[Obo-svn-commit] SF.net SVN: obo: [1882] phenote/trunk/src/java/phenote/dataadapter/worm/ WormInteractionAdapter.java

[<azu...@us...>]

Revision: 1882
          http://obo.svn.sourceforge.net/obo/?rev=1882&view=rev
Author:   azurebrd
Date:     2008-06-23 16:02:17 -0700 (Mon, 23 Jun 2008)

Log Message:
-----------
took out torremark and tedremark from code since it's gone from postgres

Modified Paths:
--------------
    phenote/trunk/src/java/phenote/dataadapter/worm/WormInteractionAdapter.java

Modified: phenote/trunk/src/java/phenote/dataadapter/worm/WormInteractionAdapter.java
===================================================================
--- phenote/trunk/src/java/phenote/dataadapter/worm/WormInteractionAdapter.java	2008-06-23 21:26:33 UTC (rev 1881)
+++ phenote/trunk/src/java/phenote/dataadapter/worm/WormInteractionAdapter.java	2008-06-23 23:02:17 UTC (rev 1882)
@@ -59,11 +59,9 @@
         postgres_table = "int_effector"; updateNormalField(c, s, joinkey, postgres_table, postgres_table, blank);
         postgres_table = "int_torvariation"; updateNormalField(c, s, joinkey, postgres_table, postgres_table, blank);
         postgres_table = "int_tortransgene"; updateNormalField(c, s, joinkey, postgres_table, postgres_table, blank);
-        postgres_table = "int_torremark"; updateNormalField(c, s, joinkey, postgres_table, postgres_table, blank);
         postgres_table = "int_effected"; updateNormalField(c, s, joinkey, postgres_table, postgres_table, blank);
         postgres_table = "int_tedvariation"; updateNormalField(c, s, joinkey, postgres_table, postgres_table, blank);
         postgres_table = "int_tedtransgene"; updateNormalField(c, s, joinkey, postgres_table, postgres_table, blank);
-        postgres_table = "int_tedremark"; updateNormalField(c, s, joinkey, postgres_table, postgres_table, blank);
         postgres_table = "int_type"; updateNormalField(c, s, joinkey, postgres_table, postgres_table, blank);
         postgres_table = "int_phenotype"; updateNormalField(c, s, joinkey, postgres_table, postgres_table, blank);
         postgres_table = "int_rnai"; updateNormalField(c, s, joinkey, postgres_table, postgres_table, blank);
@@ -188,16 +186,12 @@
         updateNormalField(c, s, joinkey, postgres_table, tag_name, tag_value);
         postgres_table = "int_tortransgene"; tag_name = "tor Transgene"; tag_value = chr.getValueString(tag_name);
         updateNormalField(c, s, joinkey, postgres_table, tag_name, tag_value);
-        postgres_table = "int_torremark"; tag_name = "tor Remark"; tag_value = chr.getValueString(tag_name);
-        updateNormalField(c, s, joinkey, postgres_table, tag_name, tag_value);
         postgres_table = "int_effected"; tag_name = "Effected"; 
         updateListField(c, s, joinkey, postgres_table, tag_name, chr);
         postgres_table = "int_tedvariation"; tag_name = "ted Variation"; tag_value = chr.getValueString(tag_name);
         updateNormalField(c, s, joinkey, postgres_table, tag_name, tag_value);
         postgres_table = "int_tedtransgene"; tag_name = "ted Transgene"; tag_value = chr.getValueString(tag_name);
         updateNormalField(c, s, joinkey, postgres_table, tag_name, tag_value);
-        postgres_table = "int_tedremark"; tag_name = "ted Remark"; tag_value = chr.getValueString(tag_name);
-        updateNormalField(c, s, joinkey, postgres_table, tag_name, tag_value);
         postgres_table = "int_type"; tag_name = "Interaction Type"; tag_value = chr.getValueString(tag_name);
         updateNormalField(c, s, joinkey, postgres_table, tag_name, tag_value);
         postgres_table = "int_phenotype"; tag_name = "Phenotype"; 
@@ -326,10 +320,6 @@
       postgres_table = "int_tortransgene"; postgres_value = ""; // postgres_value = "No postgres value assigned";
       postgres_value = queryPostgresCharacter(s, postgres_table, postgres_value, joinkey);
       if (postgres_value == "") { } else { c1.setValue("tor Transgene",postgres_value); }					// assign the queried value
-      postgres_table = "int_torremark"; postgres_value = ""; // postgres_value = "No postgres value assigned";
-      postgres_value = queryPostgresCharacter(s, postgres_table, postgres_value, joinkey);
-      if (postgres_value == "") { } else { c1.setValue("tor Remark",postgres_value); }					// assign the queried value
-
       postgres_table = "int_effected"; postgres_value = ""; // postgres_value = "No postgres value assigned";
       postgres_value = queryPostgresCharacter(s, postgres_table, postgres_value, joinkey);
       if (postgres_value == "") { } else { 
@@ -342,10 +332,6 @@
       postgres_table = "int_tedtransgene"; postgres_value = ""; // postgres_value = "No postgres value assigned";
       postgres_value = queryPostgresCharacter(s, postgres_table, postgres_value, joinkey);
       if (postgres_value == "") { } else { c1.setValue("ted Transgene",postgres_value); }					// assign the queried value
-      postgres_table = "int_tedremark"; postgres_value = ""; // postgres_value = "No postgres value assigned";
-      postgres_value = queryPostgresCharacter(s, postgres_table, postgres_value, joinkey);
-      if (postgres_value == "") { } else { c1.setValue("ted Remark",postgres_value); }					// assign the queried value
-
       postgres_table = "int_type"; postgres_value = ""; // postgres_value = "No postgres value assigned";
       postgres_value = queryPostgresCharacter(s, postgres_table, postgres_value, joinkey);
       if (postgres_value == "") { } else { c1.setValue("Type",postgres_value); }					// assign the queried value


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