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[Obo-svn-commit] SF.net SVN: obo: [658] phenote/trunk/data/birn-test.xls
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From: <nl...@us...> - 2007-06-05 00:08:36
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Revision: 658
http://svn.sourceforge.net/obo/?rev=658&view=rev
Author: nlw
Date: 2007-06-04 17:08:36 -0700 (Mon, 04 Jun 2007)
Log Message:
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adding some test data for the BIRN project
this is for the birn2.cfg configuration
Added Paths:
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phenote/trunk/data/birn-test.xls
Added: phenote/trunk/data/birn-test.xls
===================================================================
--- phenote/trunk/data/birn-test.xls (rev 0)
+++ phenote/trunk/data/birn-test.xls 2007-06-05 00:08:36 UTC (rev 658)
@@ -0,0 +1,47 @@
+Pub Image Organism Phenotypic Character Entity ID Entity Name Quality ID Quality Name Add'l Entity ID Add'l Entity Name Compare To Description
+PD_data_annot_spread2:10 Mouse Strain (D-Line) colocated expression of human alpha synuclein and mGlur5 sao:Glutamate_Receptor^OBO_REL:located_in(MA:0000950) Glutamate_Receptor that located_in hippocampus CA1 PATO:0001162 increased concentration non-transgenic animals mGlur5 expression increased in Area CA1
+PD_data_annot_spread2:11 Mouse Strain (D-Line) colocated expression of human alpha synuclein and mGlur5 sao:Glutamate_Receptor^OBO_REL:located_in(MA:0000952) Glutamate_Receptor that located_in hippocampus CA3 PATO:0001162 increased concentration non-transgenic animals mGlur5 expression increased in Area CA3
+PD_data_annot_spread2:12 Mouse Strain (D-Line) colocated expression of human alpha synuclein and mGlur5 sao:Glutamate_Receptor^OBO_REL:located_in(MA:0000190) Glutamate_Receptor that located_in dentate gyrus PATO:0001162 increased concentration non-transgenic animals mGlur5 expression increased
+PD_data_annot_spread2:14 Mouse Strain (D-Line) colocated expression of human alpha synuclein and mGlur5 sao:Protein^OBO_REL:located_in(MA:0000907) Protein that located_in primary motor cortex PATO:0001162 increased concentration non-transgenic animals human alpha synuclein expression increased
+PD_data_annot_spread2:15 Mouse Strain (D-Line) colocated expression of human alpha synuclein and mGlur5 sao:Protein^OBO_REL:located_in(MA:0000978) Protein that located_in piriform cortex PATO:0001162 increased concentration non-transgenic animals human alpha synuclein expression increased
+PD_data_annot_spread2:16 Mouse Strain (D-Line) colocated expression of human alpha synuclein and mGlur5 sao:Protein^OBO_REL:located_in(MA:0000891) Protein that located_in striatum PATO:0001162 increased concentration non-transgenic animals human alpha synuclein expression increased
+PD_data_annot_spread2:17 Mouse Strain (D-Line) colocated expression of human alpha synuclein and mGlur5 sao:Protein^OBO_REL:located_in(MA:0000210) Protein that located_in substantia nigra PATO:0001162 increased concentration non-transgenic animals human alpha synuclein expression increased
+PD_data_annot_spread2:18 Mouse Strain (D-Line) colocated expression of human alpha synuclein and mGlur5 sao:Protein^OBO_REL:located_in(MA:0000950) Protein that located_in hippocampus CA1 PATO:0001162 increased concentration non-transgenic animals human alpha synuclein expression increased
+PD_data_annot_spread2:19 Mouse Strain (D-Line) colocated expression of human alpha synuclein and mGlur5 sao:Protein^OBO_REL:located_in(MA:0000952) Protein that located_in hippocampus CA3 PATO:0001162 increased concentration non-transgenic animals human alpha synuclein expression increased
+PD_data_annot_spread2:20 Mouse Strain (D-Line) colocated expression of human alpha synuclein and mGlur5 sao:Protein^OBO_REL:located_in(MA:0000190) Protein that located_in dentate gyrus PATO:0001162 increased concentration non-transgenic animals human alpha synuclein expression increased
+PD_data_annot_spread2:22 Mouse Strain (D-Line) Dopamine Receptor (D1) Expression FMA:61986^OBO_REL:located_in(MA:0000891) D1 receptor that located_in striatum PATO:0001162 increased concentration non-transgenic animals D1 receptor expression in dorsal medial striatum
+PD_data_annot_spread2:3 Mouse Strain (D-Line) cognitive deficit GO:0007613 memory PATO:0000762 impaired
+PD_data_annot_spread2:3 Mouse Strain (D-Line) cognitive deficit GO:0050890 cognition PATO:0000762 impaired
+PD_data_annot_spread2:4 Mouse Strain (D-Line) motor deficit GO:0008344 adult locomotory behavior PATO:0000188 coordination non-transgenic animals decreased coordination
+PD_data_annot_spread2:4 Mouse Strain (D-Line) motor deficit GO:0008344 adult locomotory behavior PATO:0001779 decreased strength non-transgenic animals
+PD_data_annot_spread2:4 Mouse Strain (D-Line) motor deficit GO:0008344 adult locomotory behavior PATO:0000762 impaired non-transgenic animals
+PD_data_annot_spread2:5 Mouse Strain (D-Line)+MPEP mGluR5 antagonism mediated via MPEP GO:0008344 adult locomotory behavior PATO:0000188 coordination pre-MPEP D-Line animals increased coordination
+PD_data_annot_spread2:5 Mouse Strain (D-Line)+MPEP mGluR5 antagonism mediated via MPEP GO:0008344 adult locomotory behavior PATO:0001778 increased strength pre-MPEP D-Line animals
+PD_data_annot_spread2:6 Mouse Strain (D-Line) colocated expression of human alpha synuclein and mGlur5 sao:Glutamate_Receptor^OBO_REL:located_in(MA:0000907) Glutamate_Receptor that located_in primary motor cortex PATO:0001162 increased concentration non-transgenic animals mGlur5 expression increased
+PD_data_annot_spread2:7 Mouse Strain (D-Line) colocated expression of human alpha synuclein and mGlur5 sao:Glutamate_Receptor^OBO_REL:located_in(MA:0000978) Glutamate_Receptor that located_in piriform cortex PATO:0001162 increased concentration non-transgenic animals mGlur5 expression increased
+PD_data_annot_spread2:8 Mouse Strain (D-Line) colocated expression of human alpha synuclein and mGlur5 sao:Glutamate_Receptor^OBO_REL:located_in(MA:0000891) Glutamate_Receptor that located_in striatum PATO:0001162 increased concentration non-transgenic animals mGlur5 expression increased in neostriatum
+PD_data_annot_spread2:9 Mouse Strain (D-Line) colocated expression of human alpha synuclein and mGlur5 sao:Glutamate_Receptor^OBO_REL:located_in(MA:0000210) Glutamate_Receptor that located_in substantia nigra PATO:0001162 increased concentration non-transgenic animals mGlur5 expression increased in neostriatum
+inclusion_body_test_case_v1:4 human Lewy Neurite (LN) - Inclusion Body sao:Subregional_part_of_neuron_process^OBO_REL:contains(sao:Terminal_Bouton) Subregional_part_of_neuron_process that contains Terminal_Bouton PATO:0001409 spindle-shaped
+inclusion_body_test_case_v1:5 human Lewy Neurite (LN) - Inclusion Body sao:Subregional_part_of_neuron_process^OBO_REL:contains(sao:Terminal_Bouton) Subregional_part_of_neuron_process that contains Terminal_Bouton PATO:0000052 shape thread-like shape
+inclusion_body_test_case_v1:6 human Lewy Neurite (LN) - Inclusion Body sao:Subregional_part_of_neuron_process^OBO_REL:contains(sao:Terminal_Bouton) Subregional_part_of_neuron_process that contains Terminal_Bouton PATO:0000402 branched
+inclusion_body_test_case_v1:9 human Lewy Body (LB) - Inclusion Body sao:Somatic_Spine Somatic_Spine PATO:0001759 granular
+inclusion_body_test_case_v1:9 human Lewy Body (LB) - Inclusion Body sao:Somatic_Spine Somatic_Spine PATO:0001629 aggregated contains 'granular aggregate' - chosen quality not quite right
+inclusion_body_test_case_v1:10 human Lewy Body (LB) - Inclusion Body sao:Somatic_Spine Somatic_Spine PATO:0001499 spherical spherical pale body
+inclusion_body_test_case_v1:10 human Lewy Body (LB) - Inclusion Body sao:Somatic_Spine Somatic_Spine PATO:0000328 pale spherical pale body
+inclusion_body_test_case_v1:14 human LB & LN - Inclusion Body GO:0016234 inclusion body PATO:0000025 composition sao:Protein Protein alpha-synuclein
+inclusion_body_test_case_v1:18 human LB & LN - Inclusion Body GO:0016234 inclusion body PATO:0000025 composition sao:Protein Protein synphilin-1
+inclusion_body_test_case_v1:19 human LB & LN - Inclusion Body GO:0016234 inclusion body PATO:0000025 composition sao:Neurofilament^OBO_REL:contains(GO:0006468) Neurofilament that contains protein amino acid phosphorylation trying to represent 'phosphorylated neurofilament'...but there's nothing that captures this properly
+inclusion_body_test_case_v1:20 human LB & LN - Inclusion Body GO:0016234 inclusion body PATO:0000025 composition GO:0016567 protein ubiquitination ubiquitin - not really a term for the molecule in an ontology anywhere!
+inclusion_body_test_case_v1:15 human LB & LN - Inclusion Body GO:0016234 inclusion body PATO:0000025 composition sao:Protein Protein alpha-synuclein - can't figure out how to say non-membrane bound!
+inclusion_body_test_case_v1:15 human LB & LN - Inclusion Body sao:Protein Protein PATO:0000141 structure sao:Protein Protein alpha-synuclein - can't figure out how to say pleated
+inclusion_body_test_case_v1:25 human Susceptible cell type FMA:67310 Projection neuron PATO:0000467 present cell type = projection neuron
+inclusion_body_test_case_v1:26 human Susceptible cell type FMA:67308^OBO_REL:part_of(FMA:67310) Axon^part_of(Projection neuron) PATO:0001154 elongated cell type = projection neuron
+inclusion_body_test_case_v1:26 human Susceptible cell type FMA:67308^OBO_REL:part_of(FMA:67310) Axon^part_of(Projection neuron) PATO:0001470 proportionality to FMA:67301^OBO_REL:part_of(FMA:67310) Cell body^part_of(Projection neuron) axon length disproportionate to size of cell soma
+inclusion_body_test_case_v1:27 human Susceptible cell type FMA:67308^OBO_REL:part_of(FMA:67310) Axon^part_of(Projection neuron) PATO:0000592 decreased thickness thin axon
+inclusion_body_test_case_v1:28 human Susceptible cell type FMA:67308^OBO_REL:part_of(FMA:67310) Axon^part_of(Projection neuron) PATO:0001557 lacking physical part sao:Myelin_Sheath Myelin_Sheath unmyelinated
+inclusion_body_test_case_v1:29 human Susceptible cell type FMA:67308^OBO_REL:part_of(FMA:67310) Axon^part_of(Projection neuron) PATO:0001163 decreased concentration sao:Myelin_Sheath Myelin_Sheath poorly myelinated
+inclusion_body_test_case_v1:30 human Susceptible cell type GO:0019226^OBO_REL:located_in(FMA:67310) transmission of nerve impulse^located_in(Projection neuron) PATO:0001839 increased flow high energy output
+inclusion_body_test_case_v1:32 human Susceptible cell type GO:0048668^OBO_REL:located_in(FMA:67310) collateral sprouting^located_in(Projection neuron) PATO:0000420 increased number increased pathological sprouting (how to use pathological?)
+inclusion_body_test_case_v1:33 human Susceptible cell type sao:Neuromelanin^OBO_REL:part_of(FMA:67310)^OBO_REL:part_of(FMA:62907) Neuromelanin^part_of(Projection neuron)^part_of(Substantia nigra pars compacta) PATO:0000467 present melanized projection nneuron of pars compacta of the substantia nigra
+inclusion_body_test_case_v1:34 human Susceptible cell type FMA:67310^OBO_REL:located_in(FMA:84039)^OBO_REL:located_in(FMA:63867) Projection neuron^located_in(Mesocortex)^located_in(Temporal part of head) PATO:0000587 decreased size small projection neurons of temporal mesocortex deep layers
+inclusion_body_test_case_v1:35 human Susceptible cell type sao:Neuron^OBO_REL:contains(FMA:62295)^OBO_REL:part_of(FMA:67947) Neuron^contains(Melanin)^part_of(Substantia nigra) PATO:0001154 elongated melanoneurons of substantia nigra
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