NTRs

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#720 NTRs

Milestone: general

Status: closed

Owner: jzheng

Labels: None

Priority: 5

Updated: 2015-01-15

Created: 2014-11-10

Creator: Janos Demeter

Private: No

Hi,

I'd like to ask for 3 new terms in OBI. The requests are described in the attached file. Please let me know if it needs any further clarification.

Thanks,
Janos

1 Attachments

OBI_terms_to_request-SGD.tsv

Discussion

jzheng - 2014-11-12

Thanks for submitting term request.

The tracker will be discussed on Nov 17 OBI developers' call (next Monday). The call will start at 12:00 PM EST.

The call in information can be found on the page:
http://obi-ontology.org/page/Conference_call_connection_details

Welcome you to join the call for the discussion.

Last edit: jzheng 2014-11-12

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jzheng - 2014-11-12

Sorry I put the wrong time in my original post. The OBI call will start at 12:00 PM EST NOT 11:00 AM.

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jzheng - 2014-12-08

assigned_to: jzheng
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jzheng - 2014-12-08

Dear Janos,

Thanks for your submission. Dr. Chris Stoeckert and I will review your submission and may contact you directly by email if we have some questions.

Jie

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Chris Stoeckert - 2015-01-11

Dear Janos,
I've edited your file (attached) to indicate recommended changes (highlighted in yellow). Some general points are:

removed fields that are inherited from the parent class since they are redundant.

removed and replaced main steps with those that distinguish the assay and have existing OBI terms. We propose the creation of a "SAGE ditag library preparation" for this purpose.
Please let us know if these changes are OK with you or if you have any questions/ issues. If OK we will move ahead with adding these and work on your other term requests with the same approach.
Also, can you check the definition source for 'genotyping by SNP array'? The paper referenced by the listed PMID uses a tiling array.
Thanks,
Chris

OBI_terms_to_request-SGD-cs.xls
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Janos Demeter - 2015-01-13

Dear Chris,

Thank you for the corrections. I updated the file and replaced the incorrect pubmed id. All the changes you made look good to us, so please go ahead and create the terms.

Thank you,
Janos

OBI_terms_to_request-SGD-cs.tsv

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jzheng - 2015-01-15

status: open --> closed
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jzheng - 2015-01-15

Terms are added and OBI ids are assigned.

OBI_0002029 serial analysis of gene expression
OBI_0002030 genotyping by tiling array
OBI_0002031 genotyping by SNP array

The terms will be available in next OBI release.

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