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From: <al...@us...> - 2009-07-22 16:10:54
|
Revision: 1837
http://obi.svn.sourceforge.net/obi/?rev=1837&view=rev
Author: alanr
Date: 2009-07-22 16:10:52 +0000 (Wed, 22 Jul 2009)
Log Message:
-----------
really obsolete obsoleted_utilizes_device by replacing with has_participant
Modified Paths:
--------------
trunk/src/ontology/branches/PlanAndPlannedProcess.owl
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From: <al...@us...> - 2009-07-22 16:09:00
|
Revision: 1836
http://obi.svn.sourceforge.net/obi/?rev=1836&view=rev
Author: alanr
Date: 2009-07-22 16:08:51 +0000 (Wed, 22 Jul 2009)
Log Message:
-----------
added array express species
Modified Paths:
--------------
trunk/src/ontology/branches/external.owl
trunk/src/ontology/branches/externalDerived.owl
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From: <al...@us...> - 2009-07-22 15:34:29
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Revision: 1835
http://obi.svn.sourceforge.net/obi/?rev=1835&view=rev
Author: alanr
Date: 2009-07-22 15:34:23 +0000 (Wed, 22 Jul 2009)
Log Message:
-----------
from Helen Parkinson
Added Paths:
-----------
trunk/src/ontology/spreadsheets/in/array-express-species.txt
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From: <al...@us...> - 2009-07-22 02:35:40
|
Revision: 1834
http://obi.svn.sourceforge.net/obi/?rev=1834&view=rev
Author: alanr
Date: 2009-07-22 02:35:37 +0000 (Wed, 22 Jul 2009)
Log Message:
-----------
restrictions noted in email to obi-dev. Performance tweak
Modified Paths:
--------------
trunk/src/ontology/branches/DataTransformation.owl
trunk/src/ontology/branches/InstrumentAndPart.owl
trunk/src/ontology/branches/PlanAndPlannedProcess.owl
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From: <mco...@us...> - 2009-07-22 01:29:54
|
Revision: 1833
http://obi.svn.sourceforge.net/obi/?rev=1833&view=rev
Author: mcourtot
Date: 2009-07-22 01:29:53 +0000 (Wed, 22 Jul 2009)
Log Message:
-----------
version commented by Chris S.
Modified Paths:
--------------
trunk/docs/papers/release/Release-Manuscript-Master-shortened.doc
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From: <al...@us...> - 2009-07-21 23:52:47
|
Revision: 1832
http://obi.svn.sourceforge.net/obi/?rev=1832&view=rev
Author: alanr
Date: 2009-07-21 23:52:45 +0000 (Tue, 21 Jul 2009)
Log Message:
-----------
correct obofoundry -> obolibrary
Modified Paths:
--------------
trunk/src/ontology/branches/externalDerived.owl
trunk/src/tools/build/create-external-derived.lisp
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From: <jgr...@us...> - 2009-07-21 21:37:45
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Revision: 1831
http://obi.svn.sourceforge.net/obi/?rev=1831&view=rev
Author: jgreenbaum
Date: 2009-07-21 21:37:40 +0000 (Tue, 21 Jul 2009)
Log Message:
-----------
updated URI of IAO to dev version
Modified Paths:
--------------
branches/ontie-dev/src/ontology/modules/ONTIE/obi-ontie-external.owl
branches/ontie-dev/src/ontology/modules/ONTIE/obi-ontie.owl.template
branches/ontie-dev/src/ontology/modules/ONTIE/ontie-external.owl
branches/ontie-dev/src/ontology/modules/ONTIE/ontie-minimal.owl.template
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From: <jgr...@us...> - 2009-07-21 21:10:06
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Revision: 1830
http://obi.svn.sourceforge.net/obi/?rev=1830&view=rev
Author: jgreenbaum
Date: 2009-07-21 21:09:58 +0000 (Tue, 21 Jul 2009)
Log Message:
-----------
changed UNIX newlines to DOS in repository files
Modified Paths:
--------------
branches/ontie-dev/src/ontology/modules/ONTIE/obi-ontie.repository.template
branches/ontie-dev/src/ontology/modules/ONTIE/ontie-minimal.repository.template
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From: <al...@us...> - 2009-07-21 19:52:10
|
Revision: 1829
http://obi.svn.sourceforge.net/obi/?rev=1829&view=rev
Author: alanr
Date: 2009-07-21 19:52:08 +0000 (Tue, 21 Jul 2009)
Log Message:
-----------
add dozen most common model organisms 9606 human,10116 rat,10090 mouse,7227 fly,6239 nematode,9913 cow,9615 dog,7955 zebrafish,9031 chicken,9598 chimpanzee,9823 pig,8355 Xenopus
Modified Paths:
--------------
trunk/src/ontology/branches/external.owl
trunk/src/ontology/branches/externalDerived.owl
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From: <al...@us...> - 2009-07-21 19:49:29
|
Revision: 1828
http://obi.svn.sourceforge.net/obi/?rev=1828&view=rev
Author: alanr
Date: 2009-07-21 19:49:26 +0000 (Tue, 21 Jul 2009)
Log Message:
-----------
fix for obo sparql endpoint
Modified Paths:
--------------
trunk/src/tools/build/external-templates.txt
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From: <mco...@us...> - 2009-07-21 01:34:39
|
Revision: 1827
http://obi.svn.sourceforge.net/obi/?rev=1827&view=rev
Author: mcourtot
Date: 2009-07-21 01:34:35 +0000 (Tue, 21 Jul 2009)
Log Message:
-----------
updated java code
Modified Paths:
--------------
trunk/src/tools/build/OBITools/OBITools.jar
trunk/src/tools/build/OBITools/src/ca/bccrc/obi/OBIMerger.java
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From: <mco...@us...> - 2009-07-21 01:28:47
|
Revision: 1826
http://obi.svn.sourceforge.net/obi/?rev=1826&view=rev
Author: mcourtot
Date: 2009-07-21 01:28:45 +0000 (Tue, 21 Jul 2009)
Log Message:
-----------
updated obofoundry -> obolibrary
Modified Paths:
--------------
trunk/src/tools/build/OBIrelease.sh
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From: <al...@us...> - 2009-07-21 01:10:37
|
Revision: 1825
http://obi.svn.sourceforge.net/obi/?rev=1825&view=rev
Author: alanr
Date: 2009-07-21 01:10:30 +0000 (Tue, 21 Jul 2009)
Log Message:
-----------
adjust obofoundry->obolibrary
Modified Paths:
--------------
trunk/src/tools/build/qc-queries.lisp
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From: <al...@us...> - 2009-07-21 00:53:54
|
Revision: 1824
http://obi.svn.sourceforge.net/obi/?rev=1824&view=rev
Author: alanr
Date: 2009-07-21 00:53:43 +0000 (Tue, 21 Jul 2009)
Log Message:
-----------
try again
Modified Paths:
--------------
trunk/src/tools/build/modify-uris.pl
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From: <mco...@us...> - 2009-07-21 00:28:08
|
Revision: 1823
http://obi.svn.sourceforge.net/obi/?rev=1823&view=rev
Author: mcourtot
Date: 2009-07-21 00:28:05 +0000 (Tue, 21 Jul 2009)
Log Message:
-----------
updated to IAO uppercase
removed extra trailing slash
Modified Paths:
--------------
trunk/src/tools/build/OBIrelease.sh
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From: <al...@us...> - 2009-07-21 00:11:18
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Revision: 1822
http://obi.svn.sourceforge.net/obi/?rev=1822&view=rev
Author: alanr
Date: 2009-07-21 00:11:15 +0000 (Tue, 21 Jul 2009)
Log Message:
-----------
look in /instances for parts too
Modified Paths:
--------------
trunk/src/tools/build/modify-uris.pl
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From: <mco...@us...> - 2009-07-20 23:56:43
|
Revision: 1821
http://obi.svn.sourceforge.net/obi/?rev=1821&view=rev
Author: mcourtot
Date: 2009-07-20 23:56:38 +0000 (Mon, 20 Jul 2009)
Log Message:
-----------
modified with new path for lsw ABCL
Modified Paths:
--------------
trunk/src/tools/build/OBIrelease.sh
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From: <mco...@us...> - 2009-07-20 19:26:37
|
Revision: 1820
http://obi.svn.sourceforge.net/obi/?rev=1820&view=rev
Author: mcourtot
Date: 2009-07-20 19:26:34 +0000 (Mon, 20 Jul 2009)
Log Message:
-----------
removed extra subclassOf declaration for soil
Modified Paths:
--------------
trunk/src/ontology/branches/externalDerived.owl
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From: <jgr...@us...> - 2009-07-17 17:25:58
|
Revision: 1819
http://obi.svn.sourceforge.net/obi/?rev=1819&view=rev
Author: jgreenbaum
Date: 2009-07-17 17:25:55 +0000 (Fri, 17 Jul 2009)
Log Message:
-----------
ontie-minimal files now working
Modified Paths:
--------------
branches/ontie-dev/src/ontology/modules/ONTIE/ONTIE.owl
branches/ontie-dev/src/ontology/modules/ONTIE/ontie-external.owl
branches/ontie-dev/src/ontology/modules/ONTIE/ontie-minimal.owl.template
branches/ontie-dev/src/ontology/modules/ONTIE/ontie-minimal.pprj.template
branches/ontie-dev/src/ontology/modules/ONTIE/ontie-minimal.repository.template
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
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From: <jam...@us...> - 2009-07-17 16:44:54
|
Revision: 1818
http://obi.svn.sourceforge.net/obi/?rev=1818&view=rev
Author: jamesmalone
Date: 2009-07-17 16:44:51 +0000 (Fri, 17 Jul 2009)
Log Message:
-----------
more data visualization stuff
Modified Paths:
--------------
trunk/src/ontology/branches/DataTransformation.owl
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From: <jgr...@us...> - 2009-07-17 00:38:25
|
Revision: 1817
http://obi.svn.sourceforge.net/obi/?rev=1817&view=rev
Author: jgreenbaum
Date: 2009-07-17 00:38:22 +0000 (Fri, 17 Jul 2009)
Log Message:
-----------
* Merged trunk with branch to incorporate URI changes
* obi-ontie files are working
* ontie-minimal files are not
Modified Paths:
--------------
branches/ontie-dev/docs/papers/release/Release-Manuscript-Master-shortened.doc
branches/ontie-dev/src/examples/development/OBIIrradiated/OBIIrradiated.owl
branches/ontie-dev/src/examples/development/alternate_concentration_bp/obi.owl
branches/ontie-dev/src/examples/development/concentration-alanr.owl
branches/ontie-dev/src/examples/development/concentration-demoed-vancouver-2009.owl
branches/ontie-dev/src/ontology/branches/AnnotationProperty.owl
branches/ontie-dev/src/ontology/branches/Biomaterial.owl
branches/ontie-dev/src/ontology/branches/DataFormatSpecification.owl
branches/ontie-dev/src/ontology/branches/DataTransformation.owl
branches/ontie-dev/src/ontology/branches/DigitalEntityPlus.owl
branches/ontie-dev/src/ontology/branches/InstrumentAndPart.owl
branches/ontie-dev/src/ontology/branches/OBI-Function.owl
branches/ontie-dev/src/ontology/branches/Obsolete.owl
branches/ontie-dev/src/ontology/branches/PlanAndPlannedProcess.owl
branches/ontie-dev/src/ontology/branches/Quality.owl
branches/ontie-dev/src/ontology/branches/Relations.owl
branches/ontie-dev/src/ontology/branches/Role.owl
branches/ontie-dev/src/ontology/branches/external-byhand.owl
branches/ontie-dev/src/ontology/branches/external.owl
branches/ontie-dev/src/ontology/branches/externalDerived.owl
branches/ontie-dev/src/ontology/branches/instances/dataTransformationInstances.owl
branches/ontie-dev/src/ontology/branches/instances/softwareInstances.owl
branches/ontie-dev/src/ontology/branches/obi-lsw.owl.template
branches/ontie-dev/src/ontology/branches/obi-owl-full.owl
branches/ontie-dev/src/ontology/branches/obi-quick-id.owl
branches/ontie-dev/src/ontology/branches/obi.obo
branches/ontie-dev/src/ontology/branches/obi.owl.template
branches/ontie-dev/src/ontology/branches/obi.pprj.template
branches/ontie-dev/src/ontology/branches/obi.repository.template
branches/ontie-dev/src/ontology/branches/obid.owl
branches/ontie-dev/src/ontology/branches/obidi.owl
branches/ontie-dev/src/ontology/branches/obil.owl
branches/ontie-dev/src/ontology/modules/ONTIE/ONTIE.owl
branches/ontie-dev/src/ontology/modules/ONTIE/obi-ontie.owl.template
branches/ontie-dev/src/ontology/modules/ONTIE/obi-ontie.pprj.template
branches/ontie-dev/src/ontology/modules/ONTIE/obi-ontie.repository.template
branches/ontie-dev/src/ontology/modules/ONTIE/ontie-external.owl
branches/ontie-dev/src/tools/build/modify-uris.pl
branches/ontie-dev/src/tools/build/util.lisp
Added Paths:
-----------
branches/ontie-dev/docs/papers/release/release.Data/
branches/ontie-dev/docs/papers/release/release.Data/Trash/
branches/ontie-dev/docs/papers/release/release.Data/Trash/Trash.Data/
branches/ontie-dev/docs/papers/release/release.Data/Trash/Trash.Data/rdb/
branches/ontie-dev/docs/papers/release/release.Data/Trash/Trash.Data/rdb/csort.MYD
branches/ontie-dev/docs/papers/release/release.Data/Trash/Trash.Data/rdb/csort.MYI
branches/ontie-dev/docs/papers/release/release.Data/Trash/Trash.Data/rdb/csort.frm
branches/ontie-dev/docs/papers/release/release.Data/Trash/Trash.Data/rdb/db.opt
branches/ontie-dev/docs/papers/release/release.Data/Trash/Trash.Data/rdb/jterms.MYD
branches/ontie-dev/docs/papers/release/release.Data/Trash/Trash.Data/rdb/jterms.MYI
branches/ontie-dev/docs/papers/release/release.Data/Trash/Trash.Data/rdb/jterms.frm
branches/ontie-dev/docs/papers/release/release.Data/Trash/Trash.Data/rdb/misc.MYD
branches/ontie-dev/docs/papers/release/release.Data/Trash/Trash.Data/rdb/misc.MYI
branches/ontie-dev/docs/papers/release/release.Data/Trash/Trash.Data/rdb/misc.frm
branches/ontie-dev/docs/papers/release/release.Data/Trash/Trash.Data/rdb/refs.MYD
branches/ontie-dev/docs/papers/release/release.Data/Trash/Trash.Data/rdb/refs.MYI
branches/ontie-dev/docs/papers/release/release.Data/Trash/Trash.Data/rdb/refs.frm
branches/ontie-dev/docs/papers/release/release.Data/Trash/Trash.Data/rdb/refs_ext.MYD
branches/ontie-dev/docs/papers/release/release.Data/Trash/Trash.Data/rdb/refs_ext.MYI
branches/ontie-dev/docs/papers/release/release.Data/Trash/Trash.Data/rdb/refs_ext.frm
branches/ontie-dev/docs/papers/release/release.Data/Trash/Trash.Data/rdb/terms.MYD
branches/ontie-dev/docs/papers/release/release.Data/Trash/Trash.Data/rdb/terms.MYI
branches/ontie-dev/docs/papers/release/release.Data/Trash/Trash.Data/rdb/terms.frm
branches/ontie-dev/docs/papers/release/release.Data/Trash/Trash.enl
branches/ontie-dev/docs/papers/release/release.Data/rdb/
branches/ontie-dev/docs/papers/release/release.Data/rdb/csort.MYD
branches/ontie-dev/docs/papers/release/release.Data/rdb/csort.MYI
branches/ontie-dev/docs/papers/release/release.Data/rdb/csort.frm
branches/ontie-dev/docs/papers/release/release.Data/rdb/db.opt
branches/ontie-dev/docs/papers/release/release.Data/rdb/jterms.MYD
branches/ontie-dev/docs/papers/release/release.Data/rdb/jterms.MYI
branches/ontie-dev/docs/papers/release/release.Data/rdb/jterms.frm
branches/ontie-dev/docs/papers/release/release.Data/rdb/misc.MYD
branches/ontie-dev/docs/papers/release/release.Data/rdb/misc.MYI
branches/ontie-dev/docs/papers/release/release.Data/rdb/misc.frm
branches/ontie-dev/docs/papers/release/release.Data/rdb/refs.MYD
branches/ontie-dev/docs/papers/release/release.Data/rdb/refs.MYI
branches/ontie-dev/docs/papers/release/release.Data/rdb/refs.frm
branches/ontie-dev/docs/papers/release/release.Data/rdb/refs_ext.MYD
branches/ontie-dev/docs/papers/release/release.Data/rdb/refs_ext.MYI
branches/ontie-dev/docs/papers/release/release.Data/rdb/refs_ext.frm
branches/ontie-dev/docs/papers/release/release.Data/rdb/terms.MYD
branches/ontie-dev/docs/papers/release/release.Data/rdb/terms.MYI
branches/ontie-dev/docs/papers/release/release.Data/rdb/terms.frm
branches/ontie-dev/docs/papers/release/release.enl
branches/ontie-dev/src/ontology/files-with-foundry-uris.txt
branches/ontie-dev/src/ontology/january-prerelease-compat.owl
branches/ontie-dev/src/ontology/modules/ONTIE/obi-ontie-external.owl
Removed Paths:
-------------
branches/ontie-dev/docs/papers/release/release.Data/Trash/
branches/ontie-dev/docs/papers/release/release.Data/Trash/Trash.Data/
branches/ontie-dev/docs/papers/release/release.Data/Trash/Trash.Data/rdb/
branches/ontie-dev/docs/papers/release/release.Data/Trash/Trash.Data/rdb/csort.MYD
branches/ontie-dev/docs/papers/release/release.Data/Trash/Trash.Data/rdb/csort.MYI
branches/ontie-dev/docs/papers/release/release.Data/Trash/Trash.Data/rdb/csort.frm
branches/ontie-dev/docs/papers/release/release.Data/Trash/Trash.Data/rdb/db.opt
branches/ontie-dev/docs/papers/release/release.Data/Trash/Trash.Data/rdb/jterms.MYD
branches/ontie-dev/docs/papers/release/release.Data/Trash/Trash.Data/rdb/jterms.MYI
branches/ontie-dev/docs/papers/release/release.Data/Trash/Trash.Data/rdb/jterms.frm
branches/ontie-dev/docs/papers/release/release.Data/Trash/Trash.Data/rdb/misc.MYD
branches/ontie-dev/docs/papers/release/release.Data/Trash/Trash.Data/rdb/misc.MYI
branches/ontie-dev/docs/papers/release/release.Data/Trash/Trash.Data/rdb/misc.frm
branches/ontie-dev/docs/papers/release/release.Data/Trash/Trash.Data/rdb/refs.MYD
branches/ontie-dev/docs/papers/release/release.Data/Trash/Trash.Data/rdb/refs.MYI
branches/ontie-dev/docs/papers/release/release.Data/Trash/Trash.Data/rdb/refs.frm
branches/ontie-dev/docs/papers/release/release.Data/Trash/Trash.Data/rdb/refs_ext.MYD
branches/ontie-dev/docs/papers/release/release.Data/Trash/Trash.Data/rdb/refs_ext.MYI
branches/ontie-dev/docs/papers/release/release.Data/Trash/Trash.Data/rdb/refs_ext.frm
branches/ontie-dev/docs/papers/release/release.Data/Trash/Trash.Data/rdb/terms.MYD
branches/ontie-dev/docs/papers/release/release.Data/Trash/Trash.Data/rdb/terms.MYI
branches/ontie-dev/docs/papers/release/release.Data/Trash/Trash.Data/rdb/terms.frm
branches/ontie-dev/docs/papers/release/release.Data/Trash/Trash.enl
branches/ontie-dev/docs/papers/release/release.Data/rdb/
branches/ontie-dev/docs/papers/release/release.Data/rdb/csort.MYD
branches/ontie-dev/docs/papers/release/release.Data/rdb/csort.MYI
branches/ontie-dev/docs/papers/release/release.Data/rdb/csort.frm
branches/ontie-dev/docs/papers/release/release.Data/rdb/db.opt
branches/ontie-dev/docs/papers/release/release.Data/rdb/jterms.MYD
branches/ontie-dev/docs/papers/release/release.Data/rdb/jterms.MYI
branches/ontie-dev/docs/papers/release/release.Data/rdb/jterms.frm
branches/ontie-dev/docs/papers/release/release.Data/rdb/misc.MYD
branches/ontie-dev/docs/papers/release/release.Data/rdb/misc.MYI
branches/ontie-dev/docs/papers/release/release.Data/rdb/misc.frm
branches/ontie-dev/docs/papers/release/release.Data/rdb/refs.MYD
branches/ontie-dev/docs/papers/release/release.Data/rdb/refs.MYI
branches/ontie-dev/docs/papers/release/release.Data/rdb/refs.frm
branches/ontie-dev/docs/papers/release/release.Data/rdb/refs_ext.MYD
branches/ontie-dev/docs/papers/release/release.Data/rdb/refs_ext.MYI
branches/ontie-dev/docs/papers/release/release.Data/rdb/refs_ext.frm
branches/ontie-dev/docs/papers/release/release.Data/rdb/terms.MYD
branches/ontie-dev/docs/papers/release/release.Data/rdb/terms.MYI
branches/ontie-dev/docs/papers/release/release.Data/rdb/terms.frm
Property Changed:
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branches/ontie-dev/
branches/ontie-dev/src/ontology/external/
branches/ontie-dev/src/ontology/modules/ONTIE/obi-ontie.owl.template
branches/ontie-dev/src/ontology/modules/ONTIE/obi-ontie.pprj.template
branches/ontie-dev/src/ontology/modules/ONTIE/obi-ontie.repository.template
branches/ontie-dev/src/ontology/modules/ONTIE/ontie-minimal.owl.template
branches/ontie-dev/src/ontology/modules/ONTIE/ontie-minimal.pprj.template
branches/ontie-dev/src/ontology/modules/ONTIE/ontie-minimal.repository.template
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
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From: <mco...@us...> - 2009-07-16 19:24:08
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Revision: 1816
http://obi.svn.sourceforge.net/obi/?rev=1816&view=rev
Author: mcourtot
Date: 2009-07-16 19:24:03 +0000 (Thu, 16 Jul 2009)
Log Message:
-----------
updated import of http://purl.obolibrary.org/obo/dev/iao.owl to be http://purl.obolibrary.org/obo/iao/dev/iao.owl
Modified Paths:
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trunk/src/ontology/branches/obi.owl.template
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From: <jam...@us...> - 2009-07-16 17:08:21
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Revision: 1815
http://obi.svn.sourceforge.net/obi/?rev=1815&view=rev
Author: jamesmalone
Date: 2009-07-16 17:08:19 +0000 (Thu, 16 Jul 2009)
Log Message:
-----------
corrected axioms so it infers under information processing now
Modified Paths:
--------------
trunk/src/ontology/branches/DataTransformation.owl
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From: <al...@us...> - 2009-07-16 12:11:04
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Revision: 1814
http://obi.svn.sourceforge.net/obi/?rev=1814&view=rev
Author: alanr
Date: 2009-07-16 12:11:03 +0000 (Thu, 16 Jul 2009)
Log Message:
-----------
fix related to url changes
Modified Paths:
--------------
trunk/src/ontology/branches/obi.repository.template
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
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From: <al...@us...> - 2009-07-16 11:53:10
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Revision: 1813
http://obi.svn.sourceforge.net/obi/?rev=1813&view=rev
Author: alanr
Date: 2009-07-16 11:53:03 +0000 (Thu, 16 Jul 2009)
Log Message:
-----------
adjust for obolibrary
Modified Paths:
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trunk/src/ontology/branches/obi.owl.template
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