Re: [Obo-discuss] Namespace and PURL request for Ontology of Biological Attributes (OBA)

[Chris M. <cjm...@lb...>]

Simon - is it possible to add OBA to OLS? There are multiple ID spaces 
in the same ontology, previously this caused problems with OLS.

Erick - the URL below is wrong and has stale content which I will 
remove.

The URLs to use are:

http://purl.obofoundry.org/obo/oba.owl
http://purl.obofoundry.org/obo/oba.obo



Thanks,
Chris

On 5 Mar 2014, at 7:45, Erick Antezana wrote:

> Hi,
>
> it would be great to have OBA in OLS (EBI) and BioPortal.
>
> BTW, are you planning on renaming the BATTO occurrences (
> http://www.berkeleybop.org/ontologies/bio-attributes/bio-attributes.obo) 
> by
> OBA?
>
> cheers,
> Erick
>
>
> On 23 November 2013 00:25, Chris Mungall <cjm...@lb...> wrote:
>
>> Hi Ramona
>>
>> More details here
>> http://sourceforge.net/mailarchive/message.php?msg_id=31242889
>>
>> repo is currently piggy backing off of go until we have a namespace.
>>
>> obo and owl available here:
>> http://www.berkeleybop.org/ontologies/bio-attributes/
>>
>>
>>
>> On Fri, Nov 22, 2013 at 2:50 PM, Ramona Walls 
>> <rlw...@gm...>wrote:
>>
>>> Hi Chris,
>>>
>>> Can you provide a link to the ontology or repository?
>>>
>>> Thanks,
>>> Ramona
>>>
>>> ------------------------------------------------------
>>> Ramona L. Walls, Ph.D.
>>> Scientific Analyst, The iPlant Collaborative, University of Arizona
>>> Laboratory Research Associate, New York Botanical Garden
>>>
>>>
>>> On Tue, Nov 5, 2013 at 2:46 PM, Chris Mungall <cjm...@lb...> 
>>> wrote:
>>>
>>>> I would like to use "OBA" as the namespace for the ontology 
>>>> previously
>>>> known as BATTO.
>>>>
>>>> This is a multi-species trait/attribute ontology that aggregates
>>>> existing taxon-specific trait ontologies and fills in additional 
>>>> terms in
>>>> its own namespace. It's currently being used by the GO and the EOL
>>>> (Encyclopaedia of Life). The terms are typically composed from the
>>>> attribute subset of PATO plus some additional ontology term.
>>>>
>>>> This was originally discussed on the obo-phenotype list:
>>>>
>>>>
>>>> http://sourceforge.net/mailarchive/forum.php?thread_name=CAN9AiftqwyaGf-WWju6TiX-gwDFixUew67V9crkETAE5OMipcA%40mail.gmail.com&forum_name=obo-phenotype
>>>>
>>>>
>>>> ------------------------------------------------------------------------------
>>>> November Webinars for C, C++, Fortran Developers
>>>> Accelerate application performance with scalable programming 
>>>> models.
>>>> Explore
>>>> techniques for threading, error checking, porting, and tuning. Get 
>>>> the
>>>> most
>>>> from the latest Intel processors and coprocessors. See abstracts 
>>>> and
>>>> register
>>>>
>>>> http://pubads.g.doubleclick.net/gampad/clk?id=60136231&iu=/4140/ostg.clktrk
>>>> _______________________________________________
>>>> Obo-discuss mailing list
>>>> Obo...@li...
>>>> https://lists.sourceforge.net/lists/listinfo/obo-discuss
>>>>
>>>>
>>>
>>>
>>> ------------------------------------------------------------------------------
>>> Shape the Mobile Experience: Free Subscription
>>> Software experts and developers: Be at the forefront of tech 
>>> innovation.
>>> Intel(R) Software Adrenaline delivers strategic insight and 
>>> game-changing
>>> conversations that shape the rapidly evolving mobile landscape. Sign 
>>> up
>>> now.
>>>
>>> http://pubads.g.doubleclick.net/gampad/clk?id=63431311&iu=/4140/ostg.clktrk
>>>
>>> _______________________________________________
>>> Obo-discuss mailing list
>>> Obo...@li...
>>> https://lists.sourceforge.net/lists/listinfo/obo-discuss
>>>
>>>
>>
>>
>> ------------------------------------------------------------------------------
>> Shape the Mobile Experience: Free Subscription
>> Software experts and developers: Be at the forefront of tech 
>> innovation.
>> Intel(R) Software Adrenaline delivers strategic insight and 
>> game-changing
>> conversations that shape the rapidly evolving mobile landscape. Sign 
>> up
>> now.
>> http://pubads.g.doubleclick.net/gampad/clk?id=63431311&iu=/4140/ostg.clktrk
>> _______________________________________________
>> Obo-discuss mailing list
>> Obo...@li...
>> https://lists.sourceforge.net/lists/listinfo/obo-discuss
>>
>>
> ------------------------------------------------------------------------------
> Subversion Kills Productivity. Get off Subversion & Make the Move to 
> Perforce.
> With Perforce, you get hassle-free workflows. Merge that actually 
> works.
> Faster operations. Version large binaries.  Built-in WAN optimization 
> and the
> freedom to use Git, Perforce or both. Make the move to Perforce.
> http://pubads.g.doubleclick.net/gampad/clk?id=122218951&iu=/4140/ostg.clktrk_______________________________________________
> Obo-discuss mailing list
> Obo...@li...
> https://lists.sourceforge.net/lists/listinfo/obo-discuss