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[Obo-phenotype-commits] obo/ontology/phenotype mammalian_phenotype.obo, 1.255, 1.256 mosquito_insecticide_resistance.obo, 1.456, 1.457
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From: Seth C. <sjc...@us...> - 2009-05-21 07:02:59
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Update of /cvsroot/obo/obo/ontology/phenotype In directory 23jxhf1.ch3.sourceforge.com:/tmp/cvs-serv4316/phenotype Modified Files: mammalian_phenotype.obo mosquito_insecticide_resistance.obo Log Message: Automated file update Index: mammalian_phenotype.obo =================================================================== RCS file: /cvsroot/obo/obo/ontology/phenotype/mammalian_phenotype.obo,v retrieving revision 1.255 retrieving revision 1.256 diff -C2 -d -r1.255 -r1.256 *** mammalian_phenotype.obo 19 May 2009 07:02:54 -0000 1.255 --- mammalian_phenotype.obo 21 May 2009 07:02:50 -0000 1.256 *************** *** 1,4 **** format-version: 1.2 ! date: 18:05:2009 16:08 saved-by: csmith auto-generated-by: OBO-Edit 1.101 --- 1,4 ---- format-version: 1.2 ! date: 19:05:2009 16:13 saved-by: csmith auto-generated-by: OBO-Edit 1.101 *************** *** 4012,4016 **** name: abnormal sebaceous gland morphology alt_id: MP:0001226 ! def: "any structural anomaly of the holocrine glands of the dermis that secrete sebum into the hair follicles or in hairless areas into ducts" [MGI:tc "Teresa Chu, Mouse Genome Informatics Curator"] synonym: "sebaceous gland dysplasia" EXACT [] is_a: MP:0002163 ! abnormal gland morphology --- 4012,4016 ---- name: abnormal sebaceous gland morphology alt_id: MP:0001226 ! def: "any structural anomaly of the holocrine glands that secrete sebum into the hair follicles or in hairless areas into ducts" [MGI:tc "Teresa Chu, Mouse Genome Informatics Curator"] synonym: "sebaceous gland dysplasia" EXACT [] is_a: MP:0002163 ! abnormal gland morphology *************** *** 14630,14633 **** --- 14630,14634 ---- def: "any structural anomaly of the area of the spleen in which T cells surround the central arteriole" [ISBN:0-397-51047-0 "Rubin E, et al. Pathology, 2nd edition", ISBN:0-8153-1691-7 "Immunobiology, The Immune System in Health and Disease", MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] synonym: "abnormal PALS" EXACT [] + synonym: "abnormal periarteriolar sheath morphology" EXACT [] synonym: "abnormal splenic periarteriolar lymphoid sheath morphology" EXACT [] synonym: "abnormal T cell domain of the splenic white pulp" EXACT [] *************** *** 17339,17343 **** id: MP:0002745 name: abnormal atrioventricular valve morphology ! def: "any structural anomaly of the valves that gate the flow of blood from the atria into the ventricles" [J:82728, MGI:pvb "Pierre Vanden Borre, Mouse Genome Informatics Curator"] synonym: "abnormal atrioventricular valves" EXACT [] is_a: MP:0000285 ! abnormal cardiac valve morphology --- 17340,17344 ---- id: MP:0002745 name: abnormal atrioventricular valve morphology ! def: "any structural anomaly of the valves that gate the flow of blood from the atria into the ventricles" [MGI:pvb "Pierre Vanden Borre, Mouse Genome Informatics Curator"] synonym: "abnormal atrioventricular valves" EXACT [] is_a: MP:0000285 ! abnormal cardiac valve morphology *************** *** 18955,18959 **** id: MP:0002977 name: abnormal patterning of the aortic arch ! def: "abnormal development or differentiation of the tissues that give rise to the portion of the descending aorta proceeding from the arch of the aorta and extending to the diaphragm " [MESH:National Library of Medicine_Medical Subject Headings] is_a: MP:0000259 ! abnormal vascular development is_a: MP:0004113 ! abnormal aortic arch morphology --- 18956,18960 ---- id: MP:0002977 name: abnormal patterning of the aortic arch ! def: "abnormal development or differentiation of the tissues that give rise to the portion of the descending aorta proceeding from the arch of the aorta and extending to the diaphragm" [MESH:National Library of Medicine_Medical Subject Headings] is_a: MP:0000259 ! abnormal vascular development is_a: MP:0004113 ! abnormal aortic arch morphology *************** *** 19057,19061 **** id: MP:0002991 name: abnormal sebaceous gland physiology ! def: "anomalous function of any of the small, sacculated organs found within the dermis that normally secrete sebum" [MESH:A10.336.827] synonym: "al sebaceous gland function" EXACT [] is_a: MP:0002164 ! abnormal gland physiology --- 19058,19062 ---- id: MP:0002991 name: abnormal sebaceous gland physiology ! def: "any functional anomaly of the holocrine glands that secrete sebum into the hair follicles or in hairless areas into ducts" [MESH:A10.336.827] synonym: "al sebaceous gland function" EXACT [] is_a: MP:0002164 ! abnormal gland physiology *************** *** 19722,19726 **** id: MP:0003093 name: abnormal anterior stroma morphology ! def: "structural anomaly of the anterior segment of the lamellated connective tissue layer of the cornea" [MESH:National Library of Medicine_Medical Subject Headings, MGI:anna "Anna V. Anagnostopoulos, Mouse Genome Informatics Curator", PMID:12556382] is_a: MP:0005300 ! abnormal corneal stroma morphology --- 19723,19727 ---- id: MP:0003093 name: abnormal anterior stroma morphology ! def: "structural anomaly of the anterior segment of the lamellated connective tissue layer of the cornea" [MGI:anna "Anna V. Anagnostopoulos, Mouse Genome Informatics Curator", PMID:12556382] is_a: MP:0005300 ! abnormal corneal stroma morphology *************** *** 24572,24576 **** id: MP:0003806 name: abnormal nucleotide metabolism ! def: "impaired regulation of nucleotide levels in either production or breakdown of these structural components of nucleic acids" [MESH:National Library of Medicine_Medical Subject Headings] is_a: MP:0005266 ! abnormal metabolism --- 24573,24577 ---- id: MP:0003806 name: abnormal nucleotide metabolism ! def: "any anomaly in the chemical reactions and pathways involving a nucleotide, including metabolic, catabolic and biosynthetic processes" [GO:0009117] is_a: MP:0005266 ! abnormal metabolism *************** *** 38306,38310 **** id: MP:0006024 name: collapsed Reissner membrane ! def: "the Reissner's membrane, which normally separates the scala media from the scala vestibuli, has collapsed onto the spiral limbus and the tectorial membrane of the organ of Corti" [J:37461, MGI:anna "Anna V. Anagnostopoulos, Mouse Genome Informatics Curator", MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] synonym: "collapsed Reissner's membrane" EXACT [] is_a: MP:0006021 ! abnormal Reissner membrane morphology --- 38307,38311 ---- id: MP:0006024 name: collapsed Reissner membrane ! def: "the Reissner's membrane, which normally separates the scala media from the scala vestibuli, has collapsed onto the spiral limbus and the tectorial membrane of the organ of Corti" [MGI:anna "Anna V. Anagnostopoulos, Mouse Genome Informatics Curator", MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] synonym: "collapsed Reissner's membrane" EXACT [] is_a: MP:0006021 ! abnormal Reissner membrane morphology *************** *** 38674,38678 **** id: MP:0006077 name: inguinal hernia ! def: "hernia through the abdominal wall in the region of the groin known as Hesselbach's triangle" [ISBN:0-8036-0655-99 "Taber's Cyclopedic Medical Dictionary, 19th edition", J:74295, MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] is_a: MP:0000757 ! herniated abdominal wall --- 38675,38679 ---- id: MP:0006077 name: inguinal hernia ! def: "hernia through the abdominal wall in the region of the groin known as Hesselbach's triangle" [ISBN:0-8036-0655-99 "Taber's Cyclopedic Medical Dictionary, 19th edition", MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] is_a: MP:0000757 ! herniated abdominal wall *************** *** 38735,38739 **** id: MP:0006085 name: myocardial necrosis ! def: "pathological cell death of the cardiac muscle cells, usually due to irreversible damage" [J:92722, MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] synonym: "cardiac muscle necrosis" EXACT [] synonym: "cardiomyocyte necrosis" EXACT [] --- 38736,38740 ---- id: MP:0006085 name: myocardial necrosis ! def: "pathological cell death of the cardiac muscle cells, usually due to irreversible damage" [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] synonym: "cardiac muscle necrosis" EXACT [] synonym: "cardiomyocyte necrosis" EXACT [] *************** *** 38787,38791 **** id: MP:0006093 name: arteriovenous malformation ! def: "fusion of an artery and vein without an intervening capillary bed" [J:93125, MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] synonym: "arteriovenous fistula" EXACT [] synonym: "AVM" EXACT [] --- 38788,38792 ---- id: MP:0006093 name: arteriovenous malformation ! def: "fusion of an artery and vein without an intervening capillary bed" [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] synonym: "arteriovenous fistula" EXACT [] synonym: "AVM" EXACT [] *************** *** 39890,39894 **** id: MP:0006267 name: abnormal intercalated disc morphology ! def: "any structural abnormality in the electron dense junctional complex, at the end to end contacts of cardiac muscle cells, that contains two types of membrane junctions i.e. gap junctions and desmosomes" [J:64280, MGI:anna "Anna V. Anagnostopoulos, Mouse Genome Informatics Curator"] is_a: MP:0000278 ! abnormal myocardial fiber morphology --- 39891,39895 ---- id: MP:0006267 name: abnormal intercalated disc morphology ! def: "any structural abnormality in the electron dense junctional complex, at the end to end contacts of cardiac muscle cells, that contains two types of membrane junctions i.e. gap junctions and desmosomes" [MGI:anna "Anna V. Anagnostopoulos, Mouse Genome Informatics Curator"] is_a: MP:0000278 ! abnormal myocardial fiber morphology *************** *** 39958,39962 **** id: MP:0006277 name: abnormal parasympathetic nervous system physiology ! def: "anomaly in the function of the craniosacral portion of the autonomic nervous system" [ISBN:0-8036-0655-99 "Taber's Cyclopedic Medical Dictionary, 19th edition", J:78031, MGI:anna "Anna V. Anagnostopoulos, Mouse Genome Informatics Curator"] is_a: MP:0006276 ! abnormal autonomic nervous system physiology --- 39959,39963 ---- id: MP:0006277 name: abnormal parasympathetic nervous system physiology ! def: "anomaly in the function of the craniosacral portion of the autonomic nervous system" [ISBN:0-8036-0655-99 "Taber's Cyclopedic Medical Dictionary, 19th edition", MGI:anna "Anna V. Anagnostopoulos, Mouse Genome Informatics Curator"] is_a: MP:0006276 ! abnormal autonomic nervous system physiology *************** *** 48739,48742 **** --- 48740,48744 ---- name: abnormal thymus cell ratio def: "deviation from the standard ratios of thymocyte subpopulations compared to control samples" [MGI:mberry "Melissa Berry, Genetics Resources Curator"] + synonym: "abnormal thymic cell ratio" EXACT [] is_a: MP:0002365 ! abnormal thymus cellularity *************** *** 54367,54370 **** --- 54369,54388 ---- is_a: MP:0002882 ! abnormal neuron morphology + [Term] + id: MP:0009539 + name: abnormal Hassall's corpuscle morphology + def: "any strucutral anomaly of the small spherical bodies of epithelial cells found in the medulla of the thymus, that are arranged in a concentric pattern around clusters of degenerating lymphocytes, eosinophils and macrophages" [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] + synonym: "abnormal Hassal body morphology" EXACT [] + synonym: "abnormal Hassall concentric corpuscle morphology" EXACT [] + synonym: "abnormal thymic corpuscle morphology" EXACT [] + synonym: "abnormal Virchow-Hassall body morphology" EXACT [] + is_a: MP:0002375 ! abnormal thymus medulla morphology + + [Term] + id: MP:0009540 + name: absent Hassall's corpuscle + def: "absence of the small spherical bodies of epithelial cells found in the medulla of the thymus, that are arranged in a concentric pattern around clusters of degenerating lymphocytes, eosinophils and macrophages" [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] + is_a: MP:0009539 ! abnormal Hassall's corpuscle morphology + [Typedef] id: part_of |