Menu
▾
▴
obi-svn-commit — Mailing list to receive notices of commits to the OBI SVN.
You can subscribe to this list here.
| 2007 |
Jan
|
Feb
|
Mar
|
Apr
(3) |
May
(6) |
Jun
(29) |
Jul
(37) |
Aug
(20) |
Sep
(9) |
Oct
(24) |
Nov
(14) |
Dec
(39) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 2008 |
Jan
(61) |
Feb
(64) |
Mar
(118) |
Apr
(92) |
May
(130) |
Jun
(106) |
Jul
(86) |
Aug
(32) |
Sep
(65) |
Oct
(126) |
Nov
(125) |
Dec
(82) |
| 2009 |
Jan
(118) |
Feb
(99) |
Mar
(140) |
Apr
(30) |
May
(25) |
Jun
(43) |
Jul
(152) |
Aug
(130) |
Sep
(43) |
Oct
(285) |
Nov
(214) |
Dec
(96) |
| 2010 |
Jan
(44) |
Feb
(26) |
Mar
(143) |
Apr
(24) |
May
(36) |
Jun
(42) |
Jul
(12) |
Aug
(29) |
Sep
(7) |
Oct
(24) |
Nov
(6) |
Dec
(27) |
| 2011 |
Jan
(4) |
Feb
(6) |
Mar
(28) |
Apr
(37) |
May
(27) |
Jun
(25) |
Jul
(68) |
Aug
(14) |
Sep
(8) |
Oct
(36) |
Nov
(10) |
Dec
(33) |
| 2012 |
Jan
(56) |
Feb
(14) |
Mar
(32) |
Apr
(22) |
May
(35) |
Jun
(41) |
Jul
(66) |
Aug
(1) |
Sep
(7) |
Oct
(6) |
Nov
(6) |
Dec
(4) |
| 2013 |
Jan
(9) |
Feb
(5) |
Mar
(21) |
Apr
(18) |
May
(24) |
Jun
(33) |
Jul
(4) |
Aug
(7) |
Sep
(17) |
Oct
(50) |
Nov
(18) |
Dec
(10) |
| 2014 |
Jan
(1) |
Feb
(3) |
Mar
(12) |
Apr
(2) |
May
(2) |
Jun
(2) |
Jul
|
Aug
(4) |
Sep
(2) |
Oct
(1) |
Nov
(3) |
Dec
(9) |
| 2015 |
Jan
(6) |
Feb
(2) |
Mar
(15) |
Apr
(2) |
May
(5) |
Jun
(4) |
Jul
(2) |
Aug
(5) |
Sep
(8) |
Oct
(3) |
Nov
(9) |
Dec
(18) |
| 2016 |
Jan
(3) |
Feb
(2) |
Mar
(15) |
Apr
(1) |
May
(4) |
Jun
(10) |
Jul
(2) |
Aug
(2) |
Sep
(5) |
Oct
(5) |
Nov
|
Dec
|
| 2017 |
Jan
(4) |
Feb
|
Mar
|
Apr
|
May
|
Jun
|
Jul
|
Aug
|
Sep
|
Oct
|
Nov
|
Dec
|
|
From: <jam...@us...> - 2013-11-01 17:46:00
|
Revision: 3888
http://sourceforge.net/p/obi/code/3888
Author: jamesaoverton
Date: 2013-11-01 17:45:58 +0000 (Fri, 01 Nov 2013)
Log Message:
-----------
Builder should not fail on missing catalog.xml file.
Modified Paths:
--------------
trunk/src/tools/build/src/main/java/obi/Builder.java
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <p_r...@us...> - 2013-10-31 16:00:15
|
Revision: 3887
http://sourceforge.net/p/obi/code/3887
Author: p_rocca_serra
Date: 2013-10-31 16:00:13 +0000 (Thu, 31 Oct 2013)
Log Message:
-----------
fix to gtt assay, change logged as editor note
Modified Paths:
--------------
trunk/src/ontology/branches/obi.owl
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <jam...@us...> - 2013-10-25 23:11:15
|
Revision: 3886
http://sourceforge.net/p/obi/code/3886
Author: jamesaoverton
Date: 2013-10-25 23:11:10 +0000 (Fri, 25 Oct 2013)
Log Message:
-----------
OBI release candidate 2013-10-25.
Added Paths:
-----------
releases/2013-10-25/
releases/2013-10-25/README.txt
releases/2013-10-25/branches/
releases/2013-10-25/branches/OntoFox_inputs/
releases/2013-10-25/branches/OntoFox_inputs/ChEBI_input.txt
releases/2013-10-25/branches/OntoFox_inputs/GO_input.txt
releases/2013-10-25/branches/OntoFox_inputs/NCBITaxon_input.txt
releases/2013-10-25/branches/OntoFox_inputs/OBO_input.txt
releases/2013-10-25/branches/OntoFox_inputs/PATO_input.txt
releases/2013-10-25/branches/OntoFox_inputs/UO_input.txt
releases/2013-10-25/branches/OntoFox_inputs/UO_input_instance.txt
releases/2013-10-25/branches/OntoFox_inputs/readme.txt
releases/2013-10-25/branches/OntoFox_outputs/
releases/2013-10-25/branches/OntoFox_outputs/ChEBI_imports.owl
releases/2013-10-25/branches/OntoFox_outputs/GO_imports.owl
releases/2013-10-25/branches/OntoFox_outputs/NCBITaxon_imports.owl
releases/2013-10-25/branches/OntoFox_outputs/OBO_imports.owl
releases/2013-10-25/branches/OntoFox_outputs/PATO_imports.owl
releases/2013-10-25/branches/OntoFox_outputs/UO_imports.owl
releases/2013-10-25/branches/OntoFox_outputs/UO_instance_imports.owl
releases/2013-10-25/branches/catalog-v001.xml
releases/2013-10-25/branches/doap.template
releases/2013-10-25/branches/external-byhand.owl
releases/2013-10-25/branches/obi.owl
releases/2013-10-25/docs/
releases/2013-10-25/docs/newIDs.tab
releases/2013-10-25/docs/obi.tsv
releases/2013-10-25/docs/obi.txt
releases/2013-10-25/docs/obi_core.tsv
releases/2013-10-25/docs/obi_core.txt
releases/2013-10-25/docs/obi_iedb.tsv
releases/2013-10-25/docs/obi_iedb.txt
releases/2013-10-25/docs/obi_isa.tsv
releases/2013-10-25/docs/obi_isa.txt
releases/2013-10-25/external/
releases/2013-10-25/external/bfo2-alan/
releases/2013-10-25/external/bfo2-alan/README
releases/2013-10-25/external/bfo2-alan/bfo-relations.lisp
releases/2013-10-25/external/bfo2-alan/bfo1.1-to-2.lisp
releases/2013-10-25/external/bfo2-alan/ruttenberg-bfo2-all.owl
releases/2013-10-25/external/bfo2-alan/ruttenberg-bfo2-classes.obo
releases/2013-10-25/external/bfo2-alan/ruttenberg-bfo2-granularity.owl
releases/2013-10-25/external/bfo2-alan/ruttenberg-bfo2-regions.owl
releases/2013-10-25/external/bfo2-alan/ruttenberg-bfo2-relations.obo
releases/2013-10-25/external/bfo2-alan/ruttenberg-bfo2.owl
releases/2013-10-25/external/bfo2-alan/ruttenberg-classes.owl
releases/2013-10-25/external/bfo2-alan/ruttenberg-granularity.owl
releases/2013-10-25/external/bfo2-alan/ruttenberg-regions.owl
releases/2013-10-25/external/bfo2-alan/ruttenberg-relations-biotop-equiv.owl
releases/2013-10-25/external/bfo2-alan/ruttenberg-relations.owl
releases/2013-10-25/external/iao-bfo2/
releases/2013-10-25/external/iao-bfo2/IAO.owl
releases/2013-10-25/external/iao-bfo2/catalog-v001.xml
releases/2013-10-25/external/iao-bfo2/external.owl
releases/2013-10-25/external/iao-bfo2/externalByHand.owl
releases/2013-10-25/external/iao-bfo2/externalDerived.owl
releases/2013-10-25/external/iao-bfo2/iao-main.owl
releases/2013-10-25/external/iao-bfo2/iao-main_last_commit.owl
releases/2013-10-25/external/iao-bfo2/obsolete.owl
releases/2013-10-25/external/iao-bfo2/ontology-metadata.owl
releases/2013-10-25/external/protege-dc.owl
releases/2013-10-25/obi.owl
releases/2013-10-25/obi_core.owl
releases/2013-10-25/obi_iedb.owl
releases/2013-10-25/obi_isa.owl
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <jam...@us...> - 2013-10-25 22:30:34
|
Revision: 3885
http://sourceforge.net/p/obi/code/3885
Author: jamesaoverton
Date: 2013-10-25 22:30:31 +0000 (Fri, 25 Oct 2013)
Log Message:
-----------
Removing unreleased obsolete classes from cell line experiments as decided on 2013-10-21 call: OBI_0001855 OBI_0001856 OBI_0001860 OBI_0001865 OBI_0001869 OBI_0001870 OBI_0001871 OBI_0001872 OBI_0001873 OBI_0001874 OBI_0001877 OBI_0001913.
Modified Paths:
--------------
trunk/src/ontology/branches/obi.owl
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <jam...@us...> - 2013-10-25 22:27:11
|
Revision: 3884
http://sourceforge.net/p/obi/code/3884
Author: jamesaoverton
Date: 2013-10-25 22:27:10 +0000 (Fri, 25 Oct 2013)
Log Message:
-----------
Bugfix for Differ: replace newlines in axiom strings.
Modified Paths:
--------------
trunk/src/tools/build/src/main/java/obi/Differ.java
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <jam...@us...> - 2013-10-25 22:14:34
|
Revision: 3883
http://sourceforge.net/p/obi/code/3883
Author: jamesaoverton
Date: 2013-10-25 22:14:30 +0000 (Fri, 25 Oct 2013)
Log Message:
-----------
Updated build tool README file.
Modified Paths:
--------------
trunk/src/tools/build/README.md
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <jam...@us...> - 2013-10-25 22:00:32
|
Revision: 3882
http://sourceforge.net/p/obi/code/3882
Author: jamesaoverton
Date: 2013-10-25 22:00:30 +0000 (Fri, 25 Oct 2013)
Log Message:
-----------
Updating start counter for assigning new OBI IDs.
Modified Paths:
--------------
trunk/src/tools/build/src/main/java/obi/Assigner.java
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <jam...@us...> - 2013-10-25 21:31:57
|
Revision: 3881
http://sourceforge.net/p/obi/code/3881
Author: jamesaoverton
Date: 2013-10-25 21:31:56 +0000 (Fri, 25 Oct 2013)
Log Message:
-----------
Added newIDs tab file for 'has specified value' and 'has value specification'.
Added Paths:
-----------
trunk/src/ontology/spreadsheets/new_ids/newIDs_20131025.tab
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <jam...@us...> - 2013-10-25 21:30:25
|
Revision: 3880
http://sourceforge.net/p/obi/code/3880
Author: jamesaoverton
Date: 2013-10-25 21:30:22 +0000 (Fri, 25 Oct 2013)
Log Message:
-----------
Added 'has specified value' DataProperty and 'has value specification' ObjectProperty; revised 'measurement data item', 'scalar measurement data item', and 'categorical measurement data item' to use them; have NOT revised other descendants of 'measurement data item'; revised 'scalar value specification' to use 'has specified value'.
Modified Paths:
--------------
trunk/src/ontology/branches/obi.owl
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <jam...@us...> - 2013-10-25 18:20:49
|
Revision: 3879
http://sourceforge.net/p/obi/code/3879
Author: jamesaoverton
Date: 2013-10-25 18:20:46 +0000 (Fri, 25 Oct 2013)
Log Message:
-----------
Committing changes to OBI from 2013-10-21 call; see 'Critical' sheet of Google Spreadsheet at https://docs.google.com/spreadsheet/ccc?key=0AnbOUYWIQYUEdE80Vm9uQnhFZm5CelJEeHVKbUx2LWc&usp=sharing
Modified Paths:
--------------
trunk/src/ontology/branches/obi.owl
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <jam...@us...> - 2013-10-25 18:08:06
|
Revision: 3878
http://sourceforge.net/p/obi/code/3878
Author: jamesaoverton
Date: 2013-10-25 18:08:04 +0000 (Fri, 25 Oct 2013)
Log Message:
-----------
Clean up debugging messages in Differ.
Modified Paths:
--------------
trunk/src/tools/build/src/main/java/obi/Differ.java
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <jam...@us...> - 2013-10-25 18:07:22
|
Revision: 3877
http://sourceforge.net/p/obi/code/3877
Author: jamesaoverton
Date: 2013-10-25 18:07:20 +0000 (Fri, 25 Oct 2013)
Log Message:
-----------
Smarter Differ class now includes rdfs:labels.
Modified Paths:
--------------
trunk/src/tools/build/src/main/java/obi/Differ.java
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <jam...@us...> - 2013-10-25 18:03:21
|
Revision: 3876
http://sourceforge.net/p/obi/code/3876
Author: jamesaoverton
Date: 2013-10-25 18:03:18 +0000 (Fri, 25 Oct 2013)
Log Message:
-----------
Smarter Differ class now includes rdfs:labels.
Modified Paths:
--------------
trunk/src/tools/build/src/main/java/obi/Differ.java
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <jam...@us...> - 2013-10-24 17:15:14
|
Revision: 3875
http://sourceforge.net/p/obi/code/3875
Author: jamesaoverton
Date: 2013-10-24 17:15:09 +0000 (Thu, 24 Oct 2013)
Log Message:
-----------
Minor fixes to docstrings for Differ class.
Modified Paths:
--------------
trunk/src/tools/build/src/main/java/obi/Differ.java
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <jam...@us...> - 2013-10-24 17:00:15
|
Revision: 3874
http://sourceforge.net/p/obi/code/3874
Author: jamesaoverton
Date: 2013-10-24 17:00:09 +0000 (Thu, 24 Oct 2013)
Log Message:
-----------
Added diff task for checking branches/obi.owl changes.
Modified Paths:
--------------
trunk/src/tools/build/build.xml
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <jam...@us...> - 2013-10-24 16:58:04
|
Revision: 3873
http://sourceforge.net/p/obi/code/3873
Author: jamesaoverton
Date: 2013-10-24 16:58:01 +0000 (Thu, 24 Oct 2013)
Log Message:
-----------
Reworked Ant build file to use a 'pipeline' macro; added ISA view task.
Modified Paths:
--------------
trunk/src/tools/build/build.xml
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <jam...@us...> - 2013-10-24 16:44:20
|
Revision: 3872
http://sourceforge.net/p/obi/code/3872
Author: jamesaoverton
Date: 2013-10-24 16:44:18 +0000 (Thu, 24 Oct 2013)
Log Message:
-----------
Require Woodstox library for Commenter.
Modified Paths:
--------------
trunk/src/tools/build/ivy.xml
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <jam...@us...> - 2013-10-24 16:43:44
|
Revision: 3871
http://sourceforge.net/p/obi/code/3871
Author: jamesaoverton
Date: 2013-10-24 16:43:40 +0000 (Thu, 24 Oct 2013)
Log Message:
-----------
Tool for listing differences between the axioms in two ontologies.
Added Paths:
-----------
trunk/src/tools/build/src/main/java/obi/Differ.java
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <jam...@us...> - 2013-10-24 16:43:10
|
Revision: 3870
http://sourceforge.net/p/obi/code/3870
Author: jamesaoverton
Date: 2013-10-24 16:43:07 +0000 (Thu, 24 Oct 2013)
Log Message:
-----------
Tool for adding comments to OWL XML.
Added Paths:
-----------
trunk/src/tools/build/src/main/java/obi/Commenter.java
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <jam...@us...> - 2013-10-24 16:42:39
|
Revision: 3869
http://sourceforge.net/p/obi/code/3869
Author: jamesaoverton
Date: 2013-10-24 16:42:36 +0000 (Thu, 24 Oct 2013)
Log Message:
-----------
Better XML output.
Modified Paths:
--------------
trunk/src/tools/build/src/main/java/obi/Metadator.java
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <jam...@us...> - 2013-10-24 16:39:22
|
Revision: 3868
http://sourceforge.net/p/obi/code/3868
Author: jamesaoverton
Date: 2013-10-24 16:39:18 +0000 (Thu, 24 Oct 2013)
Log Message:
-----------
Smarter extraction of core terms.
Modified Paths:
--------------
trunk/src/tools/build/core.txt
trunk/src/tools/build/src/main/java/obi/Extractor.java
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <agb...@us...> - 2013-10-24 13:35:32
|
Revision: 3867
http://sourceforge.net/p/obi/code/3867
Author: agbeltran
Date: 2013-10-24 13:35:28 +0000 (Thu, 24 Oct 2013)
Log Message:
-----------
Adding 'ISA alternative terms'
Modified Paths:
--------------
trunk/src/ontology/branches/obi.owl
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <agb...@us...> - 2013-10-23 14:41:10
|
Revision: 3866
http://sourceforge.net/p/obi/code/3866
Author: agbeltran
Date: 2013-10-23 14:41:08 +0000 (Wed, 23 Oct 2013)
Log Message:
-----------
Tabular file with ISA annotations - to be used with the TermAnnotator to add 'ISA alternative terms'
Added Paths:
-----------
trunk/src/tools/build/src/main/resources/ISAannotations.tsv
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <agb...@us...> - 2013-10-23 14:39:15
|
Revision: 3865
http://sourceforge.net/p/obi/code/3865
Author: agbeltran
Date: 2013-10-23 14:39:14 +0000 (Wed, 23 Oct 2013)
Log Message:
-----------
'ISA alternative term' annotation property
Modified Paths:
--------------
trunk/src/ontology/branches/obi.owl
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <agb...@us...> - 2013-10-23 10:33:10
|
Revision: 3864
http://sourceforge.net/p/obi/code/3864
Author: agbeltran
Date: 2013-10-23 10:33:06 +0000 (Wed, 23 Oct 2013)
Log Message:
-----------
Added 'isa' ant target, to build the ISA view of OBI
Modified Paths:
--------------
trunk/src/tools/build/build.xml
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
