[Obo-phenotype-commits] obo/ontology/phenotype mammalian_phenotype.obo, 1.353, 1.354 mosquito_insecticide_resistance.obo, 1.827, 1.828

[Seth C. <sjc...@us...>]

Update of /cvsroot/obo/obo/ontology/phenotype
In directory sfp-cvsdas-4.v30.ch3.sourceforge.com:/tmp/cvs-serv3499/phenotype

Modified Files:
	mammalian_phenotype.obo mosquito_insecticide_resistance.obo 
Log Message:
Automated file update

Index: mammalian_phenotype.obo
===================================================================
RCS file: /cvsroot/obo/obo/ontology/phenotype/mammalian_phenotype.obo,v
retrieving revision 1.353
retrieving revision 1.354
diff -C2 -d -r1.353 -r1.354
*** mammalian_phenotype.obo	23 May 2010 07:02:14 -0000	1.353
--- mammalian_phenotype.obo	31 May 2010 07:02:49 -0000	1.354
***************
*** 1,5 ****
  format-version: 1.2
! date: 21:05:2010 16:23
! auto-generated-by: OBO-Edit 2.1-beta4
  default-namespace: MPheno.ontology
  remark: The Mammalian Phenotype Ontology is being developed by Cynthia L. Smith, Susan M. Bello, Carroll W. Goldsmith and Janan T. Eppig, as part of the Mouse Genome Database (MGD) Project, Mouse Genome Informatics (MGI), The Jackson Laboratory, Bar Harbor, ME. Copyright 2007 The Jackson Laboratory. This file contains pre-coordinated phenotype terms, definitions and synonyms that can be used to describe mammalian phenotypes. The ontology is represented as a directed acyclic graph (DAG). It organizes phenotype terms into major biological system headers such as nervous system and respiratory system.  Behavior and lethality terms are also represented. This ontology is currently under development. Daily updates are available at the Mouse Genome Informatics (MGI) ftp site (ftp://ftp.informatics.jax.org/pub/reports/index.html#pheno) as well as the OBO Foundry site (http://obofoundry.org/). Questions, comments and suggestions are welcome, and should be directed to ph...@in... MGD is funded by NIH/NHGRI grant HG000330.
--- 1,6 ----
  format-version: 1.2
! date: 28:05:2010 16:41
! saved-by: mgi
! auto-generated-by: OBO-Edit 2.0
  default-namespace: MPheno.ontology
  remark: The Mammalian Phenotype Ontology is being developed by Cynthia L. Smith, Susan M. Bello, Carroll W. Goldsmith and Janan T. Eppig, as part of the Mouse Genome Database (MGD) Project, Mouse Genome Informatics (MGI), The Jackson Laboratory, Bar Harbor, ME. Copyright 2007 The Jackson Laboratory. This file contains pre-coordinated phenotype terms, definitions and synonyms that can be used to describe mammalian phenotypes. The ontology is represented as a directed acyclic graph (DAG). It organizes phenotype terms into major biological system headers such as nervous system and respiratory system.  Behavior and lethality terms are also represented. This ontology is currently under development. Daily updates are available at the Mouse Genome Informatics (MGI) ftp site (ftp://ftp.informatics.jax.org/pub/reports/index.html#pheno) as well as the OBO Foundry site (http://obofoundry.org/). Questions, comments and suggestions are welcome, and should be directed to ph...@in... MGD is funded by NIH/NHGRI grant HG000330.
***************
*** 1957,1961 ****
  name: abnormal bile color
  def: "a change in the color of the bile from the normal yellowish brown or green" [J:80519]
! is_a: MP:0005085 ! abnormal gall bladder physiology
  
  [Term]
--- 1958,1962 ----
  name: abnormal bile color
  def: "a change in the color of the bile from the normal yellowish brown or green" [J:80519]
! is_a: MP:0005085 ! abnormal gallbladder physiology
  
  [Term]
***************
*** 18093,18097 ****
  synonym: "cholelithiasis" EXACT []
  synonym: "gall stone" EXACT []
! is_a: MP:0005085 ! abnormal gall bladder physiology
  
  [Term]
--- 18094,18098 ----
  synonym: "cholelithiasis" EXACT []
  synonym: "gall stone" EXACT []
! is_a: MP:0005085 ! abnormal gallbladder physiology
  
  [Term]
***************
*** 20999,21014 ****
  [Term]
  id: MP:0003250
! name: absent gall bladder
  def: "absence of the organ which serves as a storage reservoir for bile" [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", NCBI:matt "Matthew Mailman"]
  synonym: "absent cholecyst" EXACT []
! synonym: "absent gallbladder" EXACT []
! is_a: MP:0005084 ! abnormal gall bladder morphology
  
  [Term]
  id: MP:0003251
! name: gall bladder inflammation
  def: "local accumulation of fluid, plasma proteins, and leukocytes in the gall bladder" [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", NCBI:matt "Matthew Mailman"]
  is_a: MP:0001846 ! increased inflammatory response
! is_a: MP:0005085 ! abnormal gall bladder physiology
  
  [Term]
--- 21000,21016 ----
  [Term]
  id: MP:0003250
! name: absent gallbladder
  def: "absence of the organ which serves as a storage reservoir for bile" [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", NCBI:matt "Matthew Mailman"]
  synonym: "absent cholecyst" EXACT []
! synonym: "absent gall bladder" EXACT []
! is_a: MP:0005084 ! abnormal gallbladder morphology
  
  [Term]
  id: MP:0003251
! name: gallbladder inflammation
  def: "local accumulation of fluid, plasma proteins, and leukocytes in the gall bladder" [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", NCBI:matt "Matthew Mailman"]
+ synonym: "gall bladder inflammation" EXACT []
  is_a: MP:0001846 ! increased inflammatory response
! is_a: MP:0005085 ! abnormal gallbladder physiology
  
  [Term]
***************
*** 31548,31552 ****
  def: "any anomaly in the quantity or rate of bile secreted through the bile ducts in a given length of time" [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"]
  is_a: MP:0003252 ! abnormal bile duct physiology
! is_a: MP:0005085 ! abnormal gall bladder physiology
  
  [Term]
--- 31550,31554 ----
  def: "any anomaly in the quantity or rate of bile secreted through the bile ducts in a given length of time" [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"]
  is_a: MP:0003252 ! abnormal bile duct physiology
! is_a: MP:0005085 ! abnormal gallbladder physiology
  
  [Term]
***************
*** 31554,31558 ****
  name: abnormal bile composition
  def: "any alteration in the chemical make up of the greenish-yellow fluid secreted by the liver; normally contains bile acids and salts such as sodium glycocholate and sodium taurocholate as well as cholesterol, biliverdin and bilirubin, mucus, fat, lecithin, and cells and cellular debris" [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"]
! is_a: MP:0005085 ! abnormal gall bladder physiology
  
  [Term]
--- 31556,31560 ----
  name: abnormal bile composition
  def: "any alteration in the chemical make up of the greenish-yellow fluid secreted by the liver; normally contains bile acids and salts such as sodium glycocholate and sodium taurocholate as well as cholesterol, biliverdin and bilirubin, mucus, fat, lecithin, and cells and cellular debris" [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"]
! is_a: MP:0005085 ! abnormal gallbladder physiology
  
  [Term]
***************
*** 33882,33886 ****
  [Term]
  id: MP:0005084
! name: abnormal gall bladder morphology
  def: "any structural anomaly of the organ which serves as a storage reservoir for bile" [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MESH:A03.159.439]
  synonym: "abnormal cholecyst morphology" RELATED []
--- 33884,33888 ----
  [Term]
  id: MP:0005084
! name: abnormal gallbladder morphology
  def: "any structural anomaly of the organ which serves as a storage reservoir for bile" [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MESH:A03.159.439]
  synonym: "abnormal cholecyst morphology" RELATED []
***************
*** 33893,33899 ****
  [Term]
  id: MP:0005085
! name: abnormal gall bladder physiology
  def: "anomalous action or function of the organ that stores and concentrates bile" [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"]
  synonym: "abnormal gall bladder function" EXACT []
  synonym: "abnormal gallbladder function" EXACT []
  is_a: MP:0002139 ! abnormal liver/biliary system physiology
--- 33895,33902 ----
  [Term]
  id: MP:0005085
! name: abnormal gallbladder physiology
  def: "anomalous action or function of the organ that stores and concentrates bile" [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"]
  synonym: "abnormal gall bladder function" EXACT []
+ synonym: "abnormal gall bladder physiology" EXACT []
  synonym: "abnormal gallbladder function" EXACT []
  is_a: MP:0002139 ! abnormal liver/biliary system physiology
***************
*** 38368,38376 ****
  [Term]
  id: MP:0005675
! name: small gall bladder
  def: "reduced size of the gall bladder, the organ that serves as a storage reservoir for bile" [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:anna "Anna V. Anagnostopoulos, Mouse Genome Informatics Curator"]
  synonym: "small cholecyst" EXACT []
! synonym: "small gallbladder" EXACT []
! is_a: MP:0005084 ! abnormal gall bladder morphology
  
  [Term]
--- 38371,38379 ----
  [Term]
  id: MP:0005675
! name: small gallbladder
  def: "reduced size of the gall bladder, the organ that serves as a storage reservoir for bile" [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:anna "Anna V. Anagnostopoulos, Mouse Genome Informatics Curator"]
  synonym: "small cholecyst" EXACT []
! synonym: "small gall bladder" EXACT []
! is_a: MP:0005084 ! abnormal gallbladder morphology
  
  [Term]
***************
*** 53255,53273 ****
  [Term]
  id: MP:0009342
! name: enlarged gall bladder
  def: "increased size of the gall bladder, the organ that serves as a storage reservoir for bile" [MGI:anna "Anna V. Anagnostopoulos, Mouse Genome Informatics Curator"]
  synonym: "enlarged cholecyst" EXACT []
! synonym: "enlarged gallbladder" EXACT []
! is_a: MP:0005084 ! abnormal gall bladder morphology
  
  [Term]
  id: MP:0009343
! name: dilated gall bladder
  def: "abnormal distention of the gall bladder due to accumulation of fluid or bile" [MGI:anna "Anna V. Anagnostopoulos, Mouse Genome Informatics Curator"]
  synonym: "dilated cholecyst" RELATED []
! synonym: "dilated gallbladder" EXACT []
  synonym: "distended gall bladder" EXACT []
  synonym: "gall bladder dilation" EXACT []
! is_a: MP:0005084 ! abnormal gall bladder morphology
  
  [Term]
--- 53258,53276 ----
  [Term]
  id: MP:0009342
! name: enlarged gallbladder
  def: "increased size of the gall bladder, the organ that serves as a storage reservoir for bile" [MGI:anna "Anna V. Anagnostopoulos, Mouse Genome Informatics Curator"]
  synonym: "enlarged cholecyst" EXACT []
! synonym: "enlarged gall bladder" EXACT []
! is_a: MP:0005084 ! abnormal gallbladder morphology
  
  [Term]
  id: MP:0009343
! name: dilated gallbladder
  def: "abnormal distention of the gall bladder due to accumulation of fluid or bile" [MGI:anna "Anna V. Anagnostopoulos, Mouse Genome Informatics Curator"]
  synonym: "dilated cholecyst" RELATED []
! synonym: "dilated gall bladder" EXACT []
  synonym: "distended gall bladder" EXACT []
  synonym: "gall bladder dilation" EXACT []
! is_a: MP:0005084 ! abnormal gallbladder morphology
  
  [Term]
***************
*** 54161,54169 ****
  [Term]
  id: MP:0009465
! name: abnormal gall bladder infundibulum morphology
  def: "any structural anomaly of the tapering portion of the gall bladder that narrows to form the neck and cystic duct" [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"]
  synonym: "abnormal infundibulum of gallbladder " EXACT []
  synonym: "abnormal infundibulum vesicae biliaris" EXACT []
! is_a: MP:0005084 ! abnormal gall bladder morphology
  
  [Term]
--- 54164,54173 ----
  [Term]
  id: MP:0009465
! name: abnormal gallbladder infundibulum morphology
  def: "any structural anomaly of the tapering portion of the gall bladder that narrows to form the neck and cystic duct" [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"]
+ synonym: "abnormal gall bladder infundibulum morphology" EXACT []
  synonym: "abnormal infundibulum of gallbladder " EXACT []
  synonym: "abnormal infundibulum vesicae biliaris" EXACT []
! is_a: MP:0005084 ! abnormal gallbladder morphology
  
  [Term]
***************
*** 54373,54380 ****
  [Term]
  id: MP:0009492
! name: abnormal gall bladder epithelium morphology
  def: "any structural anomaly of the simple columnar epithelial lining of the gall bladder" [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"]
! synonym: "abnormal gallbladder epithelium morphology" EXACT []
! is_a: MP:0005084 ! abnormal gall bladder morphology
  
  [Term]
--- 54377,54384 ----
  [Term]
  id: MP:0009492
! name: abnormal gallbladder epithelium morphology
  def: "any structural anomaly of the simple columnar epithelial lining of the gall bladder" [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"]
! synonym: "abnormal gall bladder epithelium morphology" EXACT []
! is_a: MP:0005084 ! abnormal gallbladder morphology
  
  [Term]
***************
*** 54384,54388 ****
  synonym: "abnormal cystic gall duct morphology" EXACT []
  synonym: "abnormal ductus cysticus morphology" EXACT []
! is_a: MP:0005084 ! abnormal gall bladder morphology
  is_a: MP:0009498 ! abnormal extrahepatic bile duct morphology
  
--- 54388,54392 ----
  synonym: "abnormal cystic gall duct morphology" EXACT []
  synonym: "abnormal ductus cysticus morphology" EXACT []
! is_a: MP:0005084 ! abnormal gallbladder morphology
  is_a: MP:0009498 ! abnormal extrahepatic bile duct morphology
  
***************
*** 60247,60250 ****
--- 60251,60326 ----
  creation_date: 2010-05-21T03:14:57Z
  
+ [Term]
+ id: MP:0010165
+ name: abnormal response to stress-induced hyperthermia
+ def: "any anomaly in the expected increase in core body termperature in response to stress or anticipatory anxiety" [PMID:18722480]
+ synonym: "abnormal SIH response" EXACT []
+ is_a: MP:0001777 ! abnormal body temperature regulation
+ created_by: mgi
+ creation_date: 2010-05-28T02:42:40Z
+ 
+ [Term]
+ id: MP:0010166
+ name: increased response to stress-induced hyperthermia
+ def: "greater increase or faster than expected increase in core body termperature in response to stress or anticipatory anxiety" [PMID:18722480]
+ synonym: "increased SIH response" EXACT []
+ is_a: MP:0010165 ! abnormal response to stress-induced hyperthermia
+ created_by: mgi
+ creation_date: 2010-05-28T02:47:58Z
+ 
+ [Term]
+ id: MP:0010167
+ name: decreased response to stress-induced hyperthermia
+ def: "reduction or absence of the expected increase in core body termperature in response to stress or anticipatory anxiety" [PMID:18722480]
+ synonym: "decreased SIH response" EXACT []
+ is_a: MP:0010165 ! abnormal response to stress-induced hyperthermia
+ created_by: mgi
+ creation_date: 2010-05-28T02:48:26Z
+ 
+ [Term]
+ id: MP:0010168
+ name: increased CD4-positive, CD25-positive, alpha-beta regulatory T cell number
+ def: "a greater number of the CD4-positive, CD25-positive T cell subset which regulates overall immune responses as well as the responses of other T cell subsets through direct cell-cell contact and cytokine release" [ISBN:0781735149]
+ synonym: "increased CD4-positive, CD25-positive, alpha-beta regulatory T lymphocyte number" EXACT []
+ synonym: "increased CD4-positive, CD25-positive, alpha-beta regulatory T-cell number" EXACT []
+ synonym: "increased CD4-positive, CD25-positive, alpha-beta regulatory T-lymphocyte number" EXACT []
+ synonym: "increased CD4-positive, CD25-positive, alpha-beta Treg number" EXACT []
+ synonym: "increased suppressor T cell number" BROAD []
+ synonym: "increased suppressor T lymphocyte number" BROAD []
+ synonym: "increased suppressor T-cell number" BROAD []
+ synonym: "increased suppressor T-lymphocyte number" BROAD []
+ xref: CL:0000792
+ is_a: MP:0008074 ! increased CD4-positive T cell number
+ is_a: MP:0008397 ! abnormal CD4-positive, CD25-positive, alpha-beta regulatory T cell morphology
+ created_by: mgi
+ creation_date: 2010-05-28T03:27:31Z
+ 
+ [Term]
+ id: MP:0010169
+ name: decreased CD4-positive, CD25-positive, alpha-beta regulatory T cell number
+ def: "a reduction in the number of the CD4-positive, CD25-positive T cell subset which regulates overall immune responses as well as the responses of other T cell subsets through direct cell-cell contact and cytokine release" [ISBN:0781735149]
+ synonym: "decreased CD4-positive, CD25-positive, alpha-beta regulatory T lymphocyte number" EXACT []
+ synonym: "decreased CD4-positive, CD25-positive, alpha-beta regulatory T-cell number" EXACT []
+ synonym: "decreased CD4-positive, CD25-positive, alpha-beta regulatory T-lymphocyte number" EXACT []
+ synonym: "decreased CD4-positive, CD25-positive, alpha-beta Treg number" EXACT []
+ synonym: "decreased suppressor T cell number" BROAD []
+ synonym: "decreased suppressor T lymphocyte number" BROAD []
+ synonym: "decreased suppressor T-cell number" BROAD []
+ synonym: "decreased suppressor T-lymphocyte number" BROAD []
+ synonym: "reduced CD4-positive, CD25-positive, alpha-beta regulatory T cell number" EXACT []
+ synonym: "reduced CD4-positive, CD25-positive, alpha-beta regulatory T lymphocyte number" EXACT []
+ synonym: "reduced CD4-positive, CD25-positive, alpha-beta regulatory T-cell number" EXACT []
+ synonym: "reduced CD4-positive, CD25-positive, alpha-beta regulatory T-lymphocyte number" EXACT []
+ synonym: "reduced CD4-positive, CD25-positive, alpha-beta Treg number" EXACT []
+ synonym: "reduced suppressor T cell number" BROAD []
+ synonym: "reduced suppressor T lymphocyte number" BROAD []
+ synonym: "reduced suppressor T-cell number" BROAD []
+ synonym: "reduced suppressor T-lymphocyte number" BROAD []
+ xref: CL:0000792
+ is_a: MP:0008075 ! decreased CD4-positive T cell number
+ is_a: MP:0008397 ! abnormal CD4-positive, CD25-positive, alpha-beta regulatory T cell morphology
+ created_by: mgi
+ creation_date: 2010-05-28T03:28:42Z
+ 
  [Typedef]
  id: part_of