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[Obo-phenotype-commits] obo/ontology/phenotype human_disease.obo, 1.168, 1.169 mosquito_insecticide_resistance.obo, 1.778, 1.779
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From: Seth C. <sjc...@us...> - 2010-04-06 07:02:27
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Update of /cvsroot/obo/obo/ontology/phenotype In directory sfp-cvsdas-4.v30.ch3.sourceforge.com:/tmp/cvs-serv29642/phenotype Modified Files: human_disease.obo mosquito_insecticide_resistance.obo Log Message: Automated file update Index: human_disease.obo =================================================================== RCS file: /cvsroot/obo/obo/ontology/phenotype/human_disease.obo,v retrieving revision 1.168 retrieving revision 1.169 diff -C2 -d -r1.168 -r1.169 *** human_disease.obo 3 Apr 2010 07:02:24 -0000 1.168 --- human_disease.obo 6 Apr 2010 07:02:15 -0000 1.169 *************** *** 1,6 **** format-version: 1.2 ! date: 02:04:2010 16:09 ! saved-by: lschriml ! auto-generated-by: OBO-Edit 2.0 default-namespace: disease_ontology remark: This is an alpha version and is only for experimental implementation. --- 1,6 ---- format-version: 1.2 ! date: 05:04:2010 16:46 ! saved-by: laronhughes ! auto-generated-by: OBO-Edit 2.1-beta3 default-namespace: disease_ontology remark: This is an alpha version and is only for experimental implementation. *************** *** 4044,4048 **** id: DOID:0050229 name: Escherichia coli dysentery ! def: "A dysentery that involves infection of the intestine caused by enteroinvasive Escherichia coli or enterohemorrhagic Escherichia coli. The symptoms include fever, bloody diarrhea, and dehydration." [url:http\://emedicine.medscape.com/article/217485-overview] is_a: DOID:12384 ! dysentery is_a: DOID:2905 ! Escherichia coli infectious disease --- 4044,4048 ---- id: DOID:0050229 name: Escherichia coli dysentery ! def: "A dysentery that involves infection of the intestine caused by enteroinvasive Escherichia coli or enterohemorrhagic Escherichia coli. The symptoms include fever, bloody diarrhea, and dehydration." [url:http\://emedicine.medscape.com/article/217485-overview, url:http\://www.jstor.org/stable/pdfplus/30112505.pdf] is_a: DOID:12384 ! dysentery is_a: DOID:2905 ! Escherichia coli infectious disease *************** *** 55437,55440 **** --- 55437,55441 ---- id: DOID:10957 name: Enterobacter aerogenes intestinal infectious disease + def: "An intestinal infectious disease that involves infection of the intestine by nosocomial bacterium Enterobacter aerogenes, which results in formation of ulcers." [url:http\://emedicine.medscape.com/article/216845-overview] synonym: "intestinal infection due to aerobacter aerogenes" EXACT [ICD9CM_2006:008.2] synonym: "intestinal infection due to Enterobacter aerogenes (disorder)" EXACT [SNOMEDCT_2005_07_31:9689002] *************** *** 55505,55508 **** --- 55506,55510 ---- id: DOID:10959 name: Escherichia coli intestinal infectious disease + def: "An intestinal infectious disease that involves infection of the intestine by the bacterium Escherichia coli, caused by consumption of contaminated food and water. Some strains of Escherichia coli produce Shiga toxin, which cause severe illness. The symptoms include severe stomach cramps, fever, diarrhea (sometimes bloody), and vomiting." [url:http\://www.cdc.gov/nczved/divisions/dfbmd/diseases/ecoli_o157h7/index.html, url:http\://www.who.int/mediacentre/factsheets/fs125/en/] synonym: "intestinal infectious disease due to Escherichia coli" EXACT [] xref: ICD9CM_1986:008.0 *************** *** 156792,156795 **** --- 156794,156798 ---- id: DOID:13285 name: enteroinvasive Escherichia coli infectious disease + def: "An Escherichia coli intestinal infectious disease that involves infection of the intestine caused by a serological subgroup of Escherichia coli called enteroinvasive Escherichia coli (EIEC), which penetrate and multiply within epithelial cells of the colon causing cell destruction. They do not produce toxins but they possess a specific adhesin, which is an outer membrane protein. The symptoms include dysentery-like diarrhea with fever." [url:http\://www.textbookofbacteriology.net/e.coli_4.html] synonym: "Enteroinvasive Escherichia coli gastrointestinal tract infection" EXACT [SNOMEDCT_2005_07_31:186132008] synonym: "Enteroinvasive Escherichia coli gastrointestinal tract infection (disorder)" EXACT [SNOMEDCT_2005_07_31:240355008] *************** *** 168926,168929 **** --- 168929,168933 ---- id: DOID:13601 name: enteropathogenic Escherichia coli infectious disease + def: "An Escherichia coli intestinal infectious disease that involves infection of the intestine caused by a serological subgroup of Escherichia coli called enteropathogenic Escherichia coli (EPEC), which has a plasmid-encoded protein referred to as EPEC adherence factor that enables localized adherence of bacteria to intestinal cells and a non fimbrial adhesin designated intimin, which is an outer membrane protein that mediates the final stages of adherence. EPEC induce a profuse watery (sometimes bloody) diarrhea." [url:http\://www.textbookofbacteriology.net/e.coli_4.html] synonym: "Enteropathogenic Escherichia coli gastrointestinal tract infection" EXACT [SNOMEDCT_2005_07_31:186130000] synonym: "Enteropathogenic Escherichia coli gastrointestinal tract infection (disorder)" EXACT [SNOMEDCT_2005_07_31:240353001] *************** *** 200188,200191 **** --- 200192,200196 ---- id: DOID:14433 name: enterohemorrhagic Escherichia coli infectious disease + def: "An Escherichia coli intestinal infectious disease that involves infection of the intestine caused by a serological subgroup of Escherichia coli called enterohemorrhagic Escherichia coli (EHEC), which cause hemorrhagic colitis or bloody diarrhea that can progress to hemolytic uremic syndrome. EHEC are considered to be moderately invasive and are characterized by the production of verotoxin or Shiga toxins. The infection results in copious bloody discharge." [url:http\://www.textbookofbacteriology.net/e.coli_4.html] synonym: "intestinal infection due to enterohemorrhagic E. coli" EXACT [ICD9CM_2006:008.04] synonym: "Verotoxigenic Escherichia coli gastrointestinal tract infection" EXACT [SNOMEDCT_2005_07_31:186133003] *************** *** 200222,200225 **** --- 200227,200231 ---- id: DOID:14434 name: enterotoxigenic Escherichia coli infectious disease + def: "An Escherichia coli intestinal infectious disease that involves infection of the intestine caused by a serological subgroup of Escherichia coli called enterotoxigenic Escherichia coli (ETEC), which are non-invasive and produce heat-labile enterotoxin (LT) or heat stable toxin (ST). The bacteria colonize the GI tract by means of a fimbrial adhesin. The symptoms include diarrhea without fever." [url:http\://www.textbookofbacteriology.net/e.coli_4.html] synonym: "Enterotoxigenic Escherichia coli gastrointestinal tract infection" EXACT [SNOMEDCT_2005_07_31:186131001] synonym: "Enterotoxigenic Escherichia coli gastrointestinal tract infection (disorder)" EXACT [SNOMEDCT_2005_07_31:240352006] *************** *** 309770,309773 **** --- 309776,309780 ---- id: DOID:3742 name: bladder squamous cell carcinoma + def: "A carcinoma of bladder that is manifested in squamous cells of the bladder." [url:http\://www.cancer.gov/cancertopics/types/bladder] synonym: "Epidermoid carcinoma of the urinary bladder" EXACT [NCI2004_11_17:C4031] synonym: "squamous cell carcinoma of bladder (disorder)" EXACT [SNOMEDCT_2005_07_31:255111004] *************** *** 310103,310106 **** --- 310110,310114 ---- id: DOID:3750 name: urethra squamous cell carcinoma + def: "A cancer of urethra that shows squamous cell differentiation." [url:http\://en.wikipedia.org/wiki/Squamous_cell_carcinoma] synonym: "urethral Epidermoid carcinoma" EXACT [NCI2004_11_17:C6165] xref: NCI2004_11_17:C6165 *************** *** 321148,321151 **** --- 321156,321160 ---- id: DOID:4013 name: urethra transitional cell carcinoma + def: "A cancer of urethra that is characterized by cancer cells forming in the renal pelvis and ureter." [url:http\://cancer.emedtv.com/transitional-cell-carcinoma-%28of-the-ureter-and-renal-pelvis%29/transitional-cell-carcinoma-%28of-the-ureter-and-renal-pelvis%29.html] synonym: "urethral transitional cell carcinoma" EXACT [NCI2004_11_17:C6166] xref: NCI2004_11_17:C6166 *************** *** 330747,330751 **** [Term] id: DOID:4287 ! name: Basal cell carcinoma of External ear synonym: "Basal cell carcinoma of the External ear" EXACT [NCI2004_11_17:C6082] xref: NCI2004_11_17:C6082 --- 330756,330760 ---- [Term] id: DOID:4287 ! name: basal cell carcinoma of external ear synonym: "Basal cell carcinoma of the External ear" EXACT [NCI2004_11_17:C6082] xref: NCI2004_11_17:C6082 *************** *** 367323,367327 **** [Term] id: DOID:5538 ! name: squamous cell carcinoma of External ear synonym: "Epidermoid carcinoma of the External ear" EXACT [NCI2004_11_17:C6083] xref: NCI2004_11_17:C6083 --- 367332,367336 ---- [Term] id: DOID:5538 ! name: squamous cell carcinoma of external ear synonym: "Epidermoid carcinoma of the External ear" EXACT [NCI2004_11_17:C6083] xref: NCI2004_11_17:C6083 *************** *** 377785,377788 **** --- 377794,377798 ---- id: DOID:5962 name: recurrent bladder cancer + def: "A carcinoma of bladder that is described as bladder cancer recurs in a patient who was thought to be cancer-free (in remission) after treatment." [url:http\://www.cancer.org/docroot/CRI/content/CRI_2_4_1x_What_is_Recurrent_Cancer.asp, url:http\://www.webmd.com/cancer/bladder-cancer/tc/bladder-cancer-treatment-health-professional-information-nci-pdq-recurrent-bladder-cancer] synonym: "relapsed cancer of the urinary bladder" EXACT [NCI2004_11_17:C7899] xref: GeneRIF:12809883 *************** *** 409086,409089 **** --- 409096,409100 ---- id: DOID:7371 name: superficial urinary bladder cancer + def: "A carcinoma of bladder that originates in the epithelial cells (the internal lining) of the bladder wall and is limited to this area." [url:http\://www.malecare.com/new_page_91.htm] synonym: "Superficial urinary bladder carcinoma" EXACT [NCI2004_11_17:C27474] xref: NCI2004_11_17:C27474 *************** *** 426563,426566 **** --- 426574,426578 ---- id: DOID:8055 name: recurrent urethral cancer + def: "A cancer of urethra that has recurred after it has been treated. The cancer may come back in the urethra or in other parts of the body." [url:http\://www.cancer.gov/cancertopics/pdq/treatment/urethral/Patient/page3] synonym: "relapsed urethra carcinoma" EXACT [NCI2004_11_17:C7508] xref: NCI2004_11_17:C7508 *************** *** 445579,445582 **** --- 445591,445595 ---- name: carcinoma in situ of digestive organ alt_id: DOID:9018 + def: "A carcinoma in situ that is characterized by the spread of cancer in the digestive organ and the lack of invasion of surrounding tissues." [url:http\://en.wikipedia.org/wiki/Carcinoma_in_situ] synonym: "carcinoma in situ of digestive organ" EXACT [MTH:U000743] synonym: "carcinoma in situ of digestive organ (disorder)" EXACT [SNOMEDCT_2005_07_31:109850001] *************** *** 446085,446088 **** --- 446098,446102 ---- name: carcinoma in situ of skin alt_id: DOID:9000 + def: "A carcinoma in situ that is characterized by the spread of cancer in skin and the lack of invasion of surrounding tissues." [url:http\://en.wikipedia.org/wiki/Carcinoma_in_situ] synonym: "carcinoma in situ of other specified sites of skin" EXACT [] synonym: "carcinoma in situ of other specified sites of skin (disorder)" EXACT [SNOMEDCT_2005_07_31:189333008] *************** *** 446763,446766 **** --- 446777,446781 ---- id: DOID:8718 name: carcinoma in situ of respiratory system + def: "A carcinoma in situ that is characterized by the spread of cancer in the respiratory system and the lack of invasion of surrounding tissues." [url:http\://en.wikipedia.org/wiki/Carcinoma_in_situ] synonym: "carcinoma in situ of respiratory system" EXACT [ICD9CM_2006:231] synonym: "carcinoma in situ of respiratory system (disorder)" EXACT [SNOMEDCT_2005_07_31:189251006] *************** *** 448439,448442 **** --- 448454,448458 ---- id: DOID:8792 name: carcinoma in situ of eye + def: "A carcinoma in situ that is characterized by the spread of cancer in the eye and the lack of invasion of surrounding tissues." [url:http\://en.wikipedia.org/wiki/Carcinoma_in_situ] synonym: "carcinoma in situ of eye (disorder)" EXACT [SNOMEDCT_2005_07_31:92590009] xref: ICD9CM_2006:234.0 |