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[Obo-svn-commit] SF.net SVN: obo:[4557] uberon/trunk/bridge
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From: <cmu...@us...> - 2012-09-22 00:26:41
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Revision: 4557
http://obo.svn.sourceforge.net/obo/?rev=4557&view=rev
Author: cmungall
Date: 2012-09-22 00:26:34 +0000 (Sat, 22 Sep 2012)
Log Message:
-----------
Modified Paths:
--------------
uberon/trunk/bridge/collected-adult-mammal.owl
uberon/trunk/bridge/collected-amniote.owl
uberon/trunk/bridge/collected-embryonic-mammal.owl
uberon/trunk/bridge/collected-eukaryote.owl
uberon/trunk/bridge/collected-mammal.owl
uberon/trunk/bridge/collected-metazoa.owl
uberon/trunk/bridge/collected-opisthokont.owl
uberon/trunk/bridge/collected-tetrapod.owl
uberon/trunk/bridge/collected-vertebrate.owl
uberon/trunk/bridge/uberon-bridge-to-fbbt.obo
uberon/trunk/bridge/uberon-bridge-to-fbbt.owl
uberon/trunk/bridge/uberon-bridge-to-vhog.owl
Modified: uberon/trunk/bridge/collected-adult-mammal.owl
===================================================================
--- uberon/trunk/bridge/collected-adult-mammal.owl 2012-09-21 23:59:04 UTC (rev 4556)
+++ uberon/trunk/bridge/collected-adult-mammal.owl 2012-09-22 00:26:34 UTC (rev 4557)
@@ -10,6 +10,8 @@
<foaf:homepage rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://uberon.org</foaf:homepage>
<rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://uberon.org#Multi-species_Collector_Modules</rdfs:seeAlso>
<rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://genomebiology.com/2012/13/1/R5</rdfs:seeAlso>
+ <dc:subject rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_40674"/>
+ <dc:subject rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000092"/>
<dc:creator xml:lang="en">Uberon editors</dc:creator>
<dc:title xml:lang="en">Uberon importer for post-natal mammalian structures</dc:title>
<dc:description xml:lang="en">
@@ -25,8 +27,11 @@
homepage for details.
</rdfs:comment>
<owl:imports rdf:resource="http://purl.obolibrary.org/obo/uberon.owl"/>
+ <owl:imports rdf:resource="http://purl.obolibrary.org/obo/cl.owl"/>
<owl:imports rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-ma.owl"/>
<owl:imports rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-fma.owl"/>
+ <owl:imports rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-ma.owl"/>
+ <owl:imports rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-fma.owl"/>
<owl:imports rdf:resource="http://purl.obolibrary.org/obo/ma.owl"/>
<owl:imports rdf:resource="http://purl.obolibrary.org/obo/fma.owl"/>
</owl:Ontology>
Modified: uberon/trunk/bridge/collected-amniote.owl
===================================================================
--- uberon/trunk/bridge/collected-amniote.owl 2012-09-21 23:59:04 UTC (rev 4556)
+++ uberon/trunk/bridge/collected-amniote.owl 2012-09-22 00:26:34 UTC (rev 4557)
@@ -10,6 +10,7 @@
<foaf:homepage rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://uberon.org</foaf:homepage>
<rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://uberon.org#Multi-species_Collector_Modules</rdfs:seeAlso>
<rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://genomebiology.com/2012/13/1/R5</rdfs:seeAlso>
+ <dc:subject rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_32524"/>
<dc:creator xml:lang="en">Uberon editors</dc:creator>
<dc:title xml:lang="en">Uberon importer for amniote structures</dc:title>
<dc:description xml:lang="en">
Modified: uberon/trunk/bridge/collected-embryonic-mammal.owl
===================================================================
--- uberon/trunk/bridge/collected-embryonic-mammal.owl 2012-09-21 23:59:04 UTC (rev 4556)
+++ uberon/trunk/bridge/collected-embryonic-mammal.owl 2012-09-22 00:26:34 UTC (rev 4557)
@@ -10,6 +10,8 @@
<foaf:homepage rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://uberon.org</foaf:homepage>
<rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://uberon.org#Multi-species_Collector_Modules</rdfs:seeAlso>
<rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://genomebiology.com/2012/13/1/R5</rdfs:seeAlso>
+ <dc:subject rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_40674"/>
+ <dc:subject rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000068"/>
<dc:creator xml:lang="en">Uberon editors</dc:creator>
<dc:title xml:lang="en">Uberon importer for embryonic mammal structures</dc:title>
<dc:description xml:lang="en">
@@ -28,8 +30,11 @@
homepage for details.
</rdfs:comment>
<owl:imports rdf:resource="http://purl.obolibrary.org/obo/uberon.owl"/>
+ <owl:imports rdf:resource="http://purl.obolibrary.org/obo/cl.owl"/>
<owl:imports rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-ehdaa2.owl"/>
<owl:imports rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-emapa.owl"/>
+ <owl:imports rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-ehdaa2.owl"/>
+ <owl:imports rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-emapa.owl"/>
<owl:imports rdf:resource="http://purl.obolibrary.org/obo/ehdaa2.owl"/>
<owl:imports rdf:resource="http://purl.obolibrary.org/obo/emapa.owl"/>
</owl:Ontology>
Modified: uberon/trunk/bridge/collected-eukaryote.owl
===================================================================
--- uberon/trunk/bridge/collected-eukaryote.owl 2012-09-21 23:59:04 UTC (rev 4556)
+++ uberon/trunk/bridge/collected-eukaryote.owl 2012-09-22 00:26:34 UTC (rev 4557)
@@ -10,8 +10,9 @@
<foaf:homepage rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://uberon.org</foaf:homepage>
<rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://uberon.org#Multi-species_Collector_Modules</rdfs:seeAlso>
<rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://genomebiology.com/2012/13/1/R5</rdfs:seeAlso>
+ <dc:subject rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_2759"/>
<dc:creator xml:lang="en">Uberon editors</dc:creator>
- <dc:title xml:lang="en">Uberon importer for animals and fungi (opisthokont) structures</dc:title>
+ <dc:title xml:lang="en">Uberon importer for eukaryote structures</dc:title>
<dc:description xml:lang="en">
This is an ontology that collects all of the core uberon, plus
ALL gross anatomical ontologies for eukaryotes. This is the root
Modified: uberon/trunk/bridge/collected-mammal.owl
===================================================================
--- uberon/trunk/bridge/collected-mammal.owl 2012-09-21 23:59:04 UTC (rev 4556)
+++ uberon/trunk/bridge/collected-mammal.owl 2012-09-22 00:26:34 UTC (rev 4557)
@@ -10,6 +10,7 @@
<foaf:homepage rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://uberon.org</foaf:homepage>
<rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://uberon.org#Multi-species_Collector_Modules</rdfs:seeAlso>
<rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://genomebiology.com/2012/13/1/R5</rdfs:seeAlso>
+ <dc:subject rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_40674"/>
<dc:creator xml:lang="en">Uberon editors</dc:creator>
<dc:title xml:lang="en">Uberon importer for embryonic mammal structures</dc:title>
<dc:description xml:lang="en">
Modified: uberon/trunk/bridge/collected-metazoa.owl
===================================================================
--- uberon/trunk/bridge/collected-metazoa.owl 2012-09-21 23:59:04 UTC (rev 4556)
+++ uberon/trunk/bridge/collected-metazoa.owl 2012-09-22 00:26:34 UTC (rev 4557)
@@ -10,8 +10,9 @@
<foaf:homepage rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://uberon.org</foaf:homepage>
<rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://uberon.org#Multi-species_Collector_Modules</rdfs:seeAlso>
<rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://genomebiology.com/2012/13/1/R5</rdfs:seeAlso>
+ <dc:subject rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_33208"/>
<dc:creator xml:lang="en">Uberon editors</dc:creator>
- <dc:title xml:lang="en">Uberon importer for embryonic mammal structures</dc:title>
+ <dc:title xml:lang="en">Uberon importer for metazoan structures</dc:title>
<dc:description xml:lang="en">
This is an ontology that collects all of the core uberon, plus
ALL gross anatomical ontologies for metazoans.
@@ -26,7 +27,11 @@
homepage for details.
</rdfs:comment>
<owl:imports rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/collected-vertebrate.owl"/>
- <owl:imports rdf:resource="http://purl.obolibrary.org/obo/fbbt.owl"/>
+ <owl:imports rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-fbbt.owl"/>
+ <owl:imports rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-wbbt.owl"/>
+ <owl:imports rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-fbbt.owl"/>
+ <owl:imports rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-wbbt.owl"/>
+ <owl:imports rdf:resource="http://purl.obolibrary.org/obo/uberon/fbbt-nd.owl"/>
<owl:imports rdf:resource="http://purl.obolibrary.org/obo/wbbt.owl"/>
<owl:imports rdf:resource="http://purl.obolibrary.org/obo/wbls.owl"/>
</owl:Ontology>
Modified: uberon/trunk/bridge/collected-opisthokont.owl
===================================================================
--- uberon/trunk/bridge/collected-opisthokont.owl 2012-09-21 23:59:04 UTC (rev 4556)
+++ uberon/trunk/bridge/collected-opisthokont.owl 2012-09-22 00:26:34 UTC (rev 4557)
@@ -10,6 +10,7 @@
<foaf:homepage rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://uberon.org</foaf:homepage>
<rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://uberon.org#Multi-species_Collector_Modules</rdfs:seeAlso>
<rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://genomebiology.com/2012/13/1/R5</rdfs:seeAlso>
+ <dc:subject rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_33154"/>
<dc:creator xml:lang="en">Uberon editors</dc:creator>
<dc:title xml:lang="en">Uberon importer for embryonic mammal structures</dc:title>
<dc:description xml:lang="en">
Modified: uberon/trunk/bridge/collected-tetrapod.owl
===================================================================
--- uberon/trunk/bridge/collected-tetrapod.owl 2012-09-21 23:59:04 UTC (rev 4556)
+++ uberon/trunk/bridge/collected-tetrapod.owl 2012-09-22 00:26:34 UTC (rev 4557)
@@ -7,10 +7,30 @@
xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
>
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/bridge/collected-tetrapod.owl">
- <owl:imports rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/collected-mammal.owl"/>
+ <foaf:homepage rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://uberon.org</foaf:homepage>
+ <rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://uberon.org#Multi-species_Collector_Modules</rdfs:seeAlso>
+ <rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://genomebiology.com/2012/13/1/R5</rdfs:seeAlso>
+ <dc:subject rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_32523"/>
+ <dc:creator xml:lang="en">Uberon editors</dc:creator>
+ <dc:title xml:lang="en">Uberon importer for tetrapod structures</dc:title>
+ <dc:description xml:lang="en">
+ This is an ontology that collects all of the core uberon, plus
+ any tetrapod species-specific ontologies.
+ </dc:description>
+ <rdfs:comment xml:lang="en">
+ Uberon ontologies with the prefix 'collected' are ontologies
+ that import the core Uberon ontology together with one or more
+ external typically species-centric ontologies plus *bridging*
+ axioms that connect Uberon to the species-centric
+ ontology. Bridging axioms may be direct equivalence axioms,
+ taxonomic equivalence axioms, or subclass axioms. See the Uberon
+ homepage for details.
+ </rdfs:comment>
+ <owl:imports rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/collected-amniote.owl"/>
<owl:imports rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-aao.owl"/>
- <owl:imports rdf:resource="http://purl.obolibrary.org/obo/aao.owl"/>
<owl:imports rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-xao.owl"/>
+ <owl:imports rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-xao.owl"/>
+ <!-- <owl:imports rdf:resource="http://purl.obolibrary.org/obo/uberon/phenoscape-ext.owl"/> -->
<owl:imports rdf:resource="http://purl.obolibrary.org/obo/xao.owl"/>
</owl:Ontology>
</rdf:RDF>
Modified: uberon/trunk/bridge/collected-vertebrate.owl
===================================================================
--- uberon/trunk/bridge/collected-vertebrate.owl 2012-09-21 23:59:04 UTC (rev 4556)
+++ uberon/trunk/bridge/collected-vertebrate.owl 2012-09-22 00:26:34 UTC (rev 4557)
@@ -10,6 +10,7 @@
<foaf:homepage rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://uberon.org</foaf:homepage>
<rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://uberon.org#Multi-species_Collector_Modules</rdfs:seeAlso>
<rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://genomebiology.com/2012/13/1/R5</rdfs:seeAlso>
+ <dc:subject rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_7742"/>
<dc:creator xml:lang="en">Uberon editors</dc:creator>
<dc:title xml:lang="en">Uberon importer for vertebrate structures</dc:title>
<dc:description xml:lang="en">
Modified: uberon/trunk/bridge/uberon-bridge-to-fbbt.obo
===================================================================
--- uberon/trunk/bridge/uberon-bridge-to-fbbt.obo 2012-09-21 23:59:04 UTC (rev 4556)
+++ uberon/trunk/bridge/uberon-bridge-to-fbbt.obo 2012-09-22 00:26:34 UTC (rev 4557)
@@ -355,12 +355,6 @@
intersection_of: part_of NCBITaxon:7227
[Term]
-id: FBbt:00004826 ! genitalia
-property_value: IAO:0000589 "reproductive system (drosophila)" xsd:string
-intersection_of: UBERON:0000990 ! reproductive system
-intersection_of: part_of NCBITaxon:7227
-
-[Term]
id: FBbt:00004857 ! reproductive system
property_value: IAO:0000589 "reproductive system (drosophila)" xsd:string
intersection_of: UBERON:0000990 ! reproductive system
Modified: uberon/trunk/bridge/uberon-bridge-to-fbbt.owl
===================================================================
--- uberon/trunk/bridge/uberon-bridge-to-fbbt.owl 2012-09-21 23:59:04 UTC (rev 4556)
+++ uberon/trunk/bridge/uberon-bridge-to-fbbt.owl 2012-09-22 00:26:34 UTC (rev 4557)
@@ -1170,26 +1170,6 @@
- <!-- http://purl.obolibrary.org/obo/FBbt_00004826 -->
-
- <owl:Class rdf:about="http://purl.obolibrary.org/obo/FBbt_00004826">
- <owl:equivalentClass>
- <owl:Class>
- <owl:intersectionOf rdf:parseType="Collection">
- <rdf:Description rdf:about="http://purl.obolibrary.org/obo/UBERON_0000990"/>
- <owl:Restriction>
- <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
- <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_7227"/>
- </owl:Restriction>
- </owl:intersectionOf>
- </owl:Class>
- </owl:equivalentClass>
- <oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">FBbt:00004826</oboInOwl:id>
- <obo:IAO_0000589 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">reproductive system (drosophila)</obo:IAO_0000589>
- </owl:Class>
-
-
-
<!-- http://purl.obolibrary.org/obo/FBbt_00004850 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/FBbt_00004850">
Modified: uberon/trunk/bridge/uberon-bridge-to-vhog.owl
===================================================================
--- uberon/trunk/bridge/uberon-bridge-to-vhog.owl 2012-09-21 23:59:04 UTC (rev 4556)
+++ uberon/trunk/bridge/uberon-bridge-to-vhog.owl 2012-09-22 00:26:34 UTC (rev 4557)
@@ -11168,13 +11168,13 @@
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0002156"/>
- <owl:hasValue rdf:resource="http://purl.obolibrary.org/obo/VHOG_0000968"/>
+ <owl:hasValue rdf:resource="http://purl.obolibrary.org/obo/VHOG_0000577"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0002156"/>
- <owl:hasValue rdf:resource="http://purl.obolibrary.org/obo/VHOG_0000577"/>
+ <owl:hasValue rdf:resource="http://purl.obolibrary.org/obo/VHOG_0000968"/>
</owl:Restriction>
</rdfs:subClassOf>
</owl:Class>
@@ -12246,13 +12246,13 @@
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0002156"/>
- <owl:hasValue rdf:resource="http://purl.obolibrary.org/obo/VHOG_0000561"/>
+ <owl:hasValue rdf:resource="http://purl.obolibrary.org/obo/VHOG_0000967"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0002156"/>
- <owl:hasValue rdf:resource="http://purl.obolibrary.org/obo/VHOG_0000967"/>
+ <owl:hasValue rdf:resource="http://purl.obolibrary.org/obo/VHOG_0000561"/>
</owl:Restriction>
</rdfs:subClassOf>
</owl:Class>
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