From: <cmu...@us...> - 2012-09-22 00:26:41
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Revision: 4557 http://obo.svn.sourceforge.net/obo/?rev=4557&view=rev Author: cmungall Date: 2012-09-22 00:26:34 +0000 (Sat, 22 Sep 2012) Log Message: ----------- Modified Paths: -------------- uberon/trunk/bridge/collected-adult-mammal.owl uberon/trunk/bridge/collected-amniote.owl uberon/trunk/bridge/collected-embryonic-mammal.owl uberon/trunk/bridge/collected-eukaryote.owl uberon/trunk/bridge/collected-mammal.owl uberon/trunk/bridge/collected-metazoa.owl uberon/trunk/bridge/collected-opisthokont.owl uberon/trunk/bridge/collected-tetrapod.owl uberon/trunk/bridge/collected-vertebrate.owl uberon/trunk/bridge/uberon-bridge-to-fbbt.obo uberon/trunk/bridge/uberon-bridge-to-fbbt.owl uberon/trunk/bridge/uberon-bridge-to-vhog.owl Modified: uberon/trunk/bridge/collected-adult-mammal.owl =================================================================== --- uberon/trunk/bridge/collected-adult-mammal.owl 2012-09-21 23:59:04 UTC (rev 4556) +++ uberon/trunk/bridge/collected-adult-mammal.owl 2012-09-22 00:26:34 UTC (rev 4557) @@ -10,6 +10,8 @@ <foaf:homepage rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://uberon.org</foaf:homepage> <rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://uberon.org#Multi-species_Collector_Modules</rdfs:seeAlso> <rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://genomebiology.com/2012/13/1/R5</rdfs:seeAlso> + <dc:subject rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_40674"/> + <dc:subject rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000092"/> <dc:creator xml:lang="en">Uberon editors</dc:creator> <dc:title xml:lang="en">Uberon importer for post-natal mammalian structures</dc:title> <dc:description xml:lang="en"> @@ -25,8 +27,11 @@ homepage for details. </rdfs:comment> <owl:imports rdf:resource="http://purl.obolibrary.org/obo/uberon.owl"/> + <owl:imports rdf:resource="http://purl.obolibrary.org/obo/cl.owl"/> <owl:imports rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-ma.owl"/> <owl:imports rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-fma.owl"/> + <owl:imports rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-ma.owl"/> + <owl:imports rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-fma.owl"/> <owl:imports rdf:resource="http://purl.obolibrary.org/obo/ma.owl"/> <owl:imports rdf:resource="http://purl.obolibrary.org/obo/fma.owl"/> </owl:Ontology> Modified: uberon/trunk/bridge/collected-amniote.owl =================================================================== --- uberon/trunk/bridge/collected-amniote.owl 2012-09-21 23:59:04 UTC (rev 4556) +++ uberon/trunk/bridge/collected-amniote.owl 2012-09-22 00:26:34 UTC (rev 4557) @@ -10,6 +10,7 @@ <foaf:homepage rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://uberon.org</foaf:homepage> <rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://uberon.org#Multi-species_Collector_Modules</rdfs:seeAlso> <rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://genomebiology.com/2012/13/1/R5</rdfs:seeAlso> + <dc:subject rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_32524"/> <dc:creator xml:lang="en">Uberon editors</dc:creator> <dc:title xml:lang="en">Uberon importer for amniote structures</dc:title> <dc:description xml:lang="en"> Modified: uberon/trunk/bridge/collected-embryonic-mammal.owl =================================================================== --- uberon/trunk/bridge/collected-embryonic-mammal.owl 2012-09-21 23:59:04 UTC (rev 4556) +++ uberon/trunk/bridge/collected-embryonic-mammal.owl 2012-09-22 00:26:34 UTC (rev 4557) @@ -10,6 +10,8 @@ <foaf:homepage rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://uberon.org</foaf:homepage> <rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://uberon.org#Multi-species_Collector_Modules</rdfs:seeAlso> <rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://genomebiology.com/2012/13/1/R5</rdfs:seeAlso> + <dc:subject rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_40674"/> + <dc:subject rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000068"/> <dc:creator xml:lang="en">Uberon editors</dc:creator> <dc:title xml:lang="en">Uberon importer for embryonic mammal structures</dc:title> <dc:description xml:lang="en"> @@ -28,8 +30,11 @@ homepage for details. </rdfs:comment> <owl:imports rdf:resource="http://purl.obolibrary.org/obo/uberon.owl"/> + <owl:imports rdf:resource="http://purl.obolibrary.org/obo/cl.owl"/> <owl:imports rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-ehdaa2.owl"/> <owl:imports rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-emapa.owl"/> + <owl:imports rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-ehdaa2.owl"/> + <owl:imports rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-emapa.owl"/> <owl:imports rdf:resource="http://purl.obolibrary.org/obo/ehdaa2.owl"/> <owl:imports rdf:resource="http://purl.obolibrary.org/obo/emapa.owl"/> </owl:Ontology> Modified: uberon/trunk/bridge/collected-eukaryote.owl =================================================================== --- uberon/trunk/bridge/collected-eukaryote.owl 2012-09-21 23:59:04 UTC (rev 4556) +++ uberon/trunk/bridge/collected-eukaryote.owl 2012-09-22 00:26:34 UTC (rev 4557) @@ -10,8 +10,9 @@ <foaf:homepage rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://uberon.org</foaf:homepage> <rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://uberon.org#Multi-species_Collector_Modules</rdfs:seeAlso> <rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://genomebiology.com/2012/13/1/R5</rdfs:seeAlso> + <dc:subject rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_2759"/> <dc:creator xml:lang="en">Uberon editors</dc:creator> - <dc:title xml:lang="en">Uberon importer for animals and fungi (opisthokont) structures</dc:title> + <dc:title xml:lang="en">Uberon importer for eukaryote structures</dc:title> <dc:description xml:lang="en"> This is an ontology that collects all of the core uberon, plus ALL gross anatomical ontologies for eukaryotes. This is the root Modified: uberon/trunk/bridge/collected-mammal.owl =================================================================== --- uberon/trunk/bridge/collected-mammal.owl 2012-09-21 23:59:04 UTC (rev 4556) +++ uberon/trunk/bridge/collected-mammal.owl 2012-09-22 00:26:34 UTC (rev 4557) @@ -10,6 +10,7 @@ <foaf:homepage rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://uberon.org</foaf:homepage> <rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://uberon.org#Multi-species_Collector_Modules</rdfs:seeAlso> <rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://genomebiology.com/2012/13/1/R5</rdfs:seeAlso> + <dc:subject rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_40674"/> <dc:creator xml:lang="en">Uberon editors</dc:creator> <dc:title xml:lang="en">Uberon importer for embryonic mammal structures</dc:title> <dc:description xml:lang="en"> Modified: uberon/trunk/bridge/collected-metazoa.owl =================================================================== --- uberon/trunk/bridge/collected-metazoa.owl 2012-09-21 23:59:04 UTC (rev 4556) +++ uberon/trunk/bridge/collected-metazoa.owl 2012-09-22 00:26:34 UTC (rev 4557) @@ -10,8 +10,9 @@ <foaf:homepage rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://uberon.org</foaf:homepage> <rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://uberon.org#Multi-species_Collector_Modules</rdfs:seeAlso> <rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://genomebiology.com/2012/13/1/R5</rdfs:seeAlso> + <dc:subject rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_33208"/> <dc:creator xml:lang="en">Uberon editors</dc:creator> - <dc:title xml:lang="en">Uberon importer for embryonic mammal structures</dc:title> + <dc:title xml:lang="en">Uberon importer for metazoan structures</dc:title> <dc:description xml:lang="en"> This is an ontology that collects all of the core uberon, plus ALL gross anatomical ontologies for metazoans. @@ -26,7 +27,11 @@ homepage for details. </rdfs:comment> <owl:imports rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/collected-vertebrate.owl"/> - <owl:imports rdf:resource="http://purl.obolibrary.org/obo/fbbt.owl"/> + <owl:imports rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-fbbt.owl"/> + <owl:imports rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-wbbt.owl"/> + <owl:imports rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-fbbt.owl"/> + <owl:imports rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-wbbt.owl"/> + <owl:imports rdf:resource="http://purl.obolibrary.org/obo/uberon/fbbt-nd.owl"/> <owl:imports rdf:resource="http://purl.obolibrary.org/obo/wbbt.owl"/> <owl:imports rdf:resource="http://purl.obolibrary.org/obo/wbls.owl"/> </owl:Ontology> Modified: uberon/trunk/bridge/collected-opisthokont.owl =================================================================== --- uberon/trunk/bridge/collected-opisthokont.owl 2012-09-21 23:59:04 UTC (rev 4556) +++ uberon/trunk/bridge/collected-opisthokont.owl 2012-09-22 00:26:34 UTC (rev 4557) @@ -10,6 +10,7 @@ <foaf:homepage rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://uberon.org</foaf:homepage> <rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://uberon.org#Multi-species_Collector_Modules</rdfs:seeAlso> <rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://genomebiology.com/2012/13/1/R5</rdfs:seeAlso> + <dc:subject rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_33154"/> <dc:creator xml:lang="en">Uberon editors</dc:creator> <dc:title xml:lang="en">Uberon importer for embryonic mammal structures</dc:title> <dc:description xml:lang="en"> Modified: uberon/trunk/bridge/collected-tetrapod.owl =================================================================== --- uberon/trunk/bridge/collected-tetrapod.owl 2012-09-21 23:59:04 UTC (rev 4556) +++ uberon/trunk/bridge/collected-tetrapod.owl 2012-09-22 00:26:34 UTC (rev 4557) @@ -7,10 +7,30 @@ xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" > <owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/bridge/collected-tetrapod.owl"> - <owl:imports rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/collected-mammal.owl"/> + <foaf:homepage rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://uberon.org</foaf:homepage> + <rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://uberon.org#Multi-species_Collector_Modules</rdfs:seeAlso> + <rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://genomebiology.com/2012/13/1/R5</rdfs:seeAlso> + <dc:subject rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_32523"/> + <dc:creator xml:lang="en">Uberon editors</dc:creator> + <dc:title xml:lang="en">Uberon importer for tetrapod structures</dc:title> + <dc:description xml:lang="en"> + This is an ontology that collects all of the core uberon, plus + any tetrapod species-specific ontologies. + </dc:description> + <rdfs:comment xml:lang="en"> + Uberon ontologies with the prefix 'collected' are ontologies + that import the core Uberon ontology together with one or more + external typically species-centric ontologies plus *bridging* + axioms that connect Uberon to the species-centric + ontology. Bridging axioms may be direct equivalence axioms, + taxonomic equivalence axioms, or subclass axioms. See the Uberon + homepage for details. + </rdfs:comment> + <owl:imports rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/collected-amniote.owl"/> <owl:imports rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-aao.owl"/> - <owl:imports rdf:resource="http://purl.obolibrary.org/obo/aao.owl"/> <owl:imports rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-xao.owl"/> + <owl:imports rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-xao.owl"/> + <!-- <owl:imports rdf:resource="http://purl.obolibrary.org/obo/uberon/phenoscape-ext.owl"/> --> <owl:imports rdf:resource="http://purl.obolibrary.org/obo/xao.owl"/> </owl:Ontology> </rdf:RDF> Modified: uberon/trunk/bridge/collected-vertebrate.owl =================================================================== --- uberon/trunk/bridge/collected-vertebrate.owl 2012-09-21 23:59:04 UTC (rev 4556) +++ uberon/trunk/bridge/collected-vertebrate.owl 2012-09-22 00:26:34 UTC (rev 4557) @@ -10,6 +10,7 @@ <foaf:homepage rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://uberon.org</foaf:homepage> <rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://uberon.org#Multi-species_Collector_Modules</rdfs:seeAlso> <rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://genomebiology.com/2012/13/1/R5</rdfs:seeAlso> + <dc:subject rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_7742"/> <dc:creator xml:lang="en">Uberon editors</dc:creator> <dc:title xml:lang="en">Uberon importer for vertebrate structures</dc:title> <dc:description xml:lang="en"> Modified: uberon/trunk/bridge/uberon-bridge-to-fbbt.obo =================================================================== --- uberon/trunk/bridge/uberon-bridge-to-fbbt.obo 2012-09-21 23:59:04 UTC (rev 4556) +++ uberon/trunk/bridge/uberon-bridge-to-fbbt.obo 2012-09-22 00:26:34 UTC (rev 4557) @@ -355,12 +355,6 @@ intersection_of: part_of NCBITaxon:7227 [Term] -id: FBbt:00004826 ! genitalia -property_value: IAO:0000589 "reproductive system (drosophila)" xsd:string -intersection_of: UBERON:0000990 ! reproductive system -intersection_of: part_of NCBITaxon:7227 - -[Term] id: FBbt:00004857 ! reproductive system property_value: IAO:0000589 "reproductive system (drosophila)" xsd:string intersection_of: UBERON:0000990 ! reproductive system Modified: uberon/trunk/bridge/uberon-bridge-to-fbbt.owl =================================================================== --- uberon/trunk/bridge/uberon-bridge-to-fbbt.owl 2012-09-21 23:59:04 UTC (rev 4556) +++ uberon/trunk/bridge/uberon-bridge-to-fbbt.owl 2012-09-22 00:26:34 UTC (rev 4557) @@ -1170,26 +1170,6 @@ - <!-- http://purl.obolibrary.org/obo/FBbt_00004826 --> - - <owl:Class rdf:about="http://purl.obolibrary.org/obo/FBbt_00004826"> - <owl:equivalentClass> - <owl:Class> - <owl:intersectionOf rdf:parseType="Collection"> - <rdf:Description rdf:about="http://purl.obolibrary.org/obo/UBERON_0000990"/> - <owl:Restriction> - <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/> - <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_7227"/> - </owl:Restriction> - </owl:intersectionOf> - </owl:Class> - </owl:equivalentClass> - <oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">FBbt:00004826</oboInOwl:id> - <obo:IAO_0000589 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">reproductive system (drosophila)</obo:IAO_0000589> - </owl:Class> - - - <!-- http://purl.obolibrary.org/obo/FBbt_00004850 --> <owl:Class rdf:about="http://purl.obolibrary.org/obo/FBbt_00004850"> Modified: uberon/trunk/bridge/uberon-bridge-to-vhog.owl =================================================================== --- uberon/trunk/bridge/uberon-bridge-to-vhog.owl 2012-09-21 23:59:04 UTC (rev 4556) +++ uberon/trunk/bridge/uberon-bridge-to-vhog.owl 2012-09-22 00:26:34 UTC (rev 4557) @@ -11168,13 +11168,13 @@ <rdfs:subClassOf> <owl:Restriction> <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0002156"/> - <owl:hasValue rdf:resource="http://purl.obolibrary.org/obo/VHOG_0000968"/> + <owl:hasValue rdf:resource="http://purl.obolibrary.org/obo/VHOG_0000577"/> </owl:Restriction> </rdfs:subClassOf> <rdfs:subClassOf> <owl:Restriction> <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0002156"/> - <owl:hasValue rdf:resource="http://purl.obolibrary.org/obo/VHOG_0000577"/> + <owl:hasValue rdf:resource="http://purl.obolibrary.org/obo/VHOG_0000968"/> </owl:Restriction> </rdfs:subClassOf> </owl:Class> @@ -12246,13 +12246,13 @@ <rdfs:subClassOf> <owl:Restriction> <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0002156"/> - <owl:hasValue rdf:resource="http://purl.obolibrary.org/obo/VHOG_0000561"/> + <owl:hasValue rdf:resource="http://purl.obolibrary.org/obo/VHOG_0000967"/> </owl:Restriction> </rdfs:subClassOf> <rdfs:subClassOf> <owl:Restriction> <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0002156"/> - <owl:hasValue rdf:resource="http://purl.obolibrary.org/obo/VHOG_0000967"/> + <owl:hasValue rdf:resource="http://purl.obolibrary.org/obo/VHOG_0000561"/> </owl:Restriction> </rdfs:subClassOf> </owl:Class> This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site. |