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[Obo-phenotype-commits] obo/ontology/phenotype mammalian_phenotype.obo, 1.257, 1.258 mosquito_insecticide_resistance.obo, 1.459, 1.460
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From: Seth C. <sjc...@us...> - 2009-05-24 07:02:59
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Update of /cvsroot/obo/obo/ontology/phenotype In directory 23jxhf1.ch3.sourceforge.com:/tmp/cvs-serv8154/phenotype Modified Files: mammalian_phenotype.obo mosquito_insecticide_resistance.obo Log Message: Automated file update Index: mammalian_phenotype.obo =================================================================== RCS file: /cvsroot/obo/obo/ontology/phenotype/mammalian_phenotype.obo,v retrieving revision 1.257 retrieving revision 1.258 diff -C2 -d -r1.257 -r1.258 *** mammalian_phenotype.obo 23 May 2009 07:02:51 -0000 1.257 --- mammalian_phenotype.obo 24 May 2009 07:02:45 -0000 1.258 *************** *** 1,4 **** format-version: 1.2 ! date: 21:05:2009 15:33 saved-by: csmith auto-generated-by: OBO-Edit 1.101 --- 1,4 ---- format-version: 1.2 ! date: 22:05:2009 16:31 saved-by: csmith auto-generated-by: OBO-Edit 1.101 *************** *** 2259,2266 **** [Term] id: MP:0000394 ! name: absent melanin granules in hair follicle def: "missing pigment polymers in the hair follicles" [PMID:7958926] synonym: "absence of melanin granules in hair follicle" EXACT [] ! is_a: MP:0005072 ! abnormal hair follicle melanin granule [Term] --- 2259,2267 ---- [Term] id: MP:0000394 ! name: absent hair follicle melanin granules def: "missing pigment polymers in the hair follicles" [PMID:7958926] synonym: "absence of melanin granules in hair follicle" EXACT [] ! synonym: "absent melanin granules in hair follicle" EXACT [] ! is_a: MP:0005072 ! abnormal hair follicle melanin granule morphology [Term] *************** *** 3293,3297 **** --- 3294,3303 ---- name: abnormal urinary bladder morphology def: "any structural anomaly of the inflatable musculomembranous bag for holding urine" [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] + synonym: "abnormal cystis urinaria morphology" EXACT [] synonym: "abnormal urinary bladder" EXACT [] + synonym: "abnormal urocyst morphology" EXACT [] + synonym: "abnormal urocystis morphology" EXACT [] + synonym: "abnormal vesica morphology" EXACT [] + synonym: "abnormal vesica urinaria morphology" EXACT [] synonym: "urinary bladder dysplasia" EXACT [] is_a: MP:0000516 ! abnormal urinary system morphology *************** *** 7810,7815 **** [Term] id: MP:0001239 ! name: abnormal granular layer morphology ! def: "structural or developmental anomaly of the layer of flattened cells containing basophilic granules of keratohyalin and lying just above the stratum spinosum (spiny layer) of the epidermis" [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] synonym: "abnormal stratum granulosum" EXACT [] is_a: MP:0001216 ! abnormal epidermal layer morphology --- 7816,7823 ---- [Term] id: MP:0001239 ! name: abnormal epidermis stratum granulosum morphology ! def: "any structural anomaly of the layer of flattened cells containing basophilic granules of keratohyalin and lying just above the stratum spinosum (spiny layer) of the epidermis" [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] ! synonym: "abnormal epidermal granular layer morphology" EXACT [] ! synonym: "abnormal granular layer morphology" EXACT [] synonym: "abnormal stratum granulosum" EXACT [] is_a: MP:0001216 ! abnormal epidermal layer morphology *************** *** 7904,7923 **** [Term] - id: MP:0001250 - name: abnormal superficial dermis morphology - def: "any structural anomaly of the more superficial, thin layer of the dermis that interdigitates with the epidermis" [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] - synonym: "abnormal corpus papillary" EXACT [] - synonym: "abnormal papillary layer" EXACT [] - synonym: "abnormal stratum papillare" EXACT [] - synonym: "abnormal stratum papillare corii" EXACT [] - synonym: "abnormal superficial dermis" EXACT [] - is_a: MP:0001243 ! abnormal dermal layer morphology - - [Term] id: MP:0001251 ! name: superficial dermis hypercellularity def: "increased cell density of the superficial layer" [PMID:10469309] synonym: "hypercellularity of superficial dermis" EXACT [] ! is_a: MP:0001250 ! abnormal superficial dermis morphology [Term] --- 7912,7921 ---- [Term] id: MP:0001251 ! name: dermis papillary layer hypercellularity def: "increased cell density of the superficial layer" [PMID:10469309] synonym: "hypercellularity of superficial dermis" EXACT [] ! synonym: "superficial dermis hypercellularity" RELATED [] ! is_a: MP:0009545 ! abnormal dermis papillary layer [Term] *************** *** 9059,9063 **** name: aphagia alt_id: MP:0001434 ! def: "failure to eat " [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", J:30404] is_a: MP:0005449 ! abnormal food intake --- 9057,9061 ---- name: aphagia alt_id: MP:0001434 ! def: "failure to eat" [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", J:30404] is_a: MP:0005449 ! abnormal food intake *************** *** 11334,11337 **** --- 11332,11336 ---- synonym: "lymphatic system abnormalities" EXACT [] is_a: MP:0000685 ! abnormal immune system morphology + is_a: MP:0002127 ! abnormal cardiovascular system morphology [Term] *************** *** 14718,14722 **** def: "any structural anomaly of the epithelial cells lining the capsule and trabeculae of the thymus" [ISBN:0-8153-1691-7 "Immunobiology, The Immune System in Health and Disease", MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] synonym: "abnormal subcapsular epithelium of the thymus" EXACT [] ! is_a: MP:0002368 ! abnormal thymus capsule morphology [Term] --- 14717,14721 ---- def: "any structural anomaly of the epithelial cells lining the capsule and trabeculae of the thymus" [ISBN:0-8153-1691-7 "Immunobiology, The Immune System in Health and Disease", MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] synonym: "abnormal subcapsular epithelium of the thymus" EXACT [] ! is_a: MP:0009544 ! abnormal thymus epithelium morphology [Term] *************** *** 23277,23281 **** id: MP:0003617 name: urinary bladder hypoplasia ! def: "underdevelopment or reduced size of the urinary bladder, usually due to a reduced number of cells," [NCBI:matt "Matthew Mailman"] is_a: MP:0000538 ! abnormal urinary bladder morphology --- 23276,23285 ---- id: MP:0003617 name: urinary bladder hypoplasia ! def: "underdevelopment or reduced size of the urinary bladder, usually due to a reduced number of cells" [NCBI:matt "Matthew Mailman"] ! synonym: "cystis urinaria hypoplasia" EXACT [] ! synonym: "urocyst hypoplasia" EXACT [] ! synonym: "urocystis hypoplasia" EXACT [] ! synonym: "vesica hypoplasia" EXACT [] ! synonym: "vesica urinaria hypoplasia" EXACT [] is_a: MP:0000538 ! abnormal urinary bladder morphology *************** *** 33537,33548 **** [Term] id: MP:0005071 ! name: enlarged melanin granules in hair follicle def: "increased size of the pigment particles in the hair follicle" [J:5078] ! is_a: MP:0005072 ! abnormal hair follicle melanin granule [Term] id: MP:0005072 ! name: abnormal hair follicle melanin granule ! def: "anomalous pigment particles in the hair follicles" [MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] synonym: "hair follicle melanin granule abnormalities" EXACT [] is_a: MP:0000377 ! abnormal hair follicle morphology --- 33541,33552 ---- [Term] id: MP:0005071 ! name: enlarged hair follicle melanin granules def: "increased size of the pigment particles in the hair follicle" [J:5078] ! is_a: MP:0005072 ! abnormal hair follicle melanin granule morphology [Term] id: MP:0005072 ! name: abnormal hair follicle melanin granule morphology ! def: "any structural anomaly of the pigment particles in the hair follicles" [MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] synonym: "hair follicle melanin granule abnormalities" EXACT [] is_a: MP:0000377 ! abnormal hair follicle morphology *************** *** 33607,33616 **** [Term] id: MP:0005081 ! name: abnormal stratum reticulare morphology ! def: "structural anomaly of the thicker, deeper layer of the dermis, containing blood and lymph vessels, nerves and nerve endings, and hair follicles" [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] synonym: "abnormal reticular layer morphology" EXACT [] - synonym: "abnormal stratum reticulare" EXACT [] synonym: "abnormal stratum reticulare corii" EXACT [] synonym: "abnormal stratum reticulare cutis" EXACT [] synonym: "abnormal tunica propria corii" EXACT [] is_a: MP:0001243 ! abnormal dermal layer morphology --- 33611,33620 ---- [Term] id: MP:0005081 ! name: abnormal dermis reticular layer morphology ! def: "any structural anomaly of the thicker, deeper layer of the dermis, containing blood and lymph vessels, nerves and nerve endings, and hair follicles" [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] synonym: "abnormal reticular layer morphology" EXACT [] synonym: "abnormal stratum reticulare corii" EXACT [] synonym: "abnormal stratum reticulare cutis" EXACT [] + synonym: "abnormal stratum reticulare morphology" EXACT [] synonym: "abnormal tunica propria corii" EXACT [] is_a: MP:0001243 ! abnormal dermal layer morphology *************** *** 36434,36437 **** --- 36438,36442 ---- synonym: "abnormal energy intake" EXACT [] synonym: "abnormal food consumption" EXACT [] + synonym: "abnormal ingestion" EXACT [] is_a: MP:0001431 ! abnormal eating behavior *************** *** 39905,39909 **** id: MP:0006269 name: abnormal mammary gland growth during pregnancy ! def: "anomaly in the extensive and rapid branching of the mammary ducts, expansion of mammary epithelium in the stroma between the ducts with or without abnormalities in nipple maturation " [MGI:llw2 "Linda Washburn, Mouse Genome Informatics Curator"] is_a: MP:0000628 ! abnormal mammary gland development --- 39910,39914 ---- id: MP:0006269 name: abnormal mammary gland growth during pregnancy ! def: "anomaly in the extensive and rapid branching of the mammary ducts, expansion of mammary epithelium in the stroma between the ducts with or without abnormalities in nipple maturation in preparation for lactation" [MGI:llw2 "Linda Washburn, Mouse Genome Informatics Curator"] is_a: MP:0000628 ! abnormal mammary gland development *************** *** 47969,47972 **** --- 47974,47978 ---- is_a: MP:0002075 ! abnormal coat/hair pigmentation is_a: MP:0003809 ! abnormal hair shaft morphology + is_a: MP:0005075 ! abnormal melanosome morphology [Term] *************** *** 53646,53650 **** id: MP:0009447 name: abnormal platelet ATP level ! def: "abberant concentration of the major energy source adenosine triphosphate produced by dense bodies located in platelets" [MGI:llw2 "Linda Washburn, Mouse Genome Informatics Curator"] is_a: MP:0009446 ! abnormal platelet dense granule physiology --- 53652,53657 ---- id: MP:0009447 name: abnormal platelet ATP level ! def: "aberrant concentration of the major energy source adenosine triphosphate produced by dense bodies located in platelets" [MGI:llw2 "Linda Washburn, Mouse Genome Informatics Curator"] ! synonym: "abnormal platelet adenosine triphosphate level" EXACT [] is_a: MP:0009446 ! abnormal platelet dense granule physiology *************** *** 53653,53656 **** --- 53660,53664 ---- name: decreased platelet ATP level def: "reduced concentration of the major energy source adenosine triphosphate produced by dense bodies located in platelets" [MGI:llw2 "Linda Washburn, Mouse Genome Informatics Curator"] + synonym: "decreased platelet adenosine triphosphate level" EXACT [] synonym: "reduced platelet ATP level" EXACT [] is_a: MP:0009447 ! abnormal platelet ATP level *************** *** 53660,53663 **** --- 53668,53672 ---- name: increased platelet ATP level def: "increased concentration of the major energy source adenosine triphosphate produced by dense bodies located in platelets" [MGI:llw2 "Linda Washburn, Mouse Genome Informatics Curator"] + synonym: "increased platelet adenosine triphosphate level" EXACT [] is_a: MP:0009447 ! abnormal platelet ATP level *************** *** 53895,53898 **** --- 53904,53908 ---- name: ileum inflammation def: "local accumulation of fluid, plasma proteins, and leukocytes in the ileum" [MGI:anna "Anna V. Anagnostopoulos, Mouse Genome Informatics Curator"] + synonym: "ileitis" EXACT [] is_a: MP:0003306 ! small intestinal inflammation *************** *** 54376,54379 **** --- 54386,54390 ---- synonym: "abnormal Virchow-Hassall body morphology" EXACT [] is_a: MP:0002375 ! abnormal thymus medulla morphology + is_a: MP:0009544 ! abnormal thymus epithelium morphology [Term] *************** *** 54398,54401 **** --- 54409,54532 ---- is_a: MP:0009258 ! abnormal thymocyte apoptosis + [Term] + id: MP:0009543 + name: abnormal thymus corticomedullary boundary morphology + def: "any structural anomaly of the dense region demarcating the thymus medulla from the surrounding cortex that is characterized by numerous\nblood vessels (predominantly arterioles) with some perivascular connective tissue, mature and immature T lymphocytes, dendritic cells, variable numbers of perivascular B-lymphocytes and plasma cells; site of entry of bone marrow stem cells and exit of mature,\nfunctional T cells" [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator", PMID:17067941] + synonym: "abnormal thymic corticomedullary boundary morphology" EXACT [] + synonym: "abnormal thymus CMZ morphology" EXACT [] + synonym: "abnormal thymus cortico-medullary boundary" EXACT [] + synonym: "abnormal thymus cortico-medullary junction" EXACT [] + synonym: "abnormal thymus cortico-medullary zone" EXACT [] + synonym: "abnormal thymus corticomedullary zone morphology" EXACT [] + is_a: MP:0002367 ! abnormal thymus lobule morphology + + [Term] + id: MP:0009544 + name: abnormal thymus epithelium morphology + def: "any structural anomaly of the supporting framework of the thymus" [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator", PMID:17067941] + is_a: MP:0000703 ! abnormal thymus morphology + + [Term] + id: MP:0009545 + name: abnormal dermis papillary layer + alt_id: MP:0001250 + def: "any structural anomaly of the more superficial, thin layer of the dermis that interdigitates with the epidermis" [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] + synonym: "abnormal corpus papillary" EXACT [] + synonym: "abnormal papillary layer" EXACT [] + synonym: "abnormal stratum papillare" EXACT [] + synonym: "abnormal stratum papillare corii" EXACT [] + synonym: "abnormal superficial dermis morphology" EXACT [] + is_a: MP:0001243 ! abnormal dermal layer morphology + + [Term] + id: MP:0009546 + name: absent gastric milk in neonates + def: "failure of nursing offspring to ingest milk as indicated by stomach content" [MGI:llw2 "Linda Washburn, Mouse Genome Informatics Curator"] + synonym: "absent milk spots" EXACT [] + is_a: MP:0005449 ! abnormal food intake + + [Term] + id: MP:0009547 + name: elliptocytosis + def: "hematologic disorder in which an abnormally large number of erythrocytes are elliptical rather than the typical biconcave, disc shape" [MGI:llw2 "Linda Washburn, Mouse Genome Informatics Curator"] + is_a: MP:0002447 ! abnormal erythrocyte morphology + + [Term] + id: MP:0009548 + name: abnormal platelet aggregation + def: "any functional anomaly in the adhesion of one platelet to one or more other platelets via adhesion molecules" [GO:0070527] + synonym: "abnormal blood platelet aggregation" EXACT [] + synonym: "abnormal thrombocyte aggregation" EXACT [] + is_a: MP:0006298 ! abnormal platelet activation + + [Term] + id: MP:0009549 + name: impaired platelet aggregation + def: "decrease in the ability of one platelet to one or more other platelets via adhesion molecules" [GO:0070527] + is_a: MP:0009548 ! abnormal platelet aggregation + + [Term] + id: MP:0009550 + name: urinary bladder carcinoma + def: "a malignant neoplasm of the urinary bladder, arising from epithelial cells" [MGI:anna "Anna V. Anagnostopoulos, Mouse Genome Informatics Curator"] + is_a: MP:0002038 ! carcinoma + + [Term] + id: MP:0009551 + name: urinary bladder transitional cell carcinoma + def: "a malignant neoplasm of the transitional epithelial layer of the urinary bladder" [MGI:anna "Anna V. Anagnostopoulos, Mouse Genome Informatics Curator"] + is_a: MP:0009550 ! urinary bladder carcinoma + + [Term] + id: MP:0009552 + name: urinary bladder obstruction + def: "any impediment or blockage of the musculomembranous elastic bag serving as a storage place for urine" [MGI:anna "Anna V. Anagnostopoulos, Mouse Genome Informatics Curator"] + synonym: "cystis urinaria obstruction" EXACT [] + synonym: "urocyst obstruction" EXACT [] + synonym: "urocystis obstruction" EXACT [] + synonym: "vesica obstruction" EXACT [] + synonym: "vesica urinaria obstruction" EXACT [] + is_a: MP:0000538 ! abnormal urinary bladder morphology + + [Term] + id: MP:0009553 + name: fused lips + def: "an anomaly of the fleshy margins of the mouth resulting in the lips being joined together into one structure" [MGI:mberry "Melissa Berry, Genetics Resources Curator"] + is_a: MP:0003769 ! abnormal lip morphology + + [Term] + id: MP:0009554 + name: abnormal hair follicle melanin granule shape + def: "the form of pigment polymers in the hair follicle differs compared to controls" [MGI:llw2 "Linda Washburn, Mouse Genome Informatics Curator"] + is_a: MP:0005072 ! abnormal hair follicle melanin granule morphology + + [Term] + id: MP:0009555 + name: abnormal hair follicle melanin granule distribution + def: "anomaly in the spatial arrangement of particles produced by melanocytes that confer color in the hair follicle" [MGI:llw2 "Linda Washburn, Mouse Genome Informatics Curator"] + is_a: MP:0005072 ! abnormal hair follicle melanin granule morphology + + [Term] + id: MP:0009556 + name: abnormal platelet ADP level + def: "aberrant concentration of the major energy source adenosine diphosphate produced by dense bodies located in platelets" [MGI:mberry "Melissa Berry, Genetics Resources Curator"] + synonym: "abnormal platelet adenosine diphosphate level" EXACT [] + is_a: MP:0009446 ! abnormal platelet dense granule physiology + + [Term] + id: MP:0009557 + name: decreased platelet ADP level + def: "reduced concentration of the major energy source adenosine diphosphate produced by dense bodies located in platelets" [MGI:mberry "Melissa Berry, Genetics Resources Curator"] + synonym: "decreased platelet adenosine diphosphate level" EXACT [] + synonym: "reduced platelet ADP level" EXACT [] + is_a: MP:0009556 ! abnormal platelet ADP level + + [Term] + id: MP:0009558 + name: increased platelet ADP level + def: "increased concentration of the major energy source adenosine diphosphate produced by dense bodies located in platelets" [MGI:mberry "Melissa Berry, Genetics Resources Curator"] + synonym: "increased platelet adenosine diphosphate level" EXACT [] + is_a: MP:0009556 ! abnormal platelet ADP level + [Typedef] id: part_of |