Re: [Obo-human-phenotype] Group call Tuesday June 13th

[Chris M. <cj...@be...>]

I've placed the agenda here
http://berkeleybop.org/mediawiki/index.php/PATO_Call_2010_07_13

speak to you all in a few minutes!

On Jul 13, 2010, at 12:31 AM, Dr. med. Sandra Dölken wrote:

> Yes I think so - that would be 5 pm in Germany.
>
>>
>> Am I correct in thinking the call is at 8am pacific time?
>>
>> On Jul 6, 2010, at 5:24 PM, Suzanna Lewis wrote:
>>
>>> Hello everyone,
>>>
>>> Chris will be leading the call next Tuesday. (I'm chairing a session
>>> at ISMB and so I must send regrets).
>>>
>>> For the discussion:
>>>
>>> 1. There were several questions we had for George from last month
>>> that were deferred which should be discussed on this call.
>>> 2. Response to Paula's question/suggestions on shape.
>>> 3. Annotation status
>>> 4. I've created a wiki page for the September Workshop here:
>>> http://berkeleybop.org/mediawiki/index.php/Phenotype_Workshop_September_2010/
>>> Please add items we need to discuss to this page.
>>>
>>> In addition here are the actions/notes from last time to go over.
>>>> Annotation status
>>>> -  progress on TGF-beta genes
>>>>
>>>> - Chris will rerun the Washington on the current set of annotations
>>>> from the above.
>>>>
>>>> - Sandra to review priorities of orphan diseases with phenotypes
>>>> after Chris and Sebastian nail the final list down.
>>>>
>>>> Uberon paper
>>>> - Suzi and Chris will send latest version this week.
>>>
>>> Done
>>>
>>>> - meeting on Friday morning (Paul, Michael, Chris, Damian, and Chao
>>>> Kung) to consider the front end.
>>>>
>>>> - They will be looking at Damian's front end. A web application
>>>> that looks at shared terms (strings) across ontology and give
>>>> counts. Doesn't use structure of ontology or annotations. Used for
>>>> matching one ontology to another, an inter-ontology mapping tool.
>>>> (unnamed as yet).
>>>
>>>> Text mining
>>>> Sandra says the text mining of OMIM (entire text) for annotation by
>>>> Sebastian was done only once. It is unclear which one to use
>>>> because the counts of annotations are quite different (svn or
>>>> phenotype commons?). Chris will send email (*done) and speak to
>>>> Sebastian to figure out what is going on and which is the correct
>>>> version to load into OBD.
>>>>
>>>
>>>
>>> Call in information.
>>>
>>> US Toll-free: 866-740-1260
>>> Germany Toll-free: 0800 183-0373
>>> UK Toll-free: 0800 917-0696
>>>
>>> Enter your access code 4867508, followed by ?#?
>>>
>>> ------------------------------------------------------------------------------
>>> This SF.net email is sponsored by Sprint
>>> What will you do first with EVO, the first 4G phone?
>>> Visit sprint.com/first -- http://p.sf.net/sfu/sprint-com-first
>>> _______________________________________________
>>> Obo-human-phenotype mailing list
>>> Obo...@li...
>>> https://lists.sourceforge.net/lists/listinfo/obo-human-phenotype
>>>
>>
>>
>> ------------------------------------------------------------------------------
>> This SF.net email is sponsored by Sprint
>> What will you do first with EVO, the first 4G phone?
>> Visit sprint.com/first -- http://p.sf.net/sfu/sprint-com-first
>> _______________________________________________
>> Obo-human-phenotype mailing list
>> Obo...@li...
>> https://lists.sourceforge.net/lists/listinfo/obo-human-phenotype
>>
>
>
> Dr. med. Sandra Dölken
> Charité Universitätsmedizin Berlin
> Campus Virchow Klinikum
> Institut für Medizinische Genetik
> Augustenburger Platz 1
> 13353 Berlin
> Germany
> phone: +49(0)30 450 569 132
> fax: +49(0)30 450 569 914
> email: san...@ch...
> http://genetik.charite.de/institut/
>
>