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From: Stefan K. <ste...@un...> - 2006-02-15 17:05:24
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Dear NMRShiftDB-users, last week we deployed a new version of NMRShiftDB to the servers. A major improvements is a proton prediction based on HOSE codes or support vector machines. These should give good results, although improvements can and w= ill be done. Other changes are e. g. the possibility to restrict all types of searches to certain spectrum types. For a complete list see http://nmrshiftdb.sourceforge.net/CHANGELOG. On http://www.sf.net/projects/nmrshiftdb you will again find a binary and a source version of the software and a database snapshot (not containing personal data). We also hope that we reduced the number of errors and increased performan= ce. Druing the change of the version on the servers, there might have been so= me problems. Apologies for these! Greetings, Christoph Steinbeck and Stefan Kuhn --=20 Stefan Kuhn M. A. Cologne University BioInformatics Center (http://www.cubic.uni-koeln.de) Z=C3=BClpicher Str. 47, 50674 Cologne Tel: +49(0)221-470-7428 Fax: +49 (0) 221-470-7786 My public PGP key is available at http://pgp.mit.edu |
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From: Lauren D. <lau...@ya...> - 2006-01-26 14:05:43
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The phosphorous standard is missing and it was being shared by the 400b and 500b. If you took it, please return it. If you broke it, please replace it. It's not hard to put phosphoric acid in an NMR tube. |
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From: <zi...@fe...> - 2006-01-18 08:03:38
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webmaster, would you please remove me from the mailing list? |
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From: <ac...@uc...> - 2006-01-18 07:36:15
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To Webmaster, Take me off the email list. thanks. |
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From: Eungpark <ey...@gs...> - 2006-01-18 03:31:00
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RGVhciBXZWIgTWFzdGVyOg0KDQpUaGFuayB5b3UgZm9yIHlvdXIga2luZCBlLW1haWwuICBXb3Vs ZCBwdXQgbXkgZS1tYWlsIGFkZHJlc3MgaW4gdGhlIG1haWxpbmcgbGlzdD8gIFRoYW5rIHlvdSBh Z2lhbi4NCg0KU2luY2VyZWx5IHlvdXJzLA0KDQpFdW5nIFkuIFBhcms= |
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From: Eungpark <ey...@gs...> - 2006-01-18 02:07:17
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RGVhciBXZWIgTWFzdGVyOg0KDQpUaGFuayB5b3UgZm9yIHlvdXIgZS1tYWlsIHRvIGNvbmZpcm0g bXkgZS1tYWlsIGFkZHJlc3MuICBCeSB0aGUgd2F5LCB5ZXN0ZXJkYXkgSSBtYWRlIGFuIGVycm93 IGluIGJvb2ttYXJraW5nLiAgUGxlYXNlIGZvcmdpdmUgbWUsIGl0IHdhcyB0aGUgZmlyc3QgZGF5 IG9mIG5tcnNoaWZ0IHNpdGUuICBUaGFuayB5b3UgYWdhaW4uDQoNClNpbmNlcmVseSB5b3Vycywg DQoNCkV1bmcgWS4gUGFyayA= |
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From: Mariana V. <mar...@ma...> - 2005-10-18 14:01:43
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Farm. Mariana Vallejo Farmacognosia, Dpto. de Farmacia Facultad de Ciencias Qu=EDmicas Universidad Nacional de C=F3rdoba IMBIV-CONICET C=F3rdoba, Argentina ---------------------------------------------------------------- This message was sent using IMP, the Internet Messaging Program. |
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From: dinesh b. <din...@ya...> - 2005-10-18 13:52:01
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please post the nmrshiftdb users list thanking you. --------------------------------- Do you Yahoo!? Yahoo! Photos: Now with unlimited storage |
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From: Stefanova, R. <Rou...@nr...> - 2005-06-07 11:51:30
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Please take my name and e-mail address off your Nmrshiftdb-users mailing list. Thanks, Roumiana |
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From: C.S. M. <mat...@re...> - 2005-05-11 07:18:31
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=A0=0ADear Sir,=0A=0AKindly list my name in the users.=0ASincerely=0AProf.= CS Mathela=0AHead Chemistry=0AKumaun University=0ANainital =0AINDIA=0A=0AH= ead, Department of Chemistry=0AKumaun University, Nainital, India |
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From: Christoph S. <c.s...@un...> - 2005-04-07 11:57:49
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Dear NMRShiftDB users, In recent weeks, NMRShiftDB has been gaining 1 to 3 registered users per=20 day. At the moment, we are at around 412. I would like send a hearty welcome to all of you who recently subscribed. This email is to once again point out that the idea of growth by=20 contributions from the users is the central idea of the NMRShiftDB=20 project. Currently, only 5 percent of all registered(!) users (not to=20 mention the invisible majority) have contributed. And I should mention=20 that the majority of datasets stems from contributors who are not listed=20 in the hall of fame. So, my appeal to you is to consider contributing datasets for NMRShiftDB=20 at whatever rate you can live with. With only 300 users contributing 1=20 dataset per week, we will end up with a very nice growth rate. Also, there might be inhouse collections of NMR data at your=20 institution, which you could contribute - we even write the parser for yo= u. Last not least, it would be nice if people could use this=20 nmrshiftdb-users mailing list for discussion, comments, criticism, etc. The project is very alive and new users arrive every day - the emergence=20 of a real NMRShiftDB community would make it an even greater success. Best Greetings, Christoph Steinbeck --=20 Priv. Doz. Dr. Christoph Steinbeck (c.s...@un...) Head of the Research Group for Molecular Informatics Cologne University BioInformatics Center (http://www.cubic.uni-koeln.de) Z=FClpicher Str. 47, 50674 Cologne Tel: +49(0)221-470-7426 Fax: +49 (0) 221-470-7786 What is man but that lofty spirit - that sense of enterprise. ... Kirk, "I, Mudd," stardate 4513.3.. |
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From: <zi...@fe...> - 2005-03-04 09:28:36
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From: Christoph S. <c.s...@un...> - 2004-11-22 08:40:52
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Dear Colleagues, quite some time has passed since my last email to this nmrshiftdb-users=20 mailing list. Meanwhile, we are at version 1.0.9 of NMRShiftDB and we have published a=20 second article about the database [2], this time addressing some use=20 cases. Technical details can be found in the first NMRShiftDB=20 publication [1]. The number of registered users has again grown considerably, on average=20 still at a rate of about one per day. It has also been a great success=20 to reach a database size of about 12000 structures and spectra in such a=20 short time. Still there is some room for improvements: 1. CONSIDER CONTRIBUTING DATASETS One of the more interesting feature of NMRShiftDB, which makes it=20 different from existing databases in the field, is the option for the=20 user to contribute datasets. Only by this mechanism, NMRShiftDB will get=20 bigger and better. Please consider contributing to NMRShiftDB by=20 entering datasets (a structure, a spectrum, an assignment and some=20 additional data) which are interesting for you. This could be either=20 from your own work or from the current or past literature. If there are electronic collections of such data in your institution,=20 consider donating them to NMRShiftDB. We will be happy to write a parser=20 for this data. Just think about one dataset per week (!) (~15 min, depending of the=20 dataset size). With 300 users, this makes 15000 datasets per year. We=20 are also looking for people to act as reviewers of dataset. In order to=20 qualify as a reviewer, you should have added at least ten datasets to=20 the database, which again were validated by others as being correct. The NMRShiftDB stand-alone client MyNMRShiftDB is in a usable state, so=20 you might want to consider it for doing offline data input (for example=20 during a long train ride :-)). You can then upload the data to the web=20 database as soon as you are online again. 2. POST QUESTIONS, HINTS, ETC., TO THIS LIST This email list is supposed to be forum of information exchange between=20 NMRShiftDB users. If there are any questions, hints, comments, etc.,=20 consider sending your email to this list. This will make the discussion=20 more efficient and transparent, compared to an email exchange between=20 just the administrators and you. We would love to get some feedback from=20 your side. Further, consider reporting bugs and filing requests for=20 enhancements (RFE) via http://www.sourceforge.net/projects/nmrshiftdb With best regards, Christoph Steinbeck and Stefan Kuhn [1] Steinbeck, C.; Kuhn, S.; Krause, S. NMRShiftDB - Constructing a=20 Chemical Information System with Open Source Components. Journal of=20 Chemical Information & Computer Sciences 2003, 43, 1733 - 1739. http://dx.doi.org/10.1021/ci0341363 [2] Steinbeck, C.; Kuhn, S. NMRShiftDB =96 compound identification and=20 structure elucidation support through a free community-build web=20 database. Phytochemistry 2004, 65, 2711-2717.=20 http://dx.doi.org/10.1016/j.phytochem.2004.08.027 --=20 Dr. habil. Christoph Steinbeck (c.s...@un...) Head of the Junior Research Group for Applied Bioinformatics Cologne University BioInformatics Center (http://www.cubic.uni-koeln.de) Z=FClpicher Str. 47, 50674 Cologne Tel: +49(0)221-470-7426 Fax: +49 (0) 221-470-7786 What is man but that lofty spirit - that sense of enterprise. ... Kirk, "I, Mudd," stardate 4513.3.. |
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From: Stefan K. <ste...@un...> - 2004-10-21 13:36:30
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Dear NMRShiftDB-User, this is to announce new releases of NMRShiftDB and myNMRShiftDB. The NMRShiftDB 1.0.9 release has already been deployed to all of the servers.= =20 Although browsers may now show a fancy icon, which looks like a major cha= nge,=20 this is actually mainly a bugfix release, with some minor new features. S= ee=20 http://nmrshiftdb.sourceforge.net/CHANGELOG for details. On http://www.sf.net/projects/nmrshiftdb you will again find a binary and= a source version of the software and a database snapshot (not containing personal data). We can also announce that we reached 11241 structures and 12200 spectra.=20 Still, contributions are highly welcome. With best regards, Stefan Kuhn and Christoph Steinbeck --=20 Stefan Kuhn M. A. Cologne University BioInformatics Center (http://www.cubic.uni-koeln.de) Z=C3=BClpicher Str. 47, 50674 Cologne Tel: +49(0)221-470-7428 Fax: +49 (0) 221-470-7786 My public PGP key is available at http://pgp.mit.edu |
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From: Christoph S. <c.s...@un...> - 2004-10-15 15:00:10
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Dear NMRShiftDB Users, I'm glad to announce the publication of the second article about=20 NMRShiftDB. After the first, more technical publication [1], we now wrote about the=20 use of NMRShiftDB in a structure elucidation context [2]. Regards, Christoph Steinbeck [1] Steinbeck, C.; Kuhn, S.; Krause, S. NMRShiftDB - Constructing a=20 Chemical Information System with Open Source Components. Journal of=20 Chemical Information & Computer Sciences 2003, 43, 1733 - 1739.=20 http://dx.doi.org/10.1021/ci0341363 [2] Steinbeck, C.; Kuhn, S. NMRShiftDB =96 compound identification and=20 structure elucidation support through a free community-build web=20 database. Phytochemistry 2004, 65, 2711-2717.=20 http://dx.doi.org/10.1016/j.phytochem.2004.08.027 --=20 Dr. habil. Christoph Steinbeck (c.s...@un...) Head of the Junior Research Group for Applied Bioinformatics Cologne University BioInformatics Center (http://www.cubic.uni-koeln.de) Z=FClpicher Str. 47, 50674 Cologne Tel: +49(0)221-470-7426 Fax: +49 (0) 221-470-7786 What is man but that lofty spirit - that sense of enterprise. ... Kirk, "I, Mudd," stardate 4513.3.. |
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From: Stefan K. <ste...@un...> - 2004-09-10 19:39:37
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Dear NMRShiftDB-User, this is to announce new releases of NMRShiftDB and myNMRShiftDB. The=20 NMRShiftDB 1.0.8 release has already been deployed to all of the servers.= New=20 features are: * The result of a prediction now has a link to structures from which the= =20 values came. * A "search for hose code" is possible. * Front page now contains a "choose random entry" facility. * When doing a prediction for a structure which is in db, you get a link = to=20 this structure. * Repeating searches from search history now allows boolean and/or/not. * Users can later change their preference for being in hall of fame. * User can now choose coordinate set in case there is more than one. There is also a new relase of our stand-alone client, mainly for making=20 synchronisation possible with the current NMRShiftDB release. Updates=20 preserving all data are possible. On http://www.sf.net/projects/nmrshiftdb you will again find a binary and= a=20 source version of the software and a database snapshot (not containing=20 personal data). With best regards, Stefan Kuhn and Christoph Steinbeck --=20 Stefan Kuhn M. A. Cologne University BioInformatics Center (http://www.cubic.uni-koeln.de) Z=C3=BClpicher Str. 47, 50674 Cologne Tel: +49(0)221-470-7428 Fax: +49 (0) 221-470-7786 My public PGP key is available at http://pgp.mit.edu |
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From: Stefan K. <ste...@un...> - 2004-07-28 13:38:25
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Dear NMRShiftDB-User, this is to announce new releases of NMRShiftDB and myNMRShiftDB. The NMRShiftDB 1.0.7 release has already been deployed to all of the serv= ers.=20 The most important change is a much improved jcamp reader, which is able = to=20 read output from common spectroscopic software (also compressed) and perf= orms=20 a peak peaking, if no peak table is in the file. The reader can be used f= or=20 searches and submits. For further changes see =20 http://nmrshiftdb.sourceforge.net/CHANGELOG. The myNMRShiftDB 0.5 release is mainly for making synchronisation possibl= e=20 with the current NMRShiftDB release. Updates preserving all data are=20 possible. On http://www.sf.net/projects/nmrshiftdb you will again find a binary and a source version of the software and a database snapshot (not containing personal data). With best regards, Stefan Kuhn and Christoph Steinbeck --=20 Stefan Kuhn M. A. Cologne University BioInformatics Center (http://www.cubic.uni-koeln.de) Z=C3=BClpicher Str. 47, 50674 Cologne Tel: +49(0)221-470-7428 Fax: +49 (0) 221-470-7786 My public PGP key is available at http://pgp.mit.edu |
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From: Stefan K. <ste...@un...> - 2004-06-23 08:49:41
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Dear NMRShiftDB-User, this is to announce new releases of NMRShiftDB and myNMRShiftDB. The new release has already been deployed to all of the servers. This time, the most important changes are in myNMRShiftDB, our=20 stand-alone client. It now includes a search facility (local and remote)=20 and the possibility to download data from the servers. The NMRShiftDB server software now includes some minor new features like=20 a persistent login with cookies, as well as bug fixes. For a complete list of changes see http://nmrshiftdb.sourceforge.net/CHANGELOG respectivly http://nmrshiftdb.sourceforge.net/mynmrshiftdb/CHANGELOG. On http://www.sf.net/projects/nmrshiftdb you will again find a binary and a source version of the software and a database snapshot (not containing personal data). With best regards, Stefan Kuhn and Christoph Steinbeck --=20 Stefan Kuhn M. A. Cologne University BioInformatics Center (http://www.cubic.uni-koeln.de) Z=C3=BClpicher Str. 47, 50674 Cologne Tel: +49(0)221-470-7428 Fax: +49 (0) 221-470-7786 My public PGP key is available at http://pgp.mit.edu |
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From: Stefan K. <ste...@un...> - 2004-05-14 12:21:14
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Dear NMRShiftDB-User, this is to announce new releases of NMRShiftDB and myNMRShiftDB. The new release has already been deployed to all of the servers. Changes include a much improved spectrum prediction as well as the possibility for contributors (via personal page) and reviewers to edit contributions at any time prior to the final review. For a complete=20 list of changes see http://nmrshiftdb.sourceforge.net/CHANGELOG. The myNMRShiftDB 0.3 release is mainly for making synchronisation=20 possible with the current NMRShiftDB release. It also fixes a major bug, = which=20 confused assignments after saving a spectrum. Updates from 0.2, preservin= g=20 all data, are possible. On http://www.sf.net/projects/nmrshiftdb you will again find a binary and a source version of the software and a database snapshot (not containing personal data). With best regards, Stefan Kuhn and Christoph Steinbeck --=20 Stefan Kuhn M. A. Cologne University BioInformatics Center (http://www.cubic.uni-koeln.de) Z=C3=BClpicher Str. 47, 50674 Cologne Tel: +49(0)221-470-7428 Fax: +49 (0) 221-470-7786 My public PGP key is available at http://pgp.mit.edu |
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From: Chen P. <cp...@ac...> - 2004-04-16 05:26:56
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I will be out of the office starting 04/14/2004 and will not return until 04/26/2004. I will respond to your message when I return. |
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From: Stefan K. <ste...@un...> - 2004-04-15 11:56:18
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Dear NMRShiftDB-User, A new version of myNMRShiftDB, our standalone-client for NMRShiftDB, has=20 been released. The current release offers easy input, locale storage and=20 upload of data to the central NMRShiftDB web server network. However,=20 myNMRShiftDB is still in alpha stage. Everybody is invited to test it=20 and report problems and make suggestions. We are also proud to anounce that the number of structures in NMRShiftDB=20 has risen to 8221 with 8953 spectra. Greetings, Stefan Kuhn and Christoph Steinbeck --=20 Stefan Kuhn M. A. Cologne University BioInformatics Center (http://www.cubic.uni-koeln.de) Z=C3=BClpicher Str. 47, 50674 Cologne Tel: +49(0)221-470-7428 Fax: +49 (0) 221-470-7786 My public PGP key is available at http://pgp.mit.edu |
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From: Stefan K. <ste...@un...> - 2004-04-01 09:02:36
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Dear users, The NMRShiftDB team is pleased to announce Release 1.0.3 of the=20 NMRShiftDB software. Version 1.0.3 fixes two bugs in the substructure=20 search, making it more reliable and robust. We also added the=20 possibility to enter multiplicities and coupling constants together with=20 chemical shifts. Since March 29th 2004 the new release is available on=20 http://www.nmrshiftdb.org For a complete list of changes see=20 http://nmrshiftdb.sourceforge.net/CHANGELOG. On http://www.sf.net/projects/nmrshiftdb you will again find a binary and a source version of the software and a database snapshot (not=20 containing personal data). With best regards, Stefan Kuhn and Christoph Steinbeck --=20 Stefan Kuhn M. A. Cologne University BioInformatics Center (http://www.cubic.uni-koeln.de) Z=C3=BClpicher Str. 47, 50674 Cologne Tel: +49(0)221-470-7428 Fax: +49 (0) 221-470-7786 My public PGP key is available at http://pgp.mit.edu |
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From: Stefan K. <ste...@un...> - 2004-03-05 14:21:31
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Dear users, yesterday we released version 1.0.2 of the NMRShiftDB softwar to the serv= ers.=20 This fixes some problems, especially with editing spectra. There are also= =20 some new features, e. g. a guestbook and a spectrum wishlist. Our experie= nces=20 contributors will note that the position of the literature input in the=20 submit process changed. See http://nmrshiftdb.sourceforge.net/CHANGELOG f= or=20 details. On http://www.sf.net/project/nmrshiftdb you will again find a bi= nary=20 and a source version of the software and a database snapshot (not contain= ing=20 personal data). Greetings from the NMRShiftDB team.=20 --=20 Stefan Kuhn M. A. Cologne University BioInformatics Center (http://www.cubic.uni-koeln.de) Z=C3=BClpicher Str. 47, 50674 Cologne Tel: +49(0)221-470-7428 Fax: +49 (0) 221-470-7786 My public PGP key is available at http://pgp.mit.edu |
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From: Stefan K. <ste...@un...> - 2004-02-20 11:48:14
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Hi Reiner, thanks for your email. The reason for the error is that torque cannot acc= ess=20 the nmrshiftdb database. In order to operate a NMRShiftDB system, you nee= d to=20 install mysql, create a database nmrshiftdb, populate it and make it=20 accessible for torque. Torque uses username, password etc. from=20 WEB-INF/conf/TurbineResources.properties, section "D A T A B A S E S E T= T I=20 N G S". You know that in order to use NMRShiftDB you do not need to setup the sys= tem,=20 but can use the installation at www.nmrshiftdb.org? Setting up a system=20 yourself is only necessary if you want to have your own instance of=20 nmrshiftdb, e. g. as an inhouse database. Greetings, Stefan Am Friday 20 February 2004 11:41 schrieb Dieden Reiner: > Hello, > > Having downloaded nmrshiftdb1_0_1, I set up the db and am now trying to= get > the tomcat server running. > However I get the following error message when I try to go to the root = dir > fromthe tomcat manager : > type Exception report > message > description The server encountered an internal error () that prevented = it > from fulfilling this request. > exception > org.apache.jasper.JasperException: Invalid authorization specification: > Access denied for user: 'turbine@localhost' (Using password: YES) > at > org.apache.jasper.servlet.JspServletWrapper.service(JspServletWrapper.j= ava: >2 54) > at > org.apache.jasper.servlet.JspServlet.serviceJspFile(JspServlet.java:295= ) > at org.apache.jasper.servlet.JspServlet.service(JspServlet.java:241) > at javax.servlet.http.HttpServlet.service(HttpServlet.java:853) > at > org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(Applic= atio >n FilterChain.java:247) > at > org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFil= terC >h ain.java:193) > at > org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperVal= ve.j >a va:256) > at > org.apache.catalina.core.StandardPipeline$StandardPipelineValveContext.= invo >k eNext(StandardPipeline.java:643) > at > org.apache.catalina.core.StandardPipeline.invoke(StandardPipeline.java:= 480) > at > org.apache.catalina.core.ContainerBase.invoke(ContainerBase.java:995) > at > org.apache.catalina.core.StandardContextValve.invoke(StandardContextVal= ve.j >a va:191) > at > org.apache.catalina.core.StandardPipeline$StandardPipelineValveContext.= invo >k eNext(StandardPipeline.java:643) > at > org.apache.catalina.core.StandardPipeline.invoke(StandardPipeline.java:= 480) > at > org.apache.catalina.core.ContainerBase.invoke(ContainerBase.java:995) > at > org.apache.catalina.core.StandardContext.invoke(StandardContext.java:24= 17) > at > org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.jav= a:18 >0 ) > at > org.apache.catalina.core.StandardPipeline$StandardPipelineValveContext.= invo >k eNext(StandardPipeline.java:643) > at > org.apache.catalina.valves.ErrorDispatcherValve.invoke(ErrorDispatcherV= alve >. java:171) > at > org.apache.catalina.core.StandardPipeline$StandardPipelineValveContext.= invo >k eNext(StandardPipeline.java:641) > at > org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.jav= a:17 >2 ) > at > org.apache.catalina.core.StandardPipeline$StandardPipelineValveContext.= invo >k eNext(StandardPipeline.java:641) > at > org.apache.catalina.core.StandardPipeline.invoke(StandardPipeline.java:= 480) > at > org.apache.catalina.core.ContainerBase.invoke(ContainerBase.java:995) > at > org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve= .jav >a > > :174) > > at > org.apache.catalina.core.StandardPipeline$StandardPipelineValveContext.= invo >k eNext(StandardPipeline.java:643) > at > org.apache.catalina.core.StandardPipeline.invoke(StandardPipeline.java:= 480) > at > org.apache.catalina.core.ContainerBase.invoke(ContainerBase.java:995) > at > org.apache.coyote.tomcat4.CoyoteAdapter.service(CoyoteAdapter.java:193) > at > org.apache.coyote.http11.Http11Processor.process(Http11Processor.java:7= 81) > at > org.apache.coyote.http11.Http11Protocol$Http11ConnectionHandler.process= Conn >e ction(Http11Protocol.java:549) > at > org.apache.tomcat.util.net.TcpWorkerThread.runIt(PoolTcpEndpoint.java:5= 89) > at > org.apache.tomcat.util.threads.ThreadPool$ControlRunnable.run(ThreadPoo= l.ja >v a:666) > at java.lang.Thread.run(Thread.java:536) > root cause > javax.servlet.ServletException: Invalid authorization specification: Ac= cess > denied for user: 'turbine@localhost' (Using password: YES) > at > org.apache.jasper.runtime.PageContextImpl.handlePageException(PageConte= xtIm >p l.java:536) > at org.apache.jsp.index_jsp._jspService(index_jsp.java:69) > at > org.apache.jasper.runtime.HttpJspBase.service(HttpJspBase.java:137) > at javax.servlet.http.HttpServlet.service(HttpServlet.java:853) > at > org.apache.jasper.servlet.JspServletWrapper.service(JspServletWrapper.j= ava: >2 10) > at > org.apache.jasper.servlet.JspServlet.serviceJspFile(JspServlet.java:295= ) > at org.apache.jasper.servlet.JspServlet.service(JspServlet.java:241) > at javax.servlet.http.HttpServlet.service(HttpServlet.java:853) > at > org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(Applic= atio >n FilterChain.java:247) > at > org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFil= terC >h ain.java:193) > at > org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperVal= ve.j >a va:256) > at > org.apache.catalina.core.StandardPipeline$StandardPipelineValveContext.= invo >k eNext(StandardPipeline.java:643) > at > org.apache.catalina.core.StandardPipeline.invoke(StandardPipeline.java:= 480) > at > org.apache.catalina.core.ContainerBase.invoke(ContainerBase.java:995) > at > org.apache.catalina.core.StandardContextValve.invoke(StandardContextVal= ve.j >a va:191) > at > org.apache.catalina.core.StandardPipeline$StandardPipelineValveContext.= invo >k eNext(StandardPipeline.java:643) > at > org.apache.catalina.core.StandardPipeline.invoke(StandardPipeline.java:= 480) > at > org.apache.catalina.core.ContainerBase.invoke(ContainerBase.java:995) > at > org.apache.catalina.core.StandardContext.invoke(StandardContext.java:24= 17) > at > org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.jav= a:18 >0 ) > at > org.apache.catalina.core.StandardPipeline$StandardPipelineValveContext.= invo >k eNext(StandardPipeline.java:643) > at > org.apache.catalina.valves.ErrorDispatcherValve.invoke(ErrorDispatcherV= alve >. java:171) > at > org.apache.catalina.core.StandardPipeline$StandardPipelineValveContext.= invo >k eNext(StandardPipeline.java:641) > at > org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.jav= a:17 >2 ) > at > org.apache.catalina.core.StandardPipeline$StandardPipelineValveContext.= invo >k eNext(StandardPipeline.java:641) > at > org.apache.catalina.core.StandardPipeline.invoke(StandardPipeline.java:= 480) > at > org.apache.catalina.core.ContainerBase.invoke(ContainerBase.java:995) > at > org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve= .jav >a > > :174) > > at > org.apache.catalina.core.StandardPipeline$StandardPipelineValveContext.= invo >k eNext(StandardPipeline.java:643) > at > org.apache.catalina.core.StandardPipeline.invoke(StandardPipeline.java:= 480) > at > org.apache.catalina.core.ContainerBase.invoke(ContainerBase.java:995) > at > org.apache.coyote.tomcat4.CoyoteAdapter.service(CoyoteAdapter.java:193) > at > org.apache.coyote.http11.Http11Processor.process(Http11Processor.java:7= 81) > at > org.apache.coyote.http11.Http11Protocol$Http11ConnectionHandler.process= Conn >e ction(Http11Protocol.java:549) > at > org.apache.tomcat.util.net.TcpWorkerThread.runIt(PoolTcpEndpoint.java:5= 89) > at > org.apache.tomcat.util.threads.ThreadPool$ControlRunnable.run(ThreadPoo= l.ja >v a:666) > at java.lang.Thread.run(Thread.java:536) > > Any hint ? > > > Reiner Dieden > Analytical Chemistry, Chemical Research > UCB Pharma > Chemin du Foriest > B-1420 Braine-l'Alleud (Belgium) > tel :+32-2-386.27.12 > fax:+32-2-386.27.04 > rei...@uc... > > > > > --------------------------------------------------------- > Legal Notice: This electronic mail and its attachments are intended sol= ely > for the person(s) to whom they are addressed and contain information wh= ich > is confidential or otherwise protected from disclosure, except for the > purpose they are intended to. Dissemination, distribution, or reproduct= ion > by anyone other than their intended recipients is prohibited and may be > illegal. If you are not an intended recipient, please immediately infor= m > the sender and send him/her back the present e-mail and its attachments= and > destroy any copies which may be in your possession. > --------------------------------------------------------- --=20 Stefan Kuhn M. A. Cologne University BioInformatics Center (http://www.cubic.uni-koeln.de) Z=C3=BClpicher Str. 47, 50674 Cologne Tel: +49(0)221-470-7428 Fax: +49 (0) 221-470-7786 My public PGP key is available at http://pgp.mit.edu |
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From: Dieden R. <Rei...@UC...> - 2004-02-20 10:47:19
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Hello, Having downloaded nmrshiftdb1_0_1, I set up the db and am now trying to get the tomcat server running. However I get the following error message when I try to go to the root dir fromthe tomcat manager : type Exception report message description The server encountered an internal error () that prevented it from fulfilling this request. exception org.apache.jasper.JasperException: Invalid authorization specification: Access denied for user: 'turbine@localhost' (Using password: YES) at org.apache.jasper.servlet.JspServletWrapper.service(JspServletWrapper.java:2 54) at org.apache.jasper.servlet.JspServlet.serviceJspFile(JspServlet.java:295) at org.apache.jasper.servlet.JspServlet.service(JspServlet.java:241) at javax.servlet.http.HttpServlet.service(HttpServlet.java:853) at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(Application FilterChain.java:247) at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterCh ain.java:193) at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.ja va:256) at org.apache.catalina.core.StandardPipeline$StandardPipelineValveContext.invok eNext(StandardPipeline.java:643) at org.apache.catalina.core.StandardPipeline.invoke(StandardPipeline.java:480) at org.apache.catalina.core.ContainerBase.invoke(ContainerBase.java:995) at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.ja va:191) at org.apache.catalina.core.StandardPipeline$StandardPipelineValveContext.invok eNext(StandardPipeline.java:643) at org.apache.catalina.core.StandardPipeline.invoke(StandardPipeline.java:480) at org.apache.catalina.core.ContainerBase.invoke(ContainerBase.java:995) at org.apache.catalina.core.StandardContext.invoke(StandardContext.java:2417) at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:180 ) at org.apache.catalina.core.StandardPipeline$StandardPipelineValveContext.invok eNext(StandardPipeline.java:643) at org.apache.catalina.valves.ErrorDispatcherValve.invoke(ErrorDispatcherValve. java:171) at org.apache.catalina.core.StandardPipeline$StandardPipelineValveContext.invok eNext(StandardPipeline.java:641) at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:172 ) at org.apache.catalina.core.StandardPipeline$StandardPipelineValveContext.invok eNext(StandardPipeline.java:641) at org.apache.catalina.core.StandardPipeline.invoke(StandardPipeline.java:480) at org.apache.catalina.core.ContainerBase.invoke(ContainerBase.java:995) at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java :174) at org.apache.catalina.core.StandardPipeline$StandardPipelineValveContext.invok eNext(StandardPipeline.java:643) at org.apache.catalina.core.StandardPipeline.invoke(StandardPipeline.java:480) at org.apache.catalina.core.ContainerBase.invoke(ContainerBase.java:995) at org.apache.coyote.tomcat4.CoyoteAdapter.service(CoyoteAdapter.java:193) at org.apache.coyote.http11.Http11Processor.process(Http11Processor.java:781) at org.apache.coyote.http11.Http11Protocol$Http11ConnectionHandler.processConne ction(Http11Protocol.java:549) at org.apache.tomcat.util.net.TcpWorkerThread.runIt(PoolTcpEndpoint.java:589) at org.apache.tomcat.util.threads.ThreadPool$ControlRunnable.run(ThreadPool.jav a:666) at java.lang.Thread.run(Thread.java:536) root cause javax.servlet.ServletException: Invalid authorization specification: Access denied for user: 'turbine@localhost' (Using password: YES) at org.apache.jasper.runtime.PageContextImpl.handlePageException(PageContextImp l.java:536) at org.apache.jsp.index_jsp._jspService(index_jsp.java:69) at org.apache.jasper.runtime.HttpJspBase.service(HttpJspBase.java:137) at javax.servlet.http.HttpServlet.service(HttpServlet.java:853) at org.apache.jasper.servlet.JspServletWrapper.service(JspServletWrapper.java:2 10) at org.apache.jasper.servlet.JspServlet.serviceJspFile(JspServlet.java:295) at org.apache.jasper.servlet.JspServlet.service(JspServlet.java:241) at javax.servlet.http.HttpServlet.service(HttpServlet.java:853) at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(Application FilterChain.java:247) at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterCh ain.java:193) at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.ja va:256) at org.apache.catalina.core.StandardPipeline$StandardPipelineValveContext.invok eNext(StandardPipeline.java:643) at org.apache.catalina.core.StandardPipeline.invoke(StandardPipeline.java:480) at org.apache.catalina.core.ContainerBase.invoke(ContainerBase.java:995) at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.ja va:191) at org.apache.catalina.core.StandardPipeline$StandardPipelineValveContext.invok eNext(StandardPipeline.java:643) at org.apache.catalina.core.StandardPipeline.invoke(StandardPipeline.java:480) at org.apache.catalina.core.ContainerBase.invoke(ContainerBase.java:995) at org.apache.catalina.core.StandardContext.invoke(StandardContext.java:2417) at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:180 ) at org.apache.catalina.core.StandardPipeline$StandardPipelineValveContext.invok eNext(StandardPipeline.java:643) at org.apache.catalina.valves.ErrorDispatcherValve.invoke(ErrorDispatcherValve. java:171) at org.apache.catalina.core.StandardPipeline$StandardPipelineValveContext.invok eNext(StandardPipeline.java:641) at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:172 ) at org.apache.catalina.core.StandardPipeline$StandardPipelineValveContext.invok eNext(StandardPipeline.java:641) at org.apache.catalina.core.StandardPipeline.invoke(StandardPipeline.java:480) at org.apache.catalina.core.ContainerBase.invoke(ContainerBase.java:995) at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java :174) at org.apache.catalina.core.StandardPipeline$StandardPipelineValveContext.invok eNext(StandardPipeline.java:643) at org.apache.catalina.core.StandardPipeline.invoke(StandardPipeline.java:480) at org.apache.catalina.core.ContainerBase.invoke(ContainerBase.java:995) at org.apache.coyote.tomcat4.CoyoteAdapter.service(CoyoteAdapter.java:193) at org.apache.coyote.http11.Http11Processor.process(Http11Processor.java:781) at org.apache.coyote.http11.Http11Protocol$Http11ConnectionHandler.processConne ction(Http11Protocol.java:549) at org.apache.tomcat.util.net.TcpWorkerThread.runIt(PoolTcpEndpoint.java:589) at org.apache.tomcat.util.threads.ThreadPool$ControlRunnable.run(ThreadPool.jav a:666) at java.lang.Thread.run(Thread.java:536) Any hint ? Reiner Dieden Analytical Chemistry, Chemical Research UCB Pharma Chemin du Foriest B-1420 Braine-l'Alleud (Belgium) tel :+32-2-386.27.12 fax:+32-2-386.27.04 rei...@uc... --------------------------------------------------------- Legal Notice: This electronic mail and its attachments are intended solely for the person(s) to whom they are addressed and contain information which is confidential or otherwise protected from disclosure, except for the purpose they are intended to. Dissemination, distribution, or reproduction by anyone other than their intended recipients is prohibited and may be illegal. If you are not an intended recipient, please immediately inform the sender and send him/her back the present e-mail and its attachments and destroy any copies which may be in your possession. --------------------------------------------------------- |
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