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From: <mco...@us...> - 2007-12-06 19:46:42
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Revision: 193
http://obi.svn.sourceforge.net/obi/?rev=193&view=rev
Author: mcourtot
Date: 2007-12-06 11:46:47 -0800 (Thu, 06 Dec 2007)
Log Message:
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curated microtiter_plate
Modified Paths:
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branchDevelopment/trunk/InstrumentAndPart.owl
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From: <mco...@us...> - 2007-12-06 20:07:10
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Revision: 194
http://obi.svn.sourceforge.net/obi/?rev=194&view=rev
Author: mcourtot
Date: 2007-12-06 12:07:12 -0800 (Thu, 06 Dec 2007)
Log Message:
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curated cytometer
curated waterbath (heated_bath)
Modified Paths:
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branchDevelopment/trunk/InstrumentAndPart.owl
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From: <mco...@us...> - 2007-12-06 22:35:02
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Revision: 195
http://obi.svn.sourceforge.net/obi/?rev=195&view=rev
Author: mcourtot
Date: 2007-12-06 14:35:05 -0800 (Thu, 06 Dec 2007)
Log Message:
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curated flow cytometer
Modified Paths:
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branchDevelopment/trunk/InstrumentAndPart.owl
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From: <mco...@us...> - 2007-12-06 22:45:10
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Revision: 196
http://obi.svn.sourceforge.net/obi/?rev=196&view=rev
Author: mcourtot
Date: 2007-12-06 14:45:07 -0800 (Thu, 06 Dec 2007)
Log Message:
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curated image_cytometer
Modified Paths:
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branchDevelopment/trunk/InstrumentAndPart.owl
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From: <mco...@us...> - 2007-12-06 22:49:04
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Revision: 197
http://obi.svn.sourceforge.net/obi/?rev=197&view=rev
Author: mcourtot
Date: 2007-12-06 14:49:06 -0800 (Thu, 06 Dec 2007)
Log Message:
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curated flow_cytometer_analyser
Modified Paths:
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branchDevelopment/trunk/InstrumentAndPart.owl
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From: <mco...@us...> - 2007-12-06 22:54:02
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Revision: 198
http://obi.svn.sourceforge.net/obi/?rev=198&view=rev
Author: mcourtot
Date: 2007-12-06 14:54:07 -0800 (Thu, 06 Dec 2007)
Log Message:
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curated_flow_cytometer_sorter
Modified Paths:
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branchDevelopment/trunk/InstrumentAndPart.owl
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From: <mco...@us...> - 2007-12-06 23:04:19
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Revision: 199
http://obi.svn.sourceforge.net/obi/?rev=199&view=rev
Author: mcourtot
Date: 2007-12-06 15:04:19 -0800 (Thu, 06 Dec 2007)
Log Message:
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curated some flow_cytometer_analyser
Modified Paths:
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branchDevelopment/trunk/InstrumentAndPart.owl
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From: <mco...@us...> - 2007-12-06 23:10:38
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Revision: 200
http://obi.svn.sourceforge.net/obi/?rev=200&view=rev
Author: mcourtot
Date: 2007-12-06 15:10:42 -0800 (Thu, 06 Dec 2007)
Log Message:
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curated some flow_cytometer_analyser
Modified Paths:
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branchDevelopment/trunk/InstrumentAndPart.owl
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From: <mco...@us...> - 2007-12-07 00:48:27
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Revision: 202
http://obi.svn.sourceforge.net/obi/?rev=202&view=rev
Author: mcourtot
Date: 2007-12-06 16:48:32 -0800 (Thu, 06 Dec 2007)
Log Message:
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curated FACS flow_cytometer_analyser family
Modified Paths:
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branchDevelopment/trunk/InstrumentAndPart.owl
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From: <mco...@us...> - 2007-12-07 22:31:56
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Revision: 205
http://obi.svn.sourceforge.net/obi/?rev=205&view=rev
Author: mcourtot
Date: 2007-12-07 14:32:01 -0800 (Fri, 07 Dec 2007)
Log Message:
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curation continued
Modified Paths:
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branchDevelopment/trunk/InstrumentAndPart.owl
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From: <mco...@us...> - 2007-12-07 22:44:41
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Revision: 207
http://obi.svn.sourceforge.net/obi/?rev=207&view=rev
Author: mcourtot
Date: 2007-12-07 14:44:46 -0800 (Fri, 07 Dec 2007)
Log Message:
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curated flow_cytometer_amaylser
Modified Paths:
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branchDevelopment/trunk/InstrumentAndPart.owl
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From: <mco...@us...> - 2007-12-07 23:24:50
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Revision: 208
http://obi.svn.sourceforge.net/obi/?rev=208&view=rev
Author: mcourtot
Date: 2007-12-07 15:24:55 -0800 (Fri, 07 Dec 2007)
Log Message:
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flow_cytometers curated
Modified Paths:
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branchDevelopment/trunk/InstrumentAndPart.owl
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From: <dan...@us...> - 2007-12-10 14:28:40
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Revision: 209
http://obi.svn.sourceforge.net/obi/?rev=209&view=rev
Author: daniel_schober
Date: 2007-12-10 06:28:43 -0800 (Mon, 10 Dec 2007)
Log Message:
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The following terms were curated:
* optical_subsystem
definition_citation (should be _source): http://en.wikipedia.org/wiki/Optics Intro to Flow by BD www.petermac.org/pdf/Intro%20to%20Flow%20Cytometry%20.pdf
These are inappropriate (first case) or outdated (latter case) and were deleted and 'John Quinn' put there instead.
editor_note: DS: Is 'subsytem' necessary or is 'optical_system' enough.
Not sure its graph position since an optical subsystem is not necessarily an instrument, but more likely part of one.
* diode_laser
Refined definition: A diode laser is a laser in which the active medium is a p-n junction semiconductor laser diode, similar to that found in a light-emitting diode. Laser diodes emit at wavelengths from 375 nm to 1800 nm, and wavelengths of over 3 micrometer have been demonstrated. A diode laser can by used to irradiate cells in a flow cytometer.
Updated def-editor
* dye_laser
minor orthographic corrections in def.
Updated def-editor
* gas_laser
Altered definition: A gas laser is a laser in which the lasing medium is a gas. The laser medium is places between two parallel mirrors for light emmission amplification. The gas is excited to emit light via an external light source or an electric current dischargeing through the gas.
Updated def-editor
* ion_laser
Shortened definition (skipped empirical statement of class parenthood).
Updated def-editor
* argon_ion_laser
normalized def
Updated def-editor
* krypton_ion_laser
Normalized def
Updated def-editor
* solid_state_laser
iMPROVED DEFINITION: A solid-state laser is a laser that uses a lasing medium that is a solid, rather than a liquid such as dye lasers or a gas such as gas lasers. Semiconductor-based diode lasers are also in the solid state, but are generally considered separately from solid-state lasers.
Updated def-editor
* neodymium-YAG_laser
Updated def-editor
* obscuration_bar
Updated def-editor
* heating_block
New definition: A heating block is an instrument or part of an instrument which raises or maintains the temperature of a sample to a defined constant temperature during certain parts of an assay
Updated def-editor
Additionally I have curated:
* laser
definition: A laser (acronym for light amplification by the stimulated emission of radiation) is a light source that emits photons in a coherent beam. A laser uses a solid, liquid or gaseous lasing medium, that contains molecules, of which some atoms have electrons that emit photons of the same coherent frequency when falling back to their normal orbital after excitation (stimulation) by external means. A laser is the most common way to irradiate a cell in a flow cytometer.
A general comment: I don't think we should commit on a 'per change'-basis, but on a per task basis. Having 15 revisions for one task is not necessary I belive.
Modified Paths:
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branchDevelopment/trunk/InstrumentAndPart.owl
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From: <dan...@us...> - 2007-12-11 17:31:18
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Revision: 214
http://obi.svn.sourceforge.net/obi/?rev=214&view=rev
Author: daniel_schober
Date: 2007-12-11 09:31:21 -0800 (Tue, 11 Dec 2007)
Log Message:
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Submit pdiscuss point on metadata to obi dev, also if annotation property values comma separated or associated/used multiple times, e.g. Kevin Lister, Ally as Fluometer definition editor.
Cardinal Parts get deleted and subcalsses (DS)
delete _collected_relations (FG)
_move_to_biomaterial_branch, del, and do so (FG)
FG sends email to Chris an Trish to clear need for liguid handler, and others in MO.
filtration_labware was deleted, because it had no valuable metadata anyway.
Went through issues list and DS made changes on owl file directly.ImageStream was moved under a new parent under instrument multispectral_imaging_flow_cytometer to avoid multiple parenthood.
Modified Paths:
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branchDevelopment/trunk/InstrumentAndPart.owl
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From: <mco...@us...> - 2007-12-13 23:06:02
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Revision: 217
http://obi.svn.sourceforge.net/obi/?rev=217&view=rev
Author: mcourtot
Date: 2007-12-13 15:06:04 -0800 (Thu, 13 Dec 2007)
Log Message:
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curated computer, lactoscope thermal_cycler MIFC and ImageStream
Modified Paths:
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branchDevelopment/trunk/InstrumentAndPart.owl
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From: <mco...@us...> - 2007-12-13 23:30:23
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Revision: 218
http://obi.svn.sourceforge.net/obi/?rev=218&view=rev
Author: mcourtot
Date: 2007-12-13 15:30:27 -0800 (Thu, 13 Dec 2007)
Log Message:
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curated analog-to-digital_converter
corrected definition_editor
Modified Paths:
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branchDevelopment/trunk/InstrumentAndPart.owl
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From: <mco...@us...> - 2007-12-20 23:21:07
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Revision: 227
http://obi.svn.sourceforge.net/obi/?rev=227&view=rev
Author: mcourtot
Date: 2007-12-20 15:21:10 -0800 (Thu, 20 Dec 2007)
Log Message:
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clean up a few metadata (cardinality etc)
Modified Paths:
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branchDevelopment/trunk/InstrumentAndPart.owl
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From: <mco...@us...> - 2008-02-08 20:38:53
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Revision: 297
http://obi.svn.sourceforge.net/obi/?rev=297&view=rev
Author: mcourtot
Date: 2008-02-08 12:38:49 -0800 (Fri, 08 Feb 2008)
Log Message:
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added relation to material for the defined class artefact_object
Modified Paths:
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branchDevelopment/trunk/InstrumentAndPart.owl
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From: <al...@us...> - 2008-02-09 05:16:48
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Revision: 299
http://obi.svn.sourceforge.net/obi/?rev=299&view=rev
Author: alanr
Date: 2008-02-08 21:16:50 -0800 (Fri, 08 Feb 2008)
Log Message:
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s/_defined_biomaterial/_defined_material/
Modified Paths:
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branchDevelopment/trunk/InstrumentAndPart.owl
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From: <al...@us...> - 2008-02-11 04:20:10
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Revision: 303
http://obi.svn.sourceforge.net/obi/?rev=303&view=rev
Author: alanr
Date: 2008-02-10 20:20:14 -0800 (Sun, 10 Feb 2008)
Log Message:
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remove import statements that managed to slip in.
Modified Paths:
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branchDevelopment/trunk/InstrumentAndPart.owl
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From: <dan...@us...> - 2008-02-11 13:16:37
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Revision: 305
http://obi.svn.sourceforge.net/obi/?rev=305&view=rev
Author: daniel_schober
Date: 2008-02-11 05:16:42 -0800 (Mon, 11 Feb 2008)
Log Message:
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Added def for 'labware
Moved microarray_plattform under plattform
Added class 'microarray'
Added class 'DNA-microarray' (both incl. metadata)
Modified Paths:
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branchDevelopment/trunk/InstrumentAndPart.owl
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From: <dan...@us...> - 2008-02-11 15:17:44
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Revision: 306
http://obi.svn.sourceforge.net/obi/?rev=306&view=rev
Author: daniel_schober
Date: 2008-02-11 06:38:22 -0800 (Mon, 11 Feb 2008)
Log Message:
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refined microarray subclasses, added defs
Modified Paths:
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branchDevelopment/trunk/InstrumentAndPart.owl
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From: <dan...@us...> - 2008-02-19 17:46:56
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Revision: 328
http://obi.svn.sourceforge.net/obi/?rev=328&view=rev
Author: daniel_schober
Date: 2008-02-19 09:46:27 -0800 (Tue, 19 Feb 2008)
Log Message:
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* interrogation_point--> moved to three dimensional region
* jet_in_air_flow_chamber move to 3 dim region--> moved to three dimensional region
* Moved plattform under device.
Modified Paths:
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branchDevelopment/trunk/InstrumentAndPart.owl
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From: <fgi...@us...> - 2008-02-20 10:41:44
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Revision: 330
http://obi.svn.sourceforge.net/obi/?rev=330&view=rev
Author: fgibson_sf
Date: 2008-02-20 02:41:42 -0800 (Wed, 20 Feb 2008)
Log Message:
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Added relations to device:
is_manufactured_by some (organisation or person)
has_function some obi_function
Added relations to platform:
has_part some instrument
Modified Paths:
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branchDevelopment/trunk/InstrumentAndPart.owl
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From: <dan...@us...> - 2008-02-20 12:08:09
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Revision: 331
http://obi.svn.sourceforge.net/obi/?rev=331&view=rev
Author: daniel_schober
Date: 2008-02-20 04:08:14 -0800 (Wed, 20 Feb 2008)
Log Message:
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Added '_software': This is a placeholder, as was demanded by the instrument branch. I remember we had it before, I guess it was deleted...
I have made 2 classes defined classes/XPS with the following nessecary & sufficient restrictions as discussed in yesterdays notes. However I expect these to be refined in the future, bt made them sufficient because I think we want these to be reasoned over.
device:
material+
has_function some (instrument_function or instrument part function)
is_manufactured_by some (organization or person)
plattform:
device+
(ro:has_part some instrument) and (_software or device)
Modified Paths:
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branchDevelopment/trunk/InstrumentAndPart.owl
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