[Objcryst-foxx] Fox 1.1.1 (bugfix version) & Call for Help
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From: Vincent Favre-N. <vi...@us...> - 2002-01-18 10:17:24
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Hi all, A new version of Fox is available, to fix unstabilities under windows (sorry about that ; the tests ran just before launching the new version did not show that). FOX is a tool for the ab initio structure determination from powder diffraction (neutrons, X-Ray) and single crystal data (eg extracted intensities). The crystal structure can be described as any combination of atoms, molecules or polyhedras, without any assumption about the connectivity of these units. Fox can make multi-pattern global optimizations, and automatically correct special positions. Fox is available from http://objcryst.sourceforge.net and the CCP14 mirrors: http://www.ccp14.ac.uk/ccp/web-mirrors/objcryst/ http://ccp14.semo.edu/ccp/web-mirrors/objcryst/ http://ccp14.sims.nrc.ca/ccp/web-mirrors/objcryst/ *HELP NEEDED* Due to the recent problems with the 1.1 version under windows, I would very much like to have people testing new versions of Fox on a more regular basis during the developement. You do *not* need any programming skills for this. It would really be helpful, since I work only under Linux, and unfortunately windows is much less forgiving towards errors. What would be necessary for this is to install the (free) Borland compilers on a windows machine (win'98 and above), as well as the sources for wxwindows and Fox. You would then recompile regularly Fox, and run examples on it, to see if something has been broken under windows which I did not see under Linux. Do *not* be afraid about that recompiling: you just need to tape "make" in a DOS window and wait one minute for the new version of Fox to be compiled. And the update of Fox sourcefiles is just point mouse & click thanks to nifty cvs tools. I honestly think that after this has been done once, it shouldn't take more than 10 minutes each time you redo a test (and then you can leave Fox working as a test). Please contact me directly (mailto:vi...@us...) if you think you can help. Since I moved to the ESRF it is not my main project anymore so I have less time, especially for quality tests ! You can do this either if : * you believe Fox is a very useful tool and would like to help * would like to encourage free, open-source crystallographic software * want to have a say in future evolutions of the program * want to access/test the latest developements Of course testers under Linux are welcome, too ! #### 1.1.1 - 2002/01/17 BUG FIXES * Under windows, the global optimization lead to a crash after some random time. * Under windows, clicking on some part of a powder pattern graph would make Fox crash #### 1.1 - 2002/01/8 NEW FEATURES * Now it is possible to import Z-matrices to build a molecule structure (eg a Z-matrix file can be generated from a .pdb file using babel, and then imported into Fox) * Added integrated R and RW factors as new cost functions (thus less sensitive to badly defined profiles). Unless you have *very* good profile parameters, I recommend using the integrated Rw as a cost function. * Now it is recommended to choose an "exponential" schedule for the amplitude, from 8 to .125, and a "smart" schedule for the temperature. This should be optimized for *all* experiments, so that users don't have to guess the right choices. * It is no longer necessary to validate all input by hitting the 'return' key (which was *very* annoying) * Ability to zoom on the powder pattern graph, using the left button (double-click to unzoom) * Possibility to reduce the part of the displayed unit cell in 3D view (use the popup menu with right-click) * Significant speed improvement. * The Parallel Tempering algorithm has been tuned to yield a higher success ratio. * Possibility to used single-crystal data (eg extracted intensities) for crystal structure optimization (honest crystallographer's note: if you have high quality extracted intensities, try direct methods first...) * Added interface for 2theta zero/displacement/transparency parameters in a Powder Pattern object * Added an overall temperature factor (Biso) for each crystalline phase in powder diffraction (also available in single crystal). * new examples for organic molecules (potassium tartrate and cimetidine with powder & extracted pseud-single crystal intensities) * The program now forbids to check lattice or profile parameters for a global optimization. -LINUX: * Now using a distribution from source using the wxWindows RPM, which * should make things easier under Linux. -BUG FIX: * under linux, the antibump cost function was not properly restored from an xml file (preventing merging of identical atoms) * Changing the spacegroup (and thus extinction rules) will now will re-generate the list of reflections for powder diffraction. Same if the lattice parameters or the wavelength has changed. * a number of minor bugfixes... -- Vincent Favre-Nicolin ESRF- Grenoble, France http://v.favrenicolin.free.fr ObjCryst & Fox : http://objcryst.sourceforge.net |