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[Obo-svn-commit] SF.net SVN: obo:[4551] uberon/trunk
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From: <cmu...@us...> - 2012-09-20 18:42:05
|
Revision: 4551
http://obo.svn.sourceforge.net/obo/?rev=4551&view=rev
Author: cmungall
Date: 2012-09-20 18:36:34 +0000 (Thu, 20 Sep 2012)
Log Message:
-----------
Modified Paths:
--------------
uberon/trunk/basic.obo
uberon/trunk/basic.owl
uberon/trunk/bridge/uberon-bridge-to-aao.obo
uberon/trunk/bridge/uberon-bridge-to-aao.owl
uberon/trunk/bridge/uberon-bridge-to-tao.obo
uberon/trunk/bridge/uberon-bridge-to-tao.owl
uberon/trunk/bridge/uberon-bridge-to-vhog.owl
uberon/trunk/bridge/uberon-bridge-to-vsao.obo
uberon/trunk/bridge/uberon-bridge-to-xao.obo
uberon/trunk/bridge/uberon-bridge-to-zfa.obo
uberon/trunk/bridge/uberon-bridge-to-zfa.owl
uberon/trunk/composite-metazoan.obo
uberon/trunk/composite-metazoan.owl
uberon/trunk/composite-vertebrate.obo
uberon/trunk/composite-vertebrate.owl
uberon/trunk/core.obo
uberon/trunk/core.owl
uberon/trunk/merged.obo
uberon/trunk/merged.owl
uberon/trunk/subsets/amniote-basic.obo
uberon/trunk/subsets/amniote-basic.owl
uberon/trunk/subsets/aves-basic.obo
uberon/trunk/subsets/aves-basic.owl
uberon/trunk/subsets/euarchontoglires-basic.obo
uberon/trunk/subsets/euarchontoglires-basic.owl
uberon/trunk/uberon.obo
uberon/trunk/uberon.owl
Modified: uberon/trunk/basic.obo
===================================================================
--- uberon/trunk/basic.obo 2012-09-20 06:07:31 UTC (rev 4550)
+++ uberon/trunk/basic.obo 2012-09-20 18:36:34 UTC (rev 4551)
@@ -1,5 +1,5 @@
format-version: 1.2
-data-version: 2012-09-20
+data-version: 2012-09-21
subsetdef: cyclostome_subset "cyclostome structures"
subsetdef: defined_by_ordinal_series "classes that are defined by relative position counting from first in a series of elements along an axis in an individual organism rather than by strict homology"
subsetdef: developmental_classification "developmental_classification"
@@ -114,6 +114,7 @@
property_value: dc-source http://wiki.phenotypercn.org/wg/phenotypercn/index.php?title=Neural_Crest_Workshop xsd:anyURI
property_value: dc-source http://wiki.phenotypercn.org/wiki/August_2012_Notes xsd:anyURI
property_value: dc-source http://www.brain-map.org
+property_value: dc-source http://www.e-lico.eu/public/kupo/kupo.owl
property_value: dc-source https://docs.google.com/document/d/16JZOuH9sh_a8uIXA4cqg0Q1H6MV5yCj3-rhuKsZoV_U/edit xsd:anyURI
property_value: dc-source https://docs.google.com/document/d/1cPWBqrl_Qy7XHEWFqtR_PgQX61yRkgGuLaiDpnEXxkE/edit xsd:anyURI
property_value: dc-source https://docs.google.com/document/d/1MnUgispgGfNQoezYzWzzGTnkAnI0gzRnJIwdip6MMtw/edit xsd:anyURI
@@ -134,6 +135,7 @@
property_value: dc-source "ISBN:9780397517251 Surgical anatomy of the hand and upper extremity. By James R. Doyle and Michael J. Botte" xsd:string
property_value: dc-source "ISBN:9780674021839 The Tree of Life - Guillaume Lecointre, Herve Le Guyader" xsd:string
property_value: dc-source "ISBN:9780878932504 Developmental Biology" xsd:string
+property_value: dc-source "MESH" xsd:string
property_value: dc-source "PMID:11433360 Placental development: lessons from mouse mutants" xsd:string
property_value: dc-source "PMID:16417468 Forgotten and novel aspects in pancreas development, Pieler and Chen" xsd:string
property_value: dc-title "Uber-anatomy ontology" xsd:string
@@ -48566,21 +48568,7 @@
name: regional part of forebrain
def: "A regional part of brain that is part of a forebrain [Obol]." [OBOL:automatic]
subset: non_informative
-synonym: "anatomical structure of brain of forebrain" EXACT [OBOL:automatic]
-synonym: "biological structure of brain of forebrain" EXACT [OBOL:automatic]
-synonym: "brain anatomical structure of forebrain" EXACT [OBOL:automatic]
-synonym: "brain biological structure of forebrain" EXACT [OBOL:automatic]
-synonym: "forebrain anatomical structure of brain" EXACT [OBOL:automatic]
-synonym: "forebrain biological structure of brain" EXACT [OBOL:automatic]
-synonym: "forebrain brain anatomical structure" EXACT [OBOL:automatic]
-synonym: "forebrain brain biological structure" EXACT [OBOL:automatic]
-synonym: "forebrain neuraxis segment" EXACT [OBOL:automatic]
-synonym: "forebrain regional part of brain" EXACT [OBOL:automatic]
synonym: "forebrain segment" EXACT [FMA:61996]
-synonym: "forebrain segment of brain" EXACT [OBOL:automatic]
-synonym: "neuraxis segment of forebrain" EXACT [OBOL:automatic]
-synonym: "regional part of brain of forebrain" EXACT [OBOL:automatic]
-synonym: "segment of brain of forebrain" EXACT [OBOL:automatic]
synonym: "segment of forebrain" EXACT [NIF_GrossAnatomy:birnlex_1677]
xref: FMA:61996
xref: NIF_GrossAnatomy:birnlex_1677
@@ -48628,64 +48616,7 @@
name: regional part of diencephalon
def: "A regional part of brain that is part of a diencephalon [Obol]." [OBOL:automatic]
subset: non_informative
-synonym: "anatomical structure of brain of between brain" EXACT [OBOL:automatic]
-synonym: "anatomical structure of brain of diencephalon" EXACT [OBOL:automatic]
-synonym: "anatomical structure of brain of interbrain" EXACT [OBOL:automatic]
-synonym: "anatomical structure of brain of mature diencephalon" EXACT [OBOL:automatic]
-synonym: "between brain anatomical structure of brain" EXACT [OBOL:automatic]
-synonym: "between brain biological structure of brain" EXACT [OBOL:automatic]
-synonym: "between brain brain anatomical structure" EXACT [OBOL:automatic]
-synonym: "between brain brain biological structure" EXACT [OBOL:automatic]
-synonym: "between brain neuraxis segment" EXACT [OBOL:automatic]
-synonym: "between brain regional part of brain" EXACT [OBOL:automatic]
-synonym: "between brain segment of brain" EXACT [OBOL:automatic]
-synonym: "biological structure of brain of between brain" EXACT [OBOL:automatic]
-synonym: "biological structure of brain of diencephalon" EXACT [OBOL:automatic]
-synonym: "biological structure of brain of interbrain" EXACT [OBOL:automatic]
-synonym: "biological structure of brain of mature diencephalon" EXACT [OBOL:automatic]
-synonym: "brain anatomical structure of between brain" EXACT [OBOL:automatic]
-synonym: "brain anatomical structure of diencephalon" EXACT [OBOL:automatic]
-synonym: "brain anatomical structure of interbrain" EXACT [OBOL:automatic]
-synonym: "brain anatomical structure of mature diencephalon" EXACT [OBOL:automatic]
-synonym: "brain biological structure of between brain" EXACT [OBOL:automatic]
-synonym: "brain biological structure of diencephalon" EXACT [OBOL:automatic]
-synonym: "brain biological structure of interbrain" EXACT [OBOL:automatic]
-synonym: "brain biological structure of mature diencephalon" EXACT [OBOL:automatic]
-synonym: "diencephalon anatomical structure of brain" EXACT [OBOL:automatic]
-synonym: "diencephalon biological structure of brain" EXACT [OBOL:automatic]
-synonym: "diencephalon brain anatomical structure" EXACT [OBOL:automatic]
-synonym: "diencephalon brain biological structure" EXACT [OBOL:automatic]
-synonym: "diencephalon neuraxis segment" EXACT [OBOL:automatic]
-synonym: "diencephalon regional part of brain" EXACT [OBOL:automatic]
synonym: "diencephalon segment" EXACT [FMA:62005]
-synonym: "diencephalon segment of brain" EXACT [OBOL:automatic]
-synonym: "interbrain anatomical structure of brain" EXACT [OBOL:automatic]
-synonym: "interbrain biological structure of brain" EXACT [OBOL:automatic]
-synonym: "interbrain brain anatomical structure" EXACT [OBOL:automatic]
-synonym: "interbrain brain biological structure" EXACT [OBOL:automatic]
-synonym: "interbrain neuraxis segment" EXACT [OBOL:automatic]
-synonym: "interbrain regional part of brain" EXACT [OBOL:automatic]
-synonym: "interbrain segment of brain" EXACT [OBOL:automatic]
-synonym: "mature diencephalon anatomical structure of brain" EXACT [OBOL:automatic]
-synonym: "mature diencephalon biological structure of brain" EXACT [OBOL:automatic]
-synonym: "mature diencephalon brain anatomical structure" EXACT [OBOL:automatic]
-synonym: "mature diencephalon brain biological structure" EXACT [OBOL:automatic]
-synonym: "mature diencephalon neuraxis segment" EXACT [OBOL:automatic]
-synonym: "mature diencephalon regional part of brain" EXACT [OBOL:automatic]
-synonym: "mature diencephalon segment of brain" EXACT [OBOL:automatic]
-synonym: "neuraxis segment of between brain" EXACT [OBOL:automatic]
-synonym: "neuraxis segment of diencephalon" EXACT [OBOL:automatic]
-synonym: "neuraxis segment of interbrain" EXACT [OBOL:automatic]
-synonym: "neuraxis segment of mature diencephalon" EXACT [OBOL:automatic]
-synonym: "regional part of brain of between brain" EXACT [OBOL:automatic]
-synonym: "regional part of brain of diencephalon" EXACT [OBOL:automatic]
-synonym: "regional part of brain of interbrain" EXACT [OBOL:automatic]
-synonym: "regional part of brain of mature diencephalon" EXACT [OBOL:automatic]
-synonym: "segment of brain of between brain" EXACT [OBOL:automatic]
-synonym: "segment of brain of diencephalon" EXACT [OBOL:automatic]
-synonym: "segment of brain of interbrain" EXACT [OBOL:automatic]
-synonym: "segment of brain of mature diencephalon" EXACT [OBOL:automatic]
-synonym: "segment of diencephalon" EXACT [NIF_GrossAnatomy:birnlex_1685]
xref: FMA:62005
xref: NIF_GrossAnatomy:birnlex_1685
xref: SCTID:119264001
@@ -48785,22 +48716,8 @@
name: regional part of telencephalon
def: "A regional part of brain that is part of a telencephalon [Obol]." [OBOL:automatic]
subset: non_informative
-synonym: "anatomical structure of brain of telencephalon" EXACT [OBOL:automatic]
-synonym: "biological structure of brain of telencephalon" EXACT [OBOL:automatic]
-synonym: "brain anatomical structure of telencephalon" EXACT [OBOL:automatic]
-synonym: "brain biological structure of telencephalon" EXACT [OBOL:automatic]
-synonym: "neuraxis segment of telencephalon" EXACT [OBOL:automatic]
-synonym: "regional part of brain of telencephalon" EXACT [OBOL:automatic]
-synonym: "segment of brain of telencephalon" EXACT [OBOL:automatic]
synonym: "segment of telencephalon" EXACT [NIF_GrossAnatomy:birnlex_1700]
-synonym: "telencephalon anatomical structure of brain" EXACT [OBOL:automatic]
-synonym: "telencephalon biological structure of brain" EXACT [OBOL:automatic]
-synonym: "telencephalon brain anatomical structure" EXACT [OBOL:automatic]
-synonym: "telencephalon brain biological structure" EXACT [OBOL:automatic]
-synonym: "telencephalon neuraxis segment" EXACT [OBOL:automatic]
-synonym: "telencephalon regional part of brain" EXACT [OBOL:automatic]
synonym: "telencephalon segment" EXACT [FMA:62374]
-synonym: "telencephalon segment of brain" EXACT [OBOL:automatic]
xref: FMA:62374
xref: NIF_GrossAnatomy:birnlex_1700
is_a: UBERON:0002780 ! regional part of forebrain
@@ -48827,22 +48744,6 @@
[Term]
id: UBERON:0002793
name: dorsal longitudinal fasciculus of pons
-def: "A dorsal longitudinal fasciculus that is part of a pons [Obol]." [OBOL:automatic]
-synonym: "bundle of Schutz of pons" EXACT [OBOL:automatic]
-synonym: "bundle of Schutz of pons of varolius" EXACT [OBOL:automatic]
-synonym: "dorsal longitudinal fasciculus of pons of varolius" EXACT [OBOL:automatic]
-synonym: "fasciculus of Schutz of pons" EXACT [OBOL:automatic]
-synonym: "fasciculus of Schutz of pons of varolius" EXACT [OBOL:automatic]
-synonym: "pons bundle of Schutz" EXACT [OBOL:automatic]
-synonym: "pons dorsal longitudinal fasciculus" EXACT [OBOL:automatic]
-synonym: "pons fasciculus of Schutz" EXACT [OBOL:automatic]
-synonym: "pons of varolius bundle of Schutz" EXACT [OBOL:automatic]
-synonym: "pons of varolius dorsal longitudinal fasciculus" EXACT [OBOL:automatic]
-synonym: "pons of varolius fasciculus of Schutz" EXACT [OBOL:automatic]
-synonym: "pons of varolius posterior longitudinal fasciculus" EXACT [OBOL:automatic]
-synonym: "pons posterior longitudinal fasciculus" EXACT [OBOL:automatic]
-synonym: "posterior longitudinal fasciculus of pons" EXACT [OBOL:automatic]
-synonym: "posterior longitudinal fasciculus of pons of varolius" EXACT [OBOL:automatic]
xref: FMA:72492
xref: NIF_GrossAnatomy:birnlex_1707
is_a: UBERON:0003045 ! dorsal longitudinal fasciculus
@@ -78355,26 +78256,20 @@
[Term]
id: UBERON:0004763
name: endochondral bone tissue
-def: "Replacement bone tissue that forms within cartilage[TAO]. Endochondral ossification is the formation of bone by the replacement of cartilage tissue with mineralized bone[GO]. cartilage is present during endochondral ossification. It is also an essential process during the rudimentary formation of long bones, the growth of the length of long bones, and the natural healing of bone fractures[WP]." [GO:0001958, Wikipedia:Endochondral_ossification]
-comment: note the distinction between endochondral bone and endochondral bone tissue. Some bones may be a mixture of both tissue types. The MA class most likely refers to a tissue type
+def: "Replacement bone tissue that forms within cartilage[VSAO, modified]." [GO:0001958, VSAO:0000145, Wikipedia:Endochondral_ossification]
+comment: The text and logical definition of this term was modified from the definition of 'endochondral bone' in ZFA. AO notes: note the distinction between endochondral bone and endochondral bone tissue. Some bones may be a mixture of both tissue types. The MA class most likely refers to a tissue type
subset: uberon_slim
subset: vertebrate_core
-synonym: "replacement bone" BROAD [ZFA:0001628]
-xref: AAO:0010768
xref: MA:0002836
-xref: TAO:0001637
-xref: ZFA:0001628
is_a: UBERON:0002481 ! bone tissue
-is_a: UBERON:0010522 {source="ZFA"} ! replacement element
disjoint_from: UBERON:0004764 ! intramembranous bone tissue
relationship: part_of UBERON:0002513 ! endochondral bone
-property_value: external_definition "Bone that forms as a replacement of another structural tissue.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0001637", ontology="TAO", source="TAO:wd"}
[Term]
id: UBERON:0004764
name: intramembranous bone tissue
def: "Bone tissue that forms directly within mesenchyme, and does not replace other tissues[TAO]. Intramembranous ossification is the formation of bone in which osteoblasts secrete a collagen-proteoglycan matrix that binds calcium salts and becomes calcified[GO]. Intramembranous ossification is the way flat bones and the shell of a turtle are formed[GO]. Unlike endochondral ossification, cartilage is not present during intramembranous ossification[WP]." [GO:0001957, Wikipedia:Intramembranous_ossification]
-comment: note the distinction between intramembranous bone and intramembranous bone tissue. Some bones may be a mixture of both tissue types. The MA class most likely refers to a tissue type.
+comment: note the distinction between intramembranous bone and intramembranous bone tissue. Some bones may be a mixture of both tissue types. The MA class most likely refers to a tissue type (it is under bone tissue and connective tissue; there are no child classes)
xref: MA:0002837
is_a: UBERON:0002481 ! bone tissue
relationship: develops_from UBERON:0003104 ! mesenchyme
@@ -109865,14 +109760,14 @@
id: UBERON:0008909
name: perichordal bone
def: "Bone element that is adjacent to the notochord." [VSAO:0000307]
-comment: Editor notes: We go with the latest VSAO in making this a subtype of bone, and add a logical definition based on the textual definition in VSAO
+comment: Editor notes: We go with the latest VSAO in making this a subtype of bone, and add a logical definition based on the textual definition in VSAO. We also include the subtyping under 'replacement bone', for consistency with ZFA
synonym: "perichordal bone" RELATED [ZFA:0001629]
synonym: "perichordal bones" EXACT PLURAL [ZFA:0001629]
xref: AAO:0010777
xref: TAO:0001639
xref: VSAO:0000307
xref: ZFA:0001629
-is_a: UBERON:0001474 ! bone
+is_a: UBERON:0012075 {notes="not in VSAO", source="ZFA"} ! replacement bone
disjoint_from: UBERON:0008913 ! perichondral bone
property_value: external_definition "Replacement bone that forms within the connective tissue surrounding the notochord.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0001639", ontology="TAO", source="TAO:wd"}
@@ -109880,23 +109775,23 @@
id: UBERON:0008911
name: chondral bone
def: "Replacement bone that forms within or surrounding a cartilaginous skeletal element." [zfin:curator]
-comment: Consider obsoleting
-synonym: "chondral bone" RELATED [ZFA:0001693]
+comment: This class was introduced to be consistent with the ZFA hierarchy. The term was never introduced into VSAO.
xref: AAO:0010774
xref: ZFA:0001693
-is_a: UBERON:0004763 {source="ZFA"} ! endochondral bone tissue
+is_a: UBERON:0012075 {source="ZFA"} ! replacement bone
[Term]
id: UBERON:0008913
name: perichondral bone
def: "Bone element that is located on the surface of a cartilage element." [VSAO:0000308]
+comment: include the subtyping under 'replacement bone', for consistency with ZFA, but VSAO does not include this intermediate class
synonym: "perichondral bone" RELATED [ZFA:0001630]
synonym: "perichondral bones" EXACT PLURAL [ZFA:0001630]
xref: AAO:0010779
xref: TAO:0001638
xref: VSAO:0000308
xref: ZFA:0001630
-is_a: UBERON:0001474 {source="VSAO"} ! bone
+is_a: UBERON:0008911 {source="ZFA"} ! chondral bone
relationship: develops_from UBERON:0002222 {source="ZFA"} ! perichondrium
property_value: axiom_lost_from_external_ontology "relationship loss: participates_in perichondral ossification (GO:0036073)[VSAO]" xsd:string {date_retrieved="2012-08-14", external_class="VSAO:0000308", ontology="VSAO"}
property_value: external_definition "Replacement bone that forms within the connective tissue surrounding cartilage.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0001638", ontology="TAO", source="TAO:wd"}
@@ -128216,6 +128111,19 @@
relationship: part_of UBERON:0012072 ! palatal part of dermatocranium
[Term]
+id: UBERON:0012075
+name: replacement bone
+def: "Bone that forms as a replacement of another structural tissue." [ZFA:0001628]
+comment: This class was introduced to be consistent with the ZFA hierarchy. The corresponding TAO term was obsoleted, and never introduced into VSAO. Note that VSAO does have replacement element.
+synonym: "replacement bones" EXACT PLURAL [ZFA:0001628]
+xref: AAO:0010768
+xref: TAO:0001637
+xref: ZFA:0001628
+is_a: UBERON:0001474 {source="ZFA"} ! bone
+is_a: UBERON:0010522 {source="ZFA"} ! replacement element
+property_value: external_definition "Bone that forms as a replacement of another structural tissue.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0001637", ontology="TAO", source="TAO:wd"}
+
+[Term]
id: UBERON:1000000
name: chin ventral margin
def: "Subdivision of the head consisting of the area along the lower edge of the chin." [UBERON:EJS]
Modified: uberon/trunk/basic.owl
===================================================================
--- uberon/trunk/basic.owl 2012-09-20 06:07:31 UTC (rev 4550)
+++ uberon/trunk/basic.owl 2012-09-20 18:36:34 UTC (rev 4551)
@@ -10,7 +10,7 @@
xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon.owl">
<oboInOwl:hasOBOFormatVersion rdf:datatype="http://www.w3.org/2001/XMLSchema#string">1.2</oboInOwl:hasOBOFormatVersion>
- <oboInOwl:data-version rdf:datatype="http://www.w3.org/2001/XMLSchema#string">2012-09-20</oboInOwl:data-version>
+ <oboInOwl:data-version rdf:datatype="http://www.w3.org/2001/XMLSchema#string">2012-09-21</oboInOwl:data-version>
<oboInOwl:treat-xrefs-as-reverse-genus-differentia rdf:datatype="http://www.w3.org/2001/XMLSchema#string">AAO part_of NCBITaxon:8292</oboInOwl:treat-xrefs-as-reverse-genus-differentia>
<uberon:dc-contributor rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Alan Ruttenberg</uberon:dc-contributor>
<uberon:dc-creator rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Alex Decechi</uberon:dc-creator>
@@ -61,6 +61,7 @@
<uberon:dc-contributor rdf:datatype="http://www.w3.org/2001/XMLSchema#string">James Balhoff</uberon:dc-contributor>
<uberon:dc-contributor rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Jonathan Bard</uberon:dc-contributor>
<oboInOwl:treat-xrefs-as-reverse-genus-differentia rdf:datatype="http://www.w3.org/2001/XMLSchema#string">MA part_of NCBITaxon:10088</oboInOwl:treat-xrefs-as-reverse-genus-differentia>
+ <uberon:dc-source rdf:datatype="http://www.w3.org/2001/XMLSchema#string">MESH</uberon:dc-source>
<oboInOwl:treat-xrefs-as-reverse-genus-differentia rdf:datatype="http://www.w3.org/2001/XMLSchema#string">MFO part_of NCBITaxon:8089</oboInOwl:treat-xrefs-as-reverse-genus-differentia>
<uberon:dc-contributor rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Marc Robinson-Rechavi</uberon:dc-contributor>
<uberon:dc-contributor rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Maryann Martone</uberon:dc-contributor>
@@ -137,6 +138,7 @@
<uberon:dc-source rdf:resource="http://purl.obolibrary.org/obo/wbbt.owl"/>
<uberon:dc-source rdf:resource="http://purl.obolibrary.org/obo/xao.owl"/>
<uberon:dc-source rdf:resource="http://purl.obolibrary.org/obo/zfa.owl"/>
+ <uberon:dc-source rdf:resource="http://www.e-lico.eu/public/kupo/kupo.owl"/>
</owl:Ontology>
@@ -437,12 +439,12 @@
<oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">develops_from</oboInOwl:id>
<oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">uberon</oboInOwl:hasOBONamespace>
<owl:propertyChainAxiom rdf:parseType="Collection">
- <rdf:Description rdf:about="http://purl.obolibrary.org/obo/BFO_0000050"/>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/RO_0002202"/>
+ <rdf:Description rdf:about="http://purl.obolibrary.org/obo/BFO_0000050"/>
</owl:propertyChainAxiom>
<owl:propertyChainAxiom rdf:parseType="Collection">
- <rdf:Description rdf:about="http://purl.obolibrary.org/obo/RO_0002202"/>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/BFO_0000050"/>
+ <rdf:Description rdf:about="http://purl.obolibrary.org/obo/RO_0002202"/>
</owl:propertyChainAxiom>
</owl:ObjectProperty>
@@ -574,6 +576,14 @@
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000002"/>
</owl:Axiom>
<owl:Axiom>
+ <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">FMA:17740</oboInOwl:hasDbXref>
+ <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">FMA:TA</oboInOwl:hasDbXref>
+ <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">canalis cervicis uteri</owl:annotatedTarget>
+ <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000002"/>
+ <oboInOwl:hasSynonymType rdf:resource="http://purl.obolibrary.org/obo/uberon#LATIN"/>
+ <owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"/>
+ </owl:Axiom>
+ <owl:Axiom>
<oboInOwl:source rdf:datatype="http://www.w3.org/2001/XMLSchema#string">FMA</oboInOwl:source>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000002"/>
<owl:annotatedTarget rdf:resource="http://purl.obolibrary.org/obo/UBERON_0001560"/>
@@ -590,14 +600,6 @@
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/uberon#homology_notes"/>
</owl:Axiom>
<owl:Axiom>
- <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">FMA:17740</oboInOwl:hasDbXref>
- <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">FMA:TA</oboInOwl:hasDbXref>
- <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">canalis cervicis uteri</owl:annotatedTarget>
- <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000002"/>
- <oboInOwl:hasSynonymType rdf:resource="http://purl.obolibrary.org/obo/uberon#LATIN"/>
- <owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"/>
- </owl:Axiom>
- <owl:Axiom>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">EMAPA:29927</oboInOwl:hasDbXref>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">cervix uteri</owl:annotatedTarget>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000002"/>
@@ -652,28 +654,6 @@
<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/uberon#vertebrate_core"/>
</owl:Class>
<owl:Axiom>
- <oboInOwl:source rdf:datatype="http://www.w3.org/2001/XMLSchema#string">FMA</oboInOwl:source>
- <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000003"/>
- <owl:annotatedTarget rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000161"/>
- <owl:annotatedProperty rdf:resource="http://www.w3.org/2000/01/rdf-schema#subClassOf"/>
- </owl:Axiom>
- <owl:Axiom>
- <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Orifice of the olfactory system. The naris is the route by which odorants enter the olfactory system[MAH].</owl:annotatedTarget>
- <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">UBERON:MAH</oboInOwl:hasDbXref>
- <owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
- <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000003"/>
- </owl:Axiom>
- <owl:Axiom>
- <oboInOwl:date_retrieved rdf:datatype="http://www.w3.org/2001/XMLSchema#string">2012-09-17</oboInOwl:date_retrieved>
- <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Naris refer to the external and interior naris (choana) of tetrapods, and to anterior and posterior naris of zebrafish. It seems now accepted that the structure is homologous: The choana, a unique 'internal nostril' opening from the nasal sac into the roof of the mouth, is a key part of the tetrapod (land vertebrate) respiratory system. It was the first component of the tetrapod body plan to evolve, well before the origin of limbs, and is therefore crucial to our understanding of the beginning of the fish-tetrapod transition. (...) Here we present new material of Kenichthys, a 395-million-year-old fossil fish from China, that provides direct evidence for the origin of the choana and establishes its homology: it is indeed a displaced posterior external nostril that, during a brief transitional stage illustrated by Kenichthys, separated the maxilla from the premaxilla.[well established][VHOG]</owl:annotatedTarget>
- <oboInOwl:ontology rdf:datatype="http://www.w3.org/2001/XMLSchema#string">VHOG</oboInOwl:ontology>
- <oboInOwl:external_class rdf:datatype="http://www.w3.org/2001/XMLSchema#string">VHOG:0000663</oboInOwl:external_class>
- <oboInOwl:source rdf:datatype="http://www.w3.org/2001/XMLSchema#string">doi:10.1038/nature02843 Zhu M, Ahlberg PE, The origin of the internal nostril in tetrapodes. Nature (2004)</oboInOwl:source>
- <oboInOwl:source rdf:datatype="http://www.w3.org/2001/XMLSchema#string">http://bgee.unil.ch/</oboInOwl:source>
- <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000003"/>
- <owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/uberon#homology_notes"/>
- </owl:Axiom>
- <owl:Axiom>
<oboInOwl:date_retrieved rdf:datatype="http://www.w3.org/2001/XMLSchema#string">2012-06-20</oboInOwl:date_retrieved>
<oboInOwl:ontology rdf:datatype="http://www.w3.org/2001/XMLSchema#string">AAO</oboInOwl:ontology>
<oboInOwl:external_class rdf:datatype="http://www.w3.org/2001/XMLSchema#string">AAO:0000311</oboInOwl:external_class>
@@ -693,6 +673,28 @@
</owl:Restriction>
</owl:annotatedTarget>
</owl:Axiom>
+ <owl:Axiom>
+ <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Orifice of the olfactory system. The naris is the route by which odorants enter the olfactory system[MAH].</owl:annotatedTarget>
+ <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">UBERON:MAH</oboInOwl:hasDbXref>
+ <owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
+ <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000003"/>
+ </owl:Axiom>
+ <owl:Axiom>
+ <oboInOwl:source rdf:datatype="http://www.w3.org/2001/XMLSchema#string">FMA</oboInOwl:source>
+ <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000003"/>
+ <owl:annotatedTarget rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000161"/>
+ <owl:annotatedProperty rdf:resource="http://www.w3.org/2000/01/rdf-schema#subClassOf"/>
+ </owl:Axiom>
+ <owl:Axiom>
+ <oboInOwl:date_retrieved rdf:datatype="http://www.w3.org/2001/XMLSchema#string">2012-09-17</oboInOwl:date_retrieved>
+ <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Naris refer to the external and interior naris (choana) of tetrapods, and to anterior and posterior naris of zebrafish. It seems now accepted that the structure is homologous: The choana, a unique 'internal nostril' opening from the nasal sac into the roof of the mouth, is a key part of the tetrapod (land vertebrate) respiratory system. It was the first component of the tetrapod body plan to evolve, well before the origin of limbs, and is therefore crucial to our understanding of the beginning of the fish-tetrapod transition. (...) Here we present new material of Kenichthys, a 395-million-year-old fossil fish from China, that provides direct evidence for the origin of the choana and establishes its homology: it is indeed a displaced posterior external nostril that, during a brief transitional stage illustrated by Kenichthys, separated the maxilla from the premaxilla.[well established][VHOG]</owl:annotatedTarget>
+ <oboInOwl:ontology rdf:datatype="http://www.w3.org/2001/XMLSchema#string">VHOG</oboInOwl:ontology>
+ <oboInOwl:external_class rdf:datatype="http://www.w3.org/2001/XMLSchema#string">VHOG:0000663</oboInOwl:external_class>
+ <oboInOwl:source rdf:datatype="http://www.w3.org/2001/XMLSchema#string">doi:10.1038/nature02843 Zhu M, Ahlberg PE, The origin of the internal nostril in tetrapodes. Nature (2004)</oboInOwl:source>
+ <oboInOwl:source rdf:datatype="http://www.w3.org/2001/XMLSchema#string">http://bgee.unil.ch/</oboInOwl:source>
+ <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000003"/>
+ <owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/uberon#homology_notes"/>
+ </owl:Axiom>
@@ -704,14 +706,14 @@
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0004121"/>
<rdfs:subClassOf>
<owl:Restriction>
- <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
- <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_0001004"/>
+ <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0002202"/>
+ <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_0003050"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
- <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0002202"/>
- <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_0003050"/>
+ <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
+ <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_0001004"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
@@ -754,13 +756,6 @@
<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/uberon#vertebrate_core"/>
</owl:Class>
<owl:Axiom>
- <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Nasus</owl:annotatedTarget>
- <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Wikipedia:Nose</oboInOwl:hasDbXref>
- <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000004"/>
- <oboInOwl:hasSynonymType rdf:resource="http://purl.obolibrary.org/obo/uberon#LATIN"/>
- <owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym"/>
- </owl:Axiom>
- <owl:Axiom>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">ZFA:0000047</oboInOwl:hasDbXref>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">nasal sac</owl:annotatedTarget>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000004"/>
@@ -768,7 +763,14 @@
<owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"/>
</owl:Axiom>
<owl:Axiom>
+ <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Nasus</owl:annotatedTarget>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Wikipedia:Nose</oboInOwl:hasDbXref>
+ <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000004"/>
+ <oboInOwl:hasSynonymType rdf:resource="http://purl.obolibrary.org/obo/uberon#LATIN"/>
+ <owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym"/>
+ </owl:Axiom>
+ <owl:Axiom>
+ <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Wikipedia:Nose</oboInOwl:hasDbXref>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">a protuberance in vertebrates that houses the nostrils, or nares, which admit and expel air for respiration in conjunction with the mouth. Behind the nose are the olfactory mucosa and the sinuses. Behind the nasal cavity, air next passes through the pharynx, shared with the digestive system, and then into the rest of the respiratory system. In humans, the nose is located centrally on the face; on most other mammals, it is on the upper tip of the snout[WP]. GO: The nose is the specialized structure of the face that serves as the organ of the sense of smell and as part of the respiratory system. Includes the nasi externus (external nose) and cavitas nasi (nasal cavity).</owl:annotatedTarget>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000004"/>
@@ -785,13 +787,13 @@
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
- <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_0005726"/>
+ <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_0001016"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
- <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_0001016"/>
+ <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_0005726"/>
</owl:Restriction>
</rdfs:subClassOf>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">FBbt:00005157</oboInOwl:hasDbXref>
@@ -853,6 +855,12 @@
<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/uberon#uberon_slim"/>
</owl:Class>
<owl:Axiom>
+ <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">BTO:0000991</oboInOwl:hasDbXref>
+ <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">island of pancreas</owl:annotatedTarget>
+ <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000006"/>
+ <owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym"/>
+ </owl:Axiom>
+ <owl:Axiom>
<oboInOwl:date_retrieved rdf:datatype="http://www.w3.org/2001/XMLSchema#string">2012-09-17</oboInOwl:date_retrieved>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Mammals, birds, reptiles and amphibians have a pancreas with similar histology and mode of development, while in some fish, the islet cells are segregated as Brockmann bodies.[well established][VHOG]</owl:annotatedTarget>
<oboInOwl:source rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PMID:7600975 Slack JMW, Developmental biology of the pancreas. Development (1995)</oboInOwl:source>
@@ -863,18 +871,18 @@
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/uberon#homology_notes"/>
</owl:Axiom>
<owl:Axiom>
- <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Regions of the pancreas that contain its endocrine (i.e., hormone-producing) cells.</owl:annotatedTarget>
- <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Wikipedia:Islets_of_Langerhans</oboInOwl:hasDbXref>
- <owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
- <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000006"/>
- </owl:Axiom>
- <owl:Axiom>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">BTO:0000991</oboInOwl:hasDbXref>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">island of Langerhans</owl:annotatedTarget>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000006"/>
<owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym"/>
</owl:Axiom>
<owl:Axiom>
+ <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Regions of the pancreas that contain its endocrine (i.e., hormone-producing) cells.</owl:annotatedTarget>
+ <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Wikipedia:Islets_of_Langerhans</oboInOwl:hasDbXref>
+ <owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
+ <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000006"/>
+ </owl:Axiom>
+ <owl:Axiom>
<oboInOwl:date_retrieved rdf:datatype="http://www.w3.org/2001/XMLSchema#string">2012-06-20</oboInOwl:date_retrieved>
<oboInOwl:ontology rdf:datatype="http://www.w3.org/2001/XMLSchema#string">AAO</oboInOwl:ontology>
<oboInOwl:external_class rdf:datatype="http://www.w3.org/2001/XMLSchema#string">AAO:0010406</oboInOwl:external_class>
@@ -883,12 +891,6 @@
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000006"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/uberon#external_definition"/>
</owl:Axiom>
- <owl:Axiom>
- <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">BTO:0000991</oboInOwl:hasDbXref>
- <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">island of pancreas</owl:annotatedTarget>
- <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000006"/>
- <owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym"/>
- </owl:Axiom>
@@ -955,25 +957,16 @@
<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/uberon#vertebrate_core"/>
</owl:Class>
<owl:Axiom>
- <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">ZFA:0000118</oboInOwl:hasDbXref>
- <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">hypophysis</owl:annotatedTarget>
+ <oboInOwl:date_retrieved rdf:datatype="http://www.w3.org/2001/XMLSchema#string">2012-09-17</oboInOwl:date_retrieved>
+ <oboInOwl:source rdf:datatype="http://www.w3.org/2001/XMLSchema#string">ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.510</oboInOwl:source>
+ <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">It (the hypophysis) develops embryonically in all vertebrates from two ectodermal evaginations that meet and unite. (...) A well-developed hypophyseal system with functional connections to the hypothalamus is unique to craniates.[well established][VHOG]</owl:annotatedTarget>
+ <oboInOwl:ontology rdf:datatype="http://www.w3.org/2001/XMLSchema#string">VHOG</oboInOwl:ontology>
+ <oboInOwl:external_class rdf:datatype="http://www.w3.org/2001/XMLSchema#string">VHOG:0000143</oboInOwl:external_class>
+ <oboInOwl:source rdf:datatype="http://www.w3.org/2001/XMLSchema#string">http://bgee.unil.ch/</oboInOwl:source>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000007"/>
- <owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym"/>
+ <owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/uberon#homology_notes"/>
</owl:Axiom>
<owl:Axiom>
- <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">The pituitary gland is an endocrine gland that secretes hormones that regulate many other glands [GO]. An endocrine gland located ventral to the diencephalon and derived from mixed neuroectodermal and non neuroectodermal origin [ZFIN].</owl:annotatedTarget>
- <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Wikipedia:Pituitary_gland</oboInOwl:hasDbXref>
- <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">ZFIN:curator</oboInOwl:hasDbXref>
- <owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
- <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000007"/>
- </owl:Axiom>
- <owl:Axiom>
- <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">MA:0000176</oboInOwl:hasDbXref>
- <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">hypophysis cerebri</owl:annotatedTarget>
- <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000007"/>
- <owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym"/>
- </owl:Axiom>
- <owl:Axiom>
<oboInOwl:source rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Wikipedia</oboInOwl:source>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000007"/>
<owl:annotatedProperty rdf:resource="http://www.w3.org/2000/01/rdf-schema#subClassOf"/>
@@ -985,21 +978,33 @@
</owl:annotatedTarget>
</owl:Axiom>
<owl:Axiom>
+ <oboInOwl:date_retrieved rdf:datatype="http://www.w3.org/2001/XMLSchema#string">2012-06-20</oboInOwl:date_retrieved>
+ <oboInOwl:ontology rdf:datatype="http://www.w3.org/2001/XMLSchema#string">AAO</oboInOwl:ontology>
+ <oboInOwl:external_class rdf:datatype="http://www.w3.org/2001/XMLSchema#string">AAO:0010536</oboInOwl:external_class>
+ <oboInOwl:source rdf:datatype="http://www.w3.org/2001/XMLSchema#string">AAO:BJB</oboInOwl:source>
+ <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">An endocrine gland derived from infundibulum of the floor of the diencephalon and an ectodermal dorsal protrusion from the buccal cavity which controls the secretion of many hormones influencing the function of various organs of the body.[AAO]</owl:annotatedTarget>
+ <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000007"/>
+ <owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/uberon#external_definition"/>
+ </owl:Axiom>
+ <owl:Axiom>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">BTO:0001073</oboInOwl:hasDbXref>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">pituitary body</owl:annotatedTarget>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000007"/>
<owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"/>
</owl:Axiom>
<owl:Axiom>
- <oboInOwl:date_retrieved rdf:datatype="http://www.w3.org/2001/XMLSchema#string">2012-08-14</oboInOwl:date_retrieved>
- <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">An endocrine gland located ventral to the diencephalon and derived from mixed neuroectodermal and non neuroectodermal origin.[TAO]</owl:annotatedTarget>
- <oboInOwl:ontology rdf:datatype="http://www.w3.org/2001/XMLSchema#string">TAO</oboInOwl:ontology>
- <oboInOwl:external_class rdf:datatype="http://www.w3.org/2001/XMLSchema#string">TAO:0000118</oboInOwl:external_class>
- <oboInOwl:source rdf:datatype="http://www.w3.org/2001/XMLSchema#string">ZFIN:curator</oboInOwl:source>
+ <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">BTO:0001073</oboInOwl:hasDbXref>
+ <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">pituitary</owl:annotatedTarget>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000007"/>
- <owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/uberon#external_definition"/>
+ <owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"/>
</owl:Axiom>
<owl:Axiom>
+ <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">ZFA:0000118</oboInOwl:hasDbXref>
+ <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">hypophysis</owl:annotatedTarget>
+ <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000007"/>
+ <owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym"/>
+ </owl:Axiom>
+ <owl:Axiom>
<oboInOwl:source rdf:datatype="http://www.w3.org/2001/XMLSchema#string">ZFA</oboInOwl:source>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000007"/>
<owl:annotatedProperty rdf:resource="http://www.w3.org/2000/01/rdf-schema#subClassOf"/>
@@ -1011,29 +1016,26 @@
</owl:annotatedTarget>
</owl:Axiom>
<owl:Axiom>
- <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">BTO:0001073</oboInOwl:hasDbXref>
- <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">pituitary</owl:annotatedTarget>
+ <oboInOwl:date_retrieved rdf:datatype="http://www.w3.org/2001/XMLSchema#string">2012-08-14</oboInOwl:date_retrieved>
+ <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">An endocrine gland located ventral to the diencephalon and derived from mixed neuroectodermal and non neuroectodermal origin.[TAO]</owl:annotatedTarget>
+ <oboInOwl:ontology rdf:datatype="http://www.w3.org/2001/XMLSchema#string">TAO</oboInOwl:ontology>
+ <oboInOwl:external_class rdf:datatype="http://www.w3.org/2001/XMLSchema#string">TAO:0000118</oboInOwl:external_class>
+ <oboInOwl:source rdf:datatype="http://www.w3.org/2001/XMLSchema#string">ZFIN:curator</oboInOwl:source>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000007"/>
- <owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"/>
+ <owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/uberon#external_definition"/>
</owl:Axiom>
<owl:Axiom>
- <oboInOwl:date_retrieved rdf:datatype="http://www.w3.org/2001/XMLSchema#string">2012-06-20</oboInOwl:date_retrieved>
- <oboInOwl:ontology rdf:datatype="http://www.w3.org/2001/XMLSchema#string">AAO</oboInOwl:ontology>
- <oboInOwl:external_class rdf:datatype="http://www.w3.org/2001/XMLSchema#string">AAO:0010536</oboInOwl:external_class>
- <oboInOwl:source rdf:datatype="http://www.w3.org/2001/XMLSchema#string">AAO:BJB</oboInOwl:source>
- <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">An endocrine gland derived from infundibulum of the floor of the diencephalon and an ectodermal dorsal protrusion from the buccal cavity which controls the secretion of many hormones influencing the function of various organs of the body.[AAO]</owl:annotatedTarget>
+ <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Wikipedia:Pituitary_gland</oboInOwl:hasDbXref>
+ <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">hypophysis, glandula pituitaria</owl:annotatedTarget>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000007"/>
- <owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/uberon#external_definition"/>
+ <oboInOwl:hasSynonymType rdf:resource="http://purl.obolibrary.org/obo/uberon#LATIN"/>
+ <owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym"/>
</owl:Axiom>
<owl:Axiom>
- <oboInOwl:date_retrieved rdf:datatype="http://www.w3.org/2001/XMLSchema#string">2012-09-17</oboInOwl:date_retrieved>
- <oboInOwl:source rdf:datatype="http://www.w3.org/2001/XMLSchema#string">ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.510</oboInOwl:source>
- <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">It (the hypophysis) develops embryonically in all vertebrates from two ectodermal evaginations that meet and unite. (...) A well-developed hypophyseal system with functional connections to the hypothalamus is unique to craniates.[well established][VHOG]</owl:annotatedTarget>
- <oboInOwl:ontology rdf:datatype="http://www.w3.org/2001/XMLSchema#string">VHOG</oboInOwl:ontology>
- <oboInOwl:external_class rdf:datatype="http://www.w3.org/2001/XMLSchema#string">VHOG:0000143</oboInOwl:external_class>
- <oboInOwl:source rdf:datatype="http://www.w3.org/2001/XMLSchema#string">http://bgee.unil.ch/</oboInOwl:source>
+ <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">MA:0000176</oboInOwl:hasDbXref>
+ <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">hypophysis cerebri</owl:annotatedTarget>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000007"/>
- <owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/uberon#homology_notes"/>
+ <owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym"/>
</owl:Axiom>
<owl:Axiom>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">BTO:0001073</oboInOwl:hasDbXref>
@@ -1042,11 +1044,11 @@
<owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym"/>
</owl:Axiom>
<owl:Axiom>
+ <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">The pituitary gland is an endocrine gland that secretes hormones that regulate many other glands [GO]. An endocrine gland located ventral to the diencephalon and derived from mixed neuroectodermal and non neuroectodermal origin [ZFIN].</owl:annotatedTarget>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Wikipedia:Pituitary_gland</oboInOwl:hasDbXref>
- <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">hypophysis, glandula pituitaria</owl:annotatedTarget>
+ <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">ZFIN:curator</oboInOwl:hasDbXref>
+ <owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000007"/>
- <oboInOwl:hasSynonymType rdf:resource="http://purl.obolibrary.org/obo/uberon#LATIN"/>
- <owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym"/>
</owl:Axiom>
@@ -1081,32 +1083,32 @@
<owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"/>
</owl:Axiom>
<owl:Axiom>
- <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">FMA:85392</oboInOwl:hasDbXref>
- <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">submucosa of region of organ</owl:annotatedTarget>
+ <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">BTO:0002107</oboInOwl:hasDbXref>
+ <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">submucous layer</owl:annotatedTarget>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000009"/>
- <owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"/>
+ <owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym"/>
</owl:Axiom>
<owl:Axiom>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">BTO:0002107</oboInOwl:hasDbXref>
- <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">submucous layer</owl:annotatedTarget>
+ <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">tela submucosa</owl:annotatedTarget>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000009"/>
<owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym"/>
</owl:Axiom>
<owl:Axiom>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">FMA:85391</oboInOwl:hasDbXref>
- <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">organ submucosa</owl:annotatedTarget>
+ <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">submucosa of organ</owl:annotatedTarget>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000009"/>
<owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"/>
</owl:Axiom>
<owl:Axiom>
- <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">BTO:0002107</oboInOwl:hasDbXref>
- <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">tela submucosa</owl:annotatedTarget>
+ <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">FMA:85391</oboInOwl:hasDbXref>
+ <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">organ submucosa</owl:annotatedTarget>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000009"/>
- <owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym"/>
+ <owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"/>
</owl:Axiom>
<owl:Axiom>
- <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">FMA:85391</oboInOwl:hasDbXref>
- <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">submucosa of organ</owl:annotatedTarget>
+ <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">FMA:85392</oboInOwl:hasDbXref>
+ <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">submucosa of region of organ</owl:annotatedTarget>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000009"/>
<owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"/>
</owl:Axiom>
@@ -1169,15 +1171,21 @@
<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/uberon#vertebrate_core"/>
</owl:Class>
<owl:Axiom>
- <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">FB:gg</oboInOwl:hasDbXref>
- <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Nervous structures including ganglia outside of the central nervous system. Divided into somatic nervous system and autonomic nervous system</owl:annotatedTarget>
- <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">OMD:peripheral+nervous+system</oboInOwl:hasDbXref>
- <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Wikipedia:Peripheral_nervous_system</oboInOwl:hasDbXref>
- <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">ZFIN:curator</oboInOwl:hasDbXref>
- <owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
+ <oboInOwl:date_retrieved rdf:datatype="http://www.w3.org/2001/XMLSchema#string">2012-08-14</oboInOwl:date_retrieved>
+ <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Nervous structures including ganglia outside of the central nervous system. Kimmel et al, 1995.[TAO]</owl:annotatedTarget>
+ <oboInOwl:ontology rdf:datatype="http://www.w3.org/2001/XMLSchema#string">TAO</oboInOwl:ontology>
+ <oboInOwl:external_class rdf:datatype="http://www.w3.org/2001/XMLSchema#string">TAO:0000142</oboInOwl:external_class>
+ <oboInOwl:source rdf:datatype="http://www.w3.org/2001/XMLSchema#string">ZFIN:curator</oboInOwl:source>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000010"/>
+ <owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/uberon#external_definition"/>
</owl:Axiom>
<owl:Axiom>
+ <oboInOwl:source rdf:datatype="http://www.w3.org/2001/XMLSchema#string">cjm</oboInOwl:source>
+ <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000010"/>
+ <owl:annotatedTarget rdf:resource="http://purl.obolibrary.org/obo/UBERON_0011216"/>
+ <owl:annotatedProperty rdf:resource="http://www.w3.org/2000/01/rdf-schema#subClassOf"/>
+ </owl:Axiom>
+ <owl:Axiom>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Wikipedia:Peripheral_nervous_system</oboInOwl:hasDbXref>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">pars peripherica; systema nervosum periphericum</owl:annotatedTarget>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000010"/>
@@ -1185,18 +1193,12 @@
<owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym"/>
</owl:Axiom>
<owl:Axiom>
- <oboInOwl:source rdf:datatype="http://www.w3.org/2001/XMLSchema#string">cjm</oboInOwl:source>
+ <oboInOwl:date_retrieved rdf:datatype="http://www.w3.org/2001/XMLSchema#string">2012-06-20</oboInOwl:date_retrieved>
+ <oboInOwl:ontology rdf:datatype="http://www.w3.org/2001/XMLSchema#string">AAO</oboInOwl:ontology>
+ <oboInOwl:external_class rdf:datatype="http://www.w3.org/2001/XMLSchema#string">AAO:0000429</oboInOwl:external_class>
+ <oboInOwl:source rdf:datatype="http://www.w3.org/2001/XMLSchema#string">AAO:BJB</oboInOwl:source>
+ <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Part of nervous system in which nerves extend throughout the body outside o...
[truncated message content] |