jnlp">Phenote 0.6 with zebrafish anatomy</a><br>
@@ -494,6 +568,7 @@
+
<br>
@@ -508,6 +583,7 @@
+
<a href="0.5/phenote-flybase.jnlp">Phenote 0.5 webstart for FlyBase</a><br>
@@ -522,6 +598,7 @@
+
<br>
@@ -536,6 +613,7 @@
+
<a href="0.5/phenote-zfin.jnlp">Phenote 0.5 webstart for ZFIN</a><br>
@@ -550,6 +628,7 @@
+
<br>
@@ -564,6 +643,7 @@
+
<a href="0.4/phenote-flybase.jnlp">Phenote 0.4 webstart for FlyBase</a><br>
@@ -578,6 +658,7 @@
+
<br>
@@ -592,6 +673,7 @@
+
<a href="0.4/phenote-zfin.jnlp">Phenote 0.4 webstart for ZFIN</a><br>
@@ -606,6 +688,7 @@
+
<br>
@@ -620,6 +703,7 @@
+
<a href="0.3.1/phenote-webstart.jnlp">Phenote for CToL group (0.3.1)</a>
(a special release for the CToL group that uses fish
taxonomy)<br>
@@ -636,6 +720,7 @@
+
<br>
@@ -650,6 +735,7 @@
+
<a href="0.3/phenote-webstart.jnlp">Phenote 0.3</a><br>
@@ -664,6 +750,7 @@
+
<br>
@@ -678,6 +765,7 @@
+
<a href="0.2/phenote-webstart.jnlp">Phenote 0.2</a><br>
@@ -692,6 +780,7 @@
+
<br>
@@ -706,6 +795,7 @@
+
<a href="0.1/phenote-webstart.jnlp">Phenote 0.1</a><br>
@@ -720,6 +810,7 @@
+
<br>
@@ -734,6 +825,7 @@
+
<br>
@@ -748,4 +840,6 @@
-</body></html>
\ No newline at end of file
+
+</body>
+</html>
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