From: Seth C. <sjc...@us...> - 2013-12-12 08:04:16
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Update of /cvsroot/obo/obo/ontology/phenotype/plant_traits In directory sfp-cvs-1.v30.ch3.sourceforge.com:/tmp/cvs-serv2401/phenotype/plant_traits Modified Files: plant_trait.obo Log Message: Automated file update Index: plant_trait.obo =================================================================== RCS file: /cvsroot/obo/obo/ontology/phenotype/plant_traits/plant_trait.obo,v retrieving revision 1.468 retrieving revision 1.469 diff -C2 -d -r1.468 -r1.469 *** plant_trait.obo 11 Dec 2013 08:03:53 -0000 1.468 --- plant_trait.obo 12 Dec 2013 08:04:14 -0000 1.469 *************** *** 1,4 **** format-version: 1.2 ! date: 10:12:2013 21:46 saved-by: cooperl auto-generated-by: OBO-Edit 2.3-beta5 --- 1,4 ---- format-version: 1.2 ! date: 11:12:2013 17:33 saved-by: cooperl auto-generated-by: OBO-Edit 2.3-beta5 *************** *** 115,119 **** def: "Average weight of the panicle from the plants or tillers in a given study." [GR:pj] synonym: "PNWT" RELATED [] ! is_a: TO:0000583 ! inflorescence weight [Term] --- 115,119 ---- def: "Average weight of the panicle from the plants or tillers in a given study." [GR:pj] synonym: "PNWT" RELATED [] ! is_a: TO:0000583 ! infructescence weight [Term] *************** *** 2989,2992 **** --- 2989,2993 ---- synonym: "panicle related trait" RELATED [] synonym: "tassel anatomy and morphology trait" RELATED [] + xref: OBO_SF2_PO:96 is_a: TO:0000786 ! reproductive shoot system anatomy and morphology trait *************** *** 4565,4568 **** --- 4566,4570 ---- def: "An inflorescence anatomy and morphology trait (TO:0000373) which is associated with the color of an inflorescence (PO:0009049)." [GR:pj, PO:0009049, POC:cooperl] comment: Refer to color PATO:0000014: A composite chromatic quality composed of hue, saturation and intensity parts. + xref: OBO_SF2_PO:96 xref: OBO_SF_TO:3531193 xref: PATO:0000014 *************** *** 4582,4588 **** [Term] id: TO:0000583 ! name: inflorescence weight ! def: "Average weight of the inflorescence carrying the mature fruits from the plants or tillers in a given study." [GR:pj] ! is_a: TO:0000371 ! yield trait [Term] --- 4584,4592 ---- [Term] id: TO:0000583 ! name: infructescence weight ! def: "An infructescence anatomy and morphology trait (TO:0000920) that is associated with the average weight (mass) of an infructescence bearing mature fruit (PO:0009001)." [GR:pj, TO:cooperl] ! comment: Refers to mass (PATO:0000125): A physical quality that inheres in a bearer by virtue of the proportion of the bearer's amount of matter. ! xref: OBO_SF2_PO:244 ! is_a: TO:0000920 ! infructescence anatomy and morphology trait [Term] *************** *** 4990,5004 **** [Term] - id: TO:0000637 - name: inflorescence width - synonym: "INFLWD" RELATED [] - synonym: "panicle width" RELATED [] - is_a: TO:0006031 ! inflorescence size - - [Term] id: TO:0000638 name: spike width synonym: "SPIKEWD" RELATED [] ! is_a: TO:0000637 ! inflorescence width [Term] --- 4994,5001 ---- [Term] id: TO:0000638 name: spike width synonym: "SPIKEWD" RELATED [] ! is_a: TO:0000804 ! inflorescence width [Term] *************** *** 5294,5302 **** [Term] - id: TO:0000679 - name: inflorescence diameter - is_a: TO:0006031 ! inflorescence size - - [Term] id: TO:0000680 name: inflorescence circumference --- 5291,5294 ---- *************** *** 6355,6358 **** --- 6347,6351 ---- comment: Refer to absolute density PATO:0001070. synonym: "panicle density (PO:0009049)" NARROW [] + xref: OBO_SF2_PO:96 xref: OBO_SF_TO:3531193 xref: PATO:0001070 *************** *** 6366,6369 **** --- 6359,6363 ---- def: "An inflorescence anatomy and morphology trait (TO:0000373) which is associated with the depth of an inflorescence (PO:0009049)." [PO:0009049, POC:cooperl] comment: Refer to depth PATO:0001595: A 1-D extent quality inhering in a bearer by virtue of the bearer's downward or backward or inward dimenision. + xref: OBO_SF2_PO:96 xref: OBO_SF_TO:3531193 xref: PATO:0001595 *************** *** 6375,6381 **** id: TO:0000802 name: inflorescence diameter def: "An inflorescence anatomy and morphology trait (TO:0000373) which is associated with the diameter of an inflorescence (PO:0009049)." [PO:0009049, POC:cooperl] comment: Refer to diameter PATO:0001334:A length quality which is equal to the length of any straight line segment that passes through the center of a circle and whose endpoints are on the circular boundary. ! xref: OBO_SF_TO:3531193 xref: PATO:0001334 is_a: TO:0000373 ! inflorescence anatomy and morphology trait --- 6369,6376 ---- id: TO:0000802 name: inflorescence diameter + alt_id: TO:0000679 def: "An inflorescence anatomy and morphology trait (TO:0000373) which is associated with the diameter of an inflorescence (PO:0009049)." [PO:0009049, POC:cooperl] comment: Refer to diameter PATO:0001334:A length quality which is equal to the length of any straight line segment that passes through the center of a circle and whose endpoints are on the circular boundary. ! xref: OBO_SF2_TO:96 xref: PATO:0001334 is_a: TO:0000373 ! inflorescence anatomy and morphology trait *************** *** 6388,6391 **** --- 6383,6387 ---- def: "An inflorescence anatomy and morphology trait (TO:0000373) which is associated with the weight of an inflorescence (PO:0009049)." [PO:0009049, POC:cooperl] comment: Refer to weight PATO:0000128:A physical quality inhering in a bearer that has mass near a gravitational body. + xref: OBO_SF2_PO:96 xref: OBO_SF_TO:3531193 xref: PATO:0000128 *************** *** 6397,6405 **** --- 6393,6406 ---- id: TO:0000804 name: inflorescence width + alt_id: TO:0000637 def: "An inflorescence anatomy and morphology trait (TO:0000373) which is associated with the width of an inflorescence (PO:0009049)." [PO:0009049, POC:cooperl] comment: Refer to width PATO:0000921: A 1-D extent quality which is equal to the distance from one side of an object to another side which is opposite. + synonym: "INFLWD" RELATED [] + synonym: "panicle width" RELATED [] + xref: OBO_SF2_PO:96 xref: OBO_SF_TO:3531193 xref: PATO:0000921 is_a: TO:0000373 ! inflorescence anatomy and morphology trait + relationship: part_of TO:0006031 ! inflorescence size created_by: moorel creation_date: 2012-06-01T13:25:43Z *************** *** 6410,6413 **** --- 6411,6415 ---- def: "An inflorescence anatomy and morphology trait (TO:0000373) which is associated with the texture of an inflorescence (PO:0009049)." [PO:0009049, POC:cooperl] comment: Refer to texture PATO:0000150: A morphologic quality inhering in a bearer by virtue of the bearer's relative size, organization and distribution of its surface elements or the representation or invention of the appearance of its surface; visual and tactile surface characteristics. + xref: OBO_SF2_PO:96 xref: OBO_SF_TO:3531193 xref: PATO:0000150 *************** *** 6421,6424 **** --- 6423,6427 ---- def: "An inflorescence anatomy and morphology trait (TO:0000373) which is associated with the presence of an inflorescence (PO:0009049)." [PO:0009049, POC:cooperl] comment: Refer to presence value PATO:0000458. + xref: OBO_SF2_PO:96 xref: OBO_SF_TO:3531193 xref: PATO:0000458 *************** *** 7568,7585 **** [Term] - id: TO:0000922 - name: <new term> - created_by: cooperl - creation_date: 2013-12-10T20:53:29Z - - [Term] id: TO:0000923 name: ear weight ! def: "An infructescence anatomy and morphology trait (TO:0000920) that is associated with the weight (mass) of an ear infructescence (PO:0025597)." [TO:cooperl] comment: Refers to mass (PATO:0000125): A physical quality that inheres in a bearer by virtue of the proportion of the bearer's amount of matter. subset: Zea_mays synonym: "earwt" RELATED [MaizeGDB:???] xref: OBO_SF2_PO:244 ! is_a: TO:0000920 ! infructescence anatomy and morphology trait created_by: cooperl creation_date: 2013-12-10T20:53:38Z --- 7571,7582 ---- [Term] id: TO:0000923 name: ear weight ! def: "An infructescence weight trait (TO:0000583) that is associated with the weight (mass) of an ear infructescence (PO:0025597)." [TO:cooperl] comment: Refers to mass (PATO:0000125): A physical quality that inheres in a bearer by virtue of the proportion of the bearer's amount of matter. subset: Zea_mays synonym: "earwt" RELATED [MaizeGDB:???] xref: OBO_SF2_PO:244 ! is_a: TO:0000583 ! infructescence weight created_by: cooperl creation_date: 2013-12-10T20:53:38Z |