[Obo-discuss] Wrong address: Re: add-to-external script improvements

[Alan R. <ala...@gm...>]

Sorry about that - address autocompletion error. This was meant for
the obi developer list.
-Alan

On Tue, Dec 15, 2009 at 9:10 AM, Alan Ruttenberg
<ala...@gm...> wrote:
> The script now recognizes more prefixes, should be more easily
> modified to add new ones (see the $externals_table in the script), and
> provides more help.
> Here's what's printed if there are no arguments given, or if there is
> detectable error in the ids given.
>
>  Usage:
> perl add-to-external.pl child parent [path to external.owl]
> e.g. perl add-to-external.pl PRO:000000001 CHEBI:23091
> The script recognizes the following prefixes:
>  PATO (e.g. PATO:0001879) Ontology: http://purl.org/obo/owl/PATO
>  PRO (e.g. PRO:000001958) Ontology: http://purl.org/obo/owl/PRO
>  FMA (e.g. FMA:7203) Ontology: http://purl.org/obo/owl/FMA
>  CHEBI (e.g. CHEBI:16714) Ontology: http://purl.org/obo/owl/CHEBI
>  GO (e.g. GO:0047036) Ontology: http://purl.org/obo/owl/GO
>  CL (e.g. CL:0000042) Ontology: http://purl.org/obo/owl/CL
>  NCBITaxon (e.g. NCBITaxon:2157) Ontology: http://purl.org/obo/owl/NCBITaxon
>  ENVO (e.g. ENVO:00000430) Ontology: http://purl.org/obo/owl/ENVO
>  SO (e.g. SO:0000683) Ontology: http://purl.org/obo/owl/SO
>  VO (e.g. VO:0000867) Ontology: http://purl.obolibrary.org/obo/vo.owl
>  snap (e.g. snap:MaterialEntity) Ontology: http://www.ifomis.org/bfo/1.1
>  span (e.g. span:Process) Ontology: http://www.ifomis.org/bfo/1.1
>  NIF-GrossAnatomy (e.g. NIF-GrossAnatomy:birnlex_1373) Ontology:
> http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-GrossAnatomy.owl
> Additionally, OBI ids in the form OBI_0600065 or OBI:0600065 can be
> used for parent terms
>