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[Obo-svn-commit] SF.net SVN: obo: [205] phenote/trunk/doc
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From: <mg...@us...> - 2006-11-17 18:29:13
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Revision: 205
http://svn.sourceforge.net/obo/?rev=205&view=rev
Author: mgibson
Date: 2006-11-17 10:29:07 -0800 (Fri, 17 Nov 2006)
Log Message:
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added web page for phenote web home - so can be mutually modified by
nicole & i
Added Paths:
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phenote/trunk/doc/phenote-web-site/
phenote/trunk/doc/phenote-web-site/phenote.html
Added: phenote/trunk/doc/phenote-web-site/phenote.html
===================================================================
--- phenote/trunk/doc/phenote-web-site/phenote.html (rev 0)
+++ phenote/trunk/doc/phenote-web-site/phenote.html 2006-11-17 18:29:07 UTC (rev 205)
@@ -0,0 +1,117 @@
+<!DOCTYPE html PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN">
+<html>
+<head>
+ <meta content="text/html; charset=ISO-8859-1"
+ http-equiv="content-type">
+ <title>Phenote</title>
+</head>
+<body>
+<h1 style="text-align: left;"><span style="font-weight: bold;"></span>Phenote<br>
+</h1>
+<br>
+Phenote is a tool to annotate phenotypes using the Entity Quality
+paradigm. It takes advantage of
+ontologies. It uses term completion to allow curators quick access to
+the ontology terms they want to use. <br>
+<br>
+<a href="0.9/phenote-flybase.jnlp">Phenote 0.9 for fly</a><br>
+<br>
+<a href="0.9/phenote-zfin.jnlp">Phenote (standalone) 0.9 for zfin</a><br>
+<br>
+To be clear the above webstart links for zfin & fly were made via
+configuration not hard wired code. Thus one could in theory configure
+phenote for ones own purposes.<br>
+<br>
+Recent addditions include the ability to post compose terms, bul
+update, undo, spring framework, and
+synonyms now are shown in the completion list.<br>
+<br>
+Zebrafish requires
+components of phenote(to plug into their non-public
+website), not a full web app. Here is a proof of concept of some of
+those
+components:<br>
+<br>
+<a href="http://reaper.lbl.gov/phenote/html/ncbo.html">Webby
+Phenote(components used by Zfin)</a><br>
+<br>
+Webby phenote is a collaboration with Sohel Merchant at DichtyBase.
+Here is what they have done:<br>
+<br>
+<a
+ href="http://165.124.152.194/db/cgi-bin/dictyBase/curation/phenotypeCuration.pl">DichtyBase
+webby phenote</a><br>
+<br>
+<br>
+I am doing these
+releases to get feedback. Please report any bugs (ideally through the <a
+ href="https://sourceforge.net/tracker/?group_id=76834&atid=887913">bug
+tracker</a>) and let me know what you
+think (mg...@fr...).<br>
+<h4>Phenote links:<br>
+</h4>
+<a href="https://lists.sourceforge.net/lists/listinfo/obo-phenote">Phenote
+email list</a><br>
+<a href="https://sourceforge.net/tracker/?group_id=76834&atid=887913">Phenote
+bug tracker</a><br>
+<a
+ href="https://lists.sourceforge.net/lists/listinfo/obo-phenote-bug-tracker">Bug
+tracker email list</a><br>
+<a href="https://sourceforge.net/svn/?group_id=76834">Phenote source
+code (obo sourceforge svn)</a><br>
+<a href="https://lists.sourceforge.net/lists/listinfo/obo-svn-commit">Phenote
+svn commit email list</a><br>
+<a
+ href="http://wiki.dictybase.org/dictywiki/index.php/Phenotype_Curation_Tool_Documentation#Usage">Dichty
+webby phenote wiki developer docs</a><br>
+<a
+ href="http://www.bioontology.org/wiki-internal/index.php/Phenotype_Annotation_Tool">Phenote
+ncbo internal wiki (ncbo folk only)</a><br>
+<br>
+<a href="phenote-release-notes.html">Phenote Release Notes and old
+webstart releases</a><br>
+<br>
+If the Phenote webstart link fails to do anything, then there are
+probably problems
+with webstart and/or java(has to be jdk 1.5). Take a look at my <a
+ href="webstart-troubleshooting.html">webstart troubleshooting</a><br>
+page.<br>
+<br>
+Click here for <a href="phenote-java-requirements.html">phenote java
+requirements</a><br>
+<br>
+<br>
+<br>
+Old releases: <br>
+<br>
+<a href="0.8/phenote-flybase.jnlp">Phenote 0.8 for fly.</a><br>
+<a href="0.8/phenote-zfin.jnlp">Phenote (standalone) 0.8 for zfin</a><br>
+<br>
+<a href="0.7/phenote-flybase.jnlp">Phenote 0.7 for fly.</a><br>
+<a href="0.7/phenote-zfin.jnlp">Phenote (standalone) 0.7 for zfin</a><br>
+<br>
+<a href="0.6/phenote-flybase.jnlp">Phenote 0.6 with fly anatomy</a><br>
+<br>
+<a href="0.6/phenote-zfin.jnlp">Phenote 0.6 with zebrafish anatomy</a><br>
+<br>
+<a href="0.5/phenote-flybase.jnlp">Phenote 0.5 webstart for FlyBase</a><br>
+<br>
+<a href="0.5/phenote-zfin.jnlp">Phenote 0.5 webstart for ZFIN</a><br>
+<br>
+<a href="0.4/phenote-flybase.jnlp">Phenote 0.4 webstart for FlyBase</a><br>
+<br>
+<a href="0.4/phenote-zfin.jnlp">Phenote 0.4 webstart for ZFIN</a><br>
+<br>
+<a href="0.3.1/phenote-webstart.jnlp">Phenote for CToL group (0.3.1)</a>
+(a special release for the CToL group that uses fish
+taxonomy)<br>
+<br>
+<a href="0.3/phenote-webstart.jnlp">Phenote 0.3</a><br>
+<br>
+<a href="0.2/phenote-webstart.jnlp">Phenote 0.2</a><br>
+<br>
+<a href="0.1/phenote-webstart.jnlp">Phenote 0.1</a><br>
+<br>
+<br>
+</body>
+</html>
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