[Obo-phenotype-commits] obo/ontology/phenotype mammalian_phenotype.obo, 1.468, 1.469

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Update of /cvsroot/obo/obo/ontology/phenotype
In directory sfp-cvs-1.v30.ch3.sourceforge.com:/tmp/cvs-serv2782/phenotype

Modified Files:
	mammalian_phenotype.obo 
Log Message:
Automated file update

Index: mammalian_phenotype.obo
===================================================================
RCS file: /cvsroot/obo/obo/ontology/phenotype/mammalian_phenotype.obo,v
retrieving revision 1.468
retrieving revision 1.469
diff -C2 -d -r1.468 -r1.469
*** mammalian_phenotype.obo	23 Mar 2013 08:38:51 -0000	1.468
--- mammalian_phenotype.obo	6 Apr 2013 08:41:26 -0000	1.469
***************
*** 1,4 ****
  format-version: 1.2
! date: 15:03:2013 15:42
  saved-by: csmith
  auto-generated-by: OBO-Edit 2.2
--- 1,4 ----
  format-version: 1.2
! date: 04:04:2013 16:25
  saved-by: csmith
  auto-generated-by: OBO-Edit 2.2
***************
*** 1206,1210 ****
  [Term]
  id: MP:0000194
! name: hypercalcemia
  alt_id: MP:0001563
  alt_id: MP:0001768
--- 1206,1210 ----
  [Term]
  id: MP:0000194
! name: increased circulating calcium level
  alt_id: MP:0001563
  alt_id: MP:0001768
***************
*** 1212,1215 ****
--- 1212,1216 ----
  subset: Europhenome_Terms
  subset: Sanger_Terms
+ synonym: "hypercalcemia" EXACT []
  synonym: "increased circulating calcium" EXACT []
  is_a: MP:0001562 ! abnormal circulating calcium level
***************
*** 1217,1221 ****
  [Term]
  id: MP:0000195
! name: hypocalcemia
  alt_id: MP:0001564
  alt_id: MP:0001769
--- 1218,1222 ----
  [Term]
  id: MP:0000195
! name: decreased circulating calcium level
  alt_id: MP:0001564
  alt_id: MP:0001769
***************
*** 1224,1232 ****
  subset: Sanger_Terms
  synonym: "decreased circulating calcium" EXACT []
  is_a: MP:0001562 ! abnormal circulating calcium level

  [Term]
  id: MP:0000198
! name: hypophosphatemia
  alt_id: MP:0001567
  alt_id: MP:0001774
--- 1225,1235 ----
  subset: Sanger_Terms
  synonym: "decreased circulating calcium" EXACT []
+ synonym: "hypocalcemia" EXACT []
+ synonym: "reduced circulating calcium level" EXACT []
  is_a: MP:0001562 ! abnormal circulating calcium level

  [Term]
  id: MP:0000198
! name: decreased circulating phospate level
  alt_id: MP:0001567
  alt_id: MP:0001774
***************
*** 1234,1237 ****
--- 1237,1242 ----
  subset: Europhenome_Terms
  subset: Sanger_Terms
+ synonym: "hypophosphatemia" EXACT []
+ synonym: "reduced circulating phospate level" EXACT []
  is_a: MP:0001565 ! abnormal circulating phosphate level

***************
*** 10496,10500 ****
  name: increased circulating triglyceride level
  alt_id: MP:0005142
! def: "higher than normal concentration of triacylglycerols in the blood" [ISBN:0-683-40008-8]
  subset: Europhenome_Terms
  subset: Sanger_Terms
--- 10501,10505 ----
  name: increased circulating triglyceride level
  alt_id: MP:0005142
! def: "greater concentration of naturally occurring esters of three fatty acids and glycerol in the blood; triglycerides are widespread in adipose tissue, commonly circulate in the blood in the form of lipoproteins, and are involved in the process of bidirectional transference of adipose fat and blood glucose with the liver" [MGI:csmith]
  subset: Europhenome_Terms
  subset: Sanger_Terms
***************
*** 10504,10509 ****
  synonym: "elevated serum triglyceride level" EXACT []
  synonym: "hypertriglyceridemia" RELATED []
- is_a: MP:0003949 ! abnormal circulating lipid level
  is_a: MP:0005317 ! increased triglyceride level

  [Term]
--- 10509,10514 ----
  synonym: "elevated serum triglyceride level" EXACT []
  synonym: "hypertriglyceridemia" RELATED []
  is_a: MP:0005317 ! increased triglyceride level
+ is_a: MP:0011969 ! abnormal circulating triglyceride level

  [Term]
***************
*** 10594,10602 ****
  [Term]
  id: MP:0001566
! name: hyperphosphatemia
  alt_id: MP:0000197
  alt_id: MP:0001773
  def: "abnormally high concentrations of phosphates in the circulating blood" [ISBN:0-683-40008-8]
  subset: Europhenome_Terms
  is_a: MP:0001565 ! abnormal circulating phosphate level

--- 10599,10608 ----
  [Term]
  id: MP:0001566
! name: increased circulating phospate level
  alt_id: MP:0000197
  alt_id: MP:0001773
  def: "abnormally high concentrations of phosphates in the circulating blood" [ISBN:0-683-40008-8]
  subset: Europhenome_Terms
+ synonym: "hyperphosphatemia" EXACT []
  is_a: MP:0001565 ! abnormal circulating phosphate level

***************
*** 18012,18016 ****
  name: decreased circulating triglyceride level
  alt_id: MP:0005143
! def: "lower than normal concentration of triacylglycerols in the blood" [ISBN:0-683-40008-8, MGI:pvb]
  subset: Europhenome_Terms
  subset: Sanger_Terms
--- 18018,18022 ----
  name: decreased circulating triglyceride level
  alt_id: MP:0005143
! def: "reduced concentration of naturally occurring esters of three fatty acids and glycerol in the blood; triglycerides are widespread in adipose tissue, commonly circulate in the blood in the form of lipoproteins, and are involved in the process of bidirectional transference of adipose fat and blood glucose with the liver" [MGI:csmith]
  subset: Europhenome_Terms
  subset: Sanger_Terms
***************
*** 18020,18025 ****
  synonym: "low serum triglyceride level" EXACT []
  synonym: "reduced circulating triglyceride level" EXACT []
- is_a: MP:0003949 ! abnormal circulating lipid level
  is_a: MP:0005318 ! decreased triglyceride level

  [Term]
--- 18026,18031 ----
  synonym: "low serum triglyceride level" EXACT []
  synonym: "reduced circulating triglyceride level" EXACT []
  is_a: MP:0005318 ! decreased triglyceride level
+ is_a: MP:0011969 ! abnormal circulating triglyceride level

  [Term]
***************
*** 20446,20453 ****
  [Term]
  id: MP:0002965
! name: hyperalbuminemia
  def: "blood serum albumin concentration above the normal range" [RGD:cur]
  subset: Europhenome_Terms
  subset: Sanger_Terms
  is_a: MP:0000199 ! abnormal circulating serum albumin level

--- 20452,20460 ----
  [Term]
  id: MP:0002965
! name: increased circulating serum albumin level
  def: "blood serum albumin concentration above the normal range" [RGD:cur]
  subset: Europhenome_Terms
  subset: Sanger_Terms
+ synonym: "hyperalbuminemia" EXACT []
  is_a: MP:0000199 ! abnormal circulating serum albumin level

***************
*** 33148,33157 ****
  [Term]
  id: MP:0004738
! name: abnormal brainstem auditory evoked potential
! def: "anomaly in the electrical activity generated in response to short tone bursts; may be used to evaluate sensorineural hearing function" [MGI:anna, MGI:smb]
  subset: Sanger_Terms
  synonym: "abnormal ABRs" EXACT []
  synonym: "abnormal BAEP(s)" EXACT []
  synonym: "abnormal brainstem auditory brainstem response(s)" EXACT []
  synonym: "abnormal brainstem evoked responses" EXACT []
  is_a: MP:0006335 ! abnormal hearing electrophysiology
--- 33155,33165 ----
  [Term]
  id: MP:0004738
! name: abnormal auditory brainstem response
! def: "anomaly in the electrical activity generated in the ascending auditory system in response to short tone bursts; may be used to evaluate sensorineural hearing function; measurements may include the amplitude (the number of neurons firing), latency (the speed of transmission), interpeak latency (the time between peaks), interaural latency (the difference in wave V latency between ears) and threshold" [MGI:anna, MGI:smb]
  subset: Sanger_Terms
  synonym: "abnormal ABRs" EXACT []
  synonym: "abnormal BAEP(s)" EXACT []
  synonym: "abnormal brainstem auditory brainstem response(s)" EXACT []
+ synonym: "abnormal brainstem auditory evoked potential" EXACT []
  synonym: "abnormal brainstem evoked responses" EXACT []
  is_a: MP:0006335 ! abnormal hearing electrophysiology
***************
*** 33333,33346 ****

  [Term]
- id: MP:0004763
- name: absent brainstem auditory evoked potential
- def: "absence of the synchronous electrical activity generated by neurons in the ascending auditory system that can be recorded from scalp electrograms by using computer-averaged responses to short tone bursts; by varying frequency, cochlear function can be assessed throughout the hearing range; normally, ABR thresholds vary with frequency, from a sound pressure level (SPL) of 35 dB at 5.6 kHz (a relatively low frequency for a mouse) to 15 dB at 45.2 kHz (a relatively high frequency); each 20 dB corresponds to a tenfold change in amplitude" [MGI:anna]
- synonym: "absent ABRs" EXACT []
- synonym: "absent BAEP(s)" EXACT []
- synonym: "absent brainstem auditory brainstem response(s)" EXACT []
- synonym: "absent brainstem evoked responses" EXACT []
- is_a: MP:0004738 ! abnormal brainstem auditory evoked potential
- 
- [Term]
  id: MP:0004764
  name: increased brainstem auditory evoked potential
--- 33341,33344 ----
***************
*** 33352,33356 ****
  synonym: "increased brainstem auditory brainstem response(s)" EXACT []
  synonym: "increased brainstem evoked responses" EXACT []
! is_a: MP:0004738 ! abnormal brainstem auditory evoked potential

  [Term]
--- 33350,33354 ----
  synonym: "increased brainstem auditory brainstem response(s)" EXACT []
  synonym: "increased brainstem evoked responses" EXACT []
! is_a: MP:0004738 ! abnormal auditory brainstem response

  [Term]
***************
*** 33367,33371 ****
  synonym: "reduced BAEP(s)" EXACT []
  synonym: "reduced brainstem auditory evoked potential" EXACT []
! is_a: MP:0004738 ! abnormal brainstem auditory evoked potential

  [Term]
--- 33365,33369 ----
  synonym: "reduced BAEP(s)" EXACT []
  synonym: "reduced brainstem auditory evoked potential" EXACT []
! is_a: MP:0004738 ! abnormal auditory brainstem response

  [Term]
***************
*** 37706,37710 ****
  id: MP:0005317
  name: increased triglyceride level
! def: "higher than normal concentration of triacylglycerols" [ISBN:0-683-40008-8]
  synonym: "elevated triglyceride level" EXACT []
  is_a: MP:0000187 ! abnormal triglyceride level
--- 37704,37708 ----
  id: MP:0005317
  name: increased triglyceride level
! def: "greater concentration of naturally occurring esters of three fatty acids and glycerol; triglycerides are widespread in adipose tissue, commonly circulate in the blood in the form of lipoproteins, and are involved in the process of bidirectional transference of adipose fat and blood glucose with the liver" [MGI:csmith]
  synonym: "elevated triglyceride level" EXACT []
  is_a: MP:0000187 ! abnormal triglyceride level
***************
*** 37713,37717 ****
  id: MP:0005318
  name: decreased triglyceride level
! def: "lower than normal concentration of triacylglycerols" [ISBN:0-683-40008-8]
  synonym: "low triglyceride level" EXACT []
  synonym: "reduced triglyceride level" EXACT []
--- 37711,37715 ----
  id: MP:0005318
  name: decreased triglyceride level
! def: "reduced concentration of naturally occurring esters of three fatty acids and glycerol in the blood; triglycerides are widespread in adipose tissue, commonly circulate in the blood in the form of lipoproteins, and are involved in the process of bidirectional transference of adipose fat and blood glucose with the liver" [MGI:csmith]
  synonym: "low triglyceride level" EXACT []
  synonym: "reduced triglyceride level" EXACT []
***************
*** 38379,38386 ****
  [Term]
  id: MP:0005419
! name: hypoalbuminemia
  def: "blood serum albumin concentration below the normal range" [MGI:csmith]
  subset: Europhenome_Terms
  subset: Sanger_Terms
  is_a: MP:0000199 ! abnormal circulating serum albumin level

--- 38377,38386 ----
  [Term]
  id: MP:0005419
! name: decreased circulating serum albumin level
  def: "blood serum albumin concentration below the normal range" [MGI:csmith]
  subset: Europhenome_Terms
  subset: Sanger_Terms
+ synonym: "hypoalbuminemia" EXACT []
+ synonym: "reduced circulating serum albumin level" EXACT []
  is_a: MP:0000199 ! abnormal circulating serum albumin level

***************
*** 42009,42013 ****
  [Term]
  id: MP:0006248
! name: lagopthalmos
  def: "inability to completely close the eye" [MGI:smb, NCBI:matt]
  is_a: MP:0005253 ! abnormal eye physiology
--- 42009,42013 ----
  [Term]
  id: MP:0006248
! name: lagophthalmos
  def: "inability to completely close the eye" [MGI:smb, NCBI:matt]
  is_a: MP:0005253 ! abnormal eye physiology
***************
*** 55584,55588 ****
  id: MP:0009355
  name: increased liver triglyceride level
! def: "higher than normal concentration of triacylglycerols in the liver" [MGI:smb]
  synonym: "increased hepatic triglyceride level" EXACT []
  is_a: MP:0000598 ! abnormal liver morphology
--- 55584,55588 ----
  id: MP:0009355
  name: increased liver triglyceride level
! def: "greater concentration of naturally occurring esters of three fatty acids and glycerol in the liver; triglycerides are widespread in adipose tissue, commonly circulate in the blood in the form of lipoproteins, and are involved in the process of bidirectional transference of adipose fat and blood glucose with the liver" [MGI:csmith]
  synonym: "increased hepatic triglyceride level" EXACT []
  is_a: MP:0000598 ! abnormal liver morphology
***************
*** 55592,55596 ****
  id: MP:0009356
  name: decreased liver triglyceride level
! def: "lower than normal concentration of triacylglycerols in the liver" [MGI:smb]
  synonym: "decreased hepatic triglyceride level" EXACT []
  synonym: "reduced hepatic triglyceride level" EXACT []
--- 55592,55596 ----
  id: MP:0009356
  name: decreased liver triglyceride level
! def: "reduced concentration of naturally occurring esters of three fatty acids and glycerol in the liver; triglycerides are widespread in adipose tissue, commonly circulate in the blood in the form of lipoproteins, and are involved in the process of bidirectional transference of adipose fat and blood glucose with the liverower than normal concentration of triacylglycerols in the liver" [MGI:csmith]
  synonym: "decreased hepatic triglyceride level" EXACT []
  synonym: "reduced hepatic triglyceride level" EXACT []
***************
*** 81013,81016 ****
--- 81013,81054 ----
  creation_date: 2013-03-15T15:04:09Z

+ [Term]
+ id: MP:0011966
+ name: abnormal auditory brainstem response waveform shape
+ def: "any anomaly in the characteristic pattern of electrical activity recording of a series of vertex positive waves generated by neurons in the ascending auditory system, that can be recorded from scalp electrograms by using computer-averaged responses to short tone bursts" [MGI:csmith]
+ is_a: MP:0004738 ! abnormal auditory brainstem response
+ created_by: csmith
+ creation_date: 2013-04-04T12:51:28Z
+ 
+ [Term]
+ id: MP:0011967
+ name:  increased or absent threshold for auditory brainstem response 
+ alt_id: MP:0004763
+ def: "increase in the value at which one or more sound frequencies or broadband clicks first elicits a recordable response generated by electrical activity of neurons in the ascending auditory system, or complete lack of a recordable response at any frequency or broadband click" [MGI:csmith]
+ synonym: "absent ABRs" EXACT []
+ synonym: "absent BAEP(s)" EXACT []
+ synonym: "absent brainstem auditory brainstem response(s)" EXACT []
+ synonym: "absent brainstem auditory evoked potential" EXACT []
+ synonym: "absent brainstem evoked responses" EXACT []
+ is_a: MP:0004738 ! abnormal auditory brainstem response
+ created_by: csmith
+ creation_date: 2013-04-04T12:52:39Z
+ 
+ [Term]
+ id: MP:0011968
+ name: decreased threshold for auditory brainstem response
+ def: "reduction in the value at which one or more sound frequencies or broadband clicks first elicits a recordable response generated by electrical activity of neurons in the ascending auditory system" [MGI:csmith]
+ is_a: MP:0004738 ! abnormal auditory brainstem response
+ created_by: csmith
+ creation_date: 2013-04-04T12:52:59Z
+ 
+ [Term]
+ id: MP:0011969
+ name: abnormal circulating triglyceride level
+ def: "abnormal concentration of naturally occurring esters of three fatty acids and glycerol in the blood; triglycerides are widespread in adipose tissue, commonly circulate in the blood in the form of lipoproteins, and are involved in the process of bidirectional transference of adipose fat and blood glucose with the liver" [MGI:csmith]
+ is_a: MP:0003949 ! abnormal circulating lipid level
+ created_by: csmith
+ creation_date: 2013-04-04T16:10:51Z
+ 
  [Typedef]
  id: part_of