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From: <mb...@us...> - 2012-10-25 16:38:25
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Revision: 3689
http://obi.svn.sourceforge.net/obi/?rev=3689&view=rev
Author: mbrush
Date: 2012-10-25 16:38:19 +0000 (Thu, 25 Oct 2012)
Log Message:
-----------
Adding slides from 10-24-12 CLO/OBI Alignment call
Added Paths:
-----------
trunk/docs/presentations/OBI CL CLO discussion/10-24-12_CLO-OBI_Alignment_Call_2.pptx
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From: <mb...@us...> - 2012-10-03 16:51:00
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Revision: 3687
http://obi.svn.sourceforge.net/obi/?rev=3687&view=rev
Author: mbrush
Date: 2012-10-03 16:50:51 +0000 (Wed, 03 Oct 2012)
Log Message:
-----------
Adding files for CL, CLO, OBI, ReO alignment call
Added Paths:
-----------
trunk/docs/presentations/OBI CL CLO discussion/Aligning_Cells_and_Cultures(OBI,CL,CLO, ReO).xlsx
trunk/docs/presentations/OBI CL CLO discussion/CL_updates_and_ReO_Extensions.pptx
Removed Paths:
-------------
trunk/docs/presentations/OBI CL CLO discussion/3-12-12 OBI Call - Cell Modeling in CL, ReO, OBI.pptx
trunk/docs/presentations/OBI CL CLO discussion/Cells_and_Cultures(OBI,CL,CLO, ReO).xlsx
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From: <jzh...@us...> - 2012-10-03 15:46:12
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Revision: 3686
http://obi.svn.sourceforge.net/obi/?rev=3686&view=rev
Author: jzheng24
Date: 2012-10-03 15:46:03 +0000 (Wed, 03 Oct 2012)
Log Message:
-----------
related files prepared by Matt and Sira
Added Paths:
-----------
trunk/docs/presentations/OBI CL CLO discussion/3-12-12 OBI Call - Cell Modeling in CL, ReO, OBI.pptx
trunk/docs/presentations/OBI CL CLO discussion/CLO_ICBO_OBI.pptx
trunk/docs/presentations/OBI CL CLO discussion/Cells_and_Cultures(OBI,CL,CLO, ReO).xlsx
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From: <jzh...@us...> - 2012-10-01 22:57:54
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Revision: 3685
http://obi.svn.sourceforge.net/obi/?rev=3685&view=rev
Author: jzheng24
Date: 2012-10-01 22:57:47 +0000 (Mon, 01 Oct 2012)
Log Message:
-----------
documents related to Oct 3, 2012 OBI/CL/CLO alignment call
Added Paths:
-----------
trunk/docs/presentations/OBI CL CLO discussion/
trunk/docs/presentations/OBI CL CLO discussion/CLO_slim.owl
trunk/docs/presentations/OBI CL CLO discussion/CL_slim.owl
trunk/docs/presentations/OBI CL CLO discussion/OBI-CL-CLO.ppt
trunk/docs/presentations/OBI CL CLO discussion/OBI_slim.owl
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From: <mb...@us...> - 2012-10-01 15:41:57
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Revision: 3684
http://obi.svn.sourceforge.net/obi/?rev=3684&view=rev
Author: mbrush
Date: 2012-10-01 15:41:46 +0000 (Mon, 01 Oct 2012)
Log Message:
-----------
- updated definition of molecular label role
- updated axioms on detection of molecular label - made defined class, and asserted as child of assay instead of process
- created new class 'molecular tracer labeled material'
- created new class 'addition of molecular tracer' (to be considered a replacement for 'labeling', if definition and axioms are sufficiently different to warrant deprecation and replacement)
Modified Paths:
--------------
trunk/src/ontology/branches/externalDerived.owl
trunk/src/ontology/branches/obi.owl
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From: <mb...@us...> - 2012-09-26 18:41:26
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Revision: 3683
http://obi.svn.sourceforge.net/obi/?rev=3683&view=rev
Author: mbrush
Date: 2012-09-26 18:41:20 +0000 (Wed, 26 Sep 2012)
Log Message:
-----------
- imported 'molecular label role' and 'molecular label' from the Reagent Ontology (into external.owl and externalDerived.owl)
- created new class 'detection of molecular label', to be considered as a replacement for OBI:detection of label (if definition and axioms are sufficiently different to warrant deprecation and replacement)
- ReO 'molecular label role' is to be considered to replace OBI:label role
- added superclass axioms on molecular label, molecular label role, and detection of molecular label
- restrictions created on imported reo classes recorded in external-byHand.owl
- added editor notes to 'label role' and 'detection of label' classes, and changed curation status to requires discussion
Modified Paths:
--------------
trunk/src/ontology/branches/external-byhand.owl
trunk/src/ontology/branches/external.owl
trunk/src/ontology/branches/externalDerived.owl
trunk/src/ontology/branches/obi.owl
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From: <jzh...@us...> - 2012-09-24 18:23:06
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Revision: 3682
http://obi.svn.sourceforge.net/obi/?rev=3682&view=rev
Author: jzheng24
Date: 2012-09-24 18:22:59 +0000 (Mon, 24 Sep 2012)
Log Message:
-----------
check out OBI development version SVN 3670 and will make changes on OBI core terms based on the review posted on the page:
http://obi-ontology.org/page/Core_review
Added Paths:
-----------
trunk/src/ontology/obi-view/obi-core-review/catalog-v001.xml
trunk/src/ontology/obi-view/obi-core-review/external-byhand.owl
trunk/src/ontology/obi-view/obi-core-review/external.owl
trunk/src/ontology/obi-view/obi-core-review/externalDerived.owl
trunk/src/ontology/obi-view/obi-core-review/obi.owl
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From: <jzh...@us...> - 2012-09-17 19:30:17
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Revision: 3681
http://obi.svn.sourceforge.net/obi/?rev=3681&view=rev
Author: jzheng24
Date: 2012-09-17 19:30:11 +0000 (Mon, 17 Sep 2012)
Log Message:
-----------
File used for core terms review
Added Paths:
-----------
trunk/src/ontology/obi-view/obi-core-review/
trunk/src/ontology/obi-view/obi-core-review/obi_core_merged.owl
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From: <jzh...@us...> - 2012-09-17 19:28:41
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Revision: 3680
http://obi.svn.sourceforge.net/obi/?rev=3680&view=rev
Author: jzheng24
Date: 2012-09-17 19:28:35 +0000 (Mon, 17 Sep 2012)
Log Message:
-----------
update to latest OBI-core subset
Modified Paths:
--------------
trunk/src/ontology/obi-view/obi-bfo2/obi_core.owl
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From: <jzh...@us...> - 2012-09-17 19:19:56
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Revision: 3679
http://obi.svn.sourceforge.net/obi/?rev=3679&view=rev
Author: jzheng24
Date: 2012-09-17 19:19:50 +0000 (Mon, 17 Sep 2012)
Log Message:
-----------
details see: http://obi-ontology.org/page/Core
Modified Paths:
--------------
trunk/src/ontology/obi-view/obi-core/CORE_insubset.owl
trunk/src/ontology/obi-view/obi-core/OBI_terms_input.xlsx
trunk/src/ontology/obi-view/obi-core/investigation-core-OBI.jpg
trunk/src/ontology/obi-view/obi-core/obi_core.owl
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From: <jzh...@us...> - 2012-09-10 16:55:55
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Revision: 3678
http://obi.svn.sourceforge.net/obi/?rev=3678&view=rev
Author: jzheng24
Date: 2012-09-10 16:55:49 +0000 (Mon, 10 Sep 2012)
Log Message:
-----------
Added Paths:
-----------
trunk/src/ontology/obi-view/obi-bfo2/TermsMapping-BFO2.xls
trunk/src/ontology/obi-view/obi-bfo2/obi_core.owl
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From: <al...@us...> - 2012-09-10 16:45:09
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Revision: 3677
http://obi.svn.sourceforge.net/obi/?rev=3677&view=rev
Author: alanr
Date: 2012-09-10 16:44:59 +0000 (Mon, 10 Sep 2012)
Log Message:
-----------
Added Paths:
-----------
trunk/src/ontology/obi-view/obi-bfo2/
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From: <jzh...@us...> - 2012-08-10 19:25:09
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Revision: 3676
http://obi.svn.sourceforge.net/obi/?rev=3676&view=rev
Author: jzheng24
Date: 2012-08-10 19:25:03 +0000 (Fri, 10 Aug 2012)
Log Message:
-----------
BFO1.1 or RO mapped to BFO 2.0 Alan version and BFO2.0 Graz draft release version
Added Paths:
-----------
releases/TermsMapping-BFO2.xls
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From: <yon...@us...> - 2012-07-22 08:35:49
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Revision: 3675
http://obi.svn.sourceforge.net/obi/?rev=3675&view=rev
Author: yongqunh
Date: 2012-07-22 08:35:43 +0000 (Sun, 22 Jul 2012)
Log Message:
-----------
More updates of my OBI tutorial presentation file. Oliver
Modified Paths:
--------------
trunk/docs/presentations/OBI tutorial July 2012 ICBO/VO_Development_using_OBI_as_Source_Ontology.ppt
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From: <yon...@us...> - 2012-07-22 07:52:07
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Revision: 3674
http://obi.svn.sourceforge.net/obi/?rev=3674&view=rev
Author: yongqunh
Date: 2012-07-22 07:52:00 +0000 (Sun, 22 Jul 2012)
Log Message:
-----------
Updated ppt file for OBI tutorial. Oliver
Modified Paths:
--------------
trunk/docs/presentations/OBI tutorial July 2012 ICBO/VO_Development_using_OBI_as_Source_Ontology.ppt
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From: <yon...@us...> - 2012-07-21 23:45:21
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Revision: 3673
http://obi.svn.sourceforge.net/obi/?rev=3673&view=rev
Author: yongqunh
Date: 2012-07-21 23:45:15 +0000 (Sat, 21 Jul 2012)
Log Message:
-----------
Add Ontorat files that will be used for the OBI Tutorial demo on July 22, 2012, in ICBO 2012, Graz, Austria. Oliver He
Added Paths:
-----------
trunk/docs/presentations/OBI tutorial July 2012 ICBO/Ontorat/
trunk/docs/presentations/OBI tutorial July 2012 ICBO/Ontorat/eg1_data_file.txt
trunk/docs/presentations/OBI tutorial July 2012 ICBO/Ontorat/eg1_data_file.xlsx
trunk/docs/presentations/OBI tutorial July 2012 ICBO/Ontorat/eg1_output.owl
trunk/docs/presentations/OBI tutorial July 2012 ICBO/Ontorat/eg1_settings.txt
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From: <yon...@us...> - 2012-07-21 23:43:32
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Revision: 3672
http://obi.svn.sourceforge.net/obi/?rev=3672&view=rev
Author: yongqunh
Date: 2012-07-21 23:43:26 +0000 (Sat, 21 Jul 2012)
Log Message:
-----------
Added OntoFox files for tomorrow's OBI tutorial demo in ICBO 2012, Graz, Austria. Oliver
Added Paths:
-----------
trunk/docs/presentations/OBI tutorial July 2012 ICBO/OntoFox/
trunk/docs/presentations/OBI tutorial July 2012 ICBO/OntoFox/NCBITaxon_import.owl
trunk/docs/presentations/OBI tutorial July 2012 ICBO/OntoFox/NCBITaxon_import_input.txt
trunk/docs/presentations/OBI tutorial July 2012 ICBO/OntoFox/OBI_NCBITaxon_Merged.owl
trunk/docs/presentations/OBI tutorial July 2012 ICBO/OntoFox/OBI_import.owl
trunk/docs/presentations/OBI tutorial July 2012 ICBO/OntoFox/OBI_import_input.txt
trunk/docs/presentations/OBI tutorial July 2012 ICBO/OntoFox/catalog-v001.xml
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From: <yon...@us...> - 2012-07-20 22:32:38
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Revision: 3671
http://obi.svn.sourceforge.net/obi/?rev=3671&view=rev
Author: yongqunh
Date: 2012-07-20 22:32:32 +0000 (Fri, 20 Jul 2012)
Log Message:
-----------
My OBI tutorial presentation in ICBO 2012. Oliver
Added Paths:
-----------
trunk/docs/presentations/OBI tutorial July 2012 ICBO/VO_Development_using_OBI_as_Source_Ontology.ppt
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From: <bjo...@us...> - 2012-07-19 21:00:54
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Revision: 3670
http://obi.svn.sourceforge.net/obi/?rev=3670&view=rev
Author: bjoernpeters
Date: 2012-07-19 21:00:48 +0000 (Thu, 19 Jul 2012)
Log Message:
-----------
Modified Paths:
--------------
trunk/src/ontology/branches/obi.owl
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From: <sto...@us...> - 2012-07-19 17:05:54
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Revision: 3669
http://obi.svn.sourceforge.net/obi/?rev=3669&view=rev
Author: stoeckert
Date: 2012-07-19 17:05:48 +0000 (Thu, 19 Jul 2012)
Log Message:
-----------
first part of tutorial
Added Paths:
-----------
trunk/docs/presentations/OBI tutorial July 2012 ICBO/IntroductionToOBI.pptx
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From: <jzh...@us...> - 2012-07-19 16:12:53
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Revision: 3668
http://obi.svn.sourceforge.net/obi/?rev=3668&view=rev
Author: jzheng24
Date: 2012-07-19 16:12:43 +0000 (Thu, 19 Jul 2012)
Log Message:
-----------
Removed Paths:
-------------
trunk/docs/presentations/OBI tutorial July 2012 ICBO/OBI_Representation Of Biomedical Investigations Using OBI .ppt
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From: <jzh...@us...> - 2012-07-19 16:11:14
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Revision: 3667
http://obi.svn.sourceforge.net/obi/?rev=3667&view=rev
Author: jzheng24
Date: 2012-07-19 16:11:05 +0000 (Thu, 19 Jul 2012)
Log Message:
-----------
rename the file
Added Paths:
-----------
trunk/docs/presentations/OBI tutorial July 2012 ICBO/Representation Of Biomedical Investigations Using OBI .ppt
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From: <jzh...@us...> - 2012-07-19 16:09:39
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Revision: 3666
http://obi.svn.sourceforge.net/obi/?rev=3666&view=rev
Author: jzheng24
Date: 2012-07-19 16:09:33 +0000 (Thu, 19 Jul 2012)
Log Message:
-----------
Removed Paths:
-------------
trunk/docs/presentations/OBI tutorial July 2012 ICBO/OBI_Jie.ppt
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From: <jzh...@us...> - 2012-07-19 16:08:51
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Revision: 3665
http://obi.svn.sourceforge.net/obi/?rev=3665&view=rev
Author: jzheng24
Date: 2012-07-19 16:08:45 +0000 (Thu, 19 Jul 2012)
Log Message:
-----------
slides for OBI tutorial: "Representation Of Biomedical Investigations Using OBI"
Added Paths:
-----------
trunk/docs/presentations/OBI tutorial July 2012 ICBO/OBI_Representation Of Biomedical Investigations Using OBI .ppt
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From: <jzh...@us...> - 2012-07-18 01:11:21
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Revision: 3664
http://obi.svn.sourceforge.net/obi/?rev=3664&view=rev
Author: jzheng24
Date: 2012-07-18 01:11:15 +0000 (Wed, 18 Jul 2012)
Log Message:
-----------
Add Jie's slides and related files
Added Paths:
-----------
trunk/docs/presentations/OBI tutorial July 2012 ICBO/OBI_Jie.ppt
trunk/docs/presentations/OBI tutorial July 2012 ICBO/Ontodog/
trunk/docs/presentations/OBI tutorial July 2012 ICBO/Ontodog/OBI_core_input_ch.xls
trunk/docs/presentations/OBI tutorial July 2012 ICBO/Ontodog/OBI_core_input_de.xls
trunk/docs/presentations/OBI tutorial July 2012 ICBO/Ontodog/Output files/
trunk/docs/presentations/OBI tutorial July 2012 ICBO/Ontodog/Output files/core_ch_label.owl
trunk/docs/presentations/OBI tutorial July 2012 ICBO/Ontodog/Output files/core_de_label.owl
trunk/docs/presentations/OBI tutorial July 2012 ICBO/Ontodog/Output files/core_insubset.owl
trunk/docs/presentations/OBI tutorial July 2012 ICBO/Ontodog/Output files/obi_core.owl
trunk/docs/presentations/OBI tutorial July 2012 ICBO/Ontodog/Output files MOD/
trunk/docs/presentations/OBI tutorial July 2012 ICBO/Ontodog/Output files MOD/core_ch_label.owl
trunk/docs/presentations/OBI tutorial July 2012 ICBO/Ontodog/Output files MOD/core_de_label.owl
trunk/docs/presentations/OBI tutorial July 2012 ICBO/Ontodog/Output files MOD/obi_core_mod.owl
trunk/docs/presentations/OBI tutorial July 2012 ICBO/Ontodog/example.owl
trunk/docs/presentations/OBI tutorial July 2012 ICBO/patient/
trunk/docs/presentations/OBI tutorial July 2012 ICBO/patient/LIMS_patient.owl
trunk/docs/presentations/OBI tutorial July 2012 ICBO/patient/OBITerms_patient.xls
trunk/docs/presentations/OBI tutorial July 2012 ICBO/patient/obi_patient.owl
trunk/docs/presentations/OBI tutorial July 2012 ICBO/patient/patient_data.xls
trunk/docs/presentations/OBI tutorial July 2012 ICBO/patient/queries.txt
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