[Obo-phenotype-commits] obo/ontology/phenotype quality_edit.obo, NONE, 1.1

[Georgios V. G. <gk...@us...>]

Update of /cvsroot/obo/obo/ontology/phenotype
In directory vz-cvs-4.sog:/tmp/cvs-serv3813

Added Files:
	quality_edit.obo 
Log Message:
edit version of quality

--- NEW FILE: quality_edit.obo ---
format-version: 1.2
date: 18:04:2011 17:31
saved-by: George Gkoutos
auto-generated-by: OBO-Edit 2.1-beta6
subsetdef: abnormal_slim "Abnormal/normal slim"
subsetdef: absent_slim "Absent/present slim"
subsetdef: attribute_slim "Attribute slim"
subsetdef: cell_quality "cell_quality"
subsetdef: disposition_slim "Disposition slim"
subsetdef: relational_slim "Relational slim: types of quality that require an additional entity in order to exist"
subsetdef: scalar_slim "Scalar slim"
subsetdef: value_slim "Value slim"
default-namespace: quality
namespace-id-rule: * PATO:$sequence(7,0,9999999)$ [Term]
id: PATO:0000000
name: pato
is_obsolete: true

[Term]
[...16113 lines suppressed...]
comment: There are frequently two ways to state the same thing: we can say 'spermatocyte lacks asters' or 'asters absent from spermatocyte'. In this case the quality is 'lacking all parts of type' - it is a (relational) quality of the spermatocyte, and it is with respect to instances of 'aster'. One of the popular requirements of PATO is that it continue to support 'absent', so we need to relate statements which use this quality to the 'lacking all parts of type' quality.

[Typedef]
id: similar_in_magnitude_relative_to
name: similar_in_magnitude_relative_to
def: "q1 similar_in_magnitude_relative_to q2 if and only if magnitude(q1) =~ magnitude(q2). Here, magnitude(q) is a function that maps a quality to a unit-invariant scale." [PATOC:CJM]
domain: PATO:0000001 ! quality
range: PATO:0000001 ! quality

[Typedef]
id: singly_occurring_form_of
name: singly_occurring_form_of
comment: PATO divides qualities between normal (monadic, singly-occurring) qualities and relational qualities. Relational qualities stand in the 'towards' relation with respect to some additional entity. For example, The sensitivity of an eye towards red light. In some cases we want to represent a quality such as 'protruding' in both monadic and relational branches. We use this relation to link them.
synonym: "monadic_form_of" EXACT []

[Typedef]
id: towards
name: towards
comment: relation binding a relational quality or disposition to the relevant type of entity