You can subscribe to this list here.
| 2006 |
Jan
|
Feb
|
Mar
|
Apr
|
May
|
Jun
|
Jul
|
Aug
|
Sep
|
Oct
(19) |
Nov
(50) |
Dec
(28) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 2007 |
Jan
(124) |
Feb
(144) |
Mar
(192) |
Apr
(110) |
May
(80) |
Jun
(131) |
Jul
(235) |
Aug
(84) |
Sep
(59) |
Oct
(65) |
Nov
(148) |
Dec
(202) |
| 2008 |
Jan
(142) |
Feb
(96) |
Mar
(62) |
Apr
(99) |
May
(150) |
Jun
(97) |
Jul
(66) |
Aug
(38) |
Sep
(62) |
Oct
(98) |
Nov
(56) |
Dec
(70) |
| 2009 |
Jan
(93) |
Feb
(86) |
Mar
(167) |
Apr
(116) |
May
(147) |
Jun
(79) |
Jul
(297) |
Aug
(251) |
Sep
(230) |
Oct
(487) |
Nov
(352) |
Dec
(160) |
| 2010 |
Jan
(128) |
Feb
(152) |
Mar
(234) |
Apr
(172) |
May
(179) |
Jun
(60) |
Jul
(83) |
Aug
(154) |
Sep
(92) |
Oct
(78) |
Nov
(93) |
Dec
(51) |
| 2011 |
Jan
(36) |
Feb
(106) |
Mar
(108) |
Apr
(94) |
May
(105) |
Jun
(59) |
Jul
(96) |
Aug
(108) |
Sep
(114) |
Oct
(82) |
Nov
(103) |
Dec
(89) |
| 2012 |
Jan
(59) |
Feb
(47) |
Mar
(77) |
Apr
(67) |
May
(109) |
Jun
(120) |
Jul
(92) |
Aug
(39) |
Sep
(52) |
Oct
(41) |
Nov
(71) |
Dec
(48) |
| 2013 |
Jan
(35) |
Feb
(47) |
Mar
(137) |
Apr
(88) |
May
(96) |
Jun
(113) |
Jul
(31) |
Aug
(22) |
Sep
(51) |
Oct
(66) |
Nov
(61) |
Dec
(35) |
| 2014 |
Jan
(38) |
Feb
(42) |
Mar
(115) |
Apr
(67) |
May
(31) |
Jun
(76) |
Jul
(50) |
Aug
(13) |
Sep
(47) |
Oct
(26) |
Nov
(29) |
Dec
(26) |
| 2015 |
Jan
(14) |
Feb
(41) |
Mar
(32) |
Apr
(24) |
May
(61) |
Jun
(19) |
Jul
(48) |
Aug
(57) |
Sep
(24) |
Oct
(42) |
Nov
(24) |
Dec
(25) |
| 2016 |
Jan
(69) |
Feb
(43) |
Mar
(22) |
Apr
(59) |
May
(58) |
Jun
(52) |
Jul
(33) |
Aug
(21) |
Sep
(25) |
Oct
(31) |
Nov
(19) |
Dec
(23) |
| 2017 |
Jan
(38) |
Feb
(39) |
Mar
(20) |
Apr
(10) |
May
(13) |
Jun
(20) |
Jul
(19) |
Aug
(14) |
Sep
(9) |
Oct
(8) |
Nov
(12) |
Dec
(2) |
| 2018 |
Jan
(3) |
Feb
(8) |
Mar
(4) |
Apr
(3) |
May
(7) |
Jun
(16) |
Jul
(1) |
Aug
(6) |
Sep
(11) |
Oct
(4) |
Nov
(6) |
Dec
(9) |
| 2019 |
Jan
(5) |
Feb
(8) |
Mar
(8) |
Apr
(26) |
May
(4) |
Jun
(6) |
Jul
(4) |
Aug
(6) |
Sep
(5) |
Oct
(4) |
Nov
(3) |
Dec
(3) |
| 2020 |
Jan
(7) |
Feb
(6) |
Mar
(16) |
Apr
(9) |
May
(12) |
Jun
(12) |
Jul
(13) |
Aug
(10) |
Sep
(6) |
Oct
(10) |
Nov
(5) |
Dec
(4) |
| 2021 |
Jan
(8) |
Feb
(1) |
Mar
(8) |
Apr
(11) |
May
(5) |
Jun
(9) |
Jul
(6) |
Aug
(10) |
Sep
(7) |
Oct
(20) |
Nov
(15) |
Dec
(7) |
| 2022 |
Jan
(14) |
Feb
(5) |
Mar
(8) |
Apr
(20) |
May
(9) |
Jun
(7) |
Jul
(4) |
Aug
(7) |
Sep
(4) |
Oct
(4) |
Nov
(8) |
Dec
(6) |
| 2023 |
Jan
(4) |
Feb
(5) |
Mar
(7) |
Apr
(6) |
May
(8) |
Jun
(11) |
Jul
(8) |
Aug
(6) |
Sep
(7) |
Oct
(6) |
Nov
(4) |
Dec
(2) |
| 2024 |
Jan
(6) |
Feb
(4) |
Mar
(5) |
Apr
(5) |
May
(9) |
Jun
(8) |
Jul
(8) |
Aug
(8) |
Sep
(3) |
Oct
(7) |
Nov
(4) |
Dec
(11) |
| 2025 |
Jan
(7) |
Feb
(5) |
Mar
(7) |
Apr
(16) |
May
(10) |
Jun
(8) |
Jul
(7) |
Aug
(5) |
Sep
(2) |
Oct
(3) |
Nov
(5) |
Dec
(2) |
|
From: Michelle G. <mg...@so...> - 2025-12-08 16:42:00
|
Hi All, I’ll be chairing the call this week. Agenda: 1. Mark’s item (in the notes doc<https://docs.google.com/document/d/1eEutJAG56gncTsWf2sAqHa4a9pQAuCbhsg_kmbF78tw/edit?usp=sharing>) 2. Continue issues related to sequencing term reorg Call details: - Monday, noon Eastern Time, 9 AM Pacific Time, for one hour - Zoom link: https://us02web.zoom.us/j/82952846229?pwd=UXkwZ3RmU1VZUEM3bDlNS1RsSzNzdz09 Meeting ID: 829 5284 6229 Passcode: 535959 Best, Michelle |
|
From: Michelle G. <mg...@so...> - 2025-12-01 10:47:24
|
Hi All, I’ll be chairing the call this week. We will continue review of the RNA-seq term reorganization and there is also an item that Mark requested be discussed. Call details: - Monday, noon Eastern Time, 9 AM Pacific Time, for one hour - Zoom link: https://us02web.zoom.us/j/82952846229?pwd=UXkwZ3RmU1VZUEM3bDlNS1RsSzNzdz09 Meeting ID: 829 5284 6229 Passcode: 535959 Agenda: 1. Mark’s item (in the notes doc<https://docs.google.com/document/d/1eEutJAG56gncTsWf2sAqHa4a9pQAuCbhsg_kmbF78tw/edit?usp=sharing>) 2. Review process of building assay template for RNAseq reorg 3. Specific questions in reorg template<https://docs.google.com/spreadsheets/d/1Gg7mmwJNhrOaQSlyUO-fzoxRYZErzZiUsHARzHOK7G4/edit?usp=sharing> * Review patch-see - row 35 * How to merge a term - row 20 * Column for link to GitHub issue 4. Translation profiling terms - rows 41, 42 5. Spatial transcriptomics - * Line 21 in template - ’slide-seq' * Should 'spatial transcriptome profiling' be a child of ’transcription profiling’? Wouldn’t be consistent with other terms at that level. * Could alternatively have a 'spatial transcription profiling by RNA sequencing assay’ term plus spatial children for the other transcription profiling terms? But that is cumbersome and there will be many multimodal terms. * Several other terms: DARTFISH, GeoMx 6. RNA bind and seq - row 17 in the template Best, Michelle |
|
From: Bjoern P. <bp...@lj...> - 2025-11-24 05:17:43
|
Hey everyone, I'm chairing the OBI developer call this week. I would like to go through the possible implications of the last COB call, regarding integrating processed cell terms into OBI. Open to all other suggestions, and we will use the remaining time for open pull requests / issues. - Bjoern Call details: - Monday, noon Eastern Time, 9 AM Pacific Time, for one hour - Zoom link: https://us02web.zoom.us/j/82952846229?pwd=UXkwZ3RmU1VZUEM3bDlNS1RsSzNzdz09 Meeting ID: 829 5284 6229 Passcode: 535959 - Agenda https://docs.google.com/document/d/1eEutJAG56gncTsWf2sAqHa4a9pQAuCbhsg_kmbF78tw - OBI Pull Requests https://github.com/obi-ontology/obi/pulls - OBI Issues https://github.com/obi-ontology/obi/issues - Alternate OBI Issues link, sorted by ‘thumbs-up’: https://github.com/obi-ontology/obi/issues?q=is%3Aissue+is%3Aopen+sort%3Areactions-%2B1-desc -- Bjoern Peters Professor La Jolla Institute for Immunology 9420 Athena Circle La Jolla, CA 92037, USA https://www.lji.org/labs/peters-lab/ <http://www.liai.org/pages/faculty-peters> |
|
From: Sebastian D. <sdu...@lj...> - 2025-11-14 23:14:42
|
Hi everyone, I'm chairing the OBI developer call this week. I'll be discussing the OBI-COB transition PR. If there's any time remaining, I will lead a review of open pull requests and issues. Best, Sebastian Call details: - Monday, noon Eastern Time, 9 AM Pacific Time, for one hour - Zoom link: https://us02web.zoom.us/j/82952846229?pwd=UXkwZ3RmU1VZUEM3bDlNS1RsSzNzdz09 Meeting ID: 829 5284 6229 Passcode: 535959 - Agenda https://docs.google.com/document/d/1eEutJAG56gncTsWf2sAqHa4a9pQAuCbhsg_kmbF78tw - OBI Pull Requests https://github.com/obi-ontology/obi/pulls - OBI Issues https://github.com/obi-ontology/obi/issues - Alternate OBI Issues link, sorted by ‘thumbs-up’: https://github.com/obi-ontology/obi/issues?q=is%3Aissue+is%3Aopen+sort%3Areactions-%2B1-desc |
|
From: Sebastian D. <sdu...@lj...> - 2025-11-10 17:57:17
|
Hi everyone, Due to low turnout at the meeting today, the discussion of the OBI-COB transition PR is being pushed to next week's call (2025-11-17). We hope that those interested in COB adoption (either in OBI or in other ontologies) will be able to attend next week. Best, Sebastian Call details: - Monday, noon Eastern Time, 9 AM Pacific Time, for one hour - Zoom link: https://us02web.zoom.us/j/82952846229?pwd=UXkwZ3RmU1VZUEM3bDlNS1RsSzNzdz09 Meeting ID: 829 5284 6229 Passcode: 535959 - Agenda https://docs.google.com/document/d/1eEutJAG56gncTsWf2sAqHa4a9pQAuCbhsg_kmbF78tw - OBI Pull Requests https://github.com/obi-ontology/obi/pulls - OBI Issues https://github.com/obi-ontology/obi/issues - Alternate OBI Issues link, sorted by ‘thumbs-up’: https://github.com/obi-ontology/obi/issues?q=is%3Aissue+is%3Aopen+sort%3Areactions-%2B1-desc On Fri, Nov 7, 2025 at 4:05 PM Sebastian Duesing <sdu...@lj...> wrote: > Hi everyone, > > I'm chairing the OBI developer call this week. I'd like to discuss the > OBI-COB transition PR <https://github.com/obi-ontology/obi/pull/1921>. > If there's any time remaining, I will lead a review of open pull requests > and issues. > > Best, > > Sebastian > > Call details: > - Monday, noon Eastern Time, 9 AM Pacific Time, for one hour > - Zoom link: > https://us02web.zoom.us/j/82952846229?pwd=UXkwZ3RmU1VZUEM3bDlNS1RsSzNzdz09 > Meeting ID: 829 5284 6229 > Passcode: 535959 > - Agenda > https://docs.google.com/document/d/1eEutJAG56gncTsWf2sAqHa4a9pQAuCbhsg_kmbF78tw > - OBI Pull Requests https://github.com/obi-ontology/obi/pulls > - OBI Issues https://github.com/obi-ontology/obi/issues > - Alternate OBI Issues link, sorted by ‘thumbs-up’: > https://github.com/obi-ontology/obi/issues?q=is%3Aissue+is%3Aopen+sort%3Areactions-%2B1-desc > > |
|
From: Sebastian D. <sdu...@lj...> - 2025-11-07 21:32:45
|
Hi everyone, I'm chairing the OBI developer call this week. I'd like to discuss the OBI-COB transition PR <https://github.com/obi-ontology/obi/pull/1921>. If there's any time remaining, I will lead a review of open pull requests and issues. Best, Sebastian Call details: - Monday, noon Eastern Time, 9 AM Pacific Time, for one hour - Zoom link: https://us02web.zoom.us/j/82952846229?pwd=UXkwZ3RmU1VZUEM3bDlNS1RsSzNzdz09 Meeting ID: 829 5284 6229 Passcode: 535959 - Agenda https://docs.google.com/document/d/1eEutJAG56gncTsWf2sAqHa4a9pQAuCbhsg_kmbF78tw - OBI Pull Requests https://github.com/obi-ontology/obi/pulls - OBI Issues https://github.com/obi-ontology/obi/issues - Alternate OBI Issues link, sorted by ‘thumbs-up’: https://github.com/obi-ontology/obi/issues?q=is%3Aissue+is%3Aopen+sort%3Areactions-%2B1-desc |
|
From: Damion D. <dam...@sf...> - 2025-11-02 21:23:25
|
I'm chairing the OBI developer call this week. I will be discussing FoodOn Recipe 2.0 model with respect to planned process, material processing, and a concept of reference materials. Call details: - Monday, noon Eastern Time, 9 AM Pacific Time, for one hour - Zoom link: https://us02web.zoom.us/j/82952846229?pwd=UXkwZ3RmU1VZUEM3bDlNS1RsSzNzdz09 Meeting ID: 829 5284 6229 Passcode: 535959 - Agenda https://docs.google.com/document/d/1eEutJAG56gncTsWf2sAqHa4a9pQAuCbhsg_kmbF78tw - OBI Pull Requests https://github.com/obi-ontology/obi/pulls - OBI Issues https://github.com/obi-ontology/obi/issues - Alternate OBI Issues link, sorted by ‘thumbs-up’: https://github.com/obi-ontology/obi/issues?q=is%3Aissue+is%3Aopen+sort%3Areactions-%2B1-desc Damion Dooley, Ontology Development Lead Centre for Infectious Disease Genomics and One Health Faculty of Health Sciences, SFU, Canada Mobile 778-688-0049 |
|
From: James A. O. <ja...@ov...> - 2025-10-24 18:03:47
|
Hi everyone, A new OBI release is available: - Versioned OWL: http://purl.obolibrary.org/obo/obi/2025-10-14/obi.owl - Notes: https://github.com/obi-ontology/obi/releases/tag/v2025-10-14 - Branch: https://github.com/obi-ontology/obi/tree/v2025-10-14 Please see the notes for changes. Best, James |
|
From: Sebastian D. <sdu...@lj...> - 2025-10-14 16:31:22
|
Hi everyone, A new OBI release candidate is available: - Pull Request: https://github.com/obi-ontology/obi/pull/1919 - Main OWL: https://raw.githubusercontent.com/obi-ontology/obi/rc-2025-10-14/obi.owl Please review it and comment on the PR if you see any problems. We will make a release decision in one week. Best, Sebastian |
|
From: Bjoern P. <bp...@lj...> - 2025-10-06 15:14:46
|
Hi everyone, I'm chairing the OBI developer call in an hour. I just finished grant writing and missed the last calls, so I am unprepared, and open to topic suggestions. Otherwise I will go through open pull requests and issues. Zoom link: https://us02web.zoom.us/j/82952846229?pwd=UXkwZ3RmU1VZUEM3bDlNS1RsSzNzdz09 Bjoern -- Bjoern Peters Professor La Jolla Institute for Immunology 9420 Athena Circle La Jolla, CA 92037, USA Tel: 858/752-6914 Fax: 858/752-6987 http://www.liai.org/pages/faculty-peters |
|
From: Sebastian D. <sdu...@lj...> - 2025-09-26 18:33:39
|
Hi everyone, I'm chairing the OBI developer call this week. I'd like to discuss recent open PRs. If there's any time remaining, I will lead a review of issues. Please let me know if there is anything you'd like to add to the agenda. Best, Sebastian Call details: - Monday, noon Eastern Time, 9 AM Pacific Time, for one hour - Zoom link: https://us02web.zoom.us/j/82952846229?pwd=UXkwZ3RmU1VZUEM3bDlNS1RsSzNzdz09 Meeting ID: 829 5284 6229 Passcode: 535959 - Agenda https://docs.google.com/document/d/1eEutJAG56gncTsWf2sAqHa4a9pQAuCbhsg_kmbF78tw - OBI Pull Requests https://github.com/obi-ontology/obi/pulls - OBI Issues https://github.com/obi-ontology/obi/issues - Alternate OBI Issues link, sorted by ‘thumbs-up’: https://github.com/obi-ontology/obi/issues?q=is%3Aissue+is%3Aopen+sort%3Areactions-%2B1-desc |
|
From: Sebastian D. <sdu...@lj...> - 2025-09-05 17:42:37
|
Hi everyone, I'm chairing the OBI developer call this week. I'd like to discuss follow-ups from last week's discussion of IAO:"data item" and a PR to add some new relations. If there's any time remaining, I will lead a review of other open pull requests and issues. Best, Sebastian Call details: - Monday, noon Eastern Time, 9 AM Pacific Time, for one hour - Zoom link: https://us02web.zoom.us/j/82952846229?pwd=UXkwZ3RmU1VZUEM3bDlNS1RsSzNzdz09 Meeting ID: 829 5284 6229 Passcode: 535959 - Agenda https://docs.google.com/document/d/1eEutJAG56gncTsWf2sAqHa4a9pQAuCbhsg_kmbF78tw |
|
From: Bjoern P. <bp...@lj...> - 2025-08-24 20:22:32
|
Hi all, I am chairing the call tomorrow. So far we have two agenda items: - COB call (the hour before) follow up - 'Data entity' follow up (featuring Bill Duncan). https://github.com/information-artifact-ontology/IAO/issues/283 Let me know if there are other items we should add. - Bjoern -- Bjoern Peters Professor La Jolla Institute for Immunology 9420 Athena Circle La Jolla, CA 92037, USA Tel: 858/752-6914 Fax: 858/752-6987 http://www.liai.org/pages/faculty-peters |
|
From: Bjoern P. <bp...@lj...> - 2025-08-11 17:39:03
|
We have had very low attendance today (like last week), and decided to cancel the calls until August 25 (which I will chair) -- Bjoern Peters Professor La Jolla Institute for Immunology 9420 Athena Circle La Jolla, CA 92037, USA Tel: 858/752-6914 Fax: 858/752-6987 http://www.liai.org/pages/faculty-peters |
|
From: Bjoern P. <bp...@lj...> - 2025-08-08 20:42:14
|
Hi everyone, I'm chairing the OBI developer call this week. Please let me know if you have specific items for the agenda, and email here, or add directly to the google doc. If there are no specific items, we will go through issues. - Bjoern Agenda: https://docs.google.com/document/d/1eEutJAG56gncTsWf2sAqHa4a9pQAuCbhsg_kmbF78tw - OBI Pull Requests https://github.com/obi-ontology/obi/pulls - OBI Issues https://github.com/obi-ontology/obi/issues - Alternate OBI Issues link, sorted by ‘thumbs-up’: https://github.com/obi-ontology/obi/issues?q=is%3Aissue+is%3Aopen+sort%3Areactions-%2B1-desc -- Bjoern Peters Professor La Jolla Institute for Immunology 9420 Athena Circle La Jolla, CA 92037, USA Tel: 858/752-6914 Fax: 858/752-6987 http://www.liai.org/pages/faculty-peters |
|
From: Mathias B. <mbr...@gm...> - 2025-08-01 15:51:35
|
Dear colleagues, Matt Diller has recently revived the OGMS group meeting and with already being part of OMRSE and OBI I need to cut back one of my current group. I am going to drop of the OBI meeting as most of my research is closer to OGMS and OMRSE topics at this point. I am grateful for the experience and I did learn a lot. Thanks, Mathias On Fri, Aug 1, 2025 at 10:43 AM Sebastian Duesing <sdu...@lj...> wrote: > Hi everyone, > > I'm chairing the OBI developer call this week. I'd like to spend 10 > minutes talking about upcoming COB transition plans. If anyone else has > anything to add to the agenda, please feel free. If there's any time > remaining, I will lead a review of open pull requests and issues. > > Best, > > Sebastian > > Call details: > - Monday, noon Eastern Time, 9 AM Pacific Time, for one hour > - Zoom link: > https://us02web.zoom.us/j/82952846229?pwd=UXkwZ3RmU1VZUEM3bDlNS1RsSzNzdz09 > Meeting ID: 829 5284 6229 > Passcode: 535959 > - Agenda > https://docs.google.com/document/d/1eEutJAG56gncTsWf2sAqHa4a9pQAuCbhsg_kmbF78tw > - OBI Pull Requests https://github.com/obi-ontology/obi/pulls > - OBI Issues https://github.com/obi-ontology/obi/issues > - Alternate OBI Issues link, sorted by ‘thumbs-up’: > https://github.com/obi-ontology/obi/issues?q=is%3Aissue+is%3Aopen+sort%3Areactions-%2B1-desc > > _______________________________________________ > Obi-devel mailing list > Obi...@li... > https://lists.sourceforge.net/lists/listinfo/obi-devel > |
|
From: Sebastian D. <sdu...@lj...> - 2025-08-01 15:43:36
|
Hi everyone, I'm chairing the OBI developer call this week. I'd like to spend 10 minutes talking about upcoming COB transition plans. If anyone else has anything to add to the agenda, please feel free. If there's any time remaining, I will lead a review of open pull requests and issues. Best, Sebastian Call details: - Monday, noon Eastern Time, 9 AM Pacific Time, for one hour - Zoom link: https://us02web.zoom.us/j/82952846229?pwd=UXkwZ3RmU1VZUEM3bDlNS1RsSzNzdz09 Meeting ID: 829 5284 6229 Passcode: 535959 - Agenda https://docs.google.com/document/d/1eEutJAG56gncTsWf2sAqHa4a9pQAuCbhsg_kmbF78tw - OBI Pull Requests https://github.com/obi-ontology/obi/pulls - OBI Issues https://github.com/obi-ontology/obi/issues - Alternate OBI Issues link, sorted by ‘thumbs-up’: https://github.com/obi-ontology/obi/issues?q=is%3Aissue+is%3Aopen+sort%3Areactions-%2B1-desc |
|
From: James A. O. <ja...@ov...> - 2025-07-31 17:16:12
|
Hi everyone, A new OBI release is available: - Versioned OWL: http://purl.obolibrary.org/obo/obi/2025-07-28/obi.owl - Notes: https://github.com/obi-ontology/obi/releases/tag/v2025-07-28 - Branch: https://github.com/obi-ontology/obi/tree/v2025-07-28 This release includes a new `obi-cob.owl` file that uses COB as the top-level ontology for OBI: http://purl.obolibrary.org/obo/obi/2025-07-28/obi-cob.owl We are planning to use COB as the top-level of OBI in the primary `obi.owl` file starting at the end of October. Ontologies that import from OBI are strongly encouraged to test `obi-cob.owl` in their workflows as soon as possible. See <https://github.com/obi-ontology/obi/issues/1857> for details on OBI's transition to COB, and leave a comment about your testing: whether it worked or what problems you ran into. Best, James |
|
From: Berrios, D. (ARC-TI) <dan...@na...> - 2025-07-25 22:20:21
|
Please send me topics to discuss (or put them in the notes doc). Thanks! Call details: - Monday, noon Eastern Time, 9 AM Pacific Time, for one hour - Zoom link: https://us02web.zoom.us/j/82952846229?pwd=UXkwZ3RmU1VZUEM3bDlNS1RsSzNzdz09 Meeting ID: 829 5284 6229 Passcode: 535959 - Agenda https://docs.google.com/document/d/1eEutJAG56gncTsWf2sAqHa4a9pQAuCbhsg_kmbF78tw - OBI Pull Requests https://github.com/obi-ontology/obi/pulls - OBI Issues https://github.com/obi-ontology/obi/issues [NASA Meatball Logo]<https://www.nasa.gov/> Dan Berrios MD PhD MPH AST, COMPUTER RSCH AND DEVELOPMENT Intelligent Systems Division (Code TI) NASA Ames Research Center Mail Stop 269-3 Moffett Field, CA 94035 o: 650.604.0470 dan...@na...<mailto:dan...@na...> |
|
From: Sebastian D. <sdu...@lj...> - 2025-07-24 20:18:20
|
Hi everyone, A new OBI release candidate is available: - Pull Request: https://github.com/obi-ontology/obi/pull/1900 - Main OWL: https://raw.githubusercontent.com/obi-ontology/obi/rc-2025-07-24/obi.owl *This release candidate includes obi-cob.owl <https://github.com/obi-ontology/obi/blob/rc-2025-07-24/views/obi-cob.owl>, a version of OBI that uses COB, alongside the existing BFO-based OBI files.* Please review it and comment on the PR if you see any problems. We will make a release decision in one week. Best, Sebastian |
|
From: Damion D. <dam...@sf...> - 2025-07-14 02:53:27
|
Hi everyone, I'm chairing the OBI developer call this week. I'd like to discuss Material processing hierarchy and top-level defintions.. If there's any time remaining, I will lead a review of open pull requests and issues. Call details: - Monday, noon Eastern Time, 9 AM Pacific Time, for one hour - Zoom link: https://us02web.zoom.us/j/82952846229?pwd=UXkwZ3RmU1VZUEM3bDlNS1RsSzNzdz09 Meeting ID: 829 5284 6229 Passcode: 535959 - Agenda https://docs.google.com/document/d/1eEutJAG56gncTsWf2sAqHa4a9pQAuCbhsg_kmbF78tw - OBI Pull Requests https://github.com/obi-ontology/obi/pulls - OBI Issues https://github.com/obi-ontology/obi/issues - Alternate OBI Issues link, sorted by ‘thumbs-up’: https://github.com/obi-ontology/obi/issues?q=is%3Aissue+is%3Aopen+sort%3Areactions-%2B1-desc Cheers, Damion Damion Dooley, Ontology Development Lead Centre for Infectious Disease Genomics and One Health Faculty of Health Sciences, SFU, Canada Mobile 778-688-0049 |
|
From: DBpedia <pr...@in...> - 2025-07-10 11:47:31
|
==== DBpedia Day - Co-located with SEMANTiCS 2025 Vienna, Austria September 3, 2025 Submission Deadline: July 15, 2025 (AoE) Submission Form: https://forms.gle/6KNBMuRsyXs8RiD89 ==== How can Large Language Models (LLMs) benefit from structured knowledge like DBpedia? And how can we improve DBpedia to better serve the next generation of AI systems? This session invites talks on the intersection of LLMs and Knowledge Graphs, with a special emphasis on DBpedia. Our goal is to understand how to make Linked Data more useful, accessible, and trustworthy for LLM-based applications—and how to evolve DBpedia in this new AI-dominated landscape. = Topics of Interest = * Retrieval-Augmented Generation (RAG) with DBpedia * Prompt engineering for KG-aware LLMs * Query translation: From natural language to SPARQL using LLMs * Using LLMs to summarize or explain DBpedia data * LLMs as interfaces for Linked Data consumption * Automatic ontology alignment and entity linking with LLMs * Improving LLM factual accuracy with DBpedia as a trusted source * Challenges in grounding LLM output in structured knowledge * Scaling and performance considerations for hybrid KG–LLM systems * Bias, hallucination, and verification in LLMs using DBpedia * Use cases: e.g., chatbots, semantic search, Q&A systems powered by DBpedia + LLMs We welcome researchers, developers, and industry practitioners working on concrete tools, early-stage ideas, or critical perspectives. = Submission Guidelines = Please submit your proposal by July 15, 2025 (AoE) via: https://forms.gle/6KNBMuRsyXs8RiD89 Your proposal should include: * Title * Abstract (max. 300 words) * Short biography of the speaker(s) We are open to a wide range of talk formats: demos, position papers, success stories, lessons learned, or short idea pitches. Questions? Reach out to us at db...@in... or check our event page https://www.dbpedia.org/blog/dbpedia-day-2025/. Join us to shape how LLMs and DBpedia can empower each other! Best regards, Julia, Milan & Sebastian DBpedia Team |
|
From: Sebastian D. <sdu...@lj...> - 2025-07-03 13:00:43
|
Hi everyone, I'm chairing the OBI developer call on Monday. I'd like to discuss OBI-COB release logistics, with a goal of deciding on a timeline for the final adoption of COB into OBI. If there's any time remaining, I will lead a review of open pull requests and issues. Best, Sebastian Call details: - Monday, noon Eastern Time, 9 AM Pacific Time, for one hour - Zoom link: https://us02web.zoom.us/j/82952846229?pwd=UXkwZ3RmU1VZUEM3bDlNS1RsSzNzdz09 Meeting ID: 829 5284 6229 Passcode: 535959 - Agenda https://docs.google.com/document/d/1eEutJAG56gncTsWf2sAqHa4a9pQAuCbhsg_kmbF78tw - OBI Pull Requests https://github.com/obi-ontology/obi/pulls - OBI Issues https://github.com/obi-ontology/obi/issues - Alternate OBI Issues link, sorted by ‘thumbs-up’: https://github.com/obi-ontology/obi/issues?q=is%3Aissue+is%3Aopen+sort%3Areactions-%2B1-desc |
|
From: Kossi A. <kam...@ai...> - 2025-07-01 09:51:40
|
SEMANTiCS 2025 EU 21st International Conference on Semantic Systems Vienna, Austria September 3 - 5, 2025 Follow us on *Twitter/X* <https://x.com/SemanticsConf>, *LinkedIn* <https://www.linkedin.com/groups/7496190/?highlightedUpdateUrn=urn%3Ali%3AgroupPost%3A7496190-7323992151481098241&q=highlightedFeedForGroups>, and *Bluesky*. <https://bsky.app/profile/semantics-conf.bsky.social> Call for Posters & Demos The Posters & Demos Track provides a platform for researchers to showcase their latest findings, ongoing projects, and cutting-edge work in progress. These include submissions on innovative applications, latest results, unpublished ideas, prototypes of semantic technologies and their use in various domains as well as applications, use cases, or pieces of code that may attract developers and potential research or business partners. This also concerns new datasets made publicly available. The Posters & Demos Track offers an informal setting that promotes engagement and dialogue between presenters and attendees. These discussions can provide valuable feedback for presenters' future work while allowing participants to gain insight into emerging research trends and network with other researchers. *Important dates:* - *Paper Submission Deadline: July 4, 2025* - *Notification of Acceptance: July 21, 2025 * - *Camera-Ready of Paper Deadline: July 28, 2025* *All deadlines are set for 11:59 pm, Anywhere On Earth time (UTC-12)* *Submission via Easychair on* *https://easychair.org/conferences/?conf=semantics2025* <https://easychair.org/conferences/?conf=semantics2025>. Proceedings of SEMANTiCS 2025 EU will be made available open access by * CEUR-WS.org*. Topics of Interest We welcome contributions in the context of semantic-based research and systems, which address – but are not limited to – the topics of the Research Track <https://2025-eu.semantics.cc/page/cfp_rev_rep>. Additionally, we encourage submissions of visionary ideas, position statements, negative results, and unconventional ideas. Demos should showcase innovative implementations and technologies both, from academia and industry. We also very much encourage submissions from industry, but they should be focused on presenting a novel solution to a specific problem and not be in the nature of an advertisement or commercial product description. Author Guidelines and Submission Poster and demo submissions should consist of a paper that describes the work, its contribution to the field or innovative aspects. - Poster and demo submissions are at most 5 pages long, including references. - No double-blind submissions required. - Submissions must be either in PDF or HTML. - Submissions must be formatted in the style of CEUR-ART ( https://ceur-ws.org/HOWTOSUBMIT.html). An Overleaf page for LaTeX users is available. - For demos, we ask authors to include links enabling the reviewers to test the application or review the component. The absence of a pointer affects the overall rating of the contribution. - Submissions must be original and must not have been submitted for publication elsewhere. - At least one author of each accepted paper must register for the conference and present the paper. Posters and Demos Track Chairs Ivan Heibi Diego Collarana Kind Regards, On behalf of the organising committee. ========================= Dr. Kossi Amouzouvi ScaDS.AI Dresden/Leipzig, TU Dresden -- DISCLAIMER: The contents of this email and any attachments are confidential. They are intended for the named recipient(s) only. If you have received this email by mistake, please notify the sender immediately and you are herewith notified that the contents are legally privileged and that you do not have permission to disclose the contents to anyone, make copies thereof, retain or distribute or act upon it by any means, electronically, digitally or in print. The views expressed in this communication may be of a personal nature and not be representative of AIMS-NEI and/or any of its Centres or Initiatives. |
|
From: Mathias B. <mbr...@gm...> - 2025-06-30 12:07:49
|
I am out of the office today and I will need to miss the meeting (again). My apologies. Best, Mathias On Sun, Jun 29, 2025 at 4:59 PM Bjoern Peters <bp...@lj...> wrote: > I am hosting the call tomorrow. We will have guests, and should focus on > their issues: > > > - > > Jie asked to discuss: https://github.com/obi-ontology/obi/issues/1877 > which comes from IAO: > - > > https://github.com/information-artifact-ontology/IAO/issues/283 > - > > data collection, dataset, data record, data table, data field > - > > Discussed; needs further discussion. Deferred to 30 June. > - If @joergwa joins, we should discuss his issue about BFO 2020 > compatibility https://github.com/obi-ontology/obi/issues/1880 > > > If time is left, we will move on to other open issues. > > -- > Bjoern Peters > Professor > La Jolla Institute for Immunology > 9420 Athena Circle > La Jolla, CA 92037, USA > Tel: 858/752-6914 > Fax: 858/752-6987 > http://www.liai.org/pages/faculty-peters > _______________________________________________ > Obi-devel mailing list > Obi...@li... > https://lists.sourceforge.net/lists/listinfo/obi-devel > |