[Obi-devel] OBI Development Call December 1, 2025

[Michelle G. <mg...@so...>]

Hi All,

I’ll be chairing the call this week.
We will continue review of the RNA-seq term reorganization and there is also an item that Mark requested be discussed.

Call details:
- Monday, noon Eastern Time, 9 AM Pacific Time, for one hour
- Zoom link:
https://us02web.zoom.us/j/82952846229?pwd=UXkwZ3RmU1VZUEM3bDlNS1RsSzNzdz09
Meeting ID: 829 5284 6229
Passcode: 535959

Agenda:

  1.
Mark’s item (in the notes doc<https://docs.google.com/document/d/1eEutJAG56gncTsWf2sAqHa4a9pQAuCbhsg_kmbF78tw/edit?usp=sharing>)
  2.
Review process of building assay template for RNAseq reorg
  3.
Specific questions in reorg template<https://docs.google.com/spreadsheets/d/1Gg7mmwJNhrOaQSlyUO-fzoxRYZErzZiUsHARzHOK7G4/edit?usp=sharing>
     *
Review patch-see - row 35
     *
How to merge a term - row 20
     *
Column for link to GitHub issue
  4.
Translation profiling terms - rows 41, 42
  5.
Spatial transcriptomics -
     *
Line 21 in template - ’slide-seq'
     *
Should 'spatial transcriptome profiling' be a child of ’transcription profiling’? Wouldn’t be consistent with other terms at that level.
     *
Could alternatively have a 'spatial transcription profiling by RNA sequencing assay’ term plus spatial children for the other transcription profiling terms? But that is cumbersome and there will be many multimodal terms.
     *
Several other terms: DARTFISH, GeoMx
  6.
RNA bind and seq - row 17 in the template

Best,
Michelle