From: Chris M. <cj...@yu...> - 2009-11-14 01:51:57
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Starting obodiff at /users/cjm/cvs/geneontology/oboedit/launch_scripts using 1024M of memory [INFO] Reading [obo-all/plant_trait/plant_trait.obo.CURRENT] (allowDangling = true) (followImports = true) [INFO] Reading [obo-all/plant_trait/plant_trait.obo] (allowDangling = true) (followImports = true) * Created object of type obo:TERM with id TO:0011001 * Created object of type obo:TERM with id TO:0011002 * Created object of type obo:TERM with id TO:0011003 * Created object of type obo:TERM with id TO:0011004 * Created object of type obo:TERM with id TO:0011005 * Created object of type obo:TERM with id TO:0011006 * Created object of type obo:TERM with id TO:0011007 * Created object of type obo:TERM with id TO:0011008 * Created object of type obo:TERM with id TO:0011009 * Created object of type obo:TERM with id TO:0011010 * [Changed name of TO:0011001 from "null" to "leaf lamina color distribution", Set definition of TO:0011001 to "Describes the the way different colors, their hue and shades are distributed on a leaf lamina and its parts such as leaf margin, leaf tip, leaf veins.", Added definition dbxref GR:pj to TO:0011001, Added synonym "LFLCLDIST" to TO:0011001, Created link TO:0011001 -OBO_REL:is_a-> TO:0000299, Assigned namespace "plant_trait_ontology" to TO:0011001] * Changed name of TO:0011001 from "null" to "leaf lamina color distribution" * Set definition of TO:0011001 to "Describes the the way different colors, their hue and shades are distributed on a leaf lamina and its parts such as leaf margin, leaf tip, leaf veins." * Added definition dbxref GR:pj to TO:0011001 * Added synonym "LFLCLDIST" to TO:0011001 * Created link TO:0011001 -OBO_REL:is_a-> TO:0000299 * Assigned namespace "plant_trait_ontology" to TO:0011001 * [Changed name of TO:0011002 from "null" to "inflorescence primary branch attitude", Added comment "Associated to the trait inflorescence type (TO:0000267).", Set definition of TO:0011002 to "The attitude of the inflorescence primary branch in terms of upright and drooping characters.", Added definition dbxref GR:pj to TO:0011002, Added synonym "INFLPBRAATT" to TO:0011002, Created link TO:0011002 -OBO_REL:is_a-> TO:0000373, Assigned namespace "plant_trait_ontology" to TO:0011002] * Changed name of TO:0011002 from "null" to "inflorescence primary branch attitude" * Added comment "Associated to the trait inflorescence type (TO:0000267)." * Set definition of TO:0011002 to "The attitude of the inflorescence primary branch in terms of upright and drooping characters." * Added definition dbxref GR:pj to TO:0011002 * Added synonym "INFLPBRAATT" to TO:0011002 * Created link TO:0011002 -OBO_REL:is_a-> TO:0000373 * Assigned namespace "plant_trait_ontology" to TO:0011002 * [Changed name of TO:0011003 from "null" to "inflorescence axis color", Set definition of TO:0011003 to "Color of the inflorescence axis.", Added definition dbxref GR:pj to TO:0011003, Added synonym "INFLAXISCL" to TO:0011003, Created link TO:0011003 -part_of-> TO:0000581, Assigned namespace "plant_trait_ontology" to TO:0011003] * Changed name of TO:0011003 from "null" to "inflorescence axis color" * Set definition of TO:0011003 to "Color of the inflorescence axis." * Added definition dbxref GR:pj to TO:0011003 * Added synonym "INFLAXISCL" to TO:0011003 * Created link TO:0011003 -part_of-> TO:0000581 * Assigned namespace "plant_trait_ontology" to TO:0011003 * [Changed name of TO:0011004 from "null" to "inflorescence branch color", Set definition of TO:0011004 to "Color of the inflorescence branch.", Added definition dbxref GR:pj to TO:0011004, Added synonym "INFLBRACL" to TO:0011004, Added synonym "panicle branch color" to TO:0011004, Created link TO:0011004 -part_of-> TO:0000581, Assigned namespace "plant_trait_ontology" to TO:0011004] * Changed name of TO:0011004 from "null" to "inflorescence branch color" * Set definition of TO:0011004 to "Color of the inflorescence branch." * Added definition dbxref GR:pj to TO:0011004 * Added synonym "INFLBRACL" to TO:0011004 * Added synonym "panicle branch color" to TO:0011004 * Created link TO:0011004 -part_of-> TO:0000581 * Assigned namespace "plant_trait_ontology" to TO:0011004 * [Changed name of TO:0011005 from "null" to "penultimate leaf length", Added comment "In case of cereal crop plants such as rice, corn, wheat etc., first leaf below the inflorescence or the last leaf on the shoot is called the flag leaf. Penultimate leaf is the one below flag leaf.", Set definition of TO:0011005 to "Length of the leaf penultimate to the first leaf below the inflorescence. ", Added definition dbxref GR:pj to TO:0011005, Added synonym "PENLFLG" to TO:0011005, Added synonym "second leaf length" to TO:0011005, Created link TO:0011005 -OBO_REL:is_a-> TO:0000135, Assigned namespace "plant_trait_ontology" to TO:0011005] * Changed name of TO:0011005 from "null" to "penultimate leaf length" * Added comment "In case of cereal crop plants such as rice, corn, wheat etc., first leaf below the inflorescence or the last leaf on the shoot is called the flag leaf. Penultimate leaf is the one below flag leaf." * Set definition of TO:0011005 to "Length of the leaf penultimate to the first leaf below the inflorescence. " * Added definition dbxref GR:pj to TO:0011005 * Added synonym "PENLFLG" to TO:0011005 * Added synonym "second leaf length" to TO:0011005 * Created link TO:0011005 -OBO_REL:is_a-> TO:0000135 * Assigned namespace "plant_trait_ontology" to TO:0011005 * [Changed name of TO:0011006 from "null" to "penultimate leaf lamina width", Added comment "In case of cereal crop plants such as rice, corn, wheat etc., first leaf below the inflorescence or the last leaf on the shoot is called the flag leaf. Penultimate leaf is the one below flag leaf.", Set definition of TO:0011006 to "lamina width of the leaf penultimate to the first leaf below the inflorescence. ", Added definition dbxref GR:pj to TO:0011006, Added synonym "PENLFLWD" to TO:0011006, Added synonym "second leaf width" to TO:0011006, Created link TO:0011006 -OBO_REL:is_a-> TO:0002720, Assigned namespace "plant_trait_ontology" to TO:0011006] * Changed name of TO:0011006 from "null" to "penultimate leaf lamina width" * Added comment "In case of cereal crop plants such as rice, corn, wheat etc., first leaf below the inflorescence or the last leaf on the shoot is called the flag leaf. Penultimate leaf is the one below flag leaf." * Set definition of TO:0011006 to "lamina width of the leaf penultimate to the first leaf below the inflorescence. " * Added definition dbxref GR:pj to TO:0011006 * Added synonym "PENLFLWD" to TO:0011006 * Added synonym "second leaf width" to TO:0011006 * Created link TO:0011006 -OBO_REL:is_a-> TO:0002720 * Assigned namespace "plant_trait_ontology" to TO:0011006 * [Changed name of TO:0011007 from "null" to "awn width", Set definition of TO:0011007 to "Width of the awn.", Added definition dbxref GR:pj to TO:0011007, Added synonym "AWNWD" to TO:0011007, Created link TO:0011007 -OBO_REL:is_a-> TO:0002718, Assigned namespace "plant_trait_ontology" to TO:0011007] * Changed name of TO:0011007 from "null" to "awn width" * Set definition of TO:0011007 to "Width of the awn." * Added definition dbxref GR:pj to TO:0011007 * Added synonym "AWNWD" to TO:0011007 * Created link TO:0011007 -OBO_REL:is_a-> TO:0002718 * Assigned namespace "plant_trait_ontology" to TO:0011007 * [Changed name of TO:0011008 from "null" to "stigma length", Set definition of TO:0011008 to "Length of the stigma in a pistil.", Added definition dbxref GR:pj to TO:0011008, Added synonym "STIGLG" to TO:0011008, Created link TO:0011008 -OBO_REL:is_a-> TO:0002600, Assigned namespace "plant_trait_ontology" to TO:0011008] * Changed name of TO:0011008 from "null" to "stigma length" * Set definition of TO:0011008 to "Length of the stigma in a pistil." * Added definition dbxref GR:pj to TO:0011008 * Added synonym "STIGLG" to TO:0011008 * Created link TO:0011008 -OBO_REL:is_a-> TO:0002600 * Assigned namespace "plant_trait_ontology" to TO:0011008 * [Changed name of TO:0011009 from "null" to "style length", Set definition of TO:0011009 to "length of the style in a pistil.", Added definition dbxref GR:pj to TO:0011009, Added synonym "STYLLG" to TO:0011009, Created link TO:0011009 -OBO_REL:is_a-> TO:0002600, Assigned namespace "plant_trait_ontology" to TO:0011009] * Changed name of TO:0011009 from "null" to "style length" * Set definition of TO:0011009 to "length of the style in a pistil." * Added definition dbxref GR:pj to TO:0011009 * Added synonym "STYLLG" to TO:0011009 * Created link TO:0011009 -OBO_REL:is_a-> TO:0002600 * Assigned namespace "plant_trait_ontology" to TO:0011009 * [Changed name of TO:0011010 from "null" to "internode color in proxomity to colored node", Set definition of TO:0011010 to "Color of the spatial section of the internode that is found proximal (next) to the colored node of a stem.", Added definition dbxref GR:pj to TO:0011010, Added synonym "INCLPROXNDCL" to TO:0011010, Created link TO:0011010 -OBO_REL:is_a-> TO:0000426, Assigned namespace "plant_trait_ontology" to TO:0011010] * Changed name of TO:0011010 from "null" to "internode color in proxomity to colored node" * Set definition of TO:0011010 to "Color of the spatial section of the internode that is found proximal (next) to the colored node of a stem." * Added definition dbxref GR:pj to TO:0011010 * Added synonym "INCLPROXNDCL" to TO:0011010 * Created link TO:0011010 -OBO_REL:is_a-> TO:0000426 * Assigned namespace "plant_trait_ontology" to TO:0011010 |