Re: [Obo-discuss] [Obo-phenotype] Ontology about genetic background

[Rachel D. (Genetics) <rd...@ge...>]

Chris wrote

> Some of what you are after is in the pan-=20
> flybase ontology. The parts related to genetic context are being =20
> factored out into a separate ontology. As far as I know this is not =20
> yet available on obo.

see
http://obo.sourceforge.net/cgi-bin/detail.cgi?flybase_vocab

I think this is what Chris refers to

Rachel.



> From: chris mungall <cj...@fr...>
> Date: Wed, 26 Jul 2006 09:58:24 -0700
> To: obo...@li...

> Cc: obo...@li...
> Subject: Re: [Obo-phenotype] [Obo-discuss] Ontology about genetic backgro=
und

>=20
>=20
> Hi Xi
>=20
> I'm cross-posting to obo-phenotype as the people there are interested =20
> in this kind of thing too. Some of what you are after is in the pan-=20
> flybase ontology. The parts related to genetic context are being =20
> factored out into a separate ontology. As far as I know this is not =20
> yet available on obo. I'm not sure if this covers the various =20
> experimental methods for inducing mutation.
>=20
> Cheers
> Chris
>=20
> On Jul 20, 2006, at 9:14 AM, <xi...@sy...> =20
> <xi...@sy...> wrote:
>=20
> > Hello,
> >
> > I am just wondering if anybody has developed ontologies for genetic =20
> > background information?  For example, wildtype, mutants (different =20
> > types, like EMS, spontaneous, irradiation induced=85.), or transgenic =
=20
> > (down- or up-regulation, constitutive or tissue specific, etc).
> >
> > Thanks, Xi
> >
> > Xi Chen
> > Lead Selection Manager
> > Applied Genomics Group
> > Syngenta Biotechnology, Inc.
> > 3054 Cornwallis Rd.
> > Research Triangle Park, NC  27709
> >
> > ph. 919-765-5035
> > fax: 919-541-8585
> >
> >
> > ----------------------------------------------------------------------=
=20
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>=20
>=20
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