NUCPOS

Suite for analysis of genome-wide nucleosome positions

Brought to you by: patterh

Add a Review

Downloads: 0 This Week

Last Update: 2015-09-16

Browse Code

Get an email when there's a new version of NUCPOS

NUCPOS is a suite of utilities for the analysis of genome-wide nucleosome positions. The suite is currently composed of 5 programs:

nucfrag
dyad_bins
align_dyads
dinucleotide_frequencies
hp_fft

The analysis starts with the SAM format alignment file generated by an alignment program such as Bowtie2. All utilities are coded in C++ 11, and can easily be modified to use any available genome sequence.

Project Samples

Project Activity

See All Activity >

Follow NUCPOS

NUCPOS Web Site

Other Useful Business Software

Try Google Cloud Risk-Free With $300 in Credit

No hidden charges. No surprise bills. Cancel anytime.

Use your credit across every product. Compute, storage, AI, analytics. When it runs out, 20+ products stay free. You only pay when you choose to.

Start Free

Rate This Project

User Reviews

Be the first to post a review of NUCPOS!

Additional Project Details

Registered

2015-09-07

Report inappropriate content

Try Google Cloud Risk-Free With $300 in Credit

No hidden charges. No surprise bills. Cancel anytime.

Use your credit across every product. Compute, storage, AI, analytics. When it runs out, 20+ products stay free. You only pay when you choose to.

Start Free

Recommended Projects

SAM tools
SAM (Sequence Alignment/Map) is a flexible generic format for storing nucleotide sequence alignment. SAMtools provide efficient utilities on manipulating alignments in the SAM format. The main samtools source code repository moved to GitHub in March 2012. For ongoing development since then, see http://github.com/samtools/samtools
GMATA software for Genomic SSR marker
Genome-wide Microsatellite Analyzing Toward Application: GMATA
MUMmer
MUMmer is a modular system for the rapid whole genome alignment of finished or draft sequence. This package provides an efficient suffix tree library, seed-and-extend alignment, SNP detection, repeat detection, and visualization tools.
PWMScan
A Web-based genome-wide Position Weight Matrix (PWM) Scanner
MAGeCK
Model-based Analysis of Genome-wide CRISPR-Cas9 Knockout