From: <cmu...@us...> - 2012-07-18 05:07:02
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Revision: 4440 http://obo.svn.sourceforge.net/obo/?rev=4440&view=rev Author: cmungall Date: 2012-07-18 05:06:54 +0000 (Wed, 18 Jul 2012) Log Message: ----------- metadata for collector ontologies Modified Paths: -------------- uberon/trunk/bridge/collected-adult-mammal.owl uberon/trunk/bridge/collected-amniote.owl uberon/trunk/bridge/collected-embryonic-mammal.owl uberon/trunk/bridge/collected-eukaryote.owl uberon/trunk/bridge/collected-mammal.owl uberon/trunk/bridge/collected-metazoa.owl uberon/trunk/bridge/collected-opisthokont.owl uberon/trunk/bridge/collected-teleost.owl uberon/trunk/bridge/collected-tetrapod.owl uberon/trunk/bridge/collected-vertebrate.owl uberon/trunk/bridge/collected-zfa-plus-mammal.owl Modified: uberon/trunk/bridge/collected-adult-mammal.owl =================================================================== --- uberon/trunk/bridge/collected-adult-mammal.owl 2012-07-17 20:45:53 UTC (rev 4439) +++ uberon/trunk/bridge/collected-adult-mammal.owl 2012-07-18 05:06:54 UTC (rev 4440) @@ -1,9 +1,29 @@ <?xml version="1.0"?> <rdf:RDF + xmlns:dc="http://purl.org/dc/elements/1.1/" + xmlns:foaf="http://xmlns.com/foaf/0.1/" + xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#" xmlns:owl="http://www.w3.org/2002/07/owl#" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" > <owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/bridge/collected-adult-mammal.owl"> + <foaf:homepage rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://uberon.org</foaf:homepage> + <rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://uberon.org#Multi-species_Collector_Modules</rdfs:seeAlso> + <rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://genomebiology.com/2012/13/1/R5</rdfs:seeAlso> + <dc:creator xml:lang="en">Uberon editors</dc:creator> + <dc:title xml:lang="en">Uberon importer for post-natal mammalian structures</dc:title> + <dc:description xml:lang="en"> + This is an ontology that collects all of the core uberon, plus the two main adult mammalian anatomies and bridging axioms that connects the two + </dc:description> + <rdfs:comment xml:lang="en"> + Uberon ontologies with the prefix 'collected' are ontologies + that import the core Uberon ontology together with one or more + external typically species-centric ontologies plus *bridging* + axioms that connect Uberon to the species-centric + ontology. Bridging axioms may be direct equivalence axioms, + taxonomic equivalence axioms, or subclass axioms. See the Uberon + homepage for details. + </rdfs:comment> <owl:imports rdf:resource="http://purl.obolibrary.org/obo/uberon.owl"/> <owl:imports rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-ma.owl"/> <owl:imports rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-fma.owl"/> Modified: uberon/trunk/bridge/collected-amniote.owl =================================================================== --- uberon/trunk/bridge/collected-amniote.owl 2012-07-17 20:45:53 UTC (rev 4439) +++ uberon/trunk/bridge/collected-amniote.owl 2012-07-18 05:06:54 UTC (rev 4440) @@ -1,9 +1,32 @@ <?xml version="1.0"?> <rdf:RDF + xmlns:dc="http://purl.org/dc/elements/1.1/" + xmlns:foaf="http://xmlns.com/foaf/0.1/" + xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#" xmlns:owl="http://www.w3.org/2002/07/owl#" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" > <owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/bridge/collected-amniote.owl"> + <foaf:homepage rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://uberon.org</foaf:homepage> + <rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://uberon.org#Multi-species_Collector_Modules</rdfs:seeAlso> + <rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://genomebiology.com/2012/13/1/R5</rdfs:seeAlso> + <dc:creator xml:lang="en">Uberon editors</dc:creator> + <dc:title xml:lang="en">Uberon importer for amniote structures</dc:title> + <dc:description xml:lang="en"> + This is an ontology that collects all of the core uberon, plus + any amniote species-specific ontologies. Currently there are no + non-mammalian amniote ontologies but in future this may import a + chick ontology. + </dc:description> + <rdfs:comment xml:lang="en"> + Uberon ontologies with the prefix 'collected' are ontologies + that import the core Uberon ontology together with one or more + external typically species-centric ontologies plus *bridging* + axioms that connect Uberon to the species-centric + ontology. Bridging axioms may be direct equivalence axioms, + taxonomic equivalence axioms, or subclass axioms. See the Uberon + homepage for details. + </rdfs:comment> <owl:imports rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/collected-mammal.owl"/> </owl:Ontology> </rdf:RDF> Modified: uberon/trunk/bridge/collected-embryonic-mammal.owl =================================================================== --- uberon/trunk/bridge/collected-embryonic-mammal.owl 2012-07-17 20:45:53 UTC (rev 4439) +++ uberon/trunk/bridge/collected-embryonic-mammal.owl 2012-07-18 05:06:54 UTC (rev 4440) @@ -1,9 +1,32 @@ <?xml version="1.0"?> <rdf:RDF + xmlns:dc="http://purl.org/dc/elements/1.1/" + xmlns:foaf="http://xmlns.com/foaf/0.1/" + xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#" xmlns:owl="http://www.w3.org/2002/07/owl#" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" > <owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/bridge/collected-embryonic-mammal.owl"> + <foaf:homepage rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://uberon.org</foaf:homepage> + <rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://uberon.org#Multi-species_Collector_Modules</rdfs:seeAlso> + <rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://genomebiology.com/2012/13/1/R5</rdfs:seeAlso> + <dc:creator xml:lang="en">Uberon editors</dc:creator> + <dc:title xml:lang="en">Uberon importer for embryonic mammal structures</dc:title> + <dc:description xml:lang="en"> + This is an ontology that collects all of the core uberon, plus + any mammalian embryonic ontologies. Note that currently for both + mouse and human, there are separate ontologies for both + embryonic and post-natal stages + </dc:description> + <rdfs:comment xml:lang="en"> + Uberon ontologies with the prefix 'collected' are ontologies + that import the core Uberon ontology together with one or more + external typically species-centric ontologies plus *bridging* + axioms that connect Uberon to the species-centric + ontology. Bridging axioms may be direct equivalence axioms, + taxonomic equivalence axioms, or subclass axioms. See the Uberon + homepage for details. + </rdfs:comment> <owl:imports rdf:resource="http://purl.obolibrary.org/obo/uberon.owl"/> <owl:imports rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-ehdaa2.owl"/> <owl:imports rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-emapa.owl"/> Modified: uberon/trunk/bridge/collected-eukaryote.owl =================================================================== --- uberon/trunk/bridge/collected-eukaryote.owl 2012-07-17 20:45:53 UTC (rev 4439) +++ uberon/trunk/bridge/collected-eukaryote.owl 2012-07-18 05:06:54 UTC (rev 4440) @@ -1,9 +1,31 @@ <?xml version="1.0"?> <rdf:RDF + xmlns:dc="http://purl.org/dc/elements/1.1/" + xmlns:foaf="http://xmlns.com/foaf/0.1/" + xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#" xmlns:owl="http://www.w3.org/2002/07/owl#" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" > <owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/bridge/collected-eukaryote.owl"> + <foaf:homepage rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://uberon.org</foaf:homepage> + <rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://uberon.org#Multi-species_Collector_Modules</rdfs:seeAlso> + <rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://genomebiology.com/2012/13/1/R5</rdfs:seeAlso> + <dc:creator xml:lang="en">Uberon editors</dc:creator> + <dc:title xml:lang="en">Uberon importer for embryonic mammal structures</dc:title> + <dc:description xml:lang="en"> + This is an ontology that collects all of the core uberon, plus + ALL gross anatomical ontologies for eukaryotes. This is the root + of the Uberon collector ontology tree. + </dc:description> + <rdfs:comment xml:lang="en"> + Uberon ontologies with the prefix 'collected' are ontologies + that import the core Uberon ontology together with one or more + external typically species-centric ontologies plus *bridging* + axioms that connect Uberon to the species-centric + ontology. Bridging axioms may be direct equivalence axioms, + taxonomic equivalence axioms, or subclass axioms. See the Uberon + homepage for details. + </rdfs:comment> <owl:imports rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/collected-opisthokont.owl"/> <owl:imports rdf:resource="http://purl.obolibrary.org/obo/po.owl"/> <owl:imports rdf:resource="http://purl.obolibrary.org/obo/ddanat.owl"/> Modified: uberon/trunk/bridge/collected-mammal.owl =================================================================== --- uberon/trunk/bridge/collected-mammal.owl 2012-07-17 20:45:53 UTC (rev 4439) +++ uberon/trunk/bridge/collected-mammal.owl 2012-07-18 05:06:54 UTC (rev 4440) @@ -1,9 +1,29 @@ <?xml version="1.0"?> <rdf:RDF + xmlns:dc="http://purl.org/dc/elements/1.1/" + xmlns:foaf="http://xmlns.com/foaf/0.1/" + xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#" xmlns:owl="http://www.w3.org/2002/07/owl#" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" > <owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/bridge/collected-mammal.owl"> + <foaf:homepage rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://uberon.org</foaf:homepage> + <rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://uberon.org#Multi-species_Collector_Modules</rdfs:seeAlso> + <rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://genomebiology.com/2012/13/1/R5</rdfs:seeAlso> + <dc:creator xml:lang="en">Uberon editors</dc:creator> + <dc:title xml:lang="en">Uberon importer for embryonic mammal structures</dc:title> + <dc:description xml:lang="en"> + Combines the 4 mammalian ontologies : mouse and human for both embryonic and adult stages + </dc:description> + <rdfs:comment xml:lang="en"> + Uberon ontologies with the prefix 'collected' are ontologies + that import the core Uberon ontology together with one or more + external typically species-centric ontologies plus *bridging* + axioms that connect Uberon to the species-centric + ontology. Bridging axioms may be direct equivalence axioms, + taxonomic equivalence axioms, or subclass axioms. See the Uberon + homepage for details. + </rdfs:comment> <owl:imports rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/collected-adult-mammal.owl"/> <owl:imports rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/collected-embryonic-mammal.owl"/> </owl:Ontology> Modified: uberon/trunk/bridge/collected-metazoa.owl =================================================================== --- uberon/trunk/bridge/collected-metazoa.owl 2012-07-17 20:45:53 UTC (rev 4439) +++ uberon/trunk/bridge/collected-metazoa.owl 2012-07-18 05:06:54 UTC (rev 4440) @@ -1,9 +1,30 @@ <?xml version="1.0"?> <rdf:RDF + xmlns:dc="http://purl.org/dc/elements/1.1/" + xmlns:foaf="http://xmlns.com/foaf/0.1/" + xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#" xmlns:owl="http://www.w3.org/2002/07/owl#" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" > <owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/bridge/collected-metazoa.owl"> + <foaf:homepage rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://uberon.org</foaf:homepage> + <rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://uberon.org#Multi-species_Collector_Modules</rdfs:seeAlso> + <rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://genomebiology.com/2012/13/1/R5</rdfs:seeAlso> + <dc:creator xml:lang="en">Uberon editors</dc:creator> + <dc:title xml:lang="en">Uberon importer for embryonic mammal structures</dc:title> + <dc:description xml:lang="en"> + This is an ontology that collects all of the core uberon, plus + ALL gross anatomical ontologies for metazoans. + </dc:description> + <rdfs:comment xml:lang="en"> + Uberon ontologies with the prefix 'collected' are ontologies + that import the core Uberon ontology together with one or more + external typically species-centric ontologies plus *bridging* + axioms that connect Uberon to the species-centric + ontology. Bridging axioms may be direct equivalence axioms, + taxonomic equivalence axioms, or subclass axioms. See the Uberon + homepage for details. + </rdfs:comment> <owl:imports rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/collected-vertebrate.owl"/> <owl:imports rdf:resource="http://purl.obolibrary.org/obo/fbbt.owl"/> <owl:imports rdf:resource="http://purl.obolibrary.org/obo/wbbt.owl"/> Modified: uberon/trunk/bridge/collected-opisthokont.owl =================================================================== --- uberon/trunk/bridge/collected-opisthokont.owl 2012-07-17 20:45:53 UTC (rev 4439) +++ uberon/trunk/bridge/collected-opisthokont.owl 2012-07-18 05:06:54 UTC (rev 4440) @@ -1,9 +1,31 @@ <?xml version="1.0"?> <rdf:RDF + xmlns:dc="http://purl.org/dc/elements/1.1/" + xmlns:foaf="http://xmlns.com/foaf/0.1/" + xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#" xmlns:owl="http://www.w3.org/2002/07/owl#" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" > <owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/bridge/collected-opisthokont.owl"> + <foaf:homepage rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://uberon.org</foaf:homepage> + <rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://uberon.org#Multi-species_Collector_Modules</rdfs:seeAlso> + <rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://genomebiology.com/2012/13/1/R5</rdfs:seeAlso> + <dc:creator xml:lang="en">Uberon editors</dc:creator> + <dc:title xml:lang="en">Uberon importer for embryonic mammal structures</dc:title> + <dc:description xml:lang="en"> + This is an ontology that collects all of the core uberon, plus + ALL gross anatomical ontologies for opisthokonts (i.e. the + fungal AO plus metazoan AOs). + </dc:description> + <rdfs:comment xml:lang="en"> + Uberon ontologies with the prefix 'collected' are ontologies + that import the core Uberon ontology together with one or more + external typically species-centric ontologies plus *bridging* + axioms that connect Uberon to the species-centric + ontology. Bridging axioms may be direct equivalence axioms, + taxonomic equivalence axioms, or subclass axioms. See the Uberon + homepage for details. + </rdfs:comment> <owl:imports rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/collected-metazoa.owl"/> <owl:imports rdf:resource="http://purl.obolibrary.org/obo/fao.owl"/> </owl:Ontology> Modified: uberon/trunk/bridge/collected-teleost.owl =================================================================== --- uberon/trunk/bridge/collected-teleost.owl 2012-07-17 20:45:53 UTC (rev 4439) +++ uberon/trunk/bridge/collected-teleost.owl 2012-07-18 05:06:54 UTC (rev 4440) @@ -1,5 +1,8 @@ <?xml version="1.0"?> <rdf:RDF + xmlns:dc="http://purl.org/dc/elements/1.1/" + xmlns:foaf="http://xmlns.com/foaf/0.1/" + xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#" xmlns:owl="http://www.w3.org/2002/07/owl#" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" > Modified: uberon/trunk/bridge/collected-tetrapod.owl =================================================================== --- uberon/trunk/bridge/collected-tetrapod.owl 2012-07-17 20:45:53 UTC (rev 4439) +++ uberon/trunk/bridge/collected-tetrapod.owl 2012-07-18 05:06:54 UTC (rev 4440) @@ -1,5 +1,8 @@ <?xml version="1.0"?> <rdf:RDF + xmlns:dc="http://purl.org/dc/elements/1.1/" + xmlns:foaf="http://xmlns.com/foaf/0.1/" + xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#" xmlns:owl="http://www.w3.org/2002/07/owl#" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" > Modified: uberon/trunk/bridge/collected-vertebrate.owl =================================================================== --- uberon/trunk/bridge/collected-vertebrate.owl 2012-07-17 20:45:53 UTC (rev 4439) +++ uberon/trunk/bridge/collected-vertebrate.owl 2012-07-18 05:06:54 UTC (rev 4440) @@ -1,9 +1,30 @@ <?xml version="1.0"?> <rdf:RDF + xmlns:dc="http://purl.org/dc/elements/1.1/" + xmlns:foaf="http://xmlns.com/foaf/0.1/" + xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#" xmlns:owl="http://www.w3.org/2002/07/owl#" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" > <owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/bridge/collected-vertebrate.owl"> + <foaf:homepage rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://uberon.org</foaf:homepage> + <rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://uberon.org#Multi-species_Collector_Modules</rdfs:seeAlso> + <rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://genomebiology.com/2012/13/1/R5</rdfs:seeAlso> + <dc:creator xml:lang="en">Uberon editors</dc:creator> + <dc:title xml:lang="en">Uberon importer for embryonic mammal structures</dc:title> + <dc:description xml:lang="en"> + This is an ontology that collects all of the core uberon, plus + all gross anatomical ontologies for vertebrates + </dc:description> + <rdfs:comment xml:lang="en"> + Uberon ontologies with the prefix 'collected' are ontologies + that import the core Uberon ontology together with one or more + external typically species-centric ontologies plus *bridging* + axioms that connect Uberon to the species-centric + ontology. Bridging axioms may be direct equivalence axioms, + taxonomic equivalence axioms, or subclass axioms. See the Uberon + homepage for details. + </rdfs:comment> <owl:imports rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/collected-tetrapod.owl"/> <owl:imports rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/collected-teleost.owl"/> </owl:Ontology> Modified: uberon/trunk/bridge/collected-zfa-plus-mammal.owl =================================================================== --- uberon/trunk/bridge/collected-zfa-plus-mammal.owl 2012-07-17 20:45:53 UTC (rev 4439) +++ uberon/trunk/bridge/collected-zfa-plus-mammal.owl 2012-07-18 05:06:54 UTC (rev 4440) @@ -1,9 +1,30 @@ <?xml version="1.0"?> <rdf:RDF + xmlns:dc="http://purl.org/dc/elements/1.1/" + xmlns:foaf="http://xmlns.com/foaf/0.1/" + xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#" xmlns:owl="http://www.w3.org/2002/07/owl#" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" > <owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/bridge/collected-zfa-plus-mammal.owl"> + <foaf:homepage rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://uberon.org</foaf:homepage> + <rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://uberon.org#Multi-species_Collector_Modules</rdfs:seeAlso> + <rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://genomebiology.com/2012/13/1/R5</rdfs:seeAlso> + <dc:creator xml:lang="en">Uberon editors</dc:creator> + <dc:title xml:lang="en">Uberon importer for embryonic mammal structures</dc:title> + <dc:description xml:lang="en"> + This is an ontology that collects all of the core uberon, plus + the core model organism vertebrate ontologies + </dc:description> + <rdfs:comment xml:lang="en"> + Uberon ontologies with the prefix 'collected' are ontologies + that import the core Uberon ontology together with one or more + external typically species-centric ontologies plus *bridging* + axioms that connect Uberon to the species-centric + ontology. Bridging axioms may be direct equivalence axioms, + taxonomic equivalence axioms, or subclass axioms. See the Uberon + homepage for details. + </rdfs:comment> <owl:imports rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/collected-mammal.owl"/> <owl:imports rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-zfa.owl"/> <owl:imports rdf:resource="http://purl.obolibrary.org/obo/zfa.owl"/> This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site. |