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From: <dan...@us...> - 2007-08-17 16:44:09
|
Revision: 135
http://obi.svn.sourceforge.net/obi/?rev=135&view=rev
Author: daniel_schober
Date: 2007-08-17 09:44:11 -0700 (Fri, 17 Aug 2007)
Log Message:
-----------
some minor orthographic and typographic changes were made to make this file compliant to the naming conventions
Composite Change Annotation Added: preferred_term: 'parallel_group_design' to class: OBI_500006 schober 08/17/2007 17:37:21 BST
Annotation Removed Annotation Removed: rdfs:label from class: OBI_500006 schober 08/17/2007 17:37:59 BST
Composite Change Annotation Added: alternative_term: '' to class: OBI_500006 schober 08/17/2007 17:37:59 BST
Annotation Added Annotation Added: rdfs:label: '~#en parallel_group_design' to class: OBI_500006 schober 08/17/2007 17:37:59 BST
Modified Paths:
--------------
branchDevelopment/trunk/Plan.owl
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <al...@us...> - 2007-08-17 16:33:03
|
Revision: 134
http://obi.svn.sourceforge.net/obi/?rev=134&view=rev
Author: alanr
Date: 2007-08-17 09:33:04 -0700 (Fri, 17 Aug 2007)
Log Message:
-----------
start of script to find and fix class names without OBI ids
Added Paths:
-----------
branchDevelopment/trunk/gather-class-uris.pl
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <dan...@us...> - 2007-08-17 16:27:55
|
Revision: 133
http://obi.svn.sourceforge.net/obi/?rev=133&view=rev
Author: daniel_schober
Date: 2007-08-17 09:27:56 -0700 (Fri, 17 Aug 2007)
Log Message:
-----------
DS: This branch was made compliant to the naming conventions
NC examples:
Library , OBI_1000003 was renamed screening_library, library was made alternative tern.
Whole mount, OBI_1000049 was renamed whole_mount_preparation
NaturalBiomaterialEntity was renamed natural_biomaterial (removing tabooword)
Plasma was renamed blood_plasma
PBS to PBS_buffer
Here the changeTab report:
Composite Change Create subclass of type owl:Class -- Apply to: Class_1 schober 08/14/2007 16:24:44 BST
Superclass Added Superclass Added: flow_cytometer_analyzer (added to: flow_cytometer_sorter) schober 08/14/2007 16:25:28 BST
Composite Change Annotation Added: rdfs:label: '' to class: OBI_400134 schober 08/14/2007 16:25:28 BST
Subclass Added Subclass Added: OBI_400134 (added to: flow_cytometer_analyzer) schober 08/14/2007 16:25:28 BST
Composite Change Remove superclass schober 08/14/2007 16:25:28 BST
Superclass Added Superclass Added: instrument (added to: flow_cytometer_analyzer) schober 08/14/2007 16:26:20 BST
Subclass Added Subclass Added: OBI_400008 (added to: instrument) schober 08/14/2007 16:26:20 BST
Composite Change Remove superclass schober 08/14/2007 16:26:20 BST
Composite Change Delete class schober 08/14/2007 16:27:35 BST
Superclass Added Superclass Added: ?flow_cytometer (added to: flow_cytometer_analyzer) schober 08/14/2007 16:28:54 BST
Subclass Added Subclass Added: OBI_400008 (added to: ?flow_cytometer) schober 08/14/2007 16:28:54 BST
Composite Change Remove superclass schober 08/14/2007 16:28:54 BST
Composite Change Create subclass of type owl:Class -- Apply to: Class_2 schober 08/14/2007 16:29:03 BST
Composite Change Create subclass of type owl:Class -- Apply to: Class_3 schober 08/14/2007 16:29:54 BST
Composite Change Delete class schober 08/14/2007 16:29:59 BST
Composite Change Create subclass of type owl:Class -- Apply to: Class_4 schober 08/14/2007 16:30:03 BST
Superclass Added Superclass Added: cytometer (added to: image_cytometer) schober 08/14/2007 16:30:19 BST
Composite Change Annotation Added: rdfs:label: '' to class: OBI_400137 schober 08/14/2007 16:30:19 BST
Subclass Added Subclass Added: OBI_400135 (added to: cytometer) schober 08/14/2007 16:30:19 BST
Composite Change Remove superclass schober 08/14/2007 16:30:19 BST
Superclass Added Superclass Added: cytometer (added to: ?flow_cytometer) schober 08/14/2007 16:30:25 BST
Subclass Added Subclass Added: OBI_400044 (added to: cytometer) schober 08/14/2007 16:30:25 BST
Composite Change Remove superclass schober 08/14/2007 16:30:25 BST
Composite Change Annotation Added: editor_note: '' to class: OBI_48 schober 08/14/2007 16:38:37 BST
Composite Change Annotation Added: rdfs:label: '~#en liquid_chromatography_instrument' to class: OBI_48 schober 08/14/2007 16:42:37 BST
Composite Change Annotation Added: rdfs:label: 'polystyrene_tube' to class: OBI_10000004 schober 08/14/2007 16:45:04 BST
Superclass Added Superclass Added: fiat_object_part (added to: InstrumentAndPart_temporary) schober 08/14/2007 16:51:28 BST
Composite Change Annotation Added: rdfs:label: 'supernatant_collection_system_harvesting_frame' to class: OBI_10000008 schober 08/14/2007 16:51:28 BST
Subclass Added Subclass Added: OBI_400133 (added to: fiat_object_part) schober 08/14/2007 16:51:28 BST
Composite Change Remove superclass schober 08/14/2007 16:51:28 BST
Superclass Added Superclass Added: artefact_object (added to: InstrumentAndPart_temporary) schober 08/14/2007 16:53:29 BST
Subclass Added Subclass Added: OBI_400133 (added to: artefact_object) schober 08/14/2007 16:53:29 BST
Composite Change Remove superclass schober 08/14/2007 16:53:29 BST
Composite Change Create subclass of type owl:Class -- Apply to: Class_5 schober 08/14/2007 17:23:53 BST
Composite Change Annotation Added: rdfs:label: '' to class: OBI_400138 schober 08/14/2007 17:25:24 BST
Superclass Added Superclass Added: _move_to_biomaterial_branch (added to: ?sheath_fluid) schober 08/14/2007 17:25:50 BST
Composite Change Annotation Added: editor_note: 'DS: Is a fluid an instrument? Or even part of an instrument ?
All: All fluids and the propellant/ gas should be submitted to the material branch. or role?' to class: OBI_400090 schober 08/14/2007 17:25:50 BST
Subclass Added Subclass Added: OBI_400092 (added to: _move_to_biomaterial_branch) schober 08/14/2007 17:25:50 BST
Composite Change Remove superclass schober 08/14/2007 17:25:50 BST
Superclass Added Superclass Added: _move_to_biomaterial_branch (added to: ?sample_fluid) schober 08/14/2007 17:26:45 BST
Subclass Added Subclass Added: OBI_400090 (added to: _move_to_biomaterial_branch) schober 08/14/2007 17:26:45 BST
Composite Change Remove superclass schober 08/14/2007 17:26:45 BST
Superclass Added Superclass Added: _move_to_biomaterial_branch (added to: ?sheath_propellent) schober 08/14/2007 17:26:48 BST
Subclass Added Subclass Added: OBI_400093 (added to: _move_to_biomaterial_branch) schober 08/14/2007 17:26:48 BST
Composite Change Remove superclass schober 08/14/2007 17:26:48 BST
Annotation Added Annotation Added: editor_note: '' to class: OBI_400072 schober 08/17/2007 14:00:20 BST
Composite Change Annotation Modified: annotation editor_note for class: OBI_40 set to: [syn: mobile_phase] schober 08/17/2007 14:00:20 BST
Composite Change Annotation Added: preferred_term: '?manufacturer_of_flow_cytometer' to class: OBI_400072 schober 08/17/2007 14:03:00 BST
Composite Change Annotation Added: editor_note: 'DS: I guess this must go under Manufacturer. I also would opt for flow_cytometer_manufactrer insted (keep one convention consistently). At the end I am sure this will be an unnamed class or just a property of flow_cytometer.' to class: OBI_400072 schober 08/17/2007 14:36:17 BST
Composite Change Annotation Added: rdfs:label: '~#en ?manufacturer_of_flow_cytometer' to class: OBI_400072 schober 08/17/2007 14:36:38 BST
Composite Change Annotation Added: preferred_term: 'avalanche_photodiode' to class: OBI_400011 schober 08/17/2007 14:36:52 BST
Composite Change Annotation Added: rdfs:label: '~#en avalanche_photodiode' to class: OBI_400011 schober 08/17/2007 14:37:39 BST
Composite Change Annotation Added: preferred_term: 'voltage_amplifier' to class: OBI_400101 schober 08/17/2007 14:38:03 BST
Superclass Added Superclass Added: _move_to_biomaterial_branch (added to: ?column_chromatography_solvent) schober 08/17/2007 14:40:16 BST
Composite Change Annotation Added: rdfs:label: '~#en voltage_amplifier' to class: OBI_400101 schober 08/17/2007 14:40:16 BST
Subclass Added Subclass Added: OBI_40 (added to: _move_to_biomaterial_branch) schober 08/17/2007 14:40:16 BST
Composite Change Remove superclass schober 08/17/2007 14:40:16 BST
Superclass Added Superclass Added: _collected_relations (added to: ?manufacturer_of_flow_cytometer) schober 08/17/2007 14:43:13 BST
Subclass Added Subclass Added: OBI_400072 (added to: _collected_relations) schober 08/17/2007 14:43:13 BST
Composite Change Remove superclass schober 08/17/2007 14:43:14 BST
Composite Change Annotation Added: owl:versionInfo: 'TODO: ' to class: OBI_10000002 schober 08/17/2007 14:47:05 BST
Composite Change Annotation Added: editor_note: '' to class: OBI_10000002 schober 08/17/2007 14:59:50 BST
Composite Change Annotation Added: editor_note: '' to class: OBI_400120 schober 08/17/2007 15:21:18 BST
Superclass Added Superclass Added: labware (added to: waterbath) schober 08/17/2007 15:21:22 BST
Composite Change Annotation Added: rdfs:label: '?filtration_instrument' to class: OBI_10000007 schober 08/17/2007 15:21:22 BST
Subclass Added Subclass Added: OBI_400120 (added to: labware) schober 08/17/2007 15:21:22 BST
Composite Change Remove superclass schober 08/17/2007 15:21:22 BST
Annotation Removed Annotation Removed: editor_note from class: waterbath schober 08/17/2007 15:21:49 BST
Annotation Added Annotation Added: editor_note: 'DS: Is a waterbath labware or an instrument?' to class: OBI_400120 schober 08/17/2007 15:21:49 BST
Name Changed Name change from 'toBeDiscussed' to 'biomaterial_temporary' schober 08/17/2007 16:45:46 BST
Name Changed Name change from 'ExperimentalBiomateralEntity' to 'experimental_biomateral_entity' schober 08/17/2007 16:57:07 BST
Composite Change Annotation Added: editor_note: '' to class: experimental_biomateral_entity schober 08/17/2007 17:00:28 BST
Composite Change Annotation Added: preferred_term: 'cell_culture' to class: OBI_1000000 schober 08/17/2007 17:00:34 BST
Composite Change Annotation Added: rdfs:label: '~#en cell_culture' to class: OBI_1000000 schober 08/17/2007 17:01:10 BST
Composite Change Annotation Added: preferred_term: 'synthetic_polypeptide' to class: OBI_1000015 schober 08/17/2007 17:01:20 BST
Composite Change Annotation Added: rdfs:label: '~#en synthetic_polypeptide' to class: OBI_1000015 schober 08/17/2007 17:01:43 BST
Composite Change Annotation Added: preferred_term: 'bronchial_aveolar_lavage' to class: OBI_1000020 schober 08/17/2007 17:01:53 BST
Composite Change Annotation Added: rdfs:label: '~#en bronchial_aveolar_lavage' to class: OBI_1000020 schober 08/17/2007 17:02:04 BST
Composite Change Annotation Added: alternative_term: '' to class: OBI_1000020 schober 08/17/2007 17:02:27 BST
Composite Change Annotation Added: preferred_term: 'cDNA_library' to class: OBI_1000021 schober 08/17/2007 17:02:46 BST
Composite Change Annotation Added: rdfs:label: '~#en cDNA_library' to class: OBI_1000021 schober 08/17/2007 17:03:48 BST
Composite Change Annotation Added: preferred_term: 'phage_display_library' to class: OBI_1000029 schober 08/17/2007 17:04:02 BST
Composite Change Annotation Added: rdfs:label: '~#en phage_display_library' to class: OBI_1000029 schober 08/17/2007 17:04:16 BST
Composite Change Annotation Added: alternative_term: '' to class: OBI_1000029 schober 08/17/2007 17:05:19 BST
Composite Change Annotation Added: preferred_term: 'screening_library' to class: OBI_1000003 schober 08/17/2007 17:05:31 BST
Composite Change Annotation Added: rdfs:label: '~#en screening_library' to class: OBI_1000003 schober 08/17/2007 17:07:22 BST
Annotation Added Annotation Added: alternative_term: '' to class: OBI_1000049 schober 08/17/2007 17:08:01 BST
Composite Change Annotation Added: editor_note: 'original term: protein fragment split into synthetic polypeptide and fragment derived from protein
DS: Is this synthetic an oxymoron to the biomaterial?' to class: OBI_1000015 schober 08/17/2007 17:08:01 BST
Composite Change Annotation Added: example_of_usage: 'whole_mount' to class: OBI_1000049 schober 08/17/2007 17:08:06 BST
Composite Change Annotation Added: alternative_term: 'whole_mount' to class: OBI_1000049 schober 08/17/2007 17:08:18 BST
Composite Change Annotation Added: preferred_term: 'whole_mount_preparation' to class: OBI_1000049 schober 08/17/2007 17:08:31 BST
Composite Change Annotation Added: example_of_usage: 'whole_mount_preparation' to class: OBI_1000049 schober 08/17/2007 17:08:50 BST
Name Changed Name change from 'geneticInformationContent' to 'genetic_information_content' schober 08/17/2007 17:10:13 BST
Composite Change Annotation Added: rdfs:label: '~#en whole_mount_preparation' to class: OBI_1000049 schober 08/17/2007 17:10:13 BST
Composite Change Annotation Added: editor_note: '' to class: genetic_information_content schober 08/17/2007 17:11:14 BST
Annotation Added Annotation Added: editor_note: '' to class: NaturalBiomaterialEntity schober 08/17/2007 17:11:43 BST
Composite Change Annotation Modified: annotation editor_note for class: experimental_biomateral_entity set to: [DS: what is this? Does the 'experimental' here refer to the biomaterials role in an experiment? Or does this refer to the metadata level, e.g. indicating this class' experimental status?, ] schober 08/17/2007 17:11:43 BST
Name Changed Name change from 'NaturalBiomaterialEntity' to 'natural_biomaterial' schober 08/17/2007 17:12:17 BST
Composite Change Annotation Added: editor_note: 'DS: Assign metadata and ID' to class: natural_biomaterial schober 08/17/2007 17:13:12 BST
Composite Change Annotation Added: preferred_term: 'unicellular_organism' to class: OBI_1000007 schober 08/17/2007 17:13:25 BST
Superclass Added Superclass Added: organism (added to: chimera) schober 08/17/2007 17:14:10 BST
Composite Change Annotation Added: rdfs:label: '~#en unicellular_organism' to class: OBI_1000007 schober 08/17/2007 17:14:10 BST
Subclass Added Subclass Added: chimera (added to: organism) schober 08/17/2007 17:14:10 BST
Composite Change Remove superclass schober 08/17/2007 17:14:11 BST
Composite Change Annotation Added: preferred_term: 'blood_plasma' to class: OBI_1000017 schober 08/17/2007 17:14:44 BST
Composite Change Annotation Added: rdfs:label: '~#en blood_plasma' to class: OBI_1000017 schober 08/17/2007 17:14:51 BST
Composite Change Annotation Added: alternative_term: '' to class: OBI_1000017 schober 08/17/2007 17:16:29 BST
Composite Change Annotation Added: preferred_term: 'cell_derived_from_multicellular_organism' to class: OBI_1000001 schober 08/17/2007 17:16:35 BST
Composite Change Annotation Added: rdfs:label: '~#en cell_derived_from_multicellular_organism' to class: OBI_1000001 schober 08/17/2007 17:16:45 BST
Composite Change Annotation Added: preferred_term: 'immortal_cell' to class: OBI_1000002 schober 08/17/2007 17:16:49 BST
Composite Change Annotation Added: rdfs:label: '~#en immortal_cell' to class: OBI_1000002 schober 08/17/2007 17:17:15 BST
Composite Change Annotation Added: preferred_term: 'artificially_engineered_biomaterial' to class: OBI_1000012 schober 08/17/2007 17:17:59 BST
Composite Change Annotation Added: editor_note: 'added as hierarchy term
DS: I guess this is an alternative term for object!' to class: OBI_1000005 schober 08/17/2007 17:18:18 BST
Composite Change Annotation Added: rdfs:label: '~#en sf' to class: OBI_1000012 schober 08/17/2007 17:18:53 BST
Composite Change Annotation Added: preferred_term: 'fragment_derived_from_protein' to class: OBI_1000014 schober 08/17/2007 17:18:56 BST
Composite Change Annotation Added: rdfs:label: '~#en fragment_derived_from_protein' to class: OBI_1000014 schober 08/17/2007 17:19:28 BST
Composite Change Annotation Added: preferred_term: 'liquid_chemical_solution' to class: OBI_1000004 schober 08/17/2007 17:19:32 BST
Composite Change Annotation Added: rdfs:label: '~#en liquid_chemical_solution' to class: OBI_1000004 schober 08/17/2007 17:19:55 BST
Composite Change Annotation Added: preferred_term: 'PBS_buffer' to class: OBI_1000041 schober 08/17/2007 17:20:01 BST
Composite Change Annotation Added: rdfs:label: '~#en PBS_buffer' to class: OBI_1000041 schober 08/17/2007 17:21:50 BST
Composite Change Annotation Added: editor_note: 'huh? Status does not sound like a material
DS: exactly. Push to relevant branch.' to class: OBI_1000040 schober 08/17/2007 17:22:03 BST
Composite Change Annotation Added: preferred_term: '?organism_status' to class: OBI_1000040 schober 08/17/2007 17:22:13 BST
Composite Change Annotation Added: rdfs:label: '~#en ?organism_status' to class: OBI_1000040 schober 08/17/2007 17:22:55 BST
Composite Change Annotation Added: rdfs:label: '~#en ChEBI_object' to class: OBI_336 schober 08/17/2007 17:23:09 BST
Composite Change Annotation Added: rdfs:label: 'Triton_X-100' to class: OBI_10000006 schober 08/17/2007 17:23:20 BST
Superclass Added Superclass Added: biomaterial_temporary (added to: ChEBI_object) schober 08/17/2007 17:24:09 BST
Composite Change Annotation Added: rdfs:label: '?chromium_51' to class: OBI_10000009 schober 08/17/2007 17:24:09 BST
Subclass Added Subclass Added: OBI_336 (added to: biomaterial_temporary) schober 08/17/2007 17:24:09 BST
Composite Change Remove superclass schober 08/17/2007 17:24:09 BST
Modified Paths:
--------------
branchDevelopment/trunk/Biomaterial.owl
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <dan...@us...> - 2007-08-17 14:27:02
|
Revision: 132
http://obi.svn.sourceforge.net/obi/?rev=132&view=rev
Author: daniel_schober
Date: 2007-08-17 07:27:01 -0700 (Fri, 17 Aug 2007)
Log Message:
-----------
Branch was checked to conform to naming conventions.
Some class positions were altered and some orthographic glitches rectified.
Here the complete change track:
Composite Change Create subclass of type owl:Class -- Apply to: Class_1 schober 08/14/2007 16:24:44 BST
Superclass Added Superclass Added: flow_cytometer_analyzer (added to: flow_cytometer_sorter) schober 08/14/2007 16:25:28 BST
Composite Change Annotation Added: rdfs:label: '' to class: OBI_400134 schober 08/14/2007 16:25:28 BST
Subclass Added Subclass Added: OBI_400134 (added to: flow_cytometer_analyzer) schober 08/14/2007 16:25:28 BST
Composite Change Remove superclass schober 08/14/2007 16:25:28 BST
Superclass Added Superclass Added: instrument (added to: flow_cytometer_analyzer) schober 08/14/2007 16:26:20 BST
Subclass Added Subclass Added: OBI_400008 (added to: instrument) schober 08/14/2007 16:26:20 BST
Composite Change Remove superclass schober 08/14/2007 16:26:20 BST
Composite Change Delete class schober 08/14/2007 16:27:35 BST
Superclass Added Superclass Added: ?flow_cytometer (added to: flow_cytometer_analyzer) schober 08/14/2007 16:28:54 BST
Subclass Added Subclass Added: OBI_400008 (added to: ?flow_cytometer) schober 08/14/2007 16:28:54 BST
Composite Change Remove superclass schober 08/14/2007 16:28:54 BST
Composite Change Create subclass of type owl:Class -- Apply to: Class_2 schober 08/14/2007 16:29:03 BST
Composite Change Create subclass of type owl:Class -- Apply to: Class_3 schober 08/14/2007 16:29:54 BST
Composite Change Delete class schober 08/14/2007 16:29:59 BST
Composite Change Create subclass of type owl:Class -- Apply to: Class_4 schober 08/14/2007 16:30:03 BST
Superclass Added Superclass Added: cytometer (added to: image_cytometer) schober 08/14/2007 16:30:19 BST
Composite Change Annotation Added: rdfs:label: '' to class: OBI_400137 schober 08/14/2007 16:30:19 BST
Subclass Added Subclass Added: OBI_400135 (added to: cytometer) schober 08/14/2007 16:30:19 BST
Composite Change Remove superclass schober 08/14/2007 16:30:19 BST
Superclass Added Superclass Added: cytometer (added to: ?flow_cytometer) schober 08/14/2007 16:30:25 BST
Subclass Added Subclass Added: OBI_400044 (added to: cytometer) schober 08/14/2007 16:30:25 BST
Composite Change Remove superclass schober 08/14/2007 16:30:25 BST
Composite Change Annotation Added: editor_note: '' to class: OBI_48 schober 08/14/2007 16:38:37 BST
Composite Change Annotation Added: rdfs:label: '~#en liquid_chromatography_instrument' to class: OBI_48 schober 08/14/2007 16:42:37 BST
Composite Change Annotation Added: rdfs:label: 'polystyrene_tube' to class: OBI_10000004 schober 08/14/2007 16:45:04 BST
Superclass Added Superclass Added: fiat_object_part (added to: InstrumentAndPart_temporary) schober 08/14/2007 16:51:28 BST
Composite Change Annotation Added: rdfs:label: 'supernatant_collection_system_harvesting_frame' to class: OBI_10000008 schober 08/14/2007 16:51:28 BST
Subclass Added Subclass Added: OBI_400133 (added to: fiat_object_part) schober 08/14/2007 16:51:28 BST
Composite Change Remove superclass schober 08/14/2007 16:51:28 BST
Superclass Added Superclass Added: artefact_object (added to: InstrumentAndPart_temporary) schober 08/14/2007 16:53:29 BST
Subclass Added Subclass Added: OBI_400133 (added to: artefact_object) schober 08/14/2007 16:53:29 BST
Composite Change Remove superclass schober 08/14/2007 16:53:29 BST
Composite Change Create subclass of type owl:Class -- Apply to: Class_5 schober 08/14/2007 17:23:53 BST
Composite Change Annotation Added: rdfs:label: '' to class: OBI_400138 schober 08/14/2007 17:25:24 BST
Superclass Added Superclass Added: _move_to_biomaterial_branch (added to: ?sheath_fluid) schober 08/14/2007 17:25:50 BST
Composite Change Annotation Added: editor_note: 'DS: Is a fluid an instrument? Or even part of an instrument ?
All: All fluids and the propellant/ gas should be submitted to the material branch. or role?' to class: OBI_400090 schober 08/14/2007 17:25:50 BST
Subclass Added Subclass Added: OBI_400092 (added to: _move_to_biomaterial_branch) schober 08/14/2007 17:25:50 BST
Composite Change Remove superclass schober 08/14/2007 17:25:50 BST
Superclass Added Superclass Added: _move_to_biomaterial_branch (added to: ?sample_fluid) schober 08/14/2007 17:26:45 BST
Subclass Added Subclass Added: OBI_400090 (added to: _move_to_biomaterial_branch) schober 08/14/2007 17:26:45 BST
Composite Change Remove superclass schober 08/14/2007 17:26:45 BST
Superclass Added Superclass Added: _move_to_biomaterial_branch (added to: ?sheath_propellent) schober 08/14/2007 17:26:48 BST
Subclass Added Subclass Added: OBI_400093 (added to: _move_to_biomaterial_branch) schober 08/14/2007 17:26:48 BST
Composite Change Remove superclass schober 08/14/2007 17:26:48 BST
Annotation Added Annotation Added: editor_note: '' to class: OBI_400072 schober 08/17/2007 14:00:20 BST
Composite Change Annotation Modified: annotation editor_note for class: OBI_40 set to: [syn: mobile_phase] schober 08/17/2007 14:00:20 BST
Composite Change Annotation Added: preferred_term: '?manufacturer_of_flow_cytometer' to class: OBI_400072 schober 08/17/2007 14:03:00 BST
Composite Change Annotation Added: editor_note: 'DS: I guess this must go under Manufacturer. I also would opt for flow_cytometer_manufactrer insted (keep one convention consistently). At the end I am sure this will be an unnamed class or just a property of flow_cytometer.' to class: OBI_400072 schober 08/17/2007 14:36:17 BST
Composite Change Annotation Added: rdfs:label: '~#en ?manufacturer_of_flow_cytometer' to class: OBI_400072 schober 08/17/2007 14:36:38 BST
Composite Change Annotation Added: preferred_term: 'avalanche_photodiode' to class: OBI_400011 schober 08/17/2007 14:36:52 BST
Composite Change Annotation Added: rdfs:label: '~#en avalanche_photodiode' to class: OBI_400011 schober 08/17/2007 14:37:39 BST
Composite Change Annotation Added: preferred_term: 'voltage_amplifier' to class: OBI_400101 schober 08/17/2007 14:38:03 BST
Superclass Added Superclass Added: _move_to_biomaterial_branch (added to: ?column_chromatography_solvent) schober 08/17/2007 14:40:16 BST
Composite Change Annotation Added: rdfs:label: '~#en voltage_amplifier' to class: OBI_400101 schober 08/17/2007 14:40:16 BST
Subclass Added Subclass Added: OBI_40 (added to: _move_to_biomaterial_branch) schober 08/17/2007 14:40:16 BST
Composite Change Remove superclass schober 08/17/2007 14:40:16 BST
Superclass Added Superclass Added: _collected_relations (added to: ?manufacturer_of_flow_cytometer) schober 08/17/2007 14:43:13 BST
Subclass Added Subclass Added: OBI_400072 (added to: _collected_relations) schober 08/17/2007 14:43:13 BST
Composite Change Remove superclass schober 08/17/2007 14:43:14 BST
Composite Change Annotation Added: owl:versionInfo: 'TODO: ' to class: OBI_10000002 schober 08/17/2007 14:47:05 BST
Composite Change Annotation Added: editor_note: '' to class: OBI_10000002 schober 08/17/2007 14:59:50 BST
Composite Change Annotation Added: editor_note: '' to class: OBI_400120 schober 08/17/2007 15:21:18 BST
Superclass Added Superclass Added: labware (added to: waterbath) schober 08/17/2007 15:21:22 BST
Composite Change Annotation Added: rdfs:label: '?filtration_instrument' to class: OBI_10000007 schober 08/17/2007 15:21:22 BST
Subclass Added Subclass Added: OBI_400120 (added to: labware) schober 08/17/2007 15:21:22 BST
Composite Change Remove superclass schober 08/17/2007 15:21:22 BST
Annotation Removed Annotation Removed: editor_note from class: waterbath schober 08/17/2007 15:21:49 BST
Annotation Added Annotation Added: editor_note: 'DS: Is a waterbath labware or an instrument?' to class: OBI_400120 schober 08/17/2007 15:21:49 BST
Modified Paths:
--------------
branchDevelopment/trunk/InstrumentAndPart.owl
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From: <all...@us...> - 2007-08-15 11:55:13
|
Revision: 131
http://obi.svn.sourceforge.net/obi/?rev=131&view=rev
Author: allysonlister
Date: 2007-08-15 04:55:08 -0700 (Wed, 15 Aug 2007)
Log Message:
-----------
Added the commands to copy the include/ dir as well as the htdocs/ dir
Modified Paths:
--------------
web/trunk/Maintenance.txt
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From: <all...@us...> - 2007-08-15 11:42:27
|
Revision: 130
http://obi.svn.sourceforge.net/obi/?rev=130&view=rev
Author: allysonlister
Date: 2007-08-15 04:42:30 -0700 (Wed, 15 Aug 2007)
Log Message:
-----------
Added the notes dir. which until now has not been in subversion.
Added Paths:
-----------
web/trunk/htdocs/notes/
web/trunk/htdocs/notes/coordinators/
web/trunk/htdocs/notes/coordinators/13DEC2006.txt
web/trunk/htdocs/notes/coordinators/FuGO_notes_coordCall_140606.txt
web/trunk/htdocs/notes/coordinators/fugo_notes_coordCall-051106.txt
web/trunk/htdocs/notes/coordinators/fugo_summary_coordCall-011106.doc
web/trunk/htdocs/notes/coordinators/fugo_summary_coordCall-032706.doc
web/trunk/htdocs/notes/coordinators/fugo_summary_coordCall-121405.doc
web/trunk/htdocs/notes/developers/
web/trunk/htdocs/notes/developers/200511/
web/trunk/htdocs/notes/developers/200511/fugo_notes-110905.txt
web/trunk/htdocs/notes/developers/200511/fugo_notes-112305.doc
web/trunk/htdocs/notes/developers/200511/fugo_notes-113005.txt
web/trunk/htdocs/notes/developers/200512/
web/trunk/htdocs/notes/developers/200512/fugo_notes-120705.txt
web/trunk/htdocs/notes/developers/200512/fugo_notes-122105.txt
web/trunk/htdocs/notes/developers/200512/fugo_summary-122105.doc
web/trunk/htdocs/notes/developers/200601/
web/trunk/htdocs/notes/developers/200601/fugo_notes-011806.txt
web/trunk/htdocs/notes/developers/200601/fugo_notes_010406.txt
web/trunk/htdocs/notes/developers/200601/fugo_notes_summary-012506.txt
web/trunk/htdocs/notes/developers/200601/fugo_summary-011806.doc
web/trunk/htdocs/notes/developers/200603/
web/trunk/htdocs/notes/developers/200603/fugo_notes_030106.txt
web/trunk/htdocs/notes/developers/200603/fugo_notes_030806.txt
web/trunk/htdocs/notes/developers/200603/fugo_summary-032206.txt
web/trunk/htdocs/notes/developers/200604/
web/trunk/htdocs/notes/developers/200604/fugo_notes-042606.txt
web/trunk/htdocs/notes/developers/200604/fugo_summary-040506.doc
web/trunk/htdocs/notes/developers/200605/
web/trunk/htdocs/notes/developers/200605/fugo_notes-052406.txt
web/trunk/htdocs/notes/developers/200605/fugo_notes-053106.txt
web/trunk/htdocs/notes/developers/200605/fugo_notes_051706.txt
web/trunk/htdocs/notes/developers/200606/
web/trunk/htdocs/notes/developers/200606/fugo_notes_060706.txt
web/trunk/htdocs/notes/developers/200607/
web/trunk/htdocs/notes/developers/200607/fugo_notes-070506.txt
web/trunk/htdocs/notes/developers/200607/fugo_notes-071206.txt
web/trunk/htdocs/notes/developers/200608/
web/trunk/htdocs/notes/developers/200608/fugo_notes_080906.txt
web/trunk/htdocs/notes/developers/200608/fugo_notes_081606.txt
web/trunk/htdocs/notes/developers/200608/fugo_notes_083006.txt
web/trunk/htdocs/notes/developers/200609/
web/trunk/htdocs/notes/developers/200609/fugo_notes_092006.txt
web/trunk/htdocs/notes/developers/200609/obi_notes_092706.txt
web/trunk/htdocs/notes/developers/200610/
web/trunk/htdocs/notes/developers/200610/fugo_notes-100505.txt
web/trunk/htdocs/notes/developers/200610/fugo_notes-101205.txt
web/trunk/htdocs/notes/developers/200610/fugo_notes-101905.txt
web/trunk/htdocs/notes/developers/200610/fugo_notes-102605.txt
web/trunk/htdocs/notes/developers/200611/
web/trunk/htdocs/notes/developers/200611/01NOV2006.txt
web/trunk/htdocs/notes/developers/200611/15NOV2006.txt
web/trunk/htdocs/notes/developers/200611/22NOV2006.txt
web/trunk/htdocs/notes/developers/200611/29NOV2006.txt
web/trunk/htdocs/notes/developers/200612/
web/trunk/htdocs/notes/developers/200612/06DEC2006.txt
web/trunk/htdocs/notes/developers/200701/
web/trunk/htdocs/notes/developers/200701/03JAN2007.txt
web/trunk/htdocs/notes/developers/200701/17JAN2007.txt
web/trunk/htdocs/notes/developers/200701/24JAN2007.txt
web/trunk/htdocs/notes/developers/200702/
web/trunk/htdocs/notes/developers/200702/07Feb2007.txt
web/trunk/htdocs/notes/developers/200702/21Feb2007.txt
web/trunk/htdocs/notes/developers/200702/28Feb2007.txt
web/trunk/htdocs/notes/developers/200702/dev_call_28_Feb_2007.txt
web/trunk/htdocs/notes/developers/200703/
web/trunk/htdocs/notes/developers/200703/07Mar2007.txt
web/trunk/htdocs/notes/developers/200703/21Mar2007.txt
web/trunk/htdocs/notes/developers/200703/23May2007.txt
web/trunk/htdocs/notes/developers/200704/
web/trunk/htdocs/notes/developers/200704/04Apr2007.txt
web/trunk/htdocs/notes/developers/200704/18Apr2007.txt
web/trunk/htdocs/notes/developers/200704/25Apr2007.txt
web/trunk/htdocs/notes/developers/200705/
web/trunk/htdocs/notes/developers/200705/02May2007.txt
web/trunk/htdocs/notes/developers/200705/23May2007.txt
web/trunk/htdocs/notes/developers/200706/
web/trunk/htdocs/notes/developers/200706/27June2007.txt
web/trunk/htdocs/notes/developers/200706/6June2007.txt
web/trunk/htdocs/notes/developers/200707/
web/trunk/htdocs/notes/developers/200707/18July2007.txt
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From: <all...@us...> - 2007-08-15 11:35:55
|
Revision: 129
http://obi.svn.sourceforge.net/obi/?rev=129&view=rev
Author: allysonlister
Date: 2007-08-15 04:35:51 -0700 (Wed, 15 Aug 2007)
Log Message:
-----------
Deleted incorrect placement of notes directory
Removed Paths:
-------------
web/trunk/notes/
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From: <all...@us...> - 2007-08-15 11:34:06
|
Revision: 127
http://obi.svn.sourceforge.net/obi/?rev=127&view=rev
Author: allysonlister
Date: 2007-08-15 04:31:47 -0700 (Wed, 15 Aug 2007)
Log Message:
-----------
Added the notes dir. which until now has not been in subversion. Also added Maintenance.txt, a file that will not go on shell.sourceforge.net, but which should be used as instructions for how to update the static page on that server.
Added Paths:
-----------
web/trunk/notes/
web/trunk/notes/coordinators/
web/trunk/notes/coordinators/13DEC2006.txt
web/trunk/notes/coordinators/FuGO_notes_coordCall_140606.txt
web/trunk/notes/coordinators/fugo_notes_coordCall-051106.txt
web/trunk/notes/coordinators/fugo_summary_coordCall-011106.doc
web/trunk/notes/coordinators/fugo_summary_coordCall-032706.doc
web/trunk/notes/coordinators/fugo_summary_coordCall-121405.doc
web/trunk/notes/developers/
web/trunk/notes/developers/200511/
web/trunk/notes/developers/200511/fugo_notes-110905.txt
web/trunk/notes/developers/200511/fugo_notes-112305.doc
web/trunk/notes/developers/200511/fugo_notes-113005.txt
web/trunk/notes/developers/200512/
web/trunk/notes/developers/200512/fugo_notes-120705.txt
web/trunk/notes/developers/200512/fugo_notes-122105.txt
web/trunk/notes/developers/200512/fugo_summary-122105.doc
web/trunk/notes/developers/200601/
web/trunk/notes/developers/200601/fugo_notes-011806.txt
web/trunk/notes/developers/200601/fugo_notes_010406.txt
web/trunk/notes/developers/200601/fugo_notes_summary-012506.txt
web/trunk/notes/developers/200601/fugo_summary-011806.doc
web/trunk/notes/developers/200603/
web/trunk/notes/developers/200603/fugo_notes_030106.txt
web/trunk/notes/developers/200603/fugo_notes_030806.txt
web/trunk/notes/developers/200603/fugo_summary-032206.txt
web/trunk/notes/developers/200604/
web/trunk/notes/developers/200604/fugo_notes-042606.txt
web/trunk/notes/developers/200604/fugo_summary-040506.doc
web/trunk/notes/developers/200605/
web/trunk/notes/developers/200605/fugo_notes-052406.txt
web/trunk/notes/developers/200605/fugo_notes-053106.txt
web/trunk/notes/developers/200605/fugo_notes_051706.txt
web/trunk/notes/developers/200606/
web/trunk/notes/developers/200606/fugo_notes_060706.txt
web/trunk/notes/developers/200607/
web/trunk/notes/developers/200607/fugo_notes-070506.txt
web/trunk/notes/developers/200607/fugo_notes-071206.txt
web/trunk/notes/developers/200608/
web/trunk/notes/developers/200608/fugo_notes_080906.txt
web/trunk/notes/developers/200608/fugo_notes_081606.txt
web/trunk/notes/developers/200608/fugo_notes_083006.txt
web/trunk/notes/developers/200609/
web/trunk/notes/developers/200609/fugo_notes_092006.txt
web/trunk/notes/developers/200609/obi_notes_092706.txt
web/trunk/notes/developers/200610/
web/trunk/notes/developers/200610/fugo_notes-100505.txt
web/trunk/notes/developers/200610/fugo_notes-101205.txt
web/trunk/notes/developers/200610/fugo_notes-101905.txt
web/trunk/notes/developers/200610/fugo_notes-102605.txt
web/trunk/notes/developers/200611/
web/trunk/notes/developers/200611/01NOV2006.txt
web/trunk/notes/developers/200611/15NOV2006.txt
web/trunk/notes/developers/200611/22NOV2006.txt
web/trunk/notes/developers/200611/29NOV2006.txt
web/trunk/notes/developers/200612/
web/trunk/notes/developers/200612/06DEC2006.txt
web/trunk/notes/developers/200701/
web/trunk/notes/developers/200701/03JAN2007.txt
web/trunk/notes/developers/200701/17JAN2007.txt
web/trunk/notes/developers/200701/24JAN2007.txt
web/trunk/notes/developers/200702/
web/trunk/notes/developers/200702/07Feb2007.txt
web/trunk/notes/developers/200702/21Feb2007.txt
web/trunk/notes/developers/200702/28Feb2007.txt
web/trunk/notes/developers/200702/dev_call_28_Feb_2007.txt
web/trunk/notes/developers/200703/
web/trunk/notes/developers/200703/07Mar2007.txt
web/trunk/notes/developers/200703/21Mar2007.txt
web/trunk/notes/developers/200703/23May2007.txt
web/trunk/notes/developers/200704/
web/trunk/notes/developers/200704/04Apr2007.txt
web/trunk/notes/developers/200704/18Apr2007.txt
web/trunk/notes/developers/200704/25Apr2007.txt
web/trunk/notes/developers/200705/
web/trunk/notes/developers/200705/02May2007.txt
web/trunk/notes/developers/200705/23May2007.txt
web/trunk/notes/developers/200706/
web/trunk/notes/developers/200706/27June2007.txt
web/trunk/notes/developers/200706/6June2007.txt
web/trunk/notes/developers/200707/
web/trunk/notes/developers/200707/18July2007.txt
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
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From: <all...@us...> - 2007-08-15 11:34:06
|
Revision: 128
http://obi.svn.sourceforge.net/obi/?rev=128&view=rev
Author: allysonlister
Date: 2007-08-15 04:31:55 -0700 (Wed, 15 Aug 2007)
Log Message:
-----------
Added the notes dir. which until now has not been in subversion. Also added Maintenance.txt, a file that will not go on shell.sourceforge.net, but which should be used as instructions for how to update the static page on that server.
Added Paths:
-----------
web/trunk/Maintenance.txt
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From: <dan...@us...> - 2007-08-15 10:48:31
|
Revision: 126
http://obi.svn.sourceforge.net/obi/?rev=126&view=rev
Author: daniel_schober
Date: 2007-08-15 03:48:27 -0700 (Wed, 15 Aug 2007)
Log Message:
-----------
The corresponding Call Notes: InstrumentMinutes14August2007
Participants: Ryan Brinkmann, Allyson Lister, Daniel Schober
Checking marked classes: ?column_chromatography_solvent goes to Biomaterial
?collection_tube is it cardinal part of fluidic system? Move to Labware?
flow_cell ? Make name more explicit is it a chamber as its subclasses imply?
?jet_in_air_flow_chamber is a Flow cell? (apply naming convention: Dont use ellipse or apocope, be explicit. 'Flow cell' consists of qualifier terms and omits the head noun. Ryan: What is a flow cell? better 'flow cell compartment'?
?interrogation_point not an object, more a location or spatial entity
?sample_fluid, ?sheath_fluid DS: Is a fluid an instrument? Or even part of an instrument ? Its a biomaterial.
same with ?sheath_propellent
?flow_cytometer: DS: Is this class justified? (has currently only one subclass), ask Ryan and Function Branch for differrentiae...
Added a cytometer class and image cytometer.
?liquid_handler more an inferred thing? DS: Is this class justified? Its a unnamed class. If so, put a fluidic_system and the fluidic_subsystem as subclasses. TW: This is required by MO. FG & DS: Capture as function. All: Needs to be reviewed, according to query use case. If we keep it its kept as unnamed owl class. The liquid handling class remains but as an undefined class with are unlikely to have children. It is expected that the reasoner would classifiy appropriate classes under this class that meet the have the liquid_handling function relation.
liquid_chromatography_instrument (removed comment and questiobnmark.
Checked for obo foundry naming convention: as under http://obofoundry.org/wiki/index.php/Naming Cleared some Labware Plurals...
Discussed deadlines and implications for our branch.
Discussed Subsystem and Part_of issues e.g. optical_subsystem
Modified Paths:
--------------
branchDevelopment/trunk/InstrumentAndPart.owl
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From: <fgi...@us...> - 2007-08-14 20:59:40
|
Revision: 125
http://obi.svn.sourceforge.net/obi/?rev=125&view=rev
Author: fgibson_sf
Date: 2007-08-14 13:59:38 -0700 (Tue, 14 Aug 2007)
Log Message:
-----------
Added Paths:
-----------
branchDevelopment/development-examples/
branchDevelopment/development-examples/TheOntologyOfObjects/
branchDevelopment/development-examples/TheOntologyOfObjects/Object.owl
branchDevelopment/development-examples/TheOntologyOfObjects/TheOntologyOfObjects.html
branchDevelopment/development-examples/TheOntologyOfObjects/TheOntologyOfObjects_media/
branchDevelopment/development-examples/TheOntologyOfObjects/TheOntologyOfObjects_media/ProductionInfo.xml
branchDevelopment/development-examples/TheOntologyOfObjects/TheOntologyOfObjects_media/TheOntologyOfObjects.avi
branchDevelopment/development-examples/TheOntologyOfObjects/TheOntologyOfObjects_media/TheOntologyOfObjects_player_embed.js
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From: <al...@us...> - 2007-08-07 09:45:02
|
Revision: 124
http://obi.svn.sourceforge.net/obi/?rev=124&view=rev
Author: alanr
Date: 2007-08-07 02:45:03 -0700 (Tue, 07 Aug 2007)
Log Message:
-----------
missed in the last checkin
Modified Paths:
--------------
branchDevelopment/trunk/obi.owl.template
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From: <al...@us...> - 2007-08-07 09:42:59
|
Revision: 123
http://obi.svn.sourceforge.net/obi/?rev=123&view=rev
Author: alanr
Date: 2007-08-07 02:43:00 -0700 (Tue, 07 Aug 2007)
Log Message:
-----------
Update OBI to use beta bfo 1.1 (addition of generically dependent
continuant, removal of covering axiom for realizables)
This requires changes to ro_bfo_bridge, now forked to
ro_bfo_bridge11.owl in our svn.
All the files that used the bfo 1.0 namespace needed to be updated to
the 1.1 namespace
OBIs definition of generically dependent continuant has been removed
and references to it changed back to BFO.
New script make-all-in-one.pl. This makes a single ontology that
doesn't import anything, including all the external ontologies. That's
important because for the moment there isn't any bfo 1.1 ro_bfo_bridge
to import.
This required a couple more changes. Minor: Addition of a namespace to TheRest.owl.
Major, modifying protege.owl so that full URIs were used everywhere, in order that
the combination script didn't have to do more work.
People who've already downloaded and are using the svn will need to
update their obi.repository and obi.owl.
Obi.repository should refer to bfo11.owl instead of bfo.owl and
ro_bfo_bridge11.owl instead of ro_bfo_bridge.owl.
Obi.owl should refer to http://www.ifomis.org/bfo/1.1 versus http://www.ifomis.org/bfo/1.0 and
http://purl.org/obo/owl/ro_bfo_bridge/1.1 versus http://purl.org/obo/owl/ro_bfo_bridge
Modified Paths:
--------------
branchDevelopment/trunk/AnnotationProperty.owl
branchDevelopment/trunk/Biomaterial.owl
branchDevelopment/trunk/DataTransformation.owl
branchDevelopment/trunk/DigitalEntityPlus.owl
branchDevelopment/trunk/InstrumentAndPart.owl
branchDevelopment/trunk/OBI-Function.owl
branchDevelopment/trunk/Obsolete.owl
branchDevelopment/trunk/Plan.owl
branchDevelopment/trunk/ProtocolApplication.owl
branchDevelopment/trunk/Quality.owl
branchDevelopment/trunk/Relations.owl
branchDevelopment/trunk/Role.owl
branchDevelopment/trunk/TheRest.owl
branchDevelopment/trunk/external/protege.owl
branchDevelopment/trunk/obi-lsw.owl.template
branchDevelopment/trunk/obi.repository.template
branchDevelopment/trunk/obi.repository.template.pc
Added Paths:
-----------
branchDevelopment/trunk/bfo/bfo11.owl
branchDevelopment/trunk/external/ro_bfo_bridge11.owl
branchDevelopment/trunk/make-all-in-one.pl
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From: <bb...@us...> - 2007-07-30 23:28:10
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Revision: 122
http://obi.svn.sourceforge.net/obi/?rev=122&view=rev
Author: bbug
Date: 2007-07-30 16:28:13 -0700 (Mon, 30 Jul 2007)
Log Message:
-----------
Combineded the old instrument_function class from TheRest.owl with the newer version under OBI-Function.owl that includes the minimal metadata.
Modified Paths:
--------------
branchDevelopment/trunk/OBI-Function.owl
branchDevelopment/trunk/TheRest.owl
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From: <dan...@us...> - 2007-07-30 16:26:08
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Revision: 121
http://obi.svn.sourceforge.net/obi/?rev=121&view=rev
Author: daniel_schober
Date: 2007-07-30 09:26:10 -0700 (Mon, 30 Jul 2007)
Log Message:
-----------
updated
Modified Paths:
--------------
branchDevelopment/trunk/lastac_autoID/default.properties.InstrumentAndPart
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From: <dan...@us...> - 2007-07-30 16:18:46
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Revision: 120
http://obi.svn.sourceforge.net/obi/?rev=120&view=rev
Author: daniel_schober
Date: 2007-07-30 09:18:45 -0700 (Mon, 30 Jul 2007)
Log Message:
-----------
Changed forceReadOnly property for biomaterial branch in pc repository template file to forceReadOnly=true
implemented the [branchname]_temp convention for container classes
Modified Paths:
--------------
branchDevelopment/trunk/InstrumentAndPart.owl
branchDevelopment/trunk/obi.repository.template.pc
Property Changed:
----------------
branchDevelopment/trunk/
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From: <fgi...@us...> - 2007-07-30 13:20:27
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Revision: 119
http://obi.svn.sourceforge.net/obi/?rev=119&view=rev
Author: fgibson_sf
Date: 2007-07-30 06:20:23 -0700 (Mon, 30 Jul 2007)
Log Message:
-----------
Missing the following in obi.repository.template.pc
file:/C:/Documents%20and%20Settings/alanr/Desktop/obi/AnnotationProperty.owl?forceReadOnly=true
Modified Paths:
--------------
branchDevelopment/trunk/obi.repository.template.pc
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From: <al...@us...> - 2007-07-29 17:35:33
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Revision: 118
http://obi.svn.sourceforge.net/obi/?rev=118&view=rev
Author: alanr
Date: 2007-07-29 10:35:32 -0700 (Sun, 29 Jul 2007)
Log Message:
-----------
HTML report for browsing
Added Paths:
-----------
branchDevelopment/trunk/obi-lsw-report.html
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From: <al...@us...> - 2007-07-29 16:56:54
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Revision: 117
http://obi.svn.sourceforge.net/obi/?rev=117&view=rev
Author: alanr
Date: 2007-07-29 09:56:46 -0700 (Sun, 29 Jul 2007)
Log Message:
-----------
Edits from PA meeting of 7/26/2007 with Alan Ruttenberg and Randi Vita
Modified Paths:
--------------
branchDevelopment/trunk/ProtocolApplication.owl
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From: <all...@us...> - 2007-07-17 15:35:57
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Revision: 116
http://obi.svn.sourceforge.net/obi/?rev=116&view=rev
Author: allysonlister
Date: 2007-07-17 08:35:01 -0700 (Tue, 17 Jul 2007)
Log Message:
-----------
Removed reagent from defintion of platform
Modified Paths:
--------------
branchDevelopment/trunk/InstrumentAndPart.owl
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From: <al...@us...> - 2007-07-16 03:42:38
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Revision: 115
http://obi.svn.sourceforge.net/obi/?rev=115&view=rev
Author: alanr
Date: 2007-07-15 20:42:40 -0700 (Sun, 15 Jul 2007)
Log Message:
-----------
owl full statements, such as dataranges for annotation properties
Added Paths:
-----------
branchDevelopment/trunk/obi-owl-full.owl
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From: <al...@us...> - 2007-07-16 03:32:23
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Revision: 114
http://obi.svn.sourceforge.net/obi/?rev=114&view=rev
Author: alanr
Date: 2007-07-15 20:32:20 -0700 (Sun, 15 Jul 2007)
Log Message:
-----------
This is a checkin of the most recent state of OBI development at the end of the workshop.
Not all classes have OBI ids or definitions (particularly the ones that were added as
we worked through the use cases at the workshop)
InstrumentAndPart.owl
platform is moved from TheRest.owl to InstrumentAndPart.owl
obi.owl.template
Added Quality.owl
ProtocolApplication.owl
Additions for use cases we worked on at workshop
obi-lsw.owl.template
A template for the top level owl file that should be used for LSW
Biomaterial.owl
Additions for use cases we worked on at workshop
Quality.owl
New file, currently no OBI specific qualities
Plan.owl
Additions for use cases we worked on at workshop, including complex
definition of intervention study (that now works) :
is_realized_as some
(span:Process and
(p11:has_part some
(has_input some
(has_role some treated_role))))
OBI-Function.owl
Changed "definition_source" to current "definition_citation"
Relations.owl
New relations (no definitions yet, but domain and ranges in place): has_quality, has_role, is_realized_as/is_realization_of, is_concretized_as/is_concretization_of
obi.repository.template
Add Quality.owl
obi.repository.template.pc
Add Quality.owl, OBI-Function.owl, obi-owl-full.owl
Role.owl
Additions for use cases we worked on at workshop
instructions-svn-local.txt
Updated to include PC instructions for obi.repository, new branch files.
Modified Paths:
--------------
branchDevelopment/trunk/Biomaterial.owl
branchDevelopment/trunk/InstrumentAndPart.owl
branchDevelopment/trunk/OBI-Function.owl
branchDevelopment/trunk/Plan.owl
branchDevelopment/trunk/ProtocolApplication.owl
branchDevelopment/trunk/Relations.owl
branchDevelopment/trunk/Role.owl
branchDevelopment/trunk/instructions-svn-local.txt
branchDevelopment/trunk/obi.owl.template
branchDevelopment/trunk/obi.repository.template
branchDevelopment/trunk/obi.repository.template.pc
Added Paths:
-----------
branchDevelopment/trunk/Quality.owl
branchDevelopment/trunk/obi-lsw.owl.template
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From: <al...@us...> - 2007-07-12 18:41:05
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Revision: 113
http://obi.svn.sourceforge.net/obi/?rev=113&view=rev
Author: alanr
Date: 2007-07-12 11:41:06 -0700 (Thu, 12 Jul 2007)
Log Message:
-----------
Fixed bugs
Modified Paths:
--------------
branchDevelopment/trunk/reasoner-example-workshop-2007-July.owl
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From: <jam...@us...> - 2007-07-12 15:03:11
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Revision: 112
http://obi.svn.sourceforge.net/obi/?rev=112&view=rev
Author: jamesmalone
Date: 2007-07-12 08:03:06 -0700 (Thu, 12 Jul 2007)
Log Message:
-----------
Zipped .zip corrected version of file. Unzip this into plugins directory to use.
Added Paths:
-----------
tools/AutoIDPlugin/autoid.zip
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From: <jam...@us...> - 2007-07-12 15:00:32
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Revision: 111
http://obi.svn.sourceforge.net/obi/?rev=111&view=rev
Author: jamesmalone
Date: 2007-07-12 08:00:34 -0700 (Thu, 12 Jul 2007)
Log Message:
-----------
Zipped .rar corrected version of file. Unzip this into plugins directory to use.
Added Paths:
-----------
tools/AutoIDPlugin/autoid.rar
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