Re: [Obo-discuss] Request namespace for ICO: Informed Consent Ontology

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Oliver, Asiyah,

will you be at the CTSOG face to face meeting in Buffalo?

Best,
Mathias

On Tue, May 20, 2014 at 5:28 PM, He, Yongqun <yon...@me...> wrote:

>  Hi Mathias,
>
>
>
> Yes, we imported the d-acts term ‘socio-legal generically dependent
> continuant’ (http://purl.obolibrary.org/obo/IAO_0021004). We are prepared
> to use it.
>
>
>
> I agree that we should try to throw our approaches together to make
> something more complete. I knew your presentation in the CTSA affinity
> group but unfortunately I was not able to attend your talk due to a
> conflict of schedule. Could you provide your presentation slides to me?
>
>
>
> Thanks!
>
>
>
> Oliver
>
>
>
>
>
> *From:* Mathias Brochhausen [mailto:mbr...@gm...]
> *Sent:* Tuesday, May 20, 2014 3:05 PM
> *To:* obo-discuss
> *Cc:* Harris, Marcelline; Karnovsky, Alla; Frank J. Manion (
> fm...@um...); Shi, Wei; Bin Zhao; Asiyah Yu Lin; Obeid, Jihad;
> Melissa Haendel
>
> *Subject:* Re: [Obo-discuss] Request namespace for ICO: Informed Consent
> Ontology
>
>
>
> Hi,
>
>
>
> I gave a presentation to the CTSA affinity group a while ago. I think one
> improvement would be to start representing the actual rights and
> obligations using d-acts (you imported at least one class of d-acts, which
> I think is a good start). Maybe we should try and thorw our approaches
> together and see whether that gives us something more complete.
>
>
>
> Best,
>
> Mathias
>
>
>
>
>
> On Tue, May 20, 2014 at 11:50 AM, He, Yongqun <yon...@me...>
> wrote:
>
> Melissa, thanks for your providing the references.
>
>
>
> Yes. I am a member of the CTSA Electronic Consent Affinity Group, and
> Jihad is a leader of the group. We introduced ICO last year in one of the
> eConsent meetings. Jihad and the group have recently invited us to give a
> talk to introduce the ICO updates. We will do so soon.
>
>
>
> I also discussed with the Permission Ontology group in Feb 2013 in Orlando
> in a CTSA ontology workshop and introduced our BFO-based ICO initiative.
>
>
>
> Asiyah has summarized some major differences between the ICO and UCSD’s
> Permission Ontology.
>
>
>
> The ICO development team and its funding sources are summarized in the ICO
> project web page:
>
> https://code.google.com/p/ico-ontology/
>
>
>
> Although we have initiated  and developed the ICO ontology for more than
> one year, there is for sure a lot of room for the ontology to grow. The
> request of the ICO namespace is considered by us to provide an official
> first release of ICO, and we welcome critiques, comments, suggestions, and
> collaborations!
>
>
>
> Thanks.
>
>
>
> Oliver
>
>
>
>
>
> *From:* Asiyah Yu Lin [mailto:lin...@gm...]
> *Sent:* Tuesday, May 20, 2014 12:14 PM
> *To:* Melissa Haendel
> *Cc:* <obo...@li...>; Obeid, Jihad; Frank J. Manion (
> fm...@um...); Karnovsky, Alla; Harris, Marcelline; Bin Zhao; Shi,
> Wei; He, Yongqun
> *Subject:* Re: [Obo-discuss] Request namespace for ICO: Informed Consent
> Ontology
>
>
>
> Hi Melissa,
>
>
>
> Thanks for the references.
>
>
>
> I think Oliver is in the econsent group. He will provide some background
> information about his involvement of the group that Dr.Jihad is a member
> of, I believe.
>
>
>
> The major differences of ICO with other existing ontologies, such as Dr.
> Jihad's work and UCSD's permission ontology, is that ICO is a BFO-based
> ontology.
>
> Besides that, ICO models the bio banking consent, consent for behavioral
> science researches and consent for clinical research studies. ICO models
> both the informed consent form, which is a document, and also the consent
> processes and content using BFO's framework.
>
>
>
> It is an ongoing work supported by UM internal fund, and the proposed
> application is an ICO-based data management system that integrates
> different biobank and research data generated across studies within
> University of Michigan.
>
>
>
> Thanks,
>
> Asiyah
>
>
>
>
>
>
> ################################################
> Jedi Order:
>
> There is no emotion, there is peace.
>
> There is no ignorance, there is knowledge.
>
> There is no passion, there is serenity.
>
> There is no chaos, there is harmony.
>
> There is no death, there is Force.
>
>
>
> Our Jedi Code: May peace and force be with you.
>
>
>
>
>
> On Tue, May 20, 2014 at 11:43 AM, Melissa Haendel <ha...@oh...>
> wrote:
>
> Oliver, have you seen this work that Jihad's group has been doing:
>
> http://dx.doi.org/10.1109/HISB.2012.19
>
>
> http://ontology.buffalo.edu/smith/ppt/CTS-Ontology_2012/WorkshopDay1/Obeid_RPMS_ontology.pdf
>
> http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3845791/
>
>
>
> Just curious as to how these relate, or perhaps you all are already
> working together.
>
>
>
> Cheers,
>
> Melissa
>
>
>
>
>
> On May 20, 2014, at 8:24 AM, "He, Yongqun" <yon...@me...> wrote:
>
>
>
>    Dear OBO-discuss:
>
>
>
> Here we would like to request the addition to an Informed Consent Ontology
> (ICO) as an OBO Foundry ontology. ICO is an ontology of clinical informed
> consents. It is aligned with OBO Foundry library ontologies including BFO,
> OBI, IAO, and OGMS.
>
>
>
> As part of the consenting process in human subjects research, potential
> participants receive information about the purpose of the study, potential
> risks and benefits of participation, their rights, and the procedures to be
> undergone as part of the study. If the individual decides to participate,
> an informed consent document is signed and preserved as a record of
> voluntary participation in the research study. Following the OBO Foundry
> principles, the Informed Consent Ontology (ICO) logically represents the
> terms and their relations related to the informed consent process and
> content.
>
>
>
> The basic information about ICO is here:
>
>
>
> -          requested prefix: ICO
>
> -          ontology title: Informed Consent Ontology
>
> -          ontology of development version download link:
>
> http://ico-ontology.googlecode.com/svn/trunk/src/ontology/
>
> -          ontology home page:
>
> https://code.google.com/p/ico-ontology/
>
> -          point person contact email:
>
> Asiyah Yu Lin lin...@gm..., PURL user ID: linyumichigan
>
> or yon...@me... (yongqun “Oliver” he), PURL user ID: yongqunhe
>
> -          ontology discussion mailing-list:
>
> https://groups.google.com/forum/#!forum/ico-discuss
>
> -          ontology issue tracker link:
>
> https://code.google.com/p/ico-ontology/issues/list
>
>
>
> Thanks for your consideration,
>
>
>
> Asiyah Yu Lin & Oliver He
>
>
>
> Yongqun "Oliver" He, DVM, PhD
>
> Associate Professor
>
> Unit for Laboratory Animal Medicine
>
> Department of Microbiology and Immunology
>
> Center for Computational Medicine and Bioinformatics
>
> and Comprehensive Cancer Center
>
> University of Michigan Medical School
>
> Mail: 018 ARF, 1150 W. Medical Center Dr.
>
> Ann Arbor, MI 48109
>
> Email: yon...@me...
>
> Tel: 734-615-8231 (O)
>
> http://www.hegroup.org/
>
>
>
>
>
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>
>
> *Dr. Melissa Haendel *
> Assistant Professor
> Ontology Development Group, OHSU Library
>
> www.ohsu.edu/library/ontology
>
> Department of Medical Informatics and Epidemiology
> Oregon Health & Science University
> ha...@oh...
> skype: melissa.haendel
>
> 503-407-5970
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