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From: Alan R. <ala...@gm...> - 2007-07-02 16:01:20
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We could try to understand/discuss Cristian's recent proposal (attached) or see if we can get him on the line to defend it :) |
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From: Alan R. <ala...@gm...> - 2007-07-02 01:13:01
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Are we planned to TC at 3PM? -Alan |
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From: William B. <Wil...@Dr...> - 2007-06-25 21:00:45
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Hi All, Many thanks again for such an engaging discussion on this topic. I realize it may either feel like a tempest in a teapot or a critique you've been through before, but I do find as we get to describing specific functions, we can often uncover ways in which our current understanding is incomplete. I completely agree with Suzi - we need a clear set of guidelines (preferably explicit rules) for how to define - and annotate data using - OBI Function. I also believe that as soon as we can come to some consensus on guidelines (even if we can't get to rules), we should work up a set of about 6 examples of broad scope to provide the rest of the OBI developers with a more concrete sense of how our recommendations can be implemented and where they may ultimately lead. Here's the current minutes of the meeting. I must move on to other things. I'd like to flesh this out more this eve, but I already have a long stack to get to tonight, so it may slip. I wanted to put this out there, so you all could review/modify it as you had the time: https://wiki.cbil.upenn.edu/obiwiki/index.php/FunctionNeeds/ TConsMinutes Thanks again for participating on this OBI Branch. I do believe the discussions we are having will continue to be useful both to OBI and to the wider community of BFO users. One other point comes to mind. Some of us have had the time to read through Ingvar's articles on Function - particularly 'The Constituent Function Analysis of Functions (2006)'. Would someone have time and be willing to work up a summary doc - on the Wiki or in Google Docs - to place Ingvar's work in the context of what we are trying to do with OBI Functions. If one person could get this started - even just in outline form - I think one or two more of us would be able to help to flesh this out. Any volunteers? Cheers, Bill On Jun 25, 2007, at 3:05 PM, William Bug wrote: > Hi Suzi, > > I notice you aren't on Skype right now. > > Is there a number I call you at? > > Cheers, > Bill > > On Jun 25, 2007, at 2:41 PM, Suzanna Lewis wrote: > >> Yes, but what is the phone number to call, and the conference id # >> please. >> >> -s >> >> On Jun 25, 2007, at 11:32 AM, William Bug wrote: >> >>> Hi All, >>> >>> I'm planning to bring us together via a Skype conference call in >>> about 30 minutes. >>> >>> The brief agenda for today is: >>> 1) Review previous discussions & Action Items >>> * OBI Function examples >>> * contacting Ingvar Johansson (http://hem.passagen.se/ >>> ijohansson/index.html) from IFOMIS re: Function in BFO >>> 2) Upcoming OBI meeting >>> * special review with OBI Role branch (possible relations, too). >>> * soliciting OBI functions from other branches. >>> >>> I'll try to keep things short. I can only do about 30 - 40 >>> minutes today, myself. >>> >>> Is everyone still on for today? >>> >>> Cheers, >>> Bill >>> >>> Bill Bug >>> Senior Research Analyst/Ontological Engineer >>> >>> Laboratory for Bioimaging & Anatomical Informatics >>> www.neuroterrain.org >>> Department of Neurobiology & Anatomy >>> Drexel University College of Medicine >>> 2900 Queen Lane >>> Philadelphia, PA 19129 >>> 215 991 8430 (ph) >>> 610 457 0443 (mobile) >>> 215 843 9367 (fax) >>> >>> >>> Please Note: I now have a new email - Wil...@Dr... >>> >>> >>> >>> >> > > Bill Bug > Senior Research Analyst/Ontological Engineer > > Laboratory for Bioimaging & Anatomical Informatics > www.neuroterrain.org > Department of Neurobiology & Anatomy > Drexel University College of Medicine > 2900 Queen Lane > Philadelphia, PA 19129 > 215 991 8430 (ph) > 610 457 0443 (mobile) > 215 843 9367 (fax) > > > Please Note: I now have a new email - Wil...@Dr... > > > > Bill Bug Senior Research Analyst/Ontological Engineer Laboratory for Bioimaging & Anatomical Informatics www.neuroterrain.org Department of Neurobiology & Anatomy Drexel University College of Medicine 2900 Queen Lane Philadelphia, PA 19129 215 991 8430 (ph) 610 457 0443 (mobile) 215 843 9367 (fax) Please Note: I now have a new email - Wil...@Dr... |
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From: Bill B. <bb...@sp...> - 2007-06-25 18:33:26
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Ooops - forget to "eat our own dog food" and use the OBI-Function branch mailing list. Begin forwarded message: > From: William Bug <Wil...@dr...> > Date: June 25, 2007 2:32:38 PM EDT > To: Suzanna Lewis <su...@be...>, Helen Causton > <hel...@cs...>, Alan Ruttenberg > <ala...@gm...> > Subject: OBI Function branch - we are on for today - at 3PM EDT/12 > PM PDT > > Hi All, > > I'm planning to bring us together via a Skype conference call in > about 30 minutes. > > The brief agenda for today is: > 1) Review previous discussions & Action Items > * OBI Function examples > * contacting Ingvar Johansson (http://hem.passagen.se/ijohansson/ > index.html) from IFOMIS re: Function in BFO > 2) Upcoming OBI meeting > * special review with OBI Role branch (possible relations, too). > * soliciting OBI functions from other branches. > > I'll try to keep things short. I can only do about 30 - 40 minutes > today, myself. > > Is everyone still on for today? > > Cheers, > Bill > > Bill Bug > Senior Research Analyst/Ontological Engineer > > Laboratory for Bioimaging & Anatomical Informatics > www.neuroterrain.org > Department of Neurobiology & Anatomy > Drexel University College of Medicine > 2900 Queen Lane > Philadelphia, PA 19129 > 215 991 8430 (ph) > 610 457 0443 (mobile) > 215 843 9367 (fax) > > > Please Note: I now have a new email - Wil...@Dr... > > > > |
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From: Suzanna L. <su...@be...> - 2007-06-16 19:51:40
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It was okay by me. Are we meeting this Monday (June 18th)? 8AM? (Pacific that is) -S On Jun 11, 2007, at 12:11 PM, William Bug wrote: > Hi All, > > Suzi has an all day meeting today, so I thought we'd put off until > next Monday. > > I've not had a chance to do much on the Function examples at this > point anyway but expect to be able to make time for that by next > Monday. > > So I'm postponing for today, if that is OK with everyone else. > > Sorry for the late notice. > > Cheers, > Bill > > On May 31, 2007, at 3:48 AM, Alan Ruttenberg wrote: > >> Regrets - I won't be able to make this one, nor probably the next >> (OWLED). >> -Alan >> >> On May 30, 2007, at 11:50 AM, Suzanna Lewis wrote: >> >>> Sorry I missed this call. >>> >>> When will the next one be? On June 4th at 8am (pacific)? >>> >>> -S >>> >>> On May 21, 2007, at 11:56 AM, William Bug wrote: >>> >>>> Hi All, >>>> >>>> I've put up a minutes and an agenda page for the OBI-Function >>>> calls. >>>> https://www.cbil.upenn.edu/fugowiki/index.php/FunctionNeeds/ >>>> TConsAgendas >>>> https://www.cbil.upenn.edu/fugowiki/index.php/FunctionNeeds/ >>>> TConsMinutes >>>> >>>> I'm afraid I wasn't able to get much else done in the last week, >>>> so maybe we can keep this week's meeting short. >>>> >>>> Helen does plan to join these calls, but not today. >>>> >>>> Will call on Skype in a few minutes. >>>> >>>> Cheers, >>>> Bill >>>> >>>> P.S.: Is everyone here now subscribed to the list? e.g., can >>>> mail to the list email and expect you all will receive it? >>> >>> I haven't actively subscribed, but will. >>> >>>> >>>> >>>> Bill Bug >>>> Senior Research Analyst/Ontological Engineer >>>> >>>> Laboratory for Bioimaging & Anatomical Informatics >>>> www.neuroterrain.org >>>> Department of Neurobiology & Anatomy >>>> Drexel University College of Medicine >>>> 2900 Queen Lane >>>> Philadelphia, PA 19129 >>>> 215 991 8430 (ph) >>>> 610 457 0443 (mobile) >>>> 215 843 9367 (fax) >>>> >>>> >>>> Please Note: I now have a new email - Wil...@Dr... >>>> >>>> >>>> >>>> >>> >> > > Bill Bug > Senior Research Analyst/Ontological Engineer > > Laboratory for Bioimaging & Anatomical Informatics > www.neuroterrain.org > Department of Neurobiology & Anatomy > Drexel University College of Medicine > 2900 Queen Lane > Philadelphia, PA 19129 > 215 991 8430 (ph) > 610 457 0443 (mobile) > 215 843 9367 (fax) > > > Please Note: I now have a new email - Wil...@Dr... > > > > |
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From: William B. <wil...@dr...> - 2007-06-11 19:09:01
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Hi All, Suzi has an all day meeting today, so I thought we'd put off until next Monday. I've not had a chance to do much on the Function examples at this point anyway but expect to be able to make time for that by next Monday. So I'm postponing for today, if that is OK with everyone else. Sorry for the late notice. Cheers, Bill On May 31, 2007, at 3:48 AM, Alan Ruttenberg wrote: > Regrets - I won't be able to make this one, nor probably the next > (OWLED). > -Alan > > On May 30, 2007, at 11:50 AM, Suzanna Lewis wrote: > >> Sorry I missed this call. >> >> When will the next one be? On June 4th at 8am (pacific)? >> >> -S >> >> On May 21, 2007, at 11:56 AM, William Bug wrote: >> >>> Hi All, >>> >>> I've put up a minutes and an agenda page for the OBI-Function calls. >>> https://www.cbil.upenn.edu/fugowiki/index.php/FunctionNeeds/ >>> TConsAgendas >>> https://www.cbil.upenn.edu/fugowiki/index.php/FunctionNeeds/ >>> TConsMinutes >>> >>> I'm afraid I wasn't able to get much else done in the last week, >>> so maybe we can keep this week's meeting short. >>> >>> Helen does plan to join these calls, but not today. >>> >>> Will call on Skype in a few minutes. >>> >>> Cheers, >>> Bill >>> >>> P.S.: Is everyone here now subscribed to the list? e.g., can >>> mail to the list email and expect you all will receive it? >> >> I haven't actively subscribed, but will. >> >>> >>> >>> Bill Bug >>> Senior Research Analyst/Ontological Engineer >>> >>> Laboratory for Bioimaging & Anatomical Informatics >>> www.neuroterrain.org >>> Department of Neurobiology & Anatomy >>> Drexel University College of Medicine >>> 2900 Queen Lane >>> Philadelphia, PA 19129 >>> 215 991 8430 (ph) >>> 610 457 0443 (mobile) >>> 215 843 9367 (fax) >>> >>> >>> Please Note: I now have a new email - Wil...@Dr... >>> >>> >>> >>> >> > Bill Bug Senior Research Analyst/Ontological Engineer Laboratory for Bioimaging & Anatomical Informatics www.neuroterrain.org Department of Neurobiology & Anatomy Drexel University College of Medicine 2900 Queen Lane Philadelphia, PA 19129 215 991 8430 (ph) 610 457 0443 (mobile) 215 843 9367 (fax) Please Note: I now have a new email - Wil...@Dr... |
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From: Alan R. <ala...@gm...> - 2007-05-31 07:48:00
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Regrets - I won't be able to make this one, nor probably the next (OWLED). -Alan On May 30, 2007, at 11:50 AM, Suzanna Lewis wrote: > Sorry I missed this call. > > When will the next one be? On June 4th at 8am (pacific)? > > -S > > On May 21, 2007, at 11:56 AM, William Bug wrote: > >> Hi All, >> >> I've put up a minutes and an agenda page for the OBI-Function calls. >> https://www.cbil.upenn.edu/fugowiki/index.php/FunctionNeeds/ >> TConsAgendas >> https://www.cbil.upenn.edu/fugowiki/index.php/FunctionNeeds/ >> TConsMinutes >> >> I'm afraid I wasn't able to get much else done in the last week, >> so maybe we can keep this week's meeting short. >> >> Helen does plan to join these calls, but not today. >> >> Will call on Skype in a few minutes. >> >> Cheers, >> Bill >> >> P.S.: Is everyone here now subscribed to the list? e.g., can mail >> to the list email and expect you all will receive it? > > I haven't actively subscribed, but will. > >> >> >> Bill Bug >> Senior Research Analyst/Ontological Engineer >> >> Laboratory for Bioimaging & Anatomical Informatics >> www.neuroterrain.org >> Department of Neurobiology & Anatomy >> Drexel University College of Medicine >> 2900 Queen Lane >> Philadelphia, PA 19129 >> 215 991 8430 (ph) >> 610 457 0443 (mobile) >> 215 843 9367 (fax) >> >> >> Please Note: I now have a new email - Wil...@Dr... >> >> >> >> > |
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From: Suzanna L. <su...@be...> - 2007-05-30 15:51:10
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Sorry I missed this call. When will the next one be? On June 4th at 8am (pacific)? -S On May 21, 2007, at 11:56 AM, William Bug wrote: > Hi All, > > I've put up a minutes and an agenda page for the OBI-Function calls. > https://www.cbil.upenn.edu/fugowiki/index.php/FunctionNeeds/ > TConsAgendas > https://www.cbil.upenn.edu/fugowiki/index.php/FunctionNeeds/ > TConsMinutes > > I'm afraid I wasn't able to get much else done in the last week, so > maybe we can keep this week's meeting short. > > Helen does plan to join these calls, but not today. > > Will call on Skype in a few minutes. > > Cheers, > Bill > > P.S.: Is everyone here now subscribed to the list? e.g., can mail > to the list email and expect you all will receive it? I haven't actively subscribed, but will. > > > Bill Bug > Senior Research Analyst/Ontological Engineer > > Laboratory for Bioimaging & Anatomical Informatics > www.neuroterrain.org > Department of Neurobiology & Anatomy > Drexel University College of Medicine > 2900 Queen Lane > Philadelphia, PA 19129 > 215 991 8430 (ph) > 610 457 0443 (mobile) > 215 843 9367 (fax) > > > Please Note: I now have a new email - Wil...@Dr... > > > > |
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From: William B. <Wil...@Dr...> - 2007-05-28 20:40:10
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Hi All, Obviously, we're not meeting today on account of the holiday. Next week, Alan & I will both probably be on our way to the OWLED meeting in Innsbruck, so I'll like to reassemble the following Monday. So long as it still works for everyone, we can stick with the 3 PM EDT time period. Hope you all had a nice long Memorial Day weekend. Cheers, Bill Bill Bug Senior Research Analyst/Ontological Engineer Laboratory for Bioimaging & Anatomical Informatics www.neuroterrain.org Department of Neurobiology & Anatomy Drexel University College of Medicine 2900 Queen Lane Philadelphia, PA 19129 215 991 8430 (ph) 610 457 0443 (mobile) 215 843 9367 (fax) Please Note: I now have a new email - Wil...@Dr... |
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From: Chris S. <sto...@pc...> - 2007-05-23 19:10:09
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Dear Function Branch Editors, I'd like to draw your attention again to Trish's email on Branch =20 workflow. Can you please provide feedback on whether this workflow =20 can form the basis of a commonly agreed upon process (i.e., an SOP)? Thanks. Chris Chris Stoeckert, Ph.D. Research Professor, Dept. of Genetics 1415 Blockley Hall, Center for Bioinformatics 423 Guardian Dr., University of Pennsylvania Philadelphia, PA 19104 Ph: 215-573-4409 FAX: 215-573-3111 http://www.cbil.upenn.edu Begin forwarded message: > From: Trish Whetzel <wh...@pc...> > Date: May 10, 2007 9:22:54 AM EDT > To: OBI Developers <obi...@li...> > Subject: [Obi-devel] ObiBranch Workflow Diagram > > Hi all, > > Based on the need for documentation of our development process, I =20 > have put together a diagram to try to indicate what the ObiBranch =20 > workflow is to the best of my understanding. > > There are some steps towards the end, WRT to merging of the branch =20 > files, that is not clear as well as some discussion needed on the =20 > steps of curating terms. I would like to discuss this at the next =20 > Developers call if that is ok with everyone. > > Trish=EF=BF=BC=20 > ----------------------------------------------------------------------=20= > --- > This SF.net email is sponsored by DB2 Express > Download DB2 Express C - the FREE version of DB2 express and take > control of your XML. No limits. Just data. Click to get it now. > http://sourceforge.net/powerbar/db2/=20 > _______________________________________________ > Obi-devel mailing list > Obi...@li... > https://lists.sourceforge.net/lists/listinfo/obi-devel |
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From: William B. <wil...@dr...> - 2007-05-21 18:54:27
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Hi All, I've put up a minutes and an agenda page for the OBI-Function calls. https://www.cbil.upenn.edu/fugowiki/index.php/FunctionNeeds/ TConsAgendas https://www.cbil.upenn.edu/fugowiki/index.php/FunctionNeeds/ TConsMinutes I'm afraid I wasn't able to get much else done in the last week, so maybe we can keep this week's meeting short. Helen does plan to join these calls, but not today. Will call on Skype in a few minutes. Cheers, Bill P.S.: Is everyone here now subscribed to the list? e.g., can mail to the list email and expect you all will receive it? Bill Bug Senior Research Analyst/Ontological Engineer Laboratory for Bioimaging & Anatomical Informatics www.neuroterrain.org Department of Neurobiology & Anatomy Drexel University College of Medicine 2900 Queen Lane Philadelphia, PA 19129 215 991 8430 (ph) 610 457 0443 (mobile) 215 843 9367 (fax) Please Note: I now have a new email - Wil...@Dr... |
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From: Suzanna L. <su...@be...> - 2007-05-14 15:03:18
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bill, what is your skype name? I'm suzi.lewis On May 12, 2007, at 4:17 AM, William Bug wrote: > That's fine, Alan. > > I realize everyone is very busy right now. > > Time is slipping away, however. > > I'm going to say Monday - this Monday, May 14th at 11 AM EST (4 PM > GMT/ 8 AM PDT) - and hope Suzi catches this email in time. > > Will this work for everyone else? > > If so, I'll expect to Skype everyone at that time. > > Remember - this is just an inaugural meeting to help define the > tasks more fully and discuss some general issues related to > function. I would remind everyone I placed some examples of OBI > "functions" out on the Function Branch Wiki page, so it would be > worth giving those a quick look if you can. They are at the bottom > of the page (and are just proposed examples - they may not be > completely BFO-compliant): > https://www.cbil.upenn.edu/fugowiki/index.php/FunctionTerms > > Just as a reminder, everyone should subscribe to the obo-function- > branch list email. I'll be certain to act more promptly to process > post requests, but I'm assuming once we've all joined the list, I > won't have to do this, unless some file attachment gums up the system. > > Cheers, > Bill > > On May 11, 2007, at 12:00 PM, Alan Ruttenberg wrote: > >> Thursday I'm at the clinical ontology workshop, so can't. >> Following week is much better. >> -Alan >> >> On May 11, 2007, at 7:08 AM, Suzanna Lewis wrote: >> >>> Thursday at either 8 or 9 (Pacific) would be best for me. >>> >>> I've got calls at those same times already on Tu & We, and Friday >>> I'm on a plane. >>> Monday is also a possibility, but I tend to neglect to look at my >>> calendar until I'm already in at work... >>> >>> -S >>> >>> On May 10, 2007, at 5:59 PM, William Bug wrote: >>> >>>> Great. >>>> >>>> Thank you both. >>>> >>>> So - Helen, Alan, and Suzi - is there a time next week when we >>>> could have our first meeting? >>>> >>>> Given we are spread across time zones from GMT to PDT, I expect >>>> the two options we have are: >>>> 11 AM EST (4 PM GMT - 8 AM PDT) >>>> 12 PM EST (5 PM GMT -9 AM PDT) >>>> >>>> Given we are scraping the extremes of GMT & PDT here, I'd defer >>>> to Suzi & Helen as to which will work best for you both. >>>> >>>> Right now, I have this slot available Mon, Tues, & Fri next week. >>>> >>>> What will work best for everyone else? >>>> >>>> Many thanks for helping to get the OBI-Function branch off to a >>>> swinging start! ;-) >>>> >>>> Cheers, >>>> Bill >>>> >>>> On May 10, 2007, at 10:24 AM, Chris Stoeckert wrote: >>>> >>>>> Hi Bill, >>>>> Helen Causton has kindly agreed to join the Function branch as >>>>> editor and represent the transcriptomics community. >>>>> Cheers, >>>>> Chris >>>>> >>>>> On May 6, 2007, at 4:12 PM, William Bug wrote: >>>>> >>>>>> Hi All, >>>>>> >>>>>> Well - the OBI-Function branch list has been noticeably silent >>>>>> since its launch a few weeks back. >>>>>> >>>>>> We've not yet received any "function" term lists beyond the >>>>>> original list of flow cytometry terms provide by Ryan back in >>>>>> late March. For those who may have terms on hand and think >>>>>> they are appropriate for the function branch, I urge you to >>>>>> review the examples on the OBI-Function Branch Wiki page for >>>>>> additional guidance (https://www.cbil.upenn.edu/fugowiki/ >>>>>> index.php/FunctionTerms). >>>>>> >>>>>> Regardless, if you think you have function terms, please do >>>>>> submit. >>>>>> >>>>>> I would also like to schedule an initial meeting for those who >>>>>> were assigned to participate on the OBI-Function branch (right >>>>>> now, just Suzi L., Alan R., and myself). This week is >>>>>> problematic, since Alan is one of the prime presenters at this >>>>>> week's WWW 2007 meeting in Banff for a demo created by the W3C >>>>>> SemWeb Health Care/Life Science Interest Group. Perhaps we >>>>>> can schedule for later in the week - or early next week? Suzi >>>>>> & Alan - please get back to me when you can with possible times. >>>>>> >>>>>> I'd also encourage anyone else who is interested to not be shy >>>>>> and join in the fun. Please just let me know when you'd be >>>>>> able to meet (late this week - or - early next week). >>>>>> >>>>>> Many thanks. >>>>>> >>>>>> Cheers, >>>>>> Bill >>>>>> >>>>>> >>>>>> Bill Bug >>>>>> Senior Research Analyst/Ontological Engineer >>>>>> >>>>>> Laboratory for Bioimaging & Anatomical Informatics >>>>>> www.neuroterrain.org >>>>>> Department of Neurobiology & Anatomy >>>>>> Drexel University College of Medicine >>>>>> 2900 Queen Lane >>>>>> Philadelphia, PA 19129 >>>>>> 215 991 8430 (ph) >>>>>> 610 457 0443 (mobile) >>>>>> 215 843 9367 (fax) >>>>>> >>>>>> >>>>>> Please Note: I now have a new email - Wil...@Dr... >>>>>> >>>>>> >>>>>> >>>>>> >>>>>> ----------------------------------------------------------------- >>>>>> -------- >>>>>> This SF.net email is sponsored by DB2 Express >>>>>> Download DB2 Express C - the FREE version of DB2 express and take >>>>>> control of your XML. No limits. Just data. Click to get it now. >>>>>> http://sourceforge.net/powerbar/db2/ >>>>>> _______________________________________________ >>>>>> Obi-function-branch mailing list >>>>>> Obi...@li... >>>>>> https://lists.sourceforge.net/lists/listinfo/obi-function-branch >>>>> >>>> >>>> Bill Bug >>>> Senior Research Analyst/Ontological Engineer >>>> >>>> Laboratory for Bioimaging & Anatomical Informatics >>>> www.neuroterrain.org >>>> Department of Neurobiology & Anatomy >>>> Drexel University College of Medicine >>>> 2900 Queen Lane >>>> Philadelphia, PA 19129 >>>> 215 991 8430 (ph) >>>> 610 457 0443 (mobile) >>>> 215 843 9367 (fax) >>>> >>>> >>>> Please Note: I now have a new email - Wil...@Dr... >>>> >>>> >>>> >>>> >>> >> > > Bill Bug > Senior Research Analyst/Ontological Engineer > > Laboratory for Bioimaging & Anatomical Informatics > www.neuroterrain.org > Department of Neurobiology & Anatomy > Drexel University College of Medicine > 2900 Queen Lane > Philadelphia, PA 19129 > 215 991 8430 (ph) > 610 457 0443 (mobile) > 215 843 9367 (fax) > > > Please Note: I now have a new email - Wil...@Dr... > > > > |
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From: William B. <Wil...@dr...> - 2007-05-13 07:56:08
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Hi All, I've create the Google Calendar entry for our OBI-Function meeting - this Monday, 5/14, 11 - 12 PM, EDT (4 - 5 PM, GMT and 8 - 9 AM, PDT) and added Alan & Helen C. to the event. Two quick comments: 1) Suzi - I wasn't certain which email to use for you on this, Suzi. It must be an email associated with a Google account, though it DOES NOT have to be a gmail account. 2) We overlap with an OBI-Plan Branch call. Is this a problem for anyone? Already, I realize Suzi may not get this message in sufficient time to be able to join us. If one other person is already committed to the OBI-Plan TCon, I'd want to re-schedule. None of us is explicitly listed on the OBI-Plan branch Wiki page, so I assume we're OK here, but I wanted to double-check. I'm planning on using Skype to conference us. I have Suzi & Alan's Skype IDs. Helen - would you please send me your Skype ID or another number I could dial you at? Many thanks. Cheers, Bill On May 13, 2007, at 3:16 AM, Allyson Lister wrote: > You're added - you can edit and manage sharing. > > :) Ally > > On 5/13/07, William Bug <Wil...@dr... > wrote: > HI Allyson, > > My Google account uses my ISP home email address - bb...@sp.... > > Many thanks. > > Cheers, > Bill > > On May 13, 2007, at 3:00 AM, Allyson Lister wrote: > >> Hi Trish, Bill, >> >> Bill - I just need your google username, and then I'll add you to >> the calendar so that you can edit as well as add other people >> yourself. Same goes for you, Trish. If neither of you have set up >> a google account ( e.g. mail, docs, groups etc etc) then you'll >> need to create one first. >> >> Trish, I'll be online until monday afternoon. We move on tuesday, >> and should get our phone hooked up sometime that day. In theory >> the broadband will be hooked up later this week, but there are no >> guarantees :) I'm on vacation all this coming week. >> >> Thanks! :) >> >> btw, anyone already signed up to the google calendar can also add >> people, if you need to add people after monday this week. those >> people currently are: alan, suzi, susanna, gilberto, frank, liju, >> jennifer. >> >> >> >> On 5/12/07, Trish Whetzel <wh...@pc... > wrote: >> I'm pleasantly clueless on how to add things to the calendar. If I >> figure >> it out I'll send mail. >> >> Trish >> >> PS - Allyson, what dates will you be offline for house moving? >> >> > How would I get set up to add events to this calendar. I've >> tried to figure >> > it out. >> > >> > I see a note on the relevant OBI WIki page stating "mail the >> group", but I'm >> > not certain what that means - obi-dev? >> > >> > Many thanks. >> > >> > Cheers, >> > Bill >> > >> > Begin forwarded message: >> > >> >> From: Alan Ruttenberg <ala...@gm... > >> >> Date: May 12, 2007 10:24:43 AM EDT >> >> To: William Bug <Wil...@Dr... > >> >> Subject: Re: [Obi-function-branch] It's alive! - the OBI- >> Function branch >> >> >> >> BTW, will you put the call with call in details on the OBI >> google calendar >> >> when you confirm it? >> >> -Alan >> >> >> >> On May 12, 2007, at 2:17 AM, William Bug wrote: >> >> >> >>> That's fine, Alan. >> >>> >> >>> I realize everyone is very busy right now. >> >>> >> >>> Time is slipping away, however. >> >>> >> >>> I'm going to say Monday - this Monday, May 14th at 11 AM EST >> (4 PM GMT/ 8 >> >>> AM PDT) - and hope Suzi catches this email in time. >> >>> >> >>> Will this work for everyone else? >> >>> >> >>> If so, I'll expect to Skype everyone at that time. >> >>> >> >>> Remember - this is just an inaugural meeting to help define >> the tasks more >> >>> fully and discuss some general issues related to function. I >> would remind >> >>> everyone I placed some examples of OBI "functions" out on the >> Function >> >>> Branch Wiki page, so it would be worth giving those a quick >> look if you >> >>> can. They are at the bottom of the page (and are just >> proposed examples - >> >>> they may not be completely BFO-compliant): >> >>> https://www.cbil.upenn.edu/fugowiki/index.php/FunctionTerms >> >>> >> >>> Just as a reminder, everyone should subscribe to the obo- >> function-branch >> >>> list email. I'll be certain to act more promptly to process post >> >>> requests, but I'm assuming once we've all joined the list, I >> won't have to >> >>> do this, unless some file attachment gums up the system. >> >>> >> >>> Cheers, >> >>> Bill >> >>> >> >>> On May 11, 2007, at 12:00 PM, Alan Ruttenberg wrote: >> >>> >> >>>> Thursday I'm at the clinical ontology workshop, so can't. >> Following week >> >>>> is much better. >> >>>> -Alan >> >>>> >> >>>> On May 11, 2007, at 7:08 AM, Suzanna Lewis wrote: >> >>>> >> >>>>> Thursday at either 8 or 9 (Pacific) would be best for me. >> >>>>> >> >>>>> I've got calls at those same times already on Tu & We, and >> Friday I'm on >> >>>>> a plane. >> >>>>> Monday is also a possibility, but I tend to neglect to look >> at my >> >>>>> calendar until I'm already in at work... >> >>>>> >> >>>>> -S >> >>>>> >> >>>>> On May 10, 2007, at 5:59 PM, William Bug wrote: >> >>>>> >> >>>>>> Great. >> >>>>>> >> >>>>>> Thank you both. >> >>>>>> >> >>>>>> So - Helen, Alan, and Suzi - is there a time next week when >> we could >> >>>>>> have our first meeting? >> >>>>>> >> >>>>>> Given we are spread across time zones from GMT to PDT, I >> expect the two >> >>>>>> options we have are: >> >>>>>> 11 AM EST (4 PM GMT - 8 AM PDT) >> >>>>>> 12 PM EST (5 PM GMT -9 AM PDT) >> >>>>>> >> >>>>>> Given we are scraping the extremes of GMT & PDT here, I'd >> defer to Suzi >> >>>>>> & Helen as to which will work best for you both. >> >>>>>> >> >>>>>> Right now, I have this slot available Mon, Tues, & Fri next >> week. >> >>>>>> >> >>>>>> What will work best for everyone else? >> >>>>>> >> >>>>>> Many thanks for helping to get the OBI-Function branch off >> to a >> >>>>>> swinging start! ;-) >> >>>>>> >> >>>>>> Cheers, >> >>>>>> Bill >> >>>>>> >> >>>>>> On May 10, 2007, at 10:24 AM, Chris Stoeckert wrote: >> >>>>>> >> >>>>>>> Hi Bill, >> >>>>>>> Helen Causton has kindly agreed to join the Function >> branch as editor >> >>>>>>> and represent the transcriptomics community. >> >>>>>>> Cheers, >> >>>>>>> Chris >> >>>>>>> >> >>>>>>> On May 6, 2007, at 4:12 PM, William Bug wrote: >> >>>>>>> >> >>>>>>>> Hi All, >> >>>>>>>> >> >>>>>>>> Well - the OBI-Function branch list has been noticeably >> silent since >> >>>>>>>> its launch a few weeks back. >> >>>>>>>> >> >>>>>>>> We've not yet received any "function" term lists beyond >> the original >> >>>>>>>> list of flow cytometry terms provide by Ryan back in late >> March. For >> >>>>>>>> those who may have terms on hand and think they are >> appropriate for >> >>>>>>>> the function branch, I urge you to review the examples on >> the >> >>>>>>>> OBI-Function Branch Wiki page for additional guidance >> >>>>>>>> (https://www.cbil.upenn.edu/fugowiki/index.php/ >> FunctionTerms ). >> >>>>>>>> >> >>>>>>>> Regardless, if you think you have function terms, please >> do submit. >> >>>>>>>> >> >>>>>>>> I would also like to schedule an initial meeting for >> those who were >> >>>>>>>> assigned to participate on the OBI-Function branch (right >> now, just >> >>>>>>>> Suzi L., Alan R., and myself). This week is problematic, >> since Alan >> >>>>>>>> is one of the prime presenters at this week's WWW 2007 >> meeting in >> >>>>>>>> Banff for a demo created by the W3C SemWeb Health Care/ >> Life Science >> >>>>>>>> Interest Group. Perhaps we can schedule for later in the >> week - or >> >>>>>>>> early next week? Suzi & Alan - please get back to me >> when you can >> >>>>>>>> with possible times. >> >>>>>>>> >> >>>>>>>> I'd also encourage anyone else who is interested to not >> be shy and >> >>>>>>>> join in the fun. Please just let me know when you'd be >> able to meet >> >>>>>>>> (late this week - or - early next week). >> >>>>>>>> >> >>>>>>>> Many thanks. >> >>>>>>>> >> >>>>>>>> Cheers, >> >>>>>>>> Bill >> >>>>>>>> >> >>>>>>>> >> >>>>>>>> Bill Bug >> >>>>>>>> Senior Research Analyst/Ontological Engineer >> >>>>>>>> >> >>>>>>>> Laboratory for Bioimaging & Anatomical Informatics >> >>>>>>>> www.neuroterrain.org >> >>>>>>>> Department of Neurobiology & Anatomy >> >>>>>>>> Drexel University College of Medicine >> >>>>>>>> 2900 Queen Lane >> >>>>>>>> Philadelphia, PA 19129 >> >>>>>>>> 215 991 8430 (ph) >> >>>>>>>> 610 457 0443 (mobile) >> >>>>>>>> 215 843 9367 (fax) >> >>>>>>>> >> >>>>>>>> >> >>>>>>>> Please Note: I now have a new email - >> Wil...@Dr... >> >>>>>>>> >> >>>>>>>> >> >>>>>>>> >> >>>>>>>> >> >>>>>>>> >> ---------------------------------------------------------------- >> >>>>>>>> --------- >> >>>>>>>> This SF.net email is sponsored by DB2 Express >> >>>>>>>> Download DB2 Express C - the FREE version of DB2 express >> and take >> >>>>>>>> control of your XML. No limits. Just data. Click to get >> it now. >> >>>>>>>> http://sourceforge.net/powerbar/db2/ >> >>>>>>>> _______________________________________________ >> >>>>>>>> Obi-function-branch mailing list >> >>>>>>>> Obi...@li... >> >>>>>>>> https://lists.sourceforge.net/lists/listinfo/obi-function- >> branch >> >>>>>>> >> >>>>>> >> >>>>>> Bill Bug >> >>>>>> Senior Research Analyst/Ontological Engineer >> >>>>>> >> >>>>>> Laboratory for Bioimaging & Anatomical Informatics >> >>>>>> www.neuroterrain.org >> >>>>>> Department of Neurobiology & Anatomy >> >>>>>> Drexel University College of Medicine >> >>>>>> 2900 Queen Lane >> >>>>>> Philadelphia, PA 19129 >> >>>>>> 215 991 8430 (ph) >> >>>>>> 610 457 0443 (mobile) >> >>>>>> 215 843 9367 (fax) >> >>>>>> >> >>>>>> >> >>>>>> Please Note: I now have a new email - >> Wil...@Dr... >> >>>>>> >> >>>>>> >> >>>>>> >> >>>>>> >> >>>>> >> >>>> >> >>> >> >>> Bill Bug >> >>> Senior Research Analyst/Ontological Engineer >> >>> >> >>> Laboratory for Bioimaging & Anatomical Informatics >> >>> www.neuroterrain.org >> >>> Department of Neurobiology & Anatomy >> >>> Drexel University College of Medicine >> >>> 2900 Queen Lane >> >>> Philadelphia, PA 19129 >> >>> 215 991 8430 (ph) >> >>> 610 457 0443 (mobile) >> >>> 215 843 9367 (fax) >> >>> >> >>> >> >>> Please Note: I now have a new email - Wil...@Dr... >> >>> >> >>> >> >>> >> >>> >> >> >> > >> > Bill Bug >> > Senior Research Analyst/Ontological Engineer >> > >> > Laboratory for Bioimaging & Anatomical Informatics >> > www.neuroterrain.org >> > Department of Neurobiology & Anatomy >> > Drexel University College of Medicine >> > 2900 Queen Lane >> > Philadelphia, PA 19129 >> > 215 991 8430 (ph) >> > 610 457 0443 (mobile) >> > 215 843 9367 (fax) >> > >> > >> > Please Note: I now have a new email - Wil...@Dr... >> > >> > >> > >> > >> > >> >> >> >> -- >> Thanks, >> Allyson :) >> >> Allyson Lister >> Research Associate >> Centre for Integrated Systems Biology for Ageing and Nutrition >> Newcastle University >> http://www.cisban.ac.uk >> School of Computing Science >> Newcastle University >> Newcastle upon Tyne, NE1 7RU > > Bill Bug > Senior Research Analyst/Ontological Engineer > > Laboratory for Bioimaging & Anatomical Informatics > www.neuroterrain.org > Department of Neurobiology & Anatomy > Drexel University College of Medicine > 2900 Queen Lane > Philadelphia, PA 19129 > 215 991 8430 (ph) > 610 457 0443 (mobile) > 215 843 9367 (fax) > > > Please Note: I now have a new email - Wil...@Dr... > > > > > > > > -- > Thanks, > Allyson :) > > Allyson Lister > Research Associate > Centre for Integrated Systems Biology for Ageing and Nutrition > Newcastle University > http://www.cisban.ac.uk > School of Computing Science > Newcastle University > Newcastle upon Tyne, NE1 7RU Bill Bug Senior Research Analyst/Ontological Engineer Laboratory for Bioimaging & Anatomical Informatics www.neuroterrain.org Department of Neurobiology & Anatomy Drexel University College of Medicine 2900 Queen Lane Philadelphia, PA 19129 215 991 8430 (ph) 610 457 0443 (mobile) 215 843 9367 (fax) Please Note: I now have a new email - Wil...@Dr... |
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From: William B. <Wil...@Dr...> - 2007-05-12 08:14:37
|
That's fine, Alan. I realize everyone is very busy right now. Time is slipping away, however. I'm going to say Monday - this Monday, May 14th at 11 AM EST (4 PM GMT/ 8 AM PDT) - and hope Suzi catches this email in time. Will this work for everyone else? If so, I'll expect to Skype everyone at that time. Remember - this is just an inaugural meeting to help define the tasks more fully and discuss some general issues related to function. I would remind everyone I placed some examples of OBI "functions" out on the Function Branch Wiki page, so it would be worth giving those a quick look if you can. They are at the bottom of the page (and are just proposed examples - they may not be completely BFO-compliant): https://www.cbil.upenn.edu/fugowiki/index.php/FunctionTerms Just as a reminder, everyone should subscribe to the obo-function- branch list email. I'll be certain to act more promptly to process post requests, but I'm assuming once we've all joined the list, I won't have to do this, unless some file attachment gums up the system. Cheers, Bill On May 11, 2007, at 12:00 PM, Alan Ruttenberg wrote: > Thursday I'm at the clinical ontology workshop, so can't. Following > week is much better. > -Alan > > On May 11, 2007, at 7:08 AM, Suzanna Lewis wrote: > >> Thursday at either 8 or 9 (Pacific) would be best for me. >> >> I've got calls at those same times already on Tu & We, and Friday >> I'm on a plane. >> Monday is also a possibility, but I tend to neglect to look at my >> calendar until I'm already in at work... >> >> -S >> >> On May 10, 2007, at 5:59 PM, William Bug wrote: >> >>> Great. >>> >>> Thank you both. >>> >>> So - Helen, Alan, and Suzi - is there a time next week when we >>> could have our first meeting? >>> >>> Given we are spread across time zones from GMT to PDT, I expect >>> the two options we have are: >>> 11 AM EST (4 PM GMT - 8 AM PDT) >>> 12 PM EST (5 PM GMT -9 AM PDT) >>> >>> Given we are scraping the extremes of GMT & PDT here, I'd defer >>> to Suzi & Helen as to which will work best for you both. >>> >>> Right now, I have this slot available Mon, Tues, & Fri next week. >>> >>> What will work best for everyone else? >>> >>> Many thanks for helping to get the OBI-Function branch off to a >>> swinging start! ;-) >>> >>> Cheers, >>> Bill >>> >>> On May 10, 2007, at 10:24 AM, Chris Stoeckert wrote: >>> >>>> Hi Bill, >>>> Helen Causton has kindly agreed to join the Function branch as >>>> editor and represent the transcriptomics community. >>>> Cheers, >>>> Chris >>>> >>>> On May 6, 2007, at 4:12 PM, William Bug wrote: >>>> >>>>> Hi All, >>>>> >>>>> Well - the OBI-Function branch list has been noticeably silent >>>>> since its launch a few weeks back. >>>>> >>>>> We've not yet received any "function" term lists beyond the >>>>> original list of flow cytometry terms provide by Ryan back in >>>>> late March. For those who may have terms on hand and think >>>>> they are appropriate for the function branch, I urge you to >>>>> review the examples on the OBI-Function Branch Wiki page for >>>>> additional guidance (https://www.cbil.upenn.edu/fugowiki/ >>>>> index.php/FunctionTerms). >>>>> >>>>> Regardless, if you think you have function terms, please do >>>>> submit. >>>>> >>>>> I would also like to schedule an initial meeting for those who >>>>> were assigned to participate on the OBI-Function branch (right >>>>> now, just Suzi L., Alan R., and myself). This week is >>>>> problematic, since Alan is one of the prime presenters at this >>>>> week's WWW 2007 meeting in Banff for a demo created by the W3C >>>>> SemWeb Health Care/Life Science Interest Group. Perhaps we can >>>>> schedule for later in the week - or early next week? Suzi & >>>>> Alan - please get back to me when you can with possible times. >>>>> >>>>> I'd also encourage anyone else who is interested to not be shy >>>>> and join in the fun. Please just let me know when you'd be >>>>> able to meet (late this week - or - early next week). >>>>> >>>>> Many thanks. >>>>> >>>>> Cheers, >>>>> Bill >>>>> >>>>> >>>>> Bill Bug >>>>> Senior Research Analyst/Ontological Engineer >>>>> >>>>> Laboratory for Bioimaging & Anatomical Informatics >>>>> www.neuroterrain.org >>>>> Department of Neurobiology & Anatomy >>>>> Drexel University College of Medicine >>>>> 2900 Queen Lane >>>>> Philadelphia, PA 19129 >>>>> 215 991 8430 (ph) >>>>> 610 457 0443 (mobile) >>>>> 215 843 9367 (fax) >>>>> >>>>> >>>>> Please Note: I now have a new email - Wil...@Dr... >>>>> >>>>> >>>>> >>>>> >>>>> ------------------------------------------------------------------ >>>>> ------- >>>>> This SF.net email is sponsored by DB2 Express >>>>> Download DB2 Express C - the FREE version of DB2 express and take >>>>> control of your XML. No limits. Just data. Click to get it now. >>>>> http://sourceforge.net/powerbar/db2/ >>>>> _______________________________________________ >>>>> Obi-function-branch mailing list >>>>> Obi...@li... >>>>> https://lists.sourceforge.net/lists/listinfo/obi-function-branch >>>> >>> >>> Bill Bug >>> Senior Research Analyst/Ontological Engineer >>> >>> Laboratory for Bioimaging & Anatomical Informatics >>> www.neuroterrain.org >>> Department of Neurobiology & Anatomy >>> Drexel University College of Medicine >>> 2900 Queen Lane >>> Philadelphia, PA 19129 >>> 215 991 8430 (ph) >>> 610 457 0443 (mobile) >>> 215 843 9367 (fax) >>> >>> >>> Please Note: I now have a new email - Wil...@Dr... >>> >>> >>> >>> >> > Bill Bug Senior Research Analyst/Ontological Engineer Laboratory for Bioimaging & Anatomical Informatics www.neuroterrain.org Department of Neurobiology & Anatomy Drexel University College of Medicine 2900 Queen Lane Philadelphia, PA 19129 215 991 8430 (ph) 610 457 0443 (mobile) 215 843 9367 (fax) Please Note: I now have a new email - Wil...@Dr... |
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From: Alan R. <ala...@gm...> - 2007-05-11 15:58:41
|
Thursday I'm at the clinical ontology workshop, so can't. Following week is much better. -Alan On May 11, 2007, at 7:08 AM, Suzanna Lewis wrote: > Thursday at either 8 or 9 (Pacific) would be best for me. > > I've got calls at those same times already on Tu & We, and Friday > I'm on a plane. > Monday is also a possibility, but I tend to neglect to look at my > calendar until I'm already in at work... > > -S > > On May 10, 2007, at 5:59 PM, William Bug wrote: > >> Great. >> >> Thank you both. >> >> So - Helen, Alan, and Suzi - is there a time next week when we >> could have our first meeting? >> >> Given we are spread across time zones from GMT to PDT, I expect >> the two options we have are: >> 11 AM EST (4 PM GMT - 8 AM PDT) >> 12 PM EST (5 PM GMT -9 AM PDT) >> >> Given we are scraping the extremes of GMT & PDT here, I'd defer to >> Suzi & Helen as to which will work best for you both. >> >> Right now, I have this slot available Mon, Tues, & Fri next week. >> >> What will work best for everyone else? >> >> Many thanks for helping to get the OBI-Function branch off to a >> swinging start! ;-) >> >> Cheers, >> Bill >> >> On May 10, 2007, at 10:24 AM, Chris Stoeckert wrote: >> >>> Hi Bill, >>> Helen Causton has kindly agreed to join the Function branch as >>> editor and represent the transcriptomics community. >>> Cheers, >>> Chris >>> >>> On May 6, 2007, at 4:12 PM, William Bug wrote: >>> >>>> Hi All, >>>> >>>> Well - the OBI-Function branch list has been noticeably silent >>>> since its launch a few weeks back. >>>> >>>> We've not yet received any "function" term lists beyond the >>>> original list of flow cytometry terms provide by Ryan back in >>>> late March. For those who may have terms on hand and think they >>>> are appropriate for the function branch, I urge you to review >>>> the examples on the OBI-Function Branch Wiki page for additional >>>> guidance (https://www.cbil.upenn.edu/fugowiki/index.php/ >>>> FunctionTerms). >>>> >>>> Regardless, if you think you have function terms, please do submit. >>>> >>>> I would also like to schedule an initial meeting for those who >>>> were assigned to participate on the OBI-Function branch (right >>>> now, just Suzi L., Alan R., and myself). This week is >>>> problematic, since Alan is one of the prime presenters at this >>>> week's WWW 2007 meeting in Banff for a demo created by the W3C >>>> SemWeb Health Care/Life Science Interest Group. Perhaps we can >>>> schedule for later in the week - or early next week? Suzi & >>>> Alan - please get back to me when you can with possible times. >>>> >>>> I'd also encourage anyone else who is interested to not be shy >>>> and join in the fun. Please just let me know when you'd be able >>>> to meet (late this week - or - early next week). >>>> >>>> Many thanks. >>>> >>>> Cheers, >>>> Bill >>>> >>>> >>>> Bill Bug >>>> Senior Research Analyst/Ontological Engineer >>>> >>>> Laboratory for Bioimaging & Anatomical Informatics >>>> www.neuroterrain.org >>>> Department of Neurobiology & Anatomy >>>> Drexel University College of Medicine >>>> 2900 Queen Lane >>>> Philadelphia, PA 19129 >>>> 215 991 8430 (ph) >>>> 610 457 0443 (mobile) >>>> 215 843 9367 (fax) >>>> >>>> >>>> Please Note: I now have a new email - Wil...@Dr... >>>> >>>> >>>> >>>> >>>> ------------------------------------------------------------------- >>>> ------ >>>> This SF.net email is sponsored by DB2 Express >>>> Download DB2 Express C - the FREE version of DB2 express and take >>>> control of your XML. No limits. Just data. Click to get it now. >>>> http://sourceforge.net/powerbar/db2/ >>>> _______________________________________________ >>>> Obi-function-branch mailing list >>>> Obi...@li... >>>> https://lists.sourceforge.net/lists/listinfo/obi-function-branch >>> >> >> Bill Bug >> Senior Research Analyst/Ontological Engineer >> >> Laboratory for Bioimaging & Anatomical Informatics >> www.neuroterrain.org >> Department of Neurobiology & Anatomy >> Drexel University College of Medicine >> 2900 Queen Lane >> Philadelphia, PA 19129 >> 215 991 8430 (ph) >> 610 457 0443 (mobile) >> 215 843 9367 (fax) >> >> >> Please Note: I now have a new email - Wil...@Dr... >> >> >> >> > |
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From: Suzanna L. <su...@be...> - 2007-05-11 13:08:39
|
Thursday at either 8 or 9 (Pacific) would be best for me. I've got calls at those same times already on Tu & We, and Friday I'm on a plane. Monday is also a possibility, but I tend to neglect to look at my calendar until I'm already in at work... -S On May 10, 2007, at 5:59 PM, William Bug wrote: > Great. > > Thank you both. > > So - Helen, Alan, and Suzi - is there a time next week when we > could have our first meeting? > > Given we are spread across time zones from GMT to PDT, I expect the > two options we have are: > 11 AM EST (4 PM GMT - 8 AM PDT) > 12 PM EST (5 PM GMT -9 AM PDT) > > Given we are scraping the extremes of GMT & PDT here, I'd defer to > Suzi & Helen as to which will work best for you both. > > Right now, I have this slot available Mon, Tues, & Fri next week. > > What will work best for everyone else? > > Many thanks for helping to get the OBI-Function branch off to a > swinging start! ;-) > > Cheers, > Bill > > On May 10, 2007, at 10:24 AM, Chris Stoeckert wrote: > >> Hi Bill, >> Helen Causton has kindly agreed to join the Function branch as >> editor and represent the transcriptomics community. >> Cheers, >> Chris >> >> On May 6, 2007, at 4:12 PM, William Bug wrote: >> >>> Hi All, >>> >>> Well - the OBI-Function branch list has been noticeably silent >>> since its launch a few weeks back. >>> >>> We've not yet received any "function" term lists beyond the >>> original list of flow cytometry terms provide by Ryan back in >>> late March. For those who may have terms on hand and think they >>> are appropriate for the function branch, I urge you to review the >>> examples on the OBI-Function Branch Wiki page for additional >>> guidance (https://www.cbil.upenn.edu/fugowiki/index.php/ >>> FunctionTerms). >>> >>> Regardless, if you think you have function terms, please do submit. >>> >>> I would also like to schedule an initial meeting for those who >>> were assigned to participate on the OBI-Function branch (right >>> now, just Suzi L., Alan R., and myself). This week is >>> problematic, since Alan is one of the prime presenters at this >>> week's WWW 2007 meeting in Banff for a demo created by the W3C >>> SemWeb Health Care/Life Science Interest Group. Perhaps we can >>> schedule for later in the week - or early next week? Suzi & Alan >>> - please get back to me when you can with possible times. >>> >>> I'd also encourage anyone else who is interested to not be shy >>> and join in the fun. Please just let me know when you'd be able >>> to meet (late this week - or - early next week). >>> >>> Many thanks. >>> >>> Cheers, >>> Bill >>> >>> >>> Bill Bug >>> Senior Research Analyst/Ontological Engineer >>> >>> Laboratory for Bioimaging & Anatomical Informatics >>> www.neuroterrain.org >>> Department of Neurobiology & Anatomy >>> Drexel University College of Medicine >>> 2900 Queen Lane >>> Philadelphia, PA 19129 >>> 215 991 8430 (ph) >>> 610 457 0443 (mobile) >>> 215 843 9367 (fax) >>> >>> >>> Please Note: I now have a new email - Wil...@Dr... >>> >>> >>> >>> >>> -------------------------------------------------------------------- >>> ----- >>> This SF.net email is sponsored by DB2 Express >>> Download DB2 Express C - the FREE version of DB2 express and take >>> control of your XML. No limits. Just data. Click to get it now. >>> http://sourceforge.net/powerbar/db2/ >>> _______________________________________________ >>> Obi-function-branch mailing list >>> Obi...@li... >>> https://lists.sourceforge.net/lists/listinfo/obi-function-branch >> > > Bill Bug > Senior Research Analyst/Ontological Engineer > > Laboratory for Bioimaging & Anatomical Informatics > www.neuroterrain.org > Department of Neurobiology & Anatomy > Drexel University College of Medicine > 2900 Queen Lane > Philadelphia, PA 19129 > 215 991 8430 (ph) > 610 457 0443 (mobile) > 215 843 9367 (fax) > > > Please Note: I now have a new email - Wil...@Dr... > > > > |
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From: William B. <Wil...@Dr...> - 2007-05-10 21:56:38
|
Great. Thank you both. So - Helen, Alan, and Suzi - is there a time next week when we could have our first meeting? Given we are spread across time zones from GMT to PDT, I expect the two options we have are: 11 AM EST (4 PM GMT - 8 AM PDT) 12 PM EST (5 PM GMT -9 AM PDT) Given we are scraping the extremes of GMT & PDT here, I'd defer to Suzi & Helen as to which will work best for you both. Right now, I have this slot available Mon, Tues, & Fri next week. What will work best for everyone else? Many thanks for helping to get the OBI-Function branch off to a swinging start! ;-) Cheers, Bill On May 10, 2007, at 10:24 AM, Chris Stoeckert wrote: > Hi Bill, > Helen Causton has kindly agreed to join the Function branch as > editor and represent the transcriptomics community. > Cheers, > Chris > > On May 6, 2007, at 4:12 PM, William Bug wrote: > >> Hi All, >> >> Well - the OBI-Function branch list has been noticeably silent >> since its launch a few weeks back. >> >> We've not yet received any "function" term lists beyond the >> original list of flow cytometry terms provide by Ryan back in late >> March. For those who may have terms on hand and think they are >> appropriate for the function branch, I urge you to review the >> examples on the OBI-Function Branch Wiki page for additional >> guidance (https://www.cbil.upenn.edu/fugowiki/index.php/ >> FunctionTerms). >> >> Regardless, if you think you have function terms, please do submit. >> >> I would also like to schedule an initial meeting for those who >> were assigned to participate on the OBI-Function branch (right >> now, just Suzi L., Alan R., and myself). This week is >> problematic, since Alan is one of the prime presenters at this >> week's WWW 2007 meeting in Banff for a demo created by the W3C >> SemWeb Health Care/Life Science Interest Group. Perhaps we can >> schedule for later in the week - or early next week? Suzi & Alan >> - please get back to me when you can with possible times. >> >> I'd also encourage anyone else who is interested to not be shy and >> join in the fun. Please just let me know when you'd be able to >> meet (late this week - or - early next week). >> >> Many thanks. >> >> Cheers, >> Bill >> >> >> Bill Bug >> Senior Research Analyst/Ontological Engineer >> >> Laboratory for Bioimaging & Anatomical Informatics >> www.neuroterrain.org >> Department of Neurobiology & Anatomy >> Drexel University College of Medicine >> 2900 Queen Lane >> Philadelphia, PA 19129 >> 215 991 8430 (ph) >> 610 457 0443 (mobile) >> 215 843 9367 (fax) >> >> >> Please Note: I now have a new email - Wil...@Dr... >> >> >> >> >> --------------------------------------------------------------------- >> ---- >> This SF.net email is sponsored by DB2 Express >> Download DB2 Express C - the FREE version of DB2 express and take >> control of your XML. No limits. Just data. Click to get it now. >> http://sourceforge.net/powerbar/db2/ >> _______________________________________________ >> Obi-function-branch mailing list >> Obi...@li... >> https://lists.sourceforge.net/lists/listinfo/obi-function-branch > Bill Bug Senior Research Analyst/Ontological Engineer Laboratory for Bioimaging & Anatomical Informatics www.neuroterrain.org Department of Neurobiology & Anatomy Drexel University College of Medicine 2900 Queen Lane Philadelphia, PA 19129 215 991 8430 (ph) 610 457 0443 (mobile) 215 843 9367 (fax) Please Note: I now have a new email - Wil...@Dr... |
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From: Chris S. <sto...@pc...> - 2007-05-10 14:25:02
|
Hi Bill, Helen Causton has kindly agreed to join the Function branch as editor and represent the transcriptomics community. Cheers, Chris On May 6, 2007, at 4:12 PM, William Bug wrote: > Hi All, > > Well - the OBI-Function branch list has been noticeably silent > since its launch a few weeks back. > > We've not yet received any "function" term lists beyond the > original list of flow cytometry terms provide by Ryan back in late > March. For those who may have terms on hand and think they are > appropriate for the function branch, I urge you to review the > examples on the OBI-Function Branch Wiki page for additional > guidance (https://www.cbil.upenn.edu/fugowiki/index.php/ > FunctionTerms). > > Regardless, if you think you have function terms, please do submit. > > I would also like to schedule an initial meeting for those who were > assigned to participate on the OBI-Function branch (right now, just > Suzi L., Alan R., and myself). This week is problematic, since > Alan is one of the prime presenters at this week's WWW 2007 meeting > in Banff for a demo created by the W3C SemWeb Health Care/Life > Science Interest Group. Perhaps we can schedule for later in the > week - or early next week? Suzi & Alan - please get back to me > when you can with possible times. > > I'd also encourage anyone else who is interested to not be shy and > join in the fun. Please just let me know when you'd be able to > meet (late this week - or - early next week). > > Many thanks. > > Cheers, > Bill > > > Bill Bug > Senior Research Analyst/Ontological Engineer > > Laboratory for Bioimaging & Anatomical Informatics > www.neuroterrain.org > Department of Neurobiology & Anatomy > Drexel University College of Medicine > 2900 Queen Lane > Philadelphia, PA 19129 > 215 991 8430 (ph) > 610 457 0443 (mobile) > 215 843 9367 (fax) > > > Please Note: I now have a new email - Wil...@Dr... > > > > > ---------------------------------------------------------------------- > --- > This SF.net email is sponsored by DB2 Express > Download DB2 Express C - the FREE version of DB2 express and take > control of your XML. No limits. Just data. Click to get it now. > http://sourceforge.net/powerbar/db2/ > _______________________________________________ > Obi-function-branch mailing list > Obi...@li... > https://lists.sourceforge.net/lists/listinfo/obi-function-branch |
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From: William B. <Wil...@Dr...> - 2007-05-06 20:12:25
|
Hi All, Well - the OBI-Function branch list has been noticeably silent since its launch a few weeks back. We've not yet received any "function" term lists beyond the original list of flow cytometry terms provide by Ryan back in late March. For those who may have terms on hand and think they are appropriate for the function branch, I urge you to review the examples on the OBI- Function Branch Wiki page for additional guidance (https:// www.cbil.upenn.edu/fugowiki/index.php/FunctionTerms). Regardless, if you think you have function terms, please do submit. I would also like to schedule an initial meeting for those who were assigned to participate on the OBI-Function branch (right now, just Suzi L., Alan R., and myself). This week is problematic, since Alan is one of the prime presenters at this week's WWW 2007 meeting in Banff for a demo created by the W3C SemWeb Health Care/Life Science Interest Group. Perhaps we can schedule for later in the week - or early next week? Suzi & Alan - please get back to me when you can with possible times. I'd also encourage anyone else who is interested to not be shy and join in the fun. Please just let me know when you'd be able to meet (late this week - or - early next week). Many thanks. Cheers, Bill Bill Bug Senior Research Analyst/Ontological Engineer Laboratory for Bioimaging & Anatomical Informatics www.neuroterrain.org Department of Neurobiology & Anatomy Drexel University College of Medicine 2900 Queen Lane Philadelphia, PA 19129 215 991 8430 (ph) 610 457 0443 (mobile) 215 843 9367 (fax) Please Note: I now have a new email - Wil...@Dr... |
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From: William B. <Wil...@dr...> - 2007-04-24 23:39:47
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Hi All, Welcome to the OBI Function branch! This branch has an official OBI Wiki page: https://www.cbil.upenn.edu/fugowiki/index.php/FunctionTerms This page contains a general description of: - OBI Function branch scope and goals - some OBI Function examples; - a listing of the Function branch Teleconf. minutes (no TCons have been held, yet); - function terms posted by OBI participating communities; - etc. Some of the function terms being used to "prime" this effort are functions defined in the FuGO functional genomics ontology and the GO- Biological Function branch. The current OBI participants committed to working on soliciting, reviewing, and mapping function terms relevant to OBI are: Suzanna Lewis (OBI Advisor and GO PI) Alan Ruttenberg (OBI developer) Bill Bug (OBI developer and CC member) Currently Bill Bug is coordinating the OBI Function branch efforts. We ask that OBI participating communities post lists of their function terms to the Wiki page cited above. We are looking to hold an inaugural TCon in the next few weeks, so we specifically that communities try to post their terms by the end of the first week in May (2 weeks from now), so that there will be some content available for review at this meeting. To date, only Ryan Brinkman from the Flow Cytometry community have provided a list of function terms for review. Many thanks for your participation and cooperation in moving this important effort forward. Cheers, Bill Bug Bill Bug Senior Research Analyst/Ontological Engineer Laboratory for Bioimaging & Anatomical Informatics www.neuroterrain.org Department of Neurobiology & Anatomy Drexel University College of Medicine 2900 Queen Lane Philadelphia, PA 19129 215 991 8430 (ph) 610 457 0443 (mobile) 215 843 9367 (fax) Please Note: I now have a new email - Wil...@Dr... |
