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obi-txcomm — Transcriptomics community discussions of terms to propose to OBI.
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From: Trish W. <wh...@pc...> - 2007-07-06 19:17:42
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An updated file containing the mapping of MO terms to either an equivalent term in an OBO Foundry ontology or the relevant ObiBranch if in the scope of OBI has been uploaded to: https://wiki.cbil.upenn.edu/obiwiki/index.php/TranscriptomicsCommunity Cheers, Trish |
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From: Helen P. <par...@eb...> - 2007-06-27 08:18:26
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I think I agree with Chris, these were mage engineered terms. Something more usefully descriptive would be better Helen Chris Stoeckert wrote: > I would think not. Weren't these MAGE specific to indicate which > processing of biosample was the extract? > Chris > > On Jun 25, 2007, at 2:47 PM, Trish Whetzel wrote: > > >> will the terms 'extract' and 'not_extract' be needed in OBI? >> >> trish >> >> ---------------------------------------------------------------------- >> --- >> This SF.net email is sponsored by DB2 Express >> Download DB2 Express C - the FREE version of DB2 express and take >> control of your XML. No limits. Just data. Click to get it now. >> http://sourceforge.net/powerbar/db2/ >> _______________________________________________ >> Obi-txcomm mailing list >> Obi...@li... >> https://lists.sourceforge.net/lists/listinfo/obi-txcomm >> > > > ------------------------------------------------------------------------- > This SF.net email is sponsored by DB2 Express > Download DB2 Express C - the FREE version of DB2 express and take > control of your XML. No limits. Just data. Click to get it now. > http://sourceforge.net/powerbar/db2/ > _______________________________________________ > Obi-txcomm mailing list > Obi...@li... > https://lists.sourceforge.net/lists/listinfo/obi-txcomm > -- Helen Parkinson, PhD Curation Coordinator Microarray Informatics Team, EBI EBI 01223 494672 Skype: helen.parkinson.ebi |
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From: Chris S. <sto...@pc...> - 2007-06-26 16:47:00
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I would think not. Weren't these MAGE specific to indicate which processing of biosample was the extract? Chris On Jun 25, 2007, at 2:47 PM, Trish Whetzel wrote: > will the terms 'extract' and 'not_extract' be needed in OBI? > > trish > > ---------------------------------------------------------------------- > --- > This SF.net email is sponsored by DB2 Express > Download DB2 Express C - the FREE version of DB2 express and take > control of your XML. No limits. Just data. Click to get it now. > http://sourceforge.net/powerbar/db2/ > _______________________________________________ > Obi-txcomm mailing list > Obi...@li... > https://lists.sourceforge.net/lists/listinfo/obi-txcomm |
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From: Trish W. <wh...@pc...> - 2007-06-25 18:47:51
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will the terms 'extract' and 'not_extract' be needed in OBI? trish |
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From: Chris S. <sto...@pc...> - 2007-05-09 18:48:22
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Helen Causton has kindly agreed to take on the role of Function editor. I anticipate that she will communicate from Function branch discussion what they are looking for and together we can decide what terms if any are appropriate. All the branches need input from us. I am acting in my role as Branch Facilitator to make sure that all the branches are moving forward. The Function branch run by Bill Bug has only 3 editors (Bill, Alan, and covering GO Function, Suzi) and Bill asked help in finding someone from the transcriptomics branch. Depending on how the branches are doing, I may ask for more volunteers later. Chris On May 9, 2007, at 2:24 PM, Trish Whetzel wrote: > Sending to the newer obi-txcomm list. > > BTW, why specifically is this branch in need of someone from > Transcriptomics? In the first round of assigning MO terms to > ObiBranches, none have been assigned to the Function branch? Are > there plans to annotate 'Function' in MAGEv2? > > Trish > > > ---------- Forwarded message ---------- > Date: Wed, 9 May 2007 10:32:09 -0400 > From: Chris Stoeckert <sto...@pc...> > To: FuGO - Transcriptomics Community <fugo- > tx...@li...> > Subject: [Fugo-txcomm] editor for OBI Function branch > > Hi, > The OBI branch covering Function is in need of an editor covering the > transcriptomics area. Bill Bug (BIRN, Drexel) is the Branch Leader > for this and has put up extensive notes as to what the Branch covers > (see https://www.cbil.upenn.edu/fugowiki/index.php/FunctionTerms). As > Bill wrote: ".. the Functions to be covered by OBI will be those > specifically related to investigational details such as executing a > protocol, performing an assay, or using an instrument." > > Is someone willing to volunteer? If not, I will probably go to the > MGED Ontology list and see if we can bring someone in from there. I > will certainly help out but am trying to play a broader role as > branch nudge/ facilitator. > > Thanks, > Chris > > Chris Stoeckert, Ph.D. > Research Professor, Dept. of Genetics > 1415 Blockley Hall, Center for Bioinformatics > 423 Guardian Dr., University of Pennsylvania > Philadelphia, PA 19104 > Ph: 215-573-4409 FAX: 215-573-3111 > http://www.cbil.upenn.edu > ---------------------------------------------------------------------- > --- > > > This SF.net email is sponsored by DB2 Express > > > Download DB2 Express C - the FREE version of DB2 express and take > > > control of your XML. No limits. Just data. Click to get it now. > > > http://sourceforge.net/powerbar/db2/ > _______________________________________________ > > > Fugo-txcomm mailing list > > Fug...@li... > > https://lists.sourceforge.net/lists/listinfo/fugo-txcomm > > > ---------------------------------------------------------------------- > --- > This SF.net email is sponsored by DB2 Express > Download DB2 Express C - the FREE version of DB2 express and take > control of your XML. No limits. Just data. Click to get it now. > http://sourceforge.net/powerbar/db2/ > _______________________________________________ > Obi-txcomm mailing list > Obi...@li... > https://lists.sourceforge.net/lists/listinfo/obi-txcomm |
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From: Trish W. <wh...@pc...> - 2007-05-09 18:24:26
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Sending to the newer obi-txcomm list. BTW, why specifically is this branch in need of someone from Transcriptomics? In the first round of assigning MO terms to ObiBranches, none have been assigned to the Function branch? Are there plans to annotate 'Function' in MAGEv2? Trish ---------- Forwarded message ---------- Date: Wed, 9 May 2007 10:32:09 -0400 From: Chris Stoeckert <sto...@pc...> To: FuGO - Transcriptomics Community <fug...@li...> Subject: [Fugo-txcomm] editor for OBI Function branch Hi, The OBI branch covering Function is in need of an editor covering the transcriptomics area. Bill Bug (BIRN, Drexel) is the Branch Leader for this and has put up extensive notes as to what the Branch covers (see https://www.cbil.upenn.edu/fugowiki/index.php/FunctionTerms). As Bill wrote: ".. the Functions to be covered by OBI will be those specifically related to investigational details such as executing a protocol, performing an assay, or using an instrument." Is someone willing to volunteer? If not, I will probably go to the MGED Ontology list and see if we can bring someone in from there. I will certainly help out but am trying to play a broader role as branch nudge/ facilitator. Thanks, Chris Chris Stoeckert, Ph.D. Research Professor, Dept. of Genetics 1415 Blockley Hall, Center for Bioinformatics 423 Guardian Dr., University of Pennsylvania Philadelphia, PA 19104 Ph: 215-573-4409 FAX: 215-573-3111 http://www.cbil.upenn.edu |
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From: Trish W. <wh...@pc...> - 2007-04-05 16:22:03
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If you are available for the call, please email. Trish > In preparation for our call this Thursday, April 5, 12pm edt, the file > placing MO terms into various OBI branches has been posted: > https://www.cbil.upenn.edu/obiwiki/index.php/TranscriptomicsCommunity > > The agenda for the call is to identify which branches unassigned terms should > be submitted to, identify people to serve as a point of contact for terms and > confirm that we agree as a community with the current assignment of terms. > > Trish > |
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From: Trish W. <wh...@pc...> - 2007-04-04 17:38:11
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Hi all, In preparation for our call this Thursday, April 5, 12pm edt, the file placing MO terms into various OBI branches has been posted: https://www.cbil.upenn.edu/obiwiki/index.php/TranscriptomicsCommunity The agenda for the call is to identify which branches unassigned terms should be submitted to, identify people to serve as a point of contact for terms and confirm that we agree as a community with the current assignment of terms. Trish |
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From: Trish W. <wh...@pc...> - 2007-03-28 18:01:11
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Also not clear where to propose terms related to grouping entities, e.g. ArrayGroup. Perhaps this is a kind of object_fiat_part, but if so I don't think that there is an ObiBranch other than 'core' to propose to and no one is handling extensions from the core. Trish > I have gone through about 3/4 of the MO terms WRT to placement in > ObiBranches. There are some groups of terms that I am not sure where to > place, such as terms for InitialTimePoint, Database resources, and terms for > DataType. Do people have some suggestions as to which ObiBranch these terms > should be proposed to? > > Trish > |
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From: Trish W. <wh...@pc...> - 2007-03-28 15:29:56
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I have gone through about 3/4 of the MO terms WRT to placement in ObiBranches. There are some groups of terms that I am not sure where to place, such as terms for InitialTimePoint, Database resources, and terms for DataType. Do people have some suggestions as to which ObiBranch these terms should be proposed to? Trish |
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From: Trish W. <wh...@pc...> - 2007-03-27 22:04:16
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Well, in that case let's plan to have the call next Thursday, April 5 at 11am EDT, 4pm BST. Trish > I would treat the April 1 date as a guideline. ;) > > Cheers, > Chris > > On Mar 27, 2007, at 5:41 PM, Trish Whetzel wrote: > >> Next week would be fine with me. However, how would you like to go about >> handling the rest of the terms that have not yet been proposed in order >> to meet the April 1 deadline? >> >> Trish >> >> >>> I can be but would rather do it next week as I'm a bit overwhelmed this >>> week. >>> Chris >>> >>> On Mar 27, 2007, at 3:18 PM, Trish Whetzel wrote: >>> >>>> Hi all, >>>> >>>> Last week we talked about having a call this Thursday at 12pm EDT, 5pm >>>> BST(?) to review where and what terms have been proposed to OBI and/or >>>> other ontologies. I'll being sending out an updated file later today. >>>> Are >>>> people still available this Thursday to review the file and discuss >>>> our >>>> plan of action? >>>> >>>> Trish >>>> >>>> >>>> ---------------------------------------------------------------------- >>>> --- >>>> Take Surveys. Earn Cash. Influence the Future of IT >>>> Join SourceForge.net's Techsay panel and you'll get the chance to >>>> share >>>> your >>>> opinions on IT & business topics through brief surveys-and earn cash >>>> http://www.techsay.com/default.php? >>>> page=join.php&p=sourceforge&CID=DEVDEV >>>> _______________________________________________ >>>> Obi-txcomm mailing list >>>> Obi...@li... >>>> https://lists.sourceforge.net/lists/listinfo/obi-txcomm >>> >> >> ---------------------------------------------------------------------- >> --- >> Take Surveys. Earn Cash. Influence the Future of IT >> Join SourceForge.net's Techsay panel and you'll get the chance to share >> your >> opinions on IT & business topics through brief surveys-and earn cash >> http://www.techsay.com/default.php? >> page=join.php&p=sourceforge&CID=DEVDEV >> _______________________________________________ >> Obi-txcomm mailing list >> Obi...@li... >> https://lists.sourceforge.net/lists/listinfo/obi-txcomm > |
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From: Chris S. <sto...@pc...> - 2007-03-27 21:47:41
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I would treat the April 1 date as a guideline. ;) Cheers, Chris On Mar 27, 2007, at 5:41 PM, Trish Whetzel wrote: > Next week would be fine with me. However, how would you like to go > about > handling the rest of the terms that have not yet been proposed in > order > to meet the April 1 deadline? > > Trish > > >> I can be but would rather do it next week as I'm a bit overwhelmed >> this >> week. >> Chris >> >> On Mar 27, 2007, at 3:18 PM, Trish Whetzel wrote: >> >>> Hi all, >>> >>> Last week we talked about having a call this Thursday at 12pm >>> EDT, 5pm >>> BST(?) to review where and what terms have been proposed to OBI >>> and/or >>> other ontologies. I'll being sending out an updated file later >>> today. >>> Are >>> people still available this Thursday to review the file and >>> discuss our >>> plan of action? >>> >>> Trish >>> >>> >>> -------------------------------------------------------------------- >>> -- >>> --- >>> Take Surveys. Earn Cash. Influence the Future of IT >>> Join SourceForge.net's Techsay panel and you'll get the chance to >>> share >>> your >>> opinions on IT & business topics through brief surveys-and earn cash >>> http://www.techsay.com/default.php? >>> page=join.php&p=sourceforge&CID=DEVDEV >>> _______________________________________________ >>> Obi-txcomm mailing list >>> Obi...@li... >>> https://lists.sourceforge.net/lists/listinfo/obi-txcomm >> > > ---------------------------------------------------------------------- > --- > Take Surveys. Earn Cash. Influence the Future of IT > Join SourceForge.net's Techsay panel and you'll get the chance to > share your > opinions on IT & business topics through brief surveys-and earn cash > http://www.techsay.com/default.php? > page=join.php&p=sourceforge&CID=DEVDEV > _______________________________________________ > Obi-txcomm mailing list > Obi...@li... > https://lists.sourceforge.net/lists/listinfo/obi-txcomm |
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From: Trish W. <wh...@pc...> - 2007-03-27 21:42:02
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Next week would be fine with me. However, how would you like to go about handling the rest of the terms that have not yet been proposed in order to meet the April 1 deadline? Trish > I can be but would rather do it next week as I'm a bit overwhelmed this > week. > Chris > > On Mar 27, 2007, at 3:18 PM, Trish Whetzel wrote: > >> Hi all, >> >> Last week we talked about having a call this Thursday at 12pm EDT, 5pm >> BST(?) to review where and what terms have been proposed to OBI and/or >> other ontologies. I'll being sending out an updated file later today. >> Are >> people still available this Thursday to review the file and discuss our >> plan of action? >> >> Trish >> >> >> ---------------------------------------------------------------------- >> --- >> Take Surveys. Earn Cash. Influence the Future of IT >> Join SourceForge.net's Techsay panel and you'll get the chance to share >> your >> opinions on IT & business topics through brief surveys-and earn cash >> http://www.techsay.com/default.php? >> page=join.php&p=sourceforge&CID=DEVDEV >> _______________________________________________ >> Obi-txcomm mailing list >> Obi...@li... >> https://lists.sourceforge.net/lists/listinfo/obi-txcomm > |
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From: Chris S. <sto...@pc...> - 2007-03-27 21:28:49
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I can be but would rather do it next week as I'm a bit overwhelmed this week. Chris On Mar 27, 2007, at 3:18 PM, Trish Whetzel wrote: > Hi all, > > Last week we talked about having a call this Thursday at 12pm EDT, 5pm > BST(?) to review where and what terms have been proposed to OBI and/or > other ontologies. I'll being sending out an updated file later > today. Are > people still available this Thursday to review the file and discuss > our > plan of action? > > Trish > > > ---------------------------------------------------------------------- > --- > Take Surveys. Earn Cash. Influence the Future of IT > Join SourceForge.net's Techsay panel and you'll get the chance to > share your > opinions on IT & business topics through brief surveys-and earn cash > http://www.techsay.com/default.php? > page=join.php&p=sourceforge&CID=DEVDEV > _______________________________________________ > Obi-txcomm mailing list > Obi...@li... > https://lists.sourceforge.net/lists/listinfo/obi-txcomm |
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From: Trish W. <wh...@pc...> - 2007-03-27 19:18:33
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Hi all, Last week we talked about having a call this Thursday at 12pm EDT, 5pm BST(?) to review where and what terms have been proposed to OBI and/or other ontologies. I'll being sending out an updated file later today. Are people still available this Thursday to review the file and discuss our plan of action? Trish |
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From: Trish W. <wh...@pc...> - 2007-03-22 15:50:42
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Based on the call today, we will use the mo tab file to track terms being proposed to OBI. Addititional columns will be added to capture: -OBI branch name that the term fits into -the person responsible for the term -the OBI identifer(s) (to be added once the term is accepted by OBI or in the owl file) -a column for notes, e.g. if there are 2 OBI identifiers indicate why the term was split or if the term is not accepted by OBI to indicate why -OBI review status, e.g. assigned, submitted, accepted, not accepted A header row will also be added to the file :-) I will take a first stab at 1) marking up the file as to what terms have been submittted to which branches and who has agreed to take responsibility for those terms and 2) for those terms not yet submitted, assinging a branch for them to be sent to. I'll send out a marked up version of the file by Tuesday. Can we plan for another call to review the branch assignments and identify people to take responsibility for the terms for next Thursday, Mar.29 at 12pm EDT? Trish |
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From: Trish W. <wh...@pc...> - 2007-03-22 15:10:57
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see attached. t |
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From: Helen P. <par...@eb...> - 2007-03-20 17:09:14
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Hi not really, there are some specific terms that will be outside Mo and I was planning on mining these and I'll flag both for OBI and MO, no definitions though, do have context. I like the suggestion that the OBI.MO mapping should be simple, but we will need to repeat to keep track cheers Helen Trish Whetzel wrote: > Hi Helen, > > Are there specific requirements for AE of how the mapping of MO terms to > OBI terms is maintained? I gather that all users of MO will have the same > general need, but wanted to check since you are not able to attend the > call. > > Trish > > >>>> Some items to cover are: >>>> -who is submitting MO terms for each of the OBI branches, are all terms >>>> covered >>>> -how can we maintain the mapping of MO terms to OBI branches >>>> --current proposal: a tab file listing all MO terms, definitions and a >>>> column >>>> for the OBI identifier(s) that the term maps to >>>> --post on obiwiki or magewiki so that everyone has easy access to update >>>> the >>>> file >>>> > > ------------------------------------------------------------------------- > Take Surveys. Earn Cash. Influence the Future of IT > Join SourceForge.net's Techsay panel and you'll get the chance to share your > opinions on IT & business topics through brief surveys-and earn cash > http://www.techsay.com/default.php?page=join.php&p=sourceforge&CID=DEVDEV > _______________________________________________ > Obi-txcomm mailing list > Obi...@li... > https://lists.sourceforge.net/lists/listinfo/obi-txcomm > -- Helen Parkinson, PhD Curation Coordinator Microarray Informatics Team, EBI EBI 01223 494672 Skype: helen.parkinson.ebi |
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From: Trish W. <wh...@pc...> - 2007-03-20 17:04:15
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Hi Helen, Are there specific requirements for AE of how the mapping of MO terms to OBI terms is maintained? I gather that all users of MO will have the same general need, but wanted to check since you are not able to attend the call. Trish >>> Some items to cover are: >>> -who is submitting MO terms for each of the OBI branches, are all terms >>> covered >>> -how can we maintain the mapping of MO terms to OBI branches >>> --current proposal: a tab file listing all MO terms, definitions and a >>> column >>> for the OBI identifier(s) that the term maps to >>> --post on obiwiki or magewiki so that everyone has easy access to update >>> the >>> file |
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From: Trish W. <wh...@pc...> - 2007-03-20 01:38:34
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Great, that makes at least 3 of us. Another item to discuss along with organizing the work, I would propose. is to discuss what information to include as part of the 'abstract' information to include for the editor_reference property for these terms, i.e. the common part before the term is proposed to OBI. I gather that we are not in a rush for this information, but can add it to the queue of things to do. Trish > Have put it on my calendar. > Chris > > On Mar 19, 2007, at 2:47 PM, Trish Whetzel wrote: > >> So far only myself and Liju have responded as being available this >> Thursday. Chris will you be attending? Is there anyone else that has >> or will submit MO terms for OBI? >> >> Trish >> >>> In order to make sure that we cover all MO terms being proposed to OBI, >>> can >>> we have a conference call to organize who and what will be done? Are >>> people >>> available Thursday, Mar 22 at 11am EDT, 3pm GMT (looks like the UK does >>> not >>> switch to BST until after that weekend). >>> >>> Some items to cover are: >>> -who is submitting MO terms for each of the OBI branches, are all terms >>> covered >>> -how can we maintain the mapping of MO terms to OBI branches >>> --current proposal: a tab file listing all MO terms, definitions and a >>> column >>> for the OBI identifier(s) that the term maps to >>> --post on obiwiki or magewiki so that everyone has easy access to update >>> the >>> file >>> >>> Trish >>> >> >> ------------------------------------------------------------------------- >> Take Surveys. Earn Cash. Influence the Future of IT >> Join SourceForge.net's Techsay panel and you'll get the chance to share >> your >> opinions on IT & business topics through brief surveys-and earn cash >> http://www.techsay.com/default.php?page=join.php&p=sourceforge&CID=DEVDEV >> _______________________________________________ >> Obi-txcomm mailing list >> Obi...@li... >> https://lists.sourceforge.net/lists/listinfo/obi-txcomm > |
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From: Chris S. <sto...@pc...> - 2007-03-20 01:16:02
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Have put it on my calendar. Chris On Mar 19, 2007, at 2:47 PM, Trish Whetzel wrote: > So far only myself and Liju have responded as being available this > Thursday. Chris will you be attending? Is there anyone else that has > or will submit MO terms for OBI? > > Trish > >> In order to make sure that we cover all MO terms being proposed to >> OBI, can >> we have a conference call to organize who and what will be done? >> Are people >> available Thursday, Mar 22 at 11am EDT, 3pm GMT (looks like the UK >> does not >> switch to BST until after that weekend). >> >> Some items to cover are: >> -who is submitting MO terms for each of the OBI branches, are all >> terms >> covered >> -how can we maintain the mapping of MO terms to OBI branches >> --current proposal: a tab file listing all MO terms, definitions >> and a column >> for the OBI identifier(s) that the term maps to >> --post on obiwiki or magewiki so that everyone has easy access to >> update the >> file >> >> Trish >> > > ---------------------------------------------------------------------- > --- > Take Surveys. Earn Cash. Influence the Future of IT > Join SourceForge.net's Techsay panel and you'll get the chance to > share your > opinions on IT & business topics through brief surveys-and earn cash > http://www.techsay.com/default.php? > page=join.php&p=sourceforge&CID=DEVDEV > _______________________________________________ > Obi-txcomm mailing list > Obi...@li... > https://lists.sourceforge.net/lists/listinfo/obi-txcomm |
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From: Helen P. <par...@eb...> - 2007-03-19 19:08:37
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Hi can't make this Thursday, apologies, things should be better after our service review, cheers Helen Trish Whetzel wrote: > So far only myself and Liju have responded as being available this > Thursday. Chris will you be attending? Is there anyone else that has > or will submit MO terms for OBI? > > Trish > > >> In order to make sure that we cover all MO terms being proposed to OBI, can >> we have a conference call to organize who and what will be done? Are people >> available Thursday, Mar 22 at 11am EDT, 3pm GMT (looks like the UK does not >> switch to BST until after that weekend). >> >> Some items to cover are: >> -who is submitting MO terms for each of the OBI branches, are all terms >> covered >> -how can we maintain the mapping of MO terms to OBI branches >> --current proposal: a tab file listing all MO terms, definitions and a column >> for the OBI identifier(s) that the term maps to >> --post on obiwiki or magewiki so that everyone has easy access to update the >> file >> >> Trish >> >> > > ------------------------------------------------------------------------- > Take Surveys. Earn Cash. Influence the Future of IT > Join SourceForge.net's Techsay panel and you'll get the chance to share your > opinions on IT & business topics through brief surveys-and earn cash > http://www.techsay.com/default.php?page=join.php&p=sourceforge&CID=DEVDEV > _______________________________________________ > Obi-txcomm mailing list > Obi...@li... > https://lists.sourceforge.net/lists/listinfo/obi-txcomm > -- Helen Parkinson, PhD Curation Coordinator Microarray Informatics Team, EBI EBI 01223 494672 Skype: helen.parkinson.ebi |
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From: Trish W. <wh...@pc...> - 2007-03-19 18:47:57
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So far only myself and Liju have responded as being available this Thursday. Chris will you be attending? Is there anyone else that has or will submit MO terms for OBI? Trish > In order to make sure that we cover all MO terms being proposed to OBI, can > we have a conference call to organize who and what will be done? Are people > available Thursday, Mar 22 at 11am EDT, 3pm GMT (looks like the UK does not > switch to BST until after that weekend). > > Some items to cover are: > -who is submitting MO terms for each of the OBI branches, are all terms > covered > -how can we maintain the mapping of MO terms to OBI branches > --current proposal: a tab file listing all MO terms, definitions and a column > for the OBI identifier(s) that the term maps to > --post on obiwiki or magewiki so that everyone has easy access to update the > file > > Trish > |
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From: Trish W. <wh...@pc...> - 2007-03-15 18:38:39
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Thanks! T > I was reminding you > > H > > Trish Whetzel wrote: >> Ok, it is still on my To Do list to get/re-locate the proper MO terms and >> definitions to be submitted to the Plan branch if that is what you are >> referring to. If not, I'm not following :-) >> >> Trish >> >> >> >>> No that's all, BTW last time I looked the plan still had all mo terms in >>> the file. >>> >>> Trish Whetzel wrote: >>> >>>> Ok, are there MO terms that you have submitted to ObiBranches? I am aware >>>> of those that went to the BioMaterial branch, but haven't looked into >>>> other branches. As for the Plan branch, since you and I are listed there >>>> we can talk offline how to handle those once the group ok's a plan. >>>> >>>> Trish >>>> >>>> >>>>> I agree we need this, but I won't have time next week - happy to go >>>>> with the decision of the majority >>>>> >>>>> Helen >>>>> >>>>> Liju Fan wrote: >>>>> >>>>>> I'll be available for the call. >>>>>> >>>>>> Liju >>>>>> >>>>>> On 3/13/07, Trish Whetzel <wh...@pc...> wrote: >>>>>> >>>>>> >>>>>>> Hi all, >>>>>>> >>>>>>> In order to make sure that we cover all MO terms being proposed to >>>>>>> OBI, >>>>>>> can we have a conference call to organize who and what will be done? >>>>>>> Are people available Thursday, Mar 22 at 11am EDT, 3pm GMT (looks like >>>>>>> the >>>>>>> UK does not switch to BST until after that weekend). >>>>>>> >>>>>>> Some items to cover are: >>>>>>> -who is submitting MO terms for each of the OBI branches, are all >>>>>>> terms >>>>>>> covered >>>>>>> -how can we maintain the mapping of MO terms to OBI branches >>>>>>> --current proposal: a tab file listing all MO terms, definitions and a >>>>>>> column for the OBI identifier(s) that the term maps to >>>>>>> --post on obiwiki or magewiki so that everyone has easy access to >>>>>>> update >>>>>>> the file >>>>>>> >>>>>>> Trish >>>>>>> >>>>>>> >>>>>>> >>>>>>> ------------------------------------------------------------------------- >>>>>>> Take Surveys. Earn Cash. Influence the Future of IT >>>>>>> Join SourceForge.net's Techsay panel and you'll get the chance to >>>>>>> share your >>>>>>> opinions on IT & business topics through brief surveys-and earn cash >>>>>>> http://www.techsay.com/default.php?page=join.php&p=sourceforge&CID=DEVDEV >>>>>>> _______________________________________________ >>>>>>> Obi-txcomm mailing list >>>>>>> Obi...@li... >>>>>>> https://lists.sourceforge.net/lists/listinfo/obi-txcomm >>>>>>> >>>>>>> >>>>>>> >>>>>> >>>>>> >>>>> -- >>>>> Helen Parkinson, PhD >>>>> Curation Coordinator >>>>> Microarray Informatics Team, EBI >>>>> >>>>> EBI 01223 494672 >>>>> Skype: helen.parkinson.ebi >>>>> >>>>> >>> -- >>> Helen Parkinson, PhD >>> Curation Coordinator >>> Microarray Informatics Team, EBI >>> >>> EBI 01223 494672 >>> Skype: helen.parkinson.ebi >>> >>> >> >> ------------------------------------------------------------------------- >> Take Surveys. Earn Cash. Influence the Future of IT >> Join SourceForge.net's Techsay panel and you'll get the chance to share >> your >> opinions on IT & business topics through brief surveys-and earn cash >> http://www.techsay.com/default.php?page=join.php&p=sourceforge&CID=DEVDEV >> _______________________________________________ >> Obi-txcomm mailing list >> Obi...@li... >> https://lists.sourceforge.net/lists/listinfo/obi-txcomm >> > > -- > Helen Parkinson, PhD > Curation Coordinator > Microarray Informatics Team, EBI > > EBI 01223 494672 > Skype: helen.parkinson.ebi > |
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From: Helen P. <par...@eb...> - 2007-03-15 18:37:52
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I was reminding you H Trish Whetzel wrote: > Ok, it is still on my To Do list to get/re-locate the proper MO terms and > definitions to be submitted to the Plan branch if that is what you are > referring to. If not, I'm not following :-) > > Trish > > > >> No that's all, BTW last time I looked the plan still had all mo terms in the >> file. >> >> Trish Whetzel wrote: >> >>> Ok, are there MO terms that you have submitted to ObiBranches? I am aware >>> of those that went to the BioMaterial branch, but haven't looked into other >>> branches. As for the Plan branch, since you and I are listed there we can >>> talk offline how to handle those once the group ok's a plan. >>> >>> Trish >>> >>> >>>> I agree we need this, but I won't have time next week - happy to go with >>>> the decision of the majority >>>> >>>> Helen >>>> >>>> Liju Fan wrote: >>>> >>>>> I'll be available for the call. >>>>> >>>>> Liju >>>>> >>>>> On 3/13/07, Trish Whetzel <wh...@pc...> wrote: >>>>> >>>>> >>>>>> Hi all, >>>>>> >>>>>> In order to make sure that we cover all MO terms being proposed to OBI, >>>>>> can we have a conference call to organize who and what will be done? >>>>>> Are people available Thursday, Mar 22 at 11am EDT, 3pm GMT (looks like >>>>>> the >>>>>> UK does not switch to BST until after that weekend). >>>>>> >>>>>> Some items to cover are: >>>>>> -who is submitting MO terms for each of the OBI branches, are all terms >>>>>> covered >>>>>> -how can we maintain the mapping of MO terms to OBI branches >>>>>> --current proposal: a tab file listing all MO terms, definitions and a >>>>>> column for the OBI identifier(s) that the term maps to >>>>>> --post on obiwiki or magewiki so that everyone has easy access to update >>>>>> the file >>>>>> >>>>>> Trish >>>>>> >>>>>> >>>>>> ------------------------------------------------------------------------- >>>>>> Take Surveys. Earn Cash. Influence the Future of IT >>>>>> Join SourceForge.net's Techsay panel and you'll get the chance to share >>>>>> your >>>>>> opinions on IT & business topics through brief surveys-and earn cash >>>>>> http://www.techsay.com/default.php?page=join.php&p=sourceforge&CID=DEVDEV >>>>>> _______________________________________________ >>>>>> Obi-txcomm mailing list >>>>>> Obi...@li... >>>>>> https://lists.sourceforge.net/lists/listinfo/obi-txcomm >>>>>> >>>>>> >>>>>> >>>>> >>>>> >>>> -- >>>> Helen Parkinson, PhD >>>> Curation Coordinator >>>> Microarray Informatics Team, EBI >>>> >>>> EBI 01223 494672 >>>> Skype: helen.parkinson.ebi >>>> >>>> >> -- >> Helen Parkinson, PhD >> Curation Coordinator >> Microarray Informatics Team, EBI >> >> EBI 01223 494672 >> Skype: helen.parkinson.ebi >> >> > > ------------------------------------------------------------------------- > Take Surveys. Earn Cash. Influence the Future of IT > Join SourceForge.net's Techsay panel and you'll get the chance to share your > opinions on IT & business topics through brief surveys-and earn cash > http://www.techsay.com/default.php?page=join.php&p=sourceforge&CID=DEVDEV > _______________________________________________ > Obi-txcomm mailing list > Obi...@li... > https://lists.sourceforge.net/lists/listinfo/obi-txcomm > -- Helen Parkinson, PhD Curation Coordinator Microarray Informatics Team, EBI EBI 01223 494672 Skype: helen.parkinson.ebi |
